simple	08-Dec-2024 00:00:00	Build Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job #32 (JB-GTC0-JOB1-32) started building on agent Default Agent
simple	08-Dec-2024 00:00:00	
simple	08-Dec-2024 00:00:00	Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1
simple	08-Dec-2024 00:00:00	Executing build Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job #32 (JB-GTC0-JOB1-32)
simple	08-Dec-2024 00:00:00	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	08-Dec-2024 00:00:00	Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1
simple	08-Dec-2024 00:00:00	Updating source code to revision: 6d1fc3490ca522df0ad2f6f25cadcff87a91eec9
simple	08-Dec-2024 00:00:00	Fetching 'refs/heads/releases/Release_2_11_4_Branch' from 'http://source.jalview.org/git/jalview.git'.
simple	08-Dec-2024 00:00:00	Checking out revision 6d1fc3490ca522df0ad2f6f25cadcff87a91eec9.
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	08-Dec-2024 00:00:00	Already on 'releases/Release_2_11_4_Branch'
simple	08-Dec-2024 00:00:00	Updated source code to revision: 6d1fc3490ca522df0ad2f6f25cadcff87a91eec9
simple	08-Dec-2024 00:00:00	Finished task 'Checkout Default Repository' with result: Success
simple	08-Dec-2024 00:00:00	Running pre-build action: VCS Version Collector
simple	08-Dec-2024 00:00:00	Running pre-build action: Artifactory Release Staging
command	08-Dec-2024 00:00:00	Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
command	08-Dec-2024 00:00:00	Substituting variable: ${bamboo.planKey} with JB-GTC0
simple	08-Dec-2024 00:00:00	Starting task 'Jalview ${bamboo.CHANNEL} distribution for Java 11' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	08-Dec-2024 00:00:00	Bamboo Artifactory Plugin version: 2.6.2
command	08-Dec-2024 00:00:00	Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job #32 (JB-GTC0-JOB1-32)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC0 clean getdown shadowJar\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=releases/Release_2_11_4_Branch\nbamboo_repository_46497969_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_repository_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GTC0-JOB1\nbamboo_shortPlanName=releases-Release_2_11_4_Branch\nbamboo_planRepository_name=Jalview Git\nLOGNAME=bamboo\nbamboo_buildNumber=32\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_repository_46497969_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch\nbamboo_shortPlanKey=GTC0\nbamboo_repository_46497969_git_username=\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_46497969_name=Jalview Git\nbamboo_buildTimeStamp=2024-12-08T00:00:00.162Z\nbamboo_repository_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultKey=JB-GTC0-JOB1-32\nbamboo_repository_branch_name=releases/Release_2_11_4_Branch\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nSHLVL=1\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_46497969_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_name=Jalview Git\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=releases/Release_2_11_4_Branch\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=releases/Release_2_11_4_Branch\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301537\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_46497969_branch_name=releases/Release_2_11_4_Branch\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planKey=JB-GTC0\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_repository_46497969_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_1_branchName=releases/Release_2_11_4_Branch\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	08-Dec-2024 00:00:01	Starting a Gradle Daemon (subsequent builds will be faster)
build	08-Dec-2024 00:00:12	
build	08-Dec-2024 00:00:12	> Configure project :
build	08-Dec-2024 00:00:12	Using properties from file './utils/channels/test-release/channel_gradle.properties'
build	08-Dec-2024 00:00:12	JALVIEW_VERSION is set to '2.11.4.1'
build	08-Dec-2024 00:00:12	HEADLESS BUILD
build	08-Dec-2024 00:00:12	J2S ENABLED
build	08-Dec-2024 00:00:12	Setting jalviewjs_ignore_transpile_errors to 'false'
build	08-Dec-2024 00:00:12	Using a TEST-RELEASE profile.
build	08-Dec-2024 00:00:14	eclipseDir exists
build	08-Dec-2024 00:00:15	
build	08-Dec-2024 00:00:15	> Task :clean
build	08-Dec-2024 00:00:15	> Task :cleanPackageDir
build	08-Dec-2024 00:00:15	> Task :getdownImagesCopy
build	08-Dec-2024 00:00:15	> Task :getdownImagesProcess
build	08-Dec-2024 00:00:15	> Task :getdownImages
build	08-Dec-2024 00:00:18	> Task :copyHelp
build	08-Dec-2024 00:00:20	> Task :buildIndices
build	08-Dec-2024 00:00:20	> Task :copyResources
build	08-Dec-2024 00:00:20	> Task :copyChannelResources
build	08-Dec-2024 00:00:20	
build	08-Dec-2024 00:00:20	> Task :createBuildProperties
build	08-Dec-2024 00:00:20	Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:00:20	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:20	
build	08-Dec-2024 00:00:20	> Task :buildResources
build	08-Dec-2024 00:00:20	> Task :copyDocs
build	08-Dec-2024 00:00:20	
build	08-Dec-2024 00:00:20	> Task :convertMdFiles
build	08-Dec-2024 00:00:20	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
build	08-Dec-2024 00:00:20	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/releaseprocess.html
build	08-Dec-2024 00:00:20	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
build	08-Dec-2024 00:00:20	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/building.html
build	08-Dec-2024 00:00:20	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/jalview-projects.html
build	08-Dec-2024 00:00:21	
build	08-Dec-2024 00:00:21	> Task :releasesTemplates
build	08-Dec-2024 00:00:21	Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:00:21	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:21	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:21	Stripping rc/test/etc for 2_11_4_1-test
build	08-Dec-2024 00:00:21	Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/help/markdown/whatsnew/whatsnew-2_11_4_1.md
build	08-Dec-2024 00:00:21	
build	08-Dec-2024 00:00:21	> Task :prepare
build	08-Dec-2024 00:00:23	
build	08-Dec-2024 00:00:23	> Task :compileJava
build	08-Dec-2024 00:00:23	Setting target compatibility to 11
error	08-Dec-2024 00:00:35	Note: Some input files use or override a deprecated API.
error	08-Dec-2024 00:00:35	Note: Recompile with -Xlint:deprecation for details.
error	08-Dec-2024 00:00:35	Note: Some input files use unchecked or unsafe operations.
error	08-Dec-2024 00:00:35	Note: Recompile with -Xlint:unchecked for details.
build	08-Dec-2024 00:00:39	
build	08-Dec-2024 00:00:39	> Task :processResources
build	08-Dec-2024 00:00:39	Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:00:39	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:39	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:39	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:39	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:39	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:39	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:39	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:39	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:39	
build	08-Dec-2024 00:00:39	> Task :classes
build	08-Dec-2024 00:00:40	
build	08-Dec-2024 00:00:40	> Task :compileLinkCheck
build	08-Dec-2024 00:00:40	Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:00:40	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:40	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:40	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/utils'. Reason: Task ':getdownImagesCopy' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:00:42	
build	08-Dec-2024 00:00:42	> Task :linkCheck
build	08-Dec-2024 00:00:42	Checking help file links
build	08-Dec-2024 00:02:48	
build	08-Dec-2024 00:02:48	Results:
build	08-Dec-2024 00:02:48	159 distinct help targets
build	08-Dec-2024 00:02:48	159 help mappings
build	08-Dec-2024 00:02:48	0 invalid targets
build	08-Dec-2024 00:02:48	32 unused targets
build	08-Dec-2024 00:02:48	    uniprotfetcher: html/features/uniprotsequencefetcher.html
build	08-Dec-2024 00:02:48	    overviewprefs: html/features/preferences.html#overview
build	08-Dec-2024 00:02:48	    cdnafeatures: html/features/codingfeatures.html
build	08-Dec-2024 00:02:48	    startupprefs: html/features/preferences.html#startup
build	08-Dec-2024 00:02:48	    ensemblfetch: html/features/ensemblsequencefetcher.html
build	08-Dec-2024 00:02:48	    io.modellerpir: html/io/modellerpir.html
build	08-Dec-2024 00:02:48	    structureandpaefromfile: html/features/structurechooser.html#loadfromfile
build	08-Dec-2024 00:02:48	    pdbmcviewer: html/features/pdbviewer.html
build	08-Dec-2024 00:02:48	    workingwithpae: html/features/paematrices.html
build	08-Dec-2024 00:02:48	    groovy.colours: html/features/groovy.html#groovyColours
build	08-Dec-2024 00:02:48	    seqmappings: html/features/seqmappings.html
build	08-Dec-2024 00:02:48	    uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts
build	08-Dec-2024 00:02:48	    splitframe.mirrorfonts: html/features/splitView.html#mirror
build	08-Dec-2024 00:02:48	    subtMatrices.pam250: html/calculations/scorematrices.html#pam250
build	08-Dec-2024 00:02:48	    search: html/features/search.html
build	08-Dec-2024 00:02:48	    viewingpdbs.reps: html/features/viewingpdbs.html#viewreps
build	08-Dec-2024 00:02:48	    alformats: html/io/fileformats.html
build	08-Dec-2024 00:02:48	    strucprefs: html/features/preferences.html#structure
build	08-Dec-2024 00:02:48	    siftsmapping: html/features/siftsmapping.html
build	08-Dec-2024 00:02:48	    chimera.annotxfer: html/features/chimera.html#annotxfer
build	08-Dec-2024 00:02:48	    pdbfts: html/features/pdbsequencefetcher.html#pdbfts
build	08-Dec-2024 00:02:48	    newkeys: html/features/newkeystrokes.html
build	08-Dec-2024 00:02:48	    importvcf.attribs: html/features/importvcf.html#attribs
build	08-Dec-2024 00:02:48	    seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature
build	08-Dec-2024 00:02:48	    structuresvia3dbeacons: html/features/structurechooser.html#3dbeaconssearch
build	08-Dec-2024 00:02:48	    jalarchive: html/features/jalarchive.html
build	08-Dec-2024 00:02:48	    newsreader: html/webServices/newsreader.html
build	08-Dec-2024 00:02:48	    jalviewcltool: html/features/commandline.html#script
build	08-Dec-2024 00:02:48	    popMenuAddref: html/menus/popupMenu.html#addrefannot
build	08-Dec-2024 00:02:48	    splitframe.virtualfeats: html/features/splitView.html#virtualfeats
build	08-Dec-2024 00:02:48	    paematrixformat: html/io/paematrixformat.html
build	08-Dec-2024 00:02:48	    overview: html/features/overview.html
build	08-Dec-2024 00:02:48	0 invalid map urls
build	08-Dec-2024 00:02:48	0 invalid image attributes
build	08-Dec-2024 00:02:48	508 internal href links (110 with anchors)
build	08-Dec-2024 00:02:48	0 invalid internal href links
build	08-Dec-2024 00:02:48	0 invalid internal anchor links
build	08-Dec-2024 00:02:48	113 external href links
build	08-Dec-2024 00:02:48	External links not verified as internet not available
build	08-Dec-2024 00:02:48	*** Success ***
build	08-Dec-2024 00:02:49	
build	08-Dec-2024 00:02:49	> Task :jar
build	08-Dec-2024 00:02:49	> Task :syncJars
build	08-Dec-2024 00:02:49	> Task :makeDist
build	08-Dec-2024 00:02:50	> Task :getdownWebsiteBuild
build	08-Dec-2024 00:02:51	
build	08-Dec-2024 00:02:51	> Task :getdownDigest
build	08-Dec-2024 00:02:51	Generating digest file './build/website/docroot/getdown/test-release/11/digest.txt'...
build	08-Dec-2024 00:02:51	Generating digest file './build/website/docroot/getdown/test-release/11/digest2.txt'...
build	08-Dec-2024 00:02:51	
build	08-Dec-2024 00:02:51	> Task :getdown
build	08-Dec-2024 00:02:51	LIKELY RSYNC COMMAND:
build	08-Dec-2024 00:02:51	mkdir -p '/Volumes/jalview/docroot/getdown/test-release/11/'
build	08-Dec-2024 00:02:51	rsync -avh --delete './build/website/docroot/getdown/test-release/11/' '/Volumes/jalview/docroot/getdown/test-release/11/'
error	08-Dec-2024 00:02:51	2024/12/08 00:02:50:382 WARNING Starting without install4j classes
error	08-Dec-2024 00:02:51	2024/12/08 00:02:50:949 WARNING Starting without install4j classes
build	08-Dec-2024 00:03:00	
build	08-Dec-2024 00:03:00	> Task :shadowJar
build	08-Dec-2024 00:03:00	
build	08-Dec-2024 00:03:00	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	08-Dec-2024 00:03:00	
build	08-Dec-2024 00:03:00	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	08-Dec-2024 00:03:00	
build	08-Dec-2024 00:03:00	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	08-Dec-2024 00:03:00	
build	08-Dec-2024 00:03:00	Execution optimizations have been disabled for 4 invalid unit(s) of work during this build to ensure correctness.
build	08-Dec-2024 00:03:00	Please consult deprecation warnings for more details.
build	08-Dec-2024 00:03:00	
build	08-Dec-2024 00:03:00	BUILD SUCCESSFUL in 2m 59s
build	08-Dec-2024 00:03:00	22 actionable tasks: 22 executed
simple	08-Dec-2024 00:03:01	Finished task 'Jalview ${bamboo.CHANNEL} distribution for Java 11' with result: Success
command	08-Dec-2024 00:03:01	Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
command	08-Dec-2024 00:03:01	Substituting variable: ${bamboo.planKey} with JB-GTC0
simple	08-Dec-2024 00:03:01	Starting task 'Jalview 1.8 build' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	08-Dec-2024 00:03:01	Bamboo Artifactory Plugin version: 2.6.2
command	08-Dec-2024 00:03:01	Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job #32 (JB-GTC0-JOB1-32)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 getdown shadowJar\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=releases/Release_2_11_4_Branch\nbamboo_repository_46497969_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_repository_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GTC0-JOB1\nbamboo_shortPlanName=releases-Release_2_11_4_Branch\nbamboo_planRepository_name=Jalview Git\nLOGNAME=bamboo\nbamboo_buildNumber=32\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_repository_46497969_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch\nbamboo_shortPlanKey=GTC0\nbamboo_repository_46497969_git_username=\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_46497969_name=Jalview Git\nbamboo_buildTimeStamp=2024-12-08T00:00:00.162Z\nbamboo_repository_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultKey=JB-GTC0-JOB1-32\nbamboo_repository_branch_name=releases/Release_2_11_4_Branch\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nSHLVL=1\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_46497969_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_name=Jalview Git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC0 clean getdown shadowJar\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=releases/Release_2_11_4_Branch\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=releases/Release_2_11_4_Branch\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301537\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_46497969_branch_name=releases/Release_2_11_4_Branch\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planKey=JB-GTC0\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_repository_46497969_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_1_branchName=releases/Release_2_11_4_Branch\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	08-Dec-2024 00:03:02	
build	08-Dec-2024 00:03:02	> Configure project :
build	08-Dec-2024 00:03:02	Using properties from file './utils/channels/test-release/channel_gradle.properties'
build	08-Dec-2024 00:03:02	JALVIEW_VERSION is set to '2.11.4.1'
build	08-Dec-2024 00:03:02	HEADLESS BUILD
build	08-Dec-2024 00:03:02	J2S ENABLED
build	08-Dec-2024 00:03:02	Setting jalviewjs_ignore_transpile_errors to 'false'
build	08-Dec-2024 00:03:02	Using a TEST-RELEASE profile.
build	08-Dec-2024 00:03:02	eclipseDir exists
build	08-Dec-2024 00:03:02	
build	08-Dec-2024 00:03:02	> Task :getdownImagesCopy
build	08-Dec-2024 00:03:02	> Task :getdownImagesProcess
build	08-Dec-2024 00:03:02	> Task :getdownImages
build	08-Dec-2024 00:03:02	> Task :cleanPackageDir
build	08-Dec-2024 00:03:02	> Task :copyHelp UP-TO-DATE
build	08-Dec-2024 00:03:03	> Task :buildIndices
build	08-Dec-2024 00:03:03	> Task :copyResources UP-TO-DATE
build	08-Dec-2024 00:03:03	> Task :copyChannelResources UP-TO-DATE
build	08-Dec-2024 00:03:03	
build	08-Dec-2024 00:03:03	> Task :createBuildProperties
build	08-Dec-2024 00:03:03	Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:03:03	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:03	
build	08-Dec-2024 00:03:03	> Task :buildResources
build	08-Dec-2024 00:03:03	> Task :copyDocs
build	08-Dec-2024 00:03:03	
build	08-Dec-2024 00:03:03	> Task :convertMdFiles
build	08-Dec-2024 00:03:03	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
build	08-Dec-2024 00:03:03	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/releaseprocess.html
build	08-Dec-2024 00:03:03	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
build	08-Dec-2024 00:03:03	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/building.html
build	08-Dec-2024 00:03:03	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build/doc/jalview-projects.html
build	08-Dec-2024 00:03:04	
build	08-Dec-2024 00:03:04	> Task :releasesTemplates
build	08-Dec-2024 00:03:04	Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:03:04	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:04	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:04	Stripping rc/test/etc for 2_11_4_1-test
build	08-Dec-2024 00:03:04	Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/help/markdown/whatsnew/whatsnew-2_11_4_1.md
build	08-Dec-2024 00:03:04	
build	08-Dec-2024 00:03:04	> Task :prepare
build	08-Dec-2024 00:03:06	
build	08-Dec-2024 00:03:06	> Task :compileJava
build	08-Dec-2024 00:03:06	Setting target compatibility to 1.8
error	08-Dec-2024 00:03:12	Note: Some input files use or override a deprecated API.
error	08-Dec-2024 00:03:12	Note: Recompile with -Xlint:deprecation for details.
error	08-Dec-2024 00:03:12	Note: Some input files use unchecked or unsafe operations.
error	08-Dec-2024 00:03:12	Note: Recompile with -Xlint:unchecked for details.
build	08-Dec-2024 00:03:15	
build	08-Dec-2024 00:03:15	> Task :processResources
build	08-Dec-2024 00:03:15	Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:03:15	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:15	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:15	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:15	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:15	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:15	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:15	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:15	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:15	
build	08-Dec-2024 00:03:15	> Task :classes
build	08-Dec-2024 00:03:16	
build	08-Dec-2024 00:03:16	> Task :compileLinkCheck
build	08-Dec-2024 00:03:16	Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:03:16	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:16	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:16	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/utils'. Reason: Task ':getdownImagesCopy' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:03:18	
build	08-Dec-2024 00:03:18	> Task :linkCheck
build	08-Dec-2024 00:03:18	Checking help file links
build	08-Dec-2024 00:05:24	
build	08-Dec-2024 00:05:24	Results:
build	08-Dec-2024 00:05:24	159 distinct help targets
build	08-Dec-2024 00:05:24	159 help mappings
build	08-Dec-2024 00:05:24	0 invalid targets
build	08-Dec-2024 00:05:24	32 unused targets
build	08-Dec-2024 00:05:24	    uniprotfetcher: html/features/uniprotsequencefetcher.html
build	08-Dec-2024 00:05:24	    overviewprefs: html/features/preferences.html#overview
build	08-Dec-2024 00:05:24	    cdnafeatures: html/features/codingfeatures.html
build	08-Dec-2024 00:05:24	    startupprefs: html/features/preferences.html#startup
build	08-Dec-2024 00:05:24	    ensemblfetch: html/features/ensemblsequencefetcher.html
build	08-Dec-2024 00:05:24	    io.modellerpir: html/io/modellerpir.html
build	08-Dec-2024 00:05:24	    structureandpaefromfile: html/features/structurechooser.html#loadfromfile
build	08-Dec-2024 00:05:24	    pdbmcviewer: html/features/pdbviewer.html
build	08-Dec-2024 00:05:24	    workingwithpae: html/features/paematrices.html
build	08-Dec-2024 00:05:24	    groovy.colours: html/features/groovy.html#groovyColours
build	08-Dec-2024 00:05:24	    seqmappings: html/features/seqmappings.html
build	08-Dec-2024 00:05:24	    uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts
build	08-Dec-2024 00:05:24	    splitframe.mirrorfonts: html/features/splitView.html#mirror
build	08-Dec-2024 00:05:24	    subtMatrices.pam250: html/calculations/scorematrices.html#pam250
build	08-Dec-2024 00:05:24	    search: html/features/search.html
build	08-Dec-2024 00:05:24	    viewingpdbs.reps: html/features/viewingpdbs.html#viewreps
build	08-Dec-2024 00:05:24	    alformats: html/io/fileformats.html
build	08-Dec-2024 00:05:24	    strucprefs: html/features/preferences.html#structure
build	08-Dec-2024 00:05:24	    siftsmapping: html/features/siftsmapping.html
build	08-Dec-2024 00:05:24	    chimera.annotxfer: html/features/chimera.html#annotxfer
build	08-Dec-2024 00:05:24	    pdbfts: html/features/pdbsequencefetcher.html#pdbfts
build	08-Dec-2024 00:05:24	    newkeys: html/features/newkeystrokes.html
build	08-Dec-2024 00:05:24	    importvcf.attribs: html/features/importvcf.html#attribs
build	08-Dec-2024 00:05:24	    seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature
build	08-Dec-2024 00:05:24	    structuresvia3dbeacons: html/features/structurechooser.html#3dbeaconssearch
build	08-Dec-2024 00:05:24	    jalarchive: html/features/jalarchive.html
build	08-Dec-2024 00:05:24	    newsreader: html/webServices/newsreader.html
build	08-Dec-2024 00:05:24	    jalviewcltool: html/features/commandline.html#script
build	08-Dec-2024 00:05:24	    popMenuAddref: html/menus/popupMenu.html#addrefannot
build	08-Dec-2024 00:05:24	    splitframe.virtualfeats: html/features/splitView.html#virtualfeats
build	08-Dec-2024 00:05:24	    paematrixformat: html/io/paematrixformat.html
build	08-Dec-2024 00:05:24	    overview: html/features/overview.html
build	08-Dec-2024 00:05:24	0 invalid map urls
build	08-Dec-2024 00:05:24	0 invalid image attributes
build	08-Dec-2024 00:05:24	508 internal href links (110 with anchors)
build	08-Dec-2024 00:05:24	0 invalid internal href links
build	08-Dec-2024 00:05:24	0 invalid internal anchor links
build	08-Dec-2024 00:05:24	113 external href links
build	08-Dec-2024 00:05:24	External links not verified as internet not available
build	08-Dec-2024 00:05:24	*** Success ***
build	08-Dec-2024 00:05:25	
build	08-Dec-2024 00:05:25	> Task :jar
build	08-Dec-2024 00:05:25	> Task :syncJars
build	08-Dec-2024 00:05:25	> Task :makeDist
build	08-Dec-2024 00:05:26	> Task :getdownWebsiteBuild
error	08-Dec-2024 00:05:27	2024/12/08 00:05:26:152 WARNING Starting without install4j classes
error	08-Dec-2024 00:05:27	2024/12/08 00:05:26:649 WARNING Starting without install4j classes
build	08-Dec-2024 00:05:27	
build	08-Dec-2024 00:05:27	> Task :getdownDigest
build	08-Dec-2024 00:05:27	Generating digest file './build/website/docroot/getdown/test-release/1.8/digest.txt'...
build	08-Dec-2024 00:05:27	Generating digest file './build/website/docroot/getdown/test-release/1.8/digest2.txt'...
build	08-Dec-2024 00:05:27	
build	08-Dec-2024 00:05:27	> Task :getdown
build	08-Dec-2024 00:05:27	LIKELY RSYNC COMMAND:
build	08-Dec-2024 00:05:27	mkdir -p '/Volumes/jalview/docroot/getdown/test-release/1.8/'
build	08-Dec-2024 00:05:27	rsync -avh --delete './build/website/docroot/getdown/test-release/1.8/' '/Volumes/jalview/docroot/getdown/test-release/1.8/'
build	08-Dec-2024 00:05:34	
build	08-Dec-2024 00:05:34	> Task :shadowJar
build	08-Dec-2024 00:05:34	
build	08-Dec-2024 00:05:34	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	08-Dec-2024 00:05:34	
build	08-Dec-2024 00:05:34	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	08-Dec-2024 00:05:34	
build	08-Dec-2024 00:05:34	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	08-Dec-2024 00:05:34	
build	08-Dec-2024 00:05:34	Execution optimizations have been disabled for 4 invalid unit(s) of work during this build to ensure correctness.
build	08-Dec-2024 00:05:34	Please consult deprecation warnings for more details.
build	08-Dec-2024 00:05:34	
build	08-Dec-2024 00:05:34	BUILD SUCCESSFUL in 2m 33s
build	08-Dec-2024 00:05:34	21 actionable tasks: 18 executed, 3 up-to-date
simple	08-Dec-2024 00:05:34	Finished task 'Jalview 1.8 build' with result: Success
command	08-Dec-2024 00:05:34	Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
command	08-Dec-2024 00:05:34	Substituting variable: ${bamboo.planKey} with JB-GTC0
simple	08-Dec-2024 00:05:34	Starting task 'JalviewJS ${bamboo.CHANNEL} release' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	08-Dec-2024 00:05:34	Bamboo Artifactory Plugin version: 2.6.2
command	08-Dec-2024 00:05:34	Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job #32 (JB-GTC0-JOB1-32)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 --info eclipse jalviewjsCreateJ2sSettings jalviewjs\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=releases/Release_2_11_4_Branch\nbamboo_repository_46497969_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_repository_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GTC0-JOB1\nbamboo_shortPlanName=releases-Release_2_11_4_Branch\nbamboo_planRepository_name=Jalview Git\nLOGNAME=bamboo\nbamboo_buildNumber=32\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_repository_46497969_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch\nbamboo_shortPlanKey=GTC0\nbamboo_repository_46497969_git_username=\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_46497969_name=Jalview Git\nbamboo_buildTimeStamp=2024-12-08T00:00:00.162Z\nbamboo_repository_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultKey=JB-GTC0-JOB1-32\nbamboo_repository_branch_name=releases/Release_2_11_4_Branch\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nSHLVL=1\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_46497969_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_name=Jalview Git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC0 clean getdown shadowJar\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=releases/Release_2_11_4_Branch\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=releases/Release_2_11_4_Branch\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301537\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_46497969_branch_name=releases/Release_2_11_4_Branch\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planKey=JB-GTC0\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_8=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 getdown shadowJar\nHOME=/home/bamboo\nbamboo_repository_46497969_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_1_branchName=releases/Release_2_11_4_Branch\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	08-Dec-2024 00:05:35	Initialized native services in: /srv/bamboo/home/bamboo/.gradle/native
build	08-Dec-2024 00:05:35	Initialized jansi services in: /srv/bamboo/home/bamboo/.gradle/native
build	08-Dec-2024 00:05:35	The client will now receive all logging from the daemon (pid: 10064). The daemon log file: /srv/bamboo/home/bamboo/.gradle/daemon/7.4.2/daemon-10064.out.log
build	08-Dec-2024 00:05:35	Starting 3rd build in daemon [uptime: 5 mins 31.635 secs, performance: 100%, non-heap usage: 34% of 256 MiB]
build	08-Dec-2024 00:05:35	Using 4 worker leases.
build	08-Dec-2024 00:05:35	Watching the file system is configured to be enabled if available
build	08-Dec-2024 00:05:35	File system watching is inactive
build	08-Dec-2024 00:05:35	Starting Build
build	08-Dec-2024 00:05:35	Settings evaluated using settings file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/settings.gradle'.
build	08-Dec-2024 00:05:35	Projects loaded. Root project using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build.gradle'.
build	08-Dec-2024 00:05:35	Included projects: [root project 'jalview']
build	08-Dec-2024 00:05:35	
build	08-Dec-2024 00:05:35	> Configure project :
build	08-Dec-2024 00:05:35	Evaluating root project 'jalview' using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build.gradle'.
build	08-Dec-2024 00:05:35	Using properties from file './utils/channels/test-release/channel_gradle.properties'
build	08-Dec-2024 00:05:35	JALVIEW_VERSION is set to '2.11.4.1'
build	08-Dec-2024 00:05:35	HEADLESS BUILD
build	08-Dec-2024 00:05:35	J2S ENABLED
build	08-Dec-2024 00:05:35	Setting jalviewjs_ignore_transpile_errors to 'false'
build	08-Dec-2024 00:05:35	Using a TEST-RELEASE profile.
build	08-Dec-2024 00:05:35	file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/main/java', not found
build	08-Dec-2024 00:05:35	eclipseDir exists
build	08-Dec-2024 00:05:35	All projects evaluated.
build	08-Dec-2024 00:05:35	Selected primary task 'eclipse' from project :
build	08-Dec-2024 00:05:35	Selected primary task 'jalviewjsCreateJ2sSettings' from project :
build	08-Dec-2024 00:05:35	Selected primary task 'jalviewjs' from project :
build	08-Dec-2024 00:05:35	Tasks to be executed: [task ':eclipseClasspath', task ':eclipseJdt', task ':eclipseProject', task ':eclipse', task ':jalviewjsCreateJ2sSettings', task ':jalviewjsEclipsePaths', task ':jalviewjsEclipseCopyDropins', task ':jalviewjsSetEclipseWorkspace', task ':jalviewjsEclipseSetup', task ':jalviewjsEnableAltFileProperty', task ':eclipseSetup', task ':jalviewjsProjectImport', task ':jalviewjsTranspile', task ':jalviewjsCopyTransferSiteJs', task ':jalviewjsTransferUnzipLib', task ':jalviewjsTransferUnzipSwingJs', task ':jalviewjsTransferUnzipAllLibs', task ':jalviewjsSyncAllLibs', task ':copyResources', task ':createBuildProperties', task ':jalviewjsSyncBuildProperties', task ':jalviewjsBuildAllCores', task ':jalviewjsPublishCoreTemplates', task ':jalviewjsSyncCore', task ':copyChannelResources', task ':buildResources', task ':jalviewjsSyncResources', task ':jalviewjsSyncSiteResources', task ':jalviewjsPrepareSite', task ':jalviewjsBuildSite', task ':cleanJalviewjsChromiumUserDir', task ':jalviewjsChromiumProfile', task ':jalviewjsCopyStderrLaunchFile', task ':jalviewjsLaunchTest', task ':jalviewjs']
build	08-Dec-2024 00:05:35	Tasks that were excluded: []
build	08-Dec-2024 00:05:36	:eclipseClasspath (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :eclipseClasspath
build	08-Dec-2024 00:05:36	Caching disabled for task ':eclipseClasspath' because:
build	08-Dec-2024 00:05:36	  Build cache is disabled
build	08-Dec-2024 00:05:36	Task ':eclipseClasspath' is not up-to-date because:
build	08-Dec-2024 00:05:36	  Task.upToDateWhen is false.
build	08-Dec-2024 00:05:36	:eclipseClasspath (Thread[Execution worker for ':',5,main]) completed. Took 0.285 secs.
build	08-Dec-2024 00:05:36	:eclipseJdt (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :eclipseJdt
build	08-Dec-2024 00:05:36	Caching disabled for task ':eclipseJdt' because:
build	08-Dec-2024 00:05:36	  Build cache is disabled
build	08-Dec-2024 00:05:36	Task ':eclipseJdt' is not up-to-date because:
build	08-Dec-2024 00:05:36	  Task.upToDateWhen is false.
build	08-Dec-2024 00:05:36	:eclipseJdt (Thread[Execution worker for ':',5,main]) completed. Took 0.087 secs.
build	08-Dec-2024 00:05:36	:eclipseProject (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :eclipseProject
build	08-Dec-2024 00:05:36	Caching disabled for task ':eclipseProject' because:
build	08-Dec-2024 00:05:36	  Build cache is disabled
build	08-Dec-2024 00:05:36	Task ':eclipseProject' is not up-to-date because:
build	08-Dec-2024 00:05:36	  Task.upToDateWhen is false.
build	08-Dec-2024 00:05:36	:eclipseProject (Thread[Execution worker for ':',5,main]) completed. Took 0.006 secs.
build	08-Dec-2024 00:05:36	:eclipse (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :eclipse
build	08-Dec-2024 00:05:36	Skipping task ':eclipse' as it has no actions.
build	08-Dec-2024 00:05:36	:eclipse (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:05:36	:jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :jalviewjsCreateJ2sSettings
build	08-Dec-2024 00:05:36	Caching disabled for task ':jalviewjsCreateJ2sSettings' because:
build	08-Dec-2024 00:05:36	  Build cache is disabled
build	08-Dec-2024 00:05:36	Task ':jalviewjsCreateJ2sSettings' is not up-to-date because:
build	08-Dec-2024 00:05:36	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/config/j2s has been removed.
build	08-Dec-2024 00:05:36	  Output property 'outputFile' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/config/j2s has been removed.
build	08-Dec-2024 00:05:36	:jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs.
build	08-Dec-2024 00:05:36	:jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :jalviewjsEclipsePaths
build	08-Dec-2024 00:05:36	Caching disabled for task ':jalviewjsEclipsePaths' because:
build	08-Dec-2024 00:05:36	  Build cache is disabled
build	08-Dec-2024 00:05:36	Task ':jalviewjsEclipsePaths' is not up-to-date because:
build	08-Dec-2024 00:05:36	  Task has not declared any outputs despite executing actions.
build	08-Dec-2024 00:05:36	Running task jalviewjsEclipsePaths as IN_ECLIPSE=false
build	08-Dec-2024 00:05:36	ECLIPSE VERSION=4.28.0
build	08-Dec-2024 00:05:36	:jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build	08-Dec-2024 00:05:36	:jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :jalviewjsEclipseCopyDropins
build	08-Dec-2024 00:05:36	Caching disabled for task ':jalviewjsEclipseCopyDropins' because:
build	08-Dec-2024 00:05:36	  Build cache is disabled
build	08-Dec-2024 00:05:36	Task ':jalviewjsEclipseCopyDropins' is not up-to-date because:
build	08-Dec-2024 00:05:36	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/eclipse_dropins has been removed.
build	08-Dec-2024 00:05:36	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/eclipse_dropins/com.seeq.eclipse.importprojects.jar has been removed.
build	08-Dec-2024 00:05:36	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/eclipse_dropins/net.sf.j2s.core-j11.jar has been removed.
build	08-Dec-2024 00:05:36	:jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) completed. Took 0.02 secs.
build	08-Dec-2024 00:05:36	:jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :jalviewjsSetEclipseWorkspace
build	08-Dec-2024 00:05:36	Caching disabled for task ':jalviewjsSetEclipseWorkspace' because:
build	08-Dec-2024 00:05:36	  Build cache is disabled
build	08-Dec-2024 00:05:36	Task ':jalviewjsSetEclipseWorkspace' is not up-to-date because:
build	08-Dec-2024 00:05:36	  Task.upToDateWhen is false.
build	08-Dec-2024 00:05:36	Running task jalviewjsSetEclipseWorkspace as IN_ECLIPSE=false
build	08-Dec-2024 00:05:36	NEW ECLIPSE WORKSPACE: /tmp/groovy-generated-tmpdir-18156185412842059215
build	08-Dec-2024 00:05:36	:jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) completed. Took 0.004 secs.
build	08-Dec-2024 00:05:36	:jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :jalviewjsEclipseSetup
build	08-Dec-2024 00:05:36	Skipping task ':jalviewjsEclipseSetup' as it has no actions.
build	08-Dec-2024 00:05:36	:jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:05:36	:jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :jalviewjsEnableAltFileProperty UP-TO-DATE
build	08-Dec-2024 00:05:36	Caching disabled for task ':jalviewjsEnableAltFileProperty' because:
build	08-Dec-2024 00:05:36	  Build cache is disabled
build	08-Dec-2024 00:05:36	Skipping task ':jalviewjsEnableAltFileProperty' as it is up-to-date.
build	08-Dec-2024 00:05:36	:jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build	08-Dec-2024 00:05:36	:eclipseSetup (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:36	
build	08-Dec-2024 00:05:36	> Task :eclipseSetup
build	08-Dec-2024 00:05:36	Skipping task ':eclipseSetup' as it has no actions.
build	08-Dec-2024 00:05:36	:eclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:05:36	:jalviewjsProjectImport (Thread[Execution worker for ':',5,main]) started.
error	08-Dec-2024 00:05:38	SLF4J: No SLF4J providers were found.
error	08-Dec-2024 00:05:38	SLF4J: Defaulting to no-operation (NOP) logger implementation
error	08-Dec-2024 00:05:38	SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
build	08-Dec-2024 00:05:38	
build	08-Dec-2024 00:05:38	> Task :jalviewjsProjectImport
build	08-Dec-2024 00:05:38	Caching disabled for task ':jalviewjsProjectImport' because:
build	08-Dec-2024 00:05:38	  Build cache is disabled
build	08-Dec-2024 00:05:38	Task ':jalviewjsProjectImport' is not up-to-date because:
build	08-Dec-2024 00:05:38	  Task.upToDateWhen is false.
build	08-Dec-2024 00:05:38	Running task jalviewjsProjectImport as IN_ECLIPSE=false
build	08-Dec-2024 00:05:38	Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application com.seeq.eclipse.importprojects.headlessimport -data /tmp/groovy-generated-tmpdir-18156185412842059215 -import /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s
build	08-Dec-2024 00:05:38	Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''
build	08-Dec-2024 00:05:48	:jalviewjsProjectImport (Thread[Execution worker for ':',5,main]) completed. Took 12.264 secs.
build	08-Dec-2024 00:05:48	:jalviewjsTranspile (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:05:50	
build	08-Dec-2024 00:05:50	> Task :jalviewjsTranspile
build	08-Dec-2024 00:05:50	Caching disabled for task ':jalviewjsTranspile' because:
build	08-Dec-2024 00:05:50	  Build cache is disabled
build	08-Dec-2024 00:05:50	Task ':jalviewjsTranspile' is not up-to-date because:
build	08-Dec-2024 00:05:50	  Task.upToDateWhen is false.
build	08-Dec-2024 00:05:50	Running task jalviewjsTranspile as IN_ECLIPSE=false
build	08-Dec-2024 00:05:50	Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application org.eclipse.jdt.apt.core.aptBuild -data /tmp/groovy-generated-tmpdir-18156185412842059215 -cleanBuild jalview --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s
build	08-Dec-2024 00:05:50	Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''
error	08-Dec-2024 00:05:50	SLF4J: No SLF4J providers were found.
error	08-Dec-2024 00:05:50	SLF4J: Defaulting to no-operation (NOP) logger implementation
error	08-Dec-2024 00:05:50	SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
build	08-Dec-2024 00:05:51	Invoking 'Java Builder' on '/jalview'.
build	08-Dec-2024 00:05:52	net.sf.j2s.core.3.3.1/3.3.1-v1 started
build	08-Dec-2024 00:05:52	J2S CompilationParticipant started
build	08-Dec-2024 00:05:52	J2S isActive true /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 
build	08-Dec-2024 00:05:52	J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1
build	08-Dec-2024 00:05:53	J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1
build	08-Dec-2024 00:05:53	Cleaning output folder for jalview
build	08-Dec-2024 00:05:53	Build done
build	08-Dec-2024 00:05:53	Invoking 'Gradle Project Builder' on '/jalview'.
build	08-Dec-2024 00:05:54	Invoking 'Java Builder' on '/jalview'.
build	08-Dec-2024 00:05:54	J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1
build	08-Dec-2024 00:05:54	Preparing to build jalview
build	08-Dec-2024 00:05:54	Cleaning output folder for jalview
build	08-Dec-2024 00:05:54	J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1
build	08-Dec-2024 00:05:54	Copying resources to the output folder
build	08-Dec-2024 00:05:54	Analyzing sources
build	08-Dec-2024 00:05:54	J2S buildStarting 1103 files, contexts.size() = 1, isBatch=true
build	08-Dec-2024 00:05:54	Compiling jalview/src/com/github/reinert/jjschema
build	08-Dec-2024 00:05:56	Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 1 warning) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 2 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 3 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 4 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 5 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 9 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 12 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 13 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 14 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 15 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 37 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 38 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 46 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 47 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 48 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 49 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 50 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 51 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 52 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 59 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 63 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 67 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 69 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 89 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 90 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 91 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 98 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 108 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 113 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 114 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 115 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 119 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 120 warnings) Compiling jalview/src/com/stevesoft/pat
build	08-Dec-2024 00:05:56	(Found 120 warnings) Compiling jalview/src/com/stevesoft/pat/wrap
build	08-Dec-2024 00:05:56	(Found 124 warnings) Compiling jalview/src/darrylbu/util
build	08-Dec-2024 00:05:56	(Found 124 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	08-Dec-2024 00:05:56	(Found 126 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	08-Dec-2024 00:05:56	(Found 133 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	08-Dec-2024 00:05:56	(Found 136 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2/port
build	08-Dec-2024 00:05:56	(Found 136 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 143 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 150 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 188 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 195 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 251 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 283 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 290 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 358 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 361 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 364 warnings) Compiling jalview/src/ext/vamsas
build	08-Dec-2024 00:05:56	(Found 366 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:56	(Found 370 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 375 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 380 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 413 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 421 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 422 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 423 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 424 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 426 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 427 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 428 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 434 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 441 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 467 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 471 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 472 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 507 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 571 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 572 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 578 warnings) Compiling jalview/src/jalview/analysis
build	08-Dec-2024 00:05:57	(Found 578 warnings) Compiling jalview/src/jalview/analysis/scoremodels
build	08-Dec-2024 00:05:57	(Found 581 warnings) Compiling jalview/src/jalview/analysis/scoremodels
build	08-Dec-2024 00:05:57	(Found 591 warnings) Compiling jalview/src/jalview/analytics
build	08-Dec-2024 00:05:57	(Found 591 warnings) Compiling jalview/src/jalview/api
build	08-Dec-2024 00:05:57	(Found 591 warnings) Compiling jalview/src/jalview/api/analysis
build	08-Dec-2024 00:05:57	(Found 593 warnings) Compiling jalview/src/jalview/api/structures
build	08-Dec-2024 00:05:57	(Found 596 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 652 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 661 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 662 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 667 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 668 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 670 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 681 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 683 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 688 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 689 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 690 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 691 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 693 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 695 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 696 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 698 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 699 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 704 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 705 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 706 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 708 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 709 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 711 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 719 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 729 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 730 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:57	(Found 731 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:58	(Found 733 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:58	(Found 734 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:58	(Found 739 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:58	(Found 742 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:58	(Found 779 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:58	(Found 781 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:58	(Found 782 warnings) Compiling jalview/src/jalview/appletgui
build	08-Dec-2024 00:05:58	(Found 782 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 786 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 789 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 790 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 797 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 799 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 3 errors + 857 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 3 errors + 862 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 3 errors + 864 warnings) Compiling jalview/src/jalview/bin
build	08-Dec-2024 00:05:58	(Found 3 errors + 864 warnings) Compiling jalview/src/jalview/bin/argparser
build	08-Dec-2024 00:05:58	(Found 3 errors + 865 warnings) Compiling jalview/src/jalview/bin/argparser
build	08-Dec-2024 00:05:58	(Found 3 errors + 867 warnings) Compiling jalview/src/jalview/bin/argparser
build	08-Dec-2024 00:05:58	(Found 3 errors + 868 warnings) Compiling jalview/src/jalview/bin/argparser
build	08-Dec-2024 00:05:58	(Found 3 errors + 868 warnings) Compiling jalview/src/jalview/bin/groovy
build	08-Dec-2024 00:05:58	(Found 3 errors + 868 warnings) Compiling jalview/src/jalview/commands
build	08-Dec-2024 00:05:58	(Found 3 errors + 868 warnings) Compiling jalview/src/jalview/controller
build	08-Dec-2024 00:05:58	(Found 3 errors + 868 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 881 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 882 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 883 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 886 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 887 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 888 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 894 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 898 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 900 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 901 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 902 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 903 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 908 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 909 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 917 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 918 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 919 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 922 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 928 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 932 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 936 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 938 warnings) Compiling jalview/src/jalview/datamodel
build	08-Dec-2024 00:05:58	(Found 3 errors + 939 warnings) Compiling jalview/src/jalview/datamodel/annotations
build	08-Dec-2024 00:05:58	(Found 3 errors + 939 warnings) Compiling jalview/src/jalview/datamodel/features
build	08-Dec-2024 00:05:58	(Found 3 errors + 939 warnings) Compiling jalview/src/jalview/exceptions
build	08-Dec-2024 00:05:58	(Found 3 errors + 939 warnings) Compiling jalview/src/jalview/ext/android
build	08-Dec-2024 00:05:58	(Found 3 errors + 939 warnings) Compiling jalview/src/jalview/ext/ensembl
build	08-Dec-2024 00:05:58	(Found 3 errors + 941 warnings) Compiling jalview/src/jalview/ext/ensembl
build	08-Dec-2024 00:05:58	(Found 3 errors + 943 warnings) Compiling jalview/src/jalview/ext/ensembl
build	08-Dec-2024 00:05:58	(Found 3 errors + 944 warnings) Compiling jalview/src/jalview/ext/ensembl
build	08-Dec-2024 00:05:59	(Found 3 errors + 946 warnings) Compiling jalview/src/jalview/ext/ensembl
build	08-Dec-2024 00:05:59	(Found 3 errors + 949 warnings) Compiling jalview/src/jalview/ext/htsjdk
build	08-Dec-2024 00:05:59	(Found 3 errors + 950 warnings) Compiling jalview/src/jalview/ext/htsjdk
build	08-Dec-2024 00:05:59	(Found 3 errors + 955 warnings) Compiling jalview/src/jalview/ext/jmol
build	08-Dec-2024 00:05:59	(Found 3 errors + 959 warnings) Compiling jalview/src/jalview/ext/paradise
build	08-Dec-2024 00:05:59	(Found 3 errors + 959 warnings) Compiling jalview/src/jalview/ext/pymol
build	08-Dec-2024 00:05:59	(Found 3 errors + 961 warnings) Compiling jalview/src/jalview/ext/pymol
build	08-Dec-2024 00:05:59	(Found 3 errors + 961 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	08-Dec-2024 00:05:59	(Found 3 errors + 962 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	08-Dec-2024 00:05:59	(Found 3 errors + 963 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	08-Dec-2024 00:05:59	(Found 3 errors + 963 warnings) Compiling jalview/src/jalview/ext/so
build	08-Dec-2024 00:05:59	(Found 3 errors + 963 warnings) Compiling jalview/src/jalview/ext/varna
build	08-Dec-2024 00:05:59	(Found 3 errors + 963 warnings) Compiling jalview/src/jalview/fts/api
build	08-Dec-2024 00:05:59	(Found 3 errors + 964 warnings) Compiling jalview/src/jalview/fts/api
build	08-Dec-2024 00:05:59	(Found 3 errors + 965 warnings) Compiling jalview/src/jalview/fts/core
build	08-Dec-2024 00:05:59	(Found 3 errors + 968 warnings) Compiling jalview/src/jalview/fts/core
build	08-Dec-2024 00:05:59	(Found 3 errors + 969 warnings) Compiling jalview/src/jalview/fts/core
build	08-Dec-2024 00:05:59	(Found 3 errors + 970 warnings) Compiling jalview/src/jalview/fts/core
build	08-Dec-2024 00:05:59	(Found 3 errors + 970 warnings) Compiling jalview/src/jalview/fts/service/alphafold
build	08-Dec-2024 00:05:59	(Found 3 errors + 970 warnings) Compiling jalview/src/jalview/fts/service/pdb
build	08-Dec-2024 00:05:59	(Found 3 errors + 977 warnings) Compiling jalview/src/jalview/fts/service/pdb
build	08-Dec-2024 00:05:59	(Found 3 errors + 977 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	08-Dec-2024 00:05:59	(Found 3 errors + 979 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	08-Dec-2024 00:05:59	(Found 3 errors + 983 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	08-Dec-2024 00:05:59	(Found 3 errors + 987 warnings) Compiling jalview/src/jalview/fts/service/uniprot
build	08-Dec-2024 00:05:59	(Found 3 errors + 987 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 988 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 990 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 991 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 992 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 993 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 994 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 995 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 996 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1002 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1004 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1005 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1006 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1015 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1045 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1055 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1056 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1057 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1058 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1063 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1064 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:05:59	(Found 3 errors + 1065 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1070 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1071 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1075 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1080 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1081 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1083 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1084 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1085 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1086 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1087 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1093 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1094 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1095 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1096 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1097 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1099 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1100 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1101 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1104 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1106 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1113 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1115 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1117 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1118 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1119 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1121 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1125 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1134 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1143 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1146 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1147 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1148 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1150 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1151 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1153 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1159 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1162 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1163 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1201 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1206 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1207 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1234 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1237 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1244 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1302 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1315 warnings) Compiling jalview/src/jalview/gui
build	08-Dec-2024 00:06:00	(Found 3 errors + 1317 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	08-Dec-2024 00:06:00	(Found 3 errors + 1319 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	08-Dec-2024 00:06:00	(Found 3 errors + 1324 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	08-Dec-2024 00:06:00	(Found 3 errors + 1324 warnings) Compiling jalview/src/jalview/httpserver
build	08-Dec-2024 00:06:00	(Found 3 errors + 1324 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:00	(Found 3 errors + 1329 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:00	(Found 3 errors + 1331 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:00	(Found 3 errors + 1333 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:00	(Found 3 errors + 1335 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:00	(Found 3 errors + 1355 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1357 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1359 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1363 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1366 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1367 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1368 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1369 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1407 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1410 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1412 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1432 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1465 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1467 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1469 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1470 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1471 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1484 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1546 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1547 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1548 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1630 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1635 warnings) Compiling jalview/src/jalview/io
build	08-Dec-2024 00:06:01	(Found 3 errors + 1635 warnings) Compiling jalview/src/jalview/io/cache
build	08-Dec-2024 00:06:01	(Found 3 errors + 1636 warnings) Compiling jalview/src/jalview/io/exceptions
build	08-Dec-2024 00:06:01	(Found 3 errors + 1636 warnings) Compiling jalview/src/jalview/io/gff
build	08-Dec-2024 00:06:01	(Found 3 errors + 1637 warnings) Compiling jalview/src/jalview/io/gff
build	08-Dec-2024 00:06:01	(Found 3 errors + 1637 warnings) Compiling jalview/src/jalview/io/packed
build	08-Dec-2024 00:06:01	(Found 3 errors + 1643 warnings) Compiling jalview/src/jalview/io/packed
build	08-Dec-2024 00:06:01	(Found 3 errors + 1645 warnings) Compiling jalview/src/jalview/io/packed
build	08-Dec-2024 00:06:01	(Found 3 errors + 1645 warnings) Compiling jalview/src/jalview/io/vamsas
build	08-Dec-2024 00:06:01	(Found 3 errors + 1663 warnings) Compiling jalview/src/jalview/io/vamsas
build	08-Dec-2024 00:06:01	(Found 3 errors + 1674 warnings) Compiling jalview/src/jalview/io/vamsas
build	08-Dec-2024 00:06:01	(Found 3 errors + 1675 warnings) Compiling jalview/src/jalview/io/vamsas
build	08-Dec-2024 00:06:01	(Found 3 errors + 1688 warnings) Compiling jalview/src/jalview/io/vamsas
build	08-Dec-2024 00:06:01	(Found 3 errors + 1692 warnings) Compiling jalview/src/jalview/io/vamsas
build	08-Dec-2024 00:06:01	(Found 3 errors + 1696 warnings) Compiling jalview/src/jalview/io/vamsas
build	08-Dec-2024 00:06:01	(Found 3 errors + 1719 warnings) Compiling jalview/src/jalview/io/vamsas
build	08-Dec-2024 00:06:01	(Found 3 errors + 1722 warnings) Compiling jalview/src/jalview/io/vcf
build	08-Dec-2024 00:06:01	(Found 4 errors + 1731 warnings) Compiling jalview/src/jalview/javascript
build	08-Dec-2024 00:06:01	(Found 4 errors + 1735 warnings) Compiling jalview/src/jalview/javascript
build	08-Dec-2024 00:06:01	(Found 4 errors + 1736 warnings) Compiling jalview/src/jalview/javascript/json
build	08-Dec-2024 00:06:01	(Found 4 errors + 1736 warnings) Compiling jalview/src/jalview/javascript/web
build	08-Dec-2024 00:06:01	(Found 4 errors + 1737 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1738 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1739 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1742 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1743 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1744 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1745 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1746 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1749 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1751 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1759 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1760 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1761 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1766 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1768 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1769 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1772 warnings) Compiling jalview/src/jalview/jbgui
build	08-Dec-2024 00:06:01	(Found 4 errors + 1772 warnings) Compiling jalview/src/jalview/json/binding/biojs
build	08-Dec-2024 00:06:01	(Found 4 errors + 1772 warnings) Compiling jalview/src/jalview/json/binding/biojson/v1
build	08-Dec-2024 00:06:01	(Found 4 errors + 1775 warnings) Compiling jalview/src/jalview/log
build	08-Dec-2024 00:06:01	(Found 4 errors + 1777 warnings) Compiling jalview/src/jalview/log
build	08-Dec-2024 00:06:01	(Found 4 errors + 1778 warnings) Compiling jalview/src/jalview/log
build	08-Dec-2024 00:06:01	(Found 4 errors + 1778 warnings) Compiling jalview/src/jalview/math
build	08-Dec-2024 00:06:01	(Found 4 errors + 1779 warnings) Compiling jalview/src/jalview/math
build	08-Dec-2024 00:06:01	(Found 4 errors + 1780 warnings) Compiling jalview/src/jalview/math
build	08-Dec-2024 00:06:02	(Found 4 errors + 1806 warnings) Compiling jalview/src/jalview/project
build	08-Dec-2024 00:06:02	(Found 4 errors + 1807 warnings) Compiling jalview/src/jalview/renderer
build	08-Dec-2024 00:06:02	(Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/renderer
build	08-Dec-2024 00:06:02	(Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/renderer/api
build	08-Dec-2024 00:06:02	(Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/renderer/seqfeatures
build	08-Dec-2024 00:06:02	(Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/rest
build	08-Dec-2024 00:06:02	(Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/schemes
build	08-Dec-2024 00:06:02	(Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/schemes
build	08-Dec-2024 00:06:02	(Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/structure
build	08-Dec-2024 00:06:02	(Found 4 errors + 1812 warnings) Compiling jalview/src/jalview/structure
build	08-Dec-2024 00:06:02	(Found 4 errors + 1813 warnings) Compiling jalview/src/jalview/structure
build	08-Dec-2024 00:06:02	(Found 4 errors + 1818 warnings) Compiling jalview/src/jalview/structure
build	08-Dec-2024 00:06:02	(Found 4 errors + 1819 warnings) Compiling jalview/src/jalview/structures/models
build	08-Dec-2024 00:06:02	(Found 4 errors + 1819 warnings) Compiling jalview/src/jalview/urls
build	08-Dec-2024 00:06:02	(Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/urls
build	08-Dec-2024 00:06:02	(Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/urls/api
build	08-Dec-2024 00:06:02	(Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/urls/applet
build	08-Dec-2024 00:06:02	(Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/urls/desktop
build	08-Dec-2024 00:06:02	(Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1821 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1822 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1828 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1829 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1841 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1842 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1846 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1851 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1854 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1855 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1858 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1862 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1866 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1890 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util/dialogrunner
build	08-Dec-2024 00:06:02	(Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util/imagemaker
build	08-Dec-2024 00:06:02	(Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util
build	08-Dec-2024 00:06:02	(Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util/matcher
build	08-Dec-2024 00:06:02	(Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/viewmodel
build	08-Dec-2024 00:06:02	(Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/viewmodel
build	08-Dec-2024 00:06:02	(Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/viewmodel/annotationfilter
build	08-Dec-2024 00:06:02	(Found 4 errors + 1895 warnings) Compiling jalview/src/jalview/viewmodel/seqfeatures
build	08-Dec-2024 00:06:02	(Found 4 errors + 1895 warnings) Compiling jalview/src/jalview/viewmodel/styles
build	08-Dec-2024 00:06:02	(Found 4 errors + 1895 warnings) Compiling jalview/src/jalview/workers
build	08-Dec-2024 00:06:02	(Found 4 errors + 1899 warnings) Compiling jalview/src/jalview/workers
build	08-Dec-2024 00:06:02	(Found 4 errors + 1899 warnings) Compiling jalview/src/jalview/ws
build	08-Dec-2024 00:06:02	(Found 4 errors + 1901 warnings) Compiling jalview/src/jalview/ws
build	08-Dec-2024 00:06:02	(Found 4 errors + 1905 warnings) Compiling jalview/src/jalview/ws
build	08-Dec-2024 00:06:02	(Found 4 errors + 1905 warnings) Compiling jalview/src/jalview/ws/datamodel
build	08-Dec-2024 00:06:02	(Found 4 errors + 1908 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold
build	08-Dec-2024 00:06:02	(Found 4 errors + 1913 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold
build	08-Dec-2024 00:06:02	(Found 4 errors + 1918 warnings) Compiling jalview/src/jalview/ws/dbsources
build	08-Dec-2024 00:06:02	(Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/ws/dbsources
build	08-Dec-2024 00:06:02	(Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/ws/ebi
build	08-Dec-2024 00:06:02	(Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/ws/io/mime
build	08-Dec-2024 00:06:02	(Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/ws/jws1
build	08-Dec-2024 00:06:02	(Found 4 errors + 1923 warnings) Compiling jalview/src/jalview/ws/jws1
build	08-Dec-2024 00:06:02	(Found 4 errors + 1931 warnings) Compiling jalview/src/jalview/ws/jws1
build	08-Dec-2024 00:06:02	(Found 4 errors + 1944 warnings) Compiling jalview/src/jalview/ws/jws1
build	08-Dec-2024 00:06:02	(Found 4 errors + 1958 warnings) Compiling jalview/src/jalview/ws/jws1
build	08-Dec-2024 00:06:02	(Found 4 errors + 1964 warnings) Compiling jalview/src/jalview/ws/jws1
build	08-Dec-2024 00:06:02	(Found 4 errors + 1965 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:02	(Found 4 errors + 1966 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:02	(Found 4 errors + 1976 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:02	(Found 4 errors + 1983 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 1997 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2000 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2004 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2010 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2016 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2028 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2030 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2034 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2060 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2083 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2084 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2089 warnings) Compiling jalview/src/jalview/ws/jws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2095 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	08-Dec-2024 00:06:03	(Found 4 errors + 2099 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	08-Dec-2024 00:06:03	(Found 4 errors + 2102 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	08-Dec-2024 00:06:03	(Found 4 errors + 2113 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	08-Dec-2024 00:06:03	(Found 4 errors + 2120 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2
build	08-Dec-2024 00:06:03	(Found 4 errors + 2120 warnings) Compiling jalview/src/jalview/ws/params
build	08-Dec-2024 00:06:03	(Found 4 errors + 2121 warnings) Compiling jalview/src/jalview/ws/params
build	08-Dec-2024 00:06:03	(Found 4 errors + 2121 warnings) Compiling jalview/src/jalview/ws/params/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2122 warnings) Compiling jalview/src/jalview/ws/params/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2122 warnings) Compiling jalview/src/jalview/ws/rest
build	08-Dec-2024 00:06:03	(Found 4 errors + 2123 warnings) Compiling jalview/src/jalview/ws/rest
build	08-Dec-2024 00:06:03	(Found 4 errors + 2128 warnings) Compiling jalview/src/jalview/ws/rest
build	08-Dec-2024 00:06:03	(Found 4 errors + 2129 warnings) Compiling jalview/src/jalview/ws/rest
build	08-Dec-2024 00:06:03	(Found 4 errors + 2130 warnings) Compiling jalview/src/jalview/ws/rest
build	08-Dec-2024 00:06:03	(Found 4 errors + 2136 warnings) Compiling jalview/src/jalview/ws/rest
build	08-Dec-2024 00:06:03	(Found 4 errors + 2145 warnings) Compiling jalview/src/jalview/ws/rest
build	08-Dec-2024 00:06:03	(Found 4 errors + 2151 warnings) Compiling jalview/src/jalview/ws/rest
build	08-Dec-2024 00:06:03	(Found 4 errors + 2151 warnings) Compiling jalview/src/jalview/ws/rest/params
build	08-Dec-2024 00:06:03	(Found 4 errors + 2154 warnings) Compiling jalview/src/jalview/ws/seqfetcher
build	08-Dec-2024 00:06:03	(Found 4 errors + 2154 warnings) Compiling jalview/src/jalview/ws/sifts
build	08-Dec-2024 00:06:03	(Found 4 errors + 2156 warnings) Compiling jalview/src/jalview/ws/sifts
build	08-Dec-2024 00:06:03	(Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/ws/uimodel
build	08-Dec-2024 00:06:03	(Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/ws/utils
build	08-Dec-2024 00:06:03	(Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/xml/binding/embl
build	08-Dec-2024 00:06:03	(Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/xml/binding/jalview
build	08-Dec-2024 00:06:03	(Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/xml/binding/sifts
build	08-Dec-2024 00:06:03	(Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/xml/binding/uniprot
build	08-Dec-2024 00:06:03	(Found 4 errors + 2166 warnings) Compiling jalview/src/mc_view
build	08-Dec-2024 00:06:03	(Found 4 errors + 2167 warnings) Compiling jalview/src/mc_view
build	08-Dec-2024 00:06:03	(Found 4 errors + 2172 warnings) Compiling jalview/src/mc_view
build	08-Dec-2024 00:06:03	(Found 4 errors + 2179 warnings) Compiling jalview/src/mc_view
build	08-Dec-2024 00:06:03	(Found 4 errors + 2180 warnings) Compiling jalview/src/mc_view
build	08-Dec-2024 00:06:03	(Found 4 errors + 2181 warnings) Compiling jalview/src/mc_view
build	08-Dec-2024 00:06:03	(Found 4 errors + 2181 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	08-Dec-2024 00:06:03	(Found 4 errors + 2182 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	08-Dec-2024 00:06:03	(Found 4 errors + 2188 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	08-Dec-2024 00:06:03	(Found 4 errors + 2188 warnings) Compiling jalview/src/org/json
build	08-Dec-2024 00:06:03	(Found 4 errors + 2190 warnings) Compiling jalview/src/org/json
build	08-Dec-2024 00:06:03	(Found 4 errors + 2191 warnings) Compiling jalview/src/org/json
build	08-Dec-2024 00:06:03	(Found 4 errors + 2202 warnings) Compiling jalview/src/org/json/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2208 warnings) Compiling jalview/src/org/json/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2217 warnings) Compiling jalview/src/org/json/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2219 warnings) Compiling jalview/src/org/json/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2221 warnings) Compiling jalview/src/org/json/simple/parser
build	08-Dec-2024 00:06:03	(Found 4 errors + 2296 warnings) Compiling jalview/src/org/json/simple/parser
build	08-Dec-2024 00:06:03	(Found 4 errors + 2300 warnings) Compiling jalview/src/org/json/simple/parser
build	08-Dec-2024 00:06:03	(Found 4 errors + 2300 warnings) Compiling jalview/src/org/stackoverflowusers/file
build	08-Dec-2024 00:06:03	(Found 4 errors + 2300 warnings) Compiling jalview/src/swingjs/api
build	08-Dec-2024 00:06:03	(Found 4 errors + 2300 warnings) Compiling jalview/src/swingjs/api/js
build	08-Dec-2024 00:06:03	(Found 4 errors + 2301 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	08-Dec-2024 00:06:03	(Found 4 errors + 2303 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	08-Dec-2024 00:06:03	(Found 4 errors + 2304 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	08-Dec-2024 00:06:03	(Found 4 errors + 2306 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	08-Dec-2024 00:06:03	(Found 4 errors + 2309 warnings) Compiling jalview/src/uk/ac/ebi/www
build	08-Dec-2024 00:06:03	(Found 4 errors + 2312 warnings) Compiling jalview/src/uk/ac/ebi/www
build	08-Dec-2024 00:06:03	(Found 4 errors + 2315 warnings) Compiling jalview/src/uk/ac/ebi/www
build	08-Dec-2024 00:06:03	(Found 4 errors + 2322 warnings) Compiling jalview/src/uk/ac/ebi/www
build	08-Dec-2024 00:06:03	(Found 4 errors + 2370 warnings) Compiling jalview/src/uk/ac/ebi/www
build	08-Dec-2024 00:06:03	(Found 4 errors + 2412 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService
build	08-Dec-2024 00:06:03	(Found 4 errors + 2419 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService
build	08-Dec-2024 00:06:03	(Found 4 errors + 2419 warnings) Compiling jalview/src/vamsas
build	08-Dec-2024 00:06:03	(Found 4 errors + 2420 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2422 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2423 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2425 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2426 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2428 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2429 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2431 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2432 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2434 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2435 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2437 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2438 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2440 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2441 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2443 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2444 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2445 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2447 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2449 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2450 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2452 warnings) Compiling jalview/src/vamsas/objects/simple
build	08-Dec-2024 00:06:03	(Found 4 errors + 2452 warnings) Cleaning output folder for jalview
build	08-Dec-2024 00:06:03	(Found 4 errors + 2452 warnings) Copying resources to the output folder
build	08-Dec-2024 00:06:05	(Found 4 errors + 2452 warnings) Analyzing sources
build	08-Dec-2024 00:06:05	J2S buildStarting 291 files, contexts.size() = 2, isBatch=true
build	08-Dec-2024 00:06:05	(Found 4 errors + 2452 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2460 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2462 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2475 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2488 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2489 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2491 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2532 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2534 warnings) Compiling jalview/test/jalview/analysis
build	08-Dec-2024 00:06:05	(Found 4 errors + 2534 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	08-Dec-2024 00:06:05	(Found 4 errors + 2539 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	08-Dec-2024 00:06:05	(Found 4 errors + 2540 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	08-Dec-2024 00:06:05	(Found 4 errors + 2546 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	08-Dec-2024 00:06:05	(Found 4 errors + 2547 warnings) Compiling jalview/test/jalview/bin
build	08-Dec-2024 00:06:05	(Found 4 errors + 2548 warnings) Compiling jalview/test/jalview/bin
build	08-Dec-2024 00:06:05	(Found 4 errors + 2549 warnings) Compiling jalview/test/jalview/bin
build	08-Dec-2024 00:06:05	(Found 4 errors + 2552 warnings) Compiling jalview/test/jalview/bin/argparser
build	08-Dec-2024 00:06:05	(Found 4 errors + 2559 warnings) Compiling jalview/test/jalview/commands
build	08-Dec-2024 00:06:05	(Found 4 errors + 2560 warnings) Compiling jalview/test/jalview/controller
build	08-Dec-2024 00:06:05	(Found 4 errors + 2560 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2561 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2574 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2575 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2577 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2586 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2587 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2589 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2590 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2592 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2593 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2594 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2597 warnings) Compiling jalview/test/jalview/datamodel
build	08-Dec-2024 00:06:05	(Found 4 errors + 2598 warnings) Compiling jalview/test/jalview/datamodel/features
build	08-Dec-2024 00:06:06	(Found 4 errors + 2599 warnings) Compiling jalview/test/jalview/datamodel/features
build	08-Dec-2024 00:06:06	(Found 4 errors + 2599 warnings) Compiling jalview/test/jalview/ext/android
build	08-Dec-2024 00:06:06	(Found 4 errors + 2599 warnings) Compiling jalview/test/jalview/ext/ensembl
build	08-Dec-2024 00:06:06	(Found 4 errors + 2599 warnings) Compiling jalview/test/jalview/ext/htsjdk
build	08-Dec-2024 00:06:06	(Found 4 errors + 2600 warnings) Compiling jalview/test/jalview/ext/jmol
build	08-Dec-2024 00:06:06	(Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/jmol
build	08-Dec-2024 00:06:06	(Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/paradise
build	08-Dec-2024 00:06:06	(Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/pymol
build	08-Dec-2024 00:06:06	(Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/rbvi/chimera
build	08-Dec-2024 00:06:06	(Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/so
build	08-Dec-2024 00:06:06	(Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/fts/core
build	08-Dec-2024 00:06:06	(Found 4 errors + 2602 warnings) Compiling jalview/test/jalview/fts/service/pdb
build	08-Dec-2024 00:06:06	(Found 4 errors + 2603 warnings) Compiling jalview/test/jalview/fts/service/pdb
build	08-Dec-2024 00:06:06	(Found 4 errors + 2610 warnings) Compiling jalview/test/jalview/fts/threedbeacons
build	08-Dec-2024 00:06:06	(Found 4 errors + 2615 warnings) Compiling jalview/test/jalview/fts/threedbeacons
build	08-Dec-2024 00:06:06	(Found 4 errors + 2615 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2617 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2619 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2620 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2640 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2665 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2666 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2669 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2670 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2672 warnings) Compiling jalview/test/jalview/gui
build	08-Dec-2024 00:06:06	(Found 4 errors + 2678 warnings) Compiling jalview/test/jalview/gui/structurechooser
build	08-Dec-2024 00:06:06	(Found 4 errors + 2679 warnings) Compiling jalview/test/jalview/io
build	08-Dec-2024 00:06:06	(Found 4 errors + 2680 warnings) Compiling jalview/test/jalview/io
build	08-Dec-2024 00:06:06	(Found 4 errors + 2684 warnings) Compiling jalview/test/jalview/io
build	08-Dec-2024 00:06:06	(Found 4 errors + 2688 warnings) Compiling jalview/test/jalview/io
build	08-Dec-2024 00:06:06	(Found 4 errors + 2690 warnings) Compiling jalview/test/jalview/io
build	08-Dec-2024 00:06:06	(Found 4 errors + 2691 warnings) Compiling jalview/test/jalview/io
build	08-Dec-2024 00:06:06	(Found 4 errors + 2697 warnings) Compiling jalview/test/jalview/io
build	08-Dec-2024 00:06:06	(Found 4 errors + 2699 warnings) Compiling jalview/test/jalview/io
build	08-Dec-2024 00:06:06	(Found 4 errors + 2699 warnings) Compiling jalview/test/jalview/io/cache
build	08-Dec-2024 00:06:06	(Found 4 errors + 2699 warnings) Compiling jalview/test/jalview/io/gff
build	08-Dec-2024 00:06:06	(Found 4 errors + 2700 warnings) Compiling jalview/test/jalview/io/gff
build	08-Dec-2024 00:06:06	(Found 4 errors + 2709 warnings) Compiling jalview/test/jalview/io/vcf
build	08-Dec-2024 00:06:06	(Found 4 errors + 2709 warnings) Compiling jalview/test/jalview/math
build	08-Dec-2024 00:06:06	(Found 4 errors + 2713 warnings) Compiling jalview/test/jalview/project
build	08-Dec-2024 00:06:06	(Found 4 errors + 2714 warnings) Compiling jalview/test/jalview/renderer
build	08-Dec-2024 00:06:06	(Found 4 errors + 2721 warnings) Compiling jalview/test/jalview/renderer
build	08-Dec-2024 00:06:06	(Found 4 errors + 2721 warnings) Compiling jalview/test/jalview/renderer/seqfeatures
build	08-Dec-2024 00:06:06	(Found 4 errors + 2721 warnings) Compiling jalview/test/jalview/schemes
build	08-Dec-2024 00:06:06	(Found 4 errors + 2721 warnings) Compiling jalview/test/jalview/structure
build	08-Dec-2024 00:06:06	(Found 4 errors + 2723 warnings) Compiling jalview/test/jalview/structure
build	08-Dec-2024 00:06:06	(Found 4 errors + 2724 warnings) Compiling jalview/test/jalview/structure
build	08-Dec-2024 00:06:06	(Found 4 errors + 2725 warnings) Compiling jalview/test/jalview/structure
build	08-Dec-2024 00:06:06	(Found 4 errors + 2728 warnings) Compiling jalview/test/jalview/structure
build	08-Dec-2024 00:06:06	(Found 4 errors + 2728 warnings) Compiling jalview/test/jalview/structures/models
build	08-Dec-2024 00:06:06	(Found 4 errors + 2729 warnings) Compiling jalview/test/jalview/urls
build	08-Dec-2024 00:06:06	(Found 4 errors + 2734 warnings) Compiling jalview/test/jalview/urls
build	08-Dec-2024 00:06:06	(Found 4 errors + 2739 warnings) Compiling jalview/test/jalview/urls
build	08-Dec-2024 00:06:06	(Found 4 errors + 2739 warnings) Compiling jalview/test/jalview/util
build	08-Dec-2024 00:06:06	(Found 4 errors + 2746 warnings) Compiling jalview/test/jalview/util
build	08-Dec-2024 00:06:06	(Found 4 errors + 2747 warnings) Compiling jalview/test/jalview/util
build	08-Dec-2024 00:06:06	(Found 4 errors + 2751 warnings) Compiling jalview/test/jalview/util
build	08-Dec-2024 00:06:06	(Found 4 errors + 2752 warnings) Compiling jalview/test/jalview/util
build	08-Dec-2024 00:06:06	(Found 4 errors + 2757 warnings) Compiling jalview/test/jalview/util
build	08-Dec-2024 00:06:06	(Found 4 errors + 2757 warnings) Compiling jalview/test/jalview/util/dialogrunner
build	08-Dec-2024 00:06:06	(Found 4 errors + 2757 warnings) Compiling jalview/test/jalview/util/imagemaker
build	08-Dec-2024 00:06:06	(Found 4 errors + 2757 warnings) Compiling jalview/test/jalview/util/matcher
build	08-Dec-2024 00:06:06	(Found 4 errors + 2760 warnings) Compiling jalview/test/jalview/util/matcher
build	08-Dec-2024 00:06:06	(Found 4 errors + 2760 warnings) Compiling jalview/test/jalview/viewmodel
build	08-Dec-2024 00:06:07	(Found 4 errors + 2761 warnings) Compiling jalview/test/jalview/viewmodel/styles
build	08-Dec-2024 00:06:07	(Found 4 errors + 2761 warnings) Compiling jalview/test/jalview/workers
build	08-Dec-2024 00:06:07	(Found 4 errors + 2761 warnings) Compiling jalview/test/jalview/ws
build	08-Dec-2024 00:06:07	(Found 4 errors + 2763 warnings) Compiling jalview/test/jalview/ws
build	08-Dec-2024 00:06:07	(Found 4 errors + 2766 warnings) Compiling jalview/test/jalview/ws/dbsources
build	08-Dec-2024 00:06:07	(Found 4 errors + 2767 warnings) Compiling jalview/test/jalview/ws/dbsources
build	08-Dec-2024 00:06:07	(Found 4 errors + 2767 warnings) Compiling jalview/test/jalview/ws/ebi
build	08-Dec-2024 00:06:07	(Found 4 errors + 2774 warnings) Compiling jalview/test/jalview/ws/gui
build	08-Dec-2024 00:06:07	(Found 4 errors + 2774 warnings) Compiling jalview/test/jalview/ws/jabaws
build	08-Dec-2024 00:06:07	(Found 4 errors + 2775 warnings) Compiling jalview/test/jalview/ws/jabaws
build	08-Dec-2024 00:06:07	(Found 4 errors + 2776 warnings) Compiling jalview/test/jalview/ws/jabaws
build	08-Dec-2024 00:06:07	(Found 4 errors + 2780 warnings) Compiling jalview/test/jalview/ws/jabaws
build	08-Dec-2024 00:06:07	(Found 4 errors + 2795 warnings) Compiling jalview/test/jalview/ws/jws2
build	08-Dec-2024 00:06:07	(Found 4 errors + 2795 warnings) Compiling jalview/test/jalview/ws/rest
build	08-Dec-2024 00:06:07	(Found 4 errors + 2796 warnings) Compiling jalview/test/jalview/ws/rest
build	08-Dec-2024 00:06:07	(Found 4 errors + 2796 warnings) Compiling jalview/test/jalview/ws/seqfetcher
build	08-Dec-2024 00:06:07	(Found 4 errors + 2797 warnings) Compiling jalview/test/jalview/ws/sifts
build	08-Dec-2024 00:06:07	(Found 4 errors + 2799 warnings) Compiling jalview/test/jalview/ws/utils
build	08-Dec-2024 00:06:07	(Found 4 errors + 2815 warnings) Compiling jalview/test/junit/extensions
build	08-Dec-2024 00:06:07	(Found 4 errors + 2817 warnings) Compiling jalview/test/junit/extensions
build	08-Dec-2024 00:06:07	(Found 4 errors + 2817 warnings) Compiling jalview/test/mc_view
build	08-Dec-2024 00:06:07	(Found 4 errors + 2818 warnings) Compiling jalview/test/mc_view
build	08-Dec-2024 00:06:07	J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/.j2s
build	08-Dec-2024 00:06:07	j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename
build	08-Dec-2024 00:06:07	J2S System.getProperty("org.jalview.jalviewjsj2sfilename") = ./build/jalviewjs/config/j2s
build	08-Dec-2024 00:06:07	J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/config/j2s
build	08-Dec-2024 00:06:07	j2s.compiler.status = enable
build	08-Dec-2024 00:06:07	j2s.compiler.java.version = 8
build	08-Dec-2024 00:06:07	J2S compiler version set to 8
build	08-Dec-2024 00:06:07	j2s.break.on.error = false
build	08-Dec-2024 00:06:07	j2s.exact.long = true
build	08-Dec-2024 00:06:07	j2s.async.thread = false
build	08-Dec-2024 00:06:07	j2s.compiler.mode = nodebug
build	08-Dec-2024 00:06:07	j2s.site.directory = ./build/jalviewjs/tmp/site_js
build	08-Dec-2024 00:06:07	J2S writing to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s
build	08-Dec-2024 00:06:07	j2s.log.methods.declared = <no log file>
build	08-Dec-2024 00:06:07	j2s.log.methods.called = <no log file>
build	08-Dec-2024 00:06:07	j2s.excluded.paths = test;testng;util
build	08-Dec-2024 00:06:07	j2s.compiler.read.annotations = true
build	08-Dec-2024 00:06:07	j2s.compiler.ignored.annotations = CallerSensitive;ConstructorProperties;Deprecated;Override;SafeVarargs;SuppressWarnings;FunctionalInterface;Documented;Inherited;Native;Repeatable;Retention;
build	08-Dec-2024 00:06:07	j2s.testing = false
build	08-Dec-2024 00:06:07	j2s.compiler.nonqualified.packages = <none>
build	08-Dec-2024 00:06:07	j2s.compiler.nonqualified.classes = <none>
build	08-Dec-2024 00:06:07	j2s.class.replacements = <none>
build	08-Dec-2024 00:06:07	j2s.template.html = utils/jalviewjs/template.html
build	08-Dec-2024 00:06:07	J2S using HTML template /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/utils/jalviewjs/template.html
build	08-Dec-2024 00:06:07	J2S building JavaScript jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 Sun Dec 08 00:06:07 GMT 2024
build	08-Dec-2024 00:06:07	J2S building JavaScript for 1103 files
build	08-Dec-2024 00:06:07	J2S transpiling (1/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/github/reinert/jjschema/Attributes.java
build	08-Dec-2024 00:06:07	j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/com
build	08-Dec-2024 00:06:07	J2S transpiling (2/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/AmpersandRule.java
build	08-Dec-2024 00:06:07	J2S transpiling (3/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Any.java
build	08-Dec-2024 00:06:07	J2S transpiling (4/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/BackG.java
build	08-Dec-2024 00:06:07	J2S transpiling (5/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/BackMatch.java
build	08-Dec-2024 00:06:07	J2S transpiling (6/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/BackRefRule.java
build	08-Dec-2024 00:06:07	J2S transpiling (7/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Backup.java
build	08-Dec-2024 00:06:07	J2S transpiling (8/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/BasicStringBufferLike.java
build	08-Dec-2024 00:06:07	J2S transpiling (9/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Bits.java
build	08-Dec-2024 00:06:08	J2S transpiling (10/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Boundary.java
build	08-Dec-2024 00:06:08	J2S transpiling (11/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Bracket.java
build	08-Dec-2024 00:06:08	J2S transpiling (12/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/CaseMgr.java
build	08-Dec-2024 00:06:08	J2S transpiling (13/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/ChangeRule.java
build	08-Dec-2024 00:06:08	J2S transpiling (14/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/CodeRule.java
build	08-Dec-2024 00:06:08	J2S transpiling (15/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Ctrl.java
build	08-Dec-2024 00:06:08	J2S transpiling (16/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Custom.java
build	08-Dec-2024 00:06:08	J2S transpiling (17/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/CustomEndpoint.java
build	08-Dec-2024 00:06:08	J2S transpiling (18/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/DirFileRegex.java
build	08-Dec-2024 00:06:08	J2S transpiling (19/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/DotMulti.java
build	08-Dec-2024 00:06:08	J2S transpiling (20/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/End.java
build	08-Dec-2024 00:06:08	J2S transpiling (21/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/FastBracket.java
build	08-Dec-2024 00:06:08	J2S transpiling (22/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/FastMulti.java
build	08-Dec-2024 00:06:08	J2S transpiling (23/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/FileRegex.java
build	08-Dec-2024 00:06:08	J2S transpiling (24/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Group.java
build	08-Dec-2024 00:06:08	J2S transpiling (25/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/LeftRule.java
build	08-Dec-2024 00:06:08	J2S transpiling (26/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Multi.java
build	08-Dec-2024 00:06:08	J2S transpiling (27/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/MultiMin.java
build	08-Dec-2024 00:06:08	J2S transpiling (28/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Multi_stage2.java
build	08-Dec-2024 00:06:08	J2S transpiling (29/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/NoPattern.java
build	08-Dec-2024 00:06:08	J2S transpiling (30/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/NonDirFileRegex.java
build	08-Dec-2024 00:06:08	J2S transpiling (31/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/NotImplementedError.java
build	08-Dec-2024 00:06:08	J2S transpiling (32/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/NullPattern.java
build	08-Dec-2024 00:06:08	J2S transpiling (33/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/NullRule.java
build	08-Dec-2024 00:06:08	J2S transpiling (34/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Or.java
build	08-Dec-2024 00:06:08	J2S transpiling (35/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/OrMark.java
build	08-Dec-2024 00:06:08	J2S transpiling (36/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/PartialBuffer.java
build	08-Dec-2024 00:06:08	J2S transpiling (37/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Pattern.java
build	08-Dec-2024 00:06:08	J2S transpiling (38/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/PatternSub.java
build	08-Dec-2024 00:06:08	J2S transpiling (39/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/PopRule.java
build	08-Dec-2024 00:06:08	J2S transpiling (40/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Prop.java
build	08-Dec-2024 00:06:08	J2S transpiling (41/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Pthings.java
build	08-Dec-2024 00:06:08	J2S transpiling (42/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/PushRule.java
build	08-Dec-2024 00:06:08	J2S transpiling (43/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RBuffer.java
build	08-Dec-2024 00:06:08	J2S transpiling (44/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Range.java
build	08-Dec-2024 00:06:08	J2S transpiling (45/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RegOpt.java
build	08-Dec-2024 00:06:08	J2S transpiling (46/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RegRes.java
build	08-Dec-2024 00:06:08	J2S transpiling (47/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RegSyntax.java
build	08-Dec-2024 00:06:08	J2S transpiling (48/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RegSyntaxError.java
build	08-Dec-2024 00:06:08	J2S transpiling (49/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Regex.java
build	08-Dec-2024 00:06:09	J2S transpiling (50/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RegexReader.java
build	08-Dec-2024 00:06:09	J2S transpiling (51/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RegexTokenizer.java
build	08-Dec-2024 00:06:09	J2S transpiling (52/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RegexWriter.java
build	08-Dec-2024 00:06:09	>>>main found for com.stevesoft.pat.RegexWriter
build	08-Dec-2024 00:06:09	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/com_stevesoft_pat_RegexWriter.html
build	08-Dec-2024 00:06:09	J2S transpiling (53/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/ReplaceRule.java
build	08-Dec-2024 00:06:09	J2S transpiling (54/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Replacer.java
build	08-Dec-2024 00:06:09	J2S transpiling (55/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RightRule.java
build	08-Dec-2024 00:06:09	J2S transpiling (56/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Rthings.java
build	08-Dec-2024 00:06:09	J2S transpiling (57/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/RuleHolder.java
build	08-Dec-2024 00:06:09	J2S transpiling (58/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Skip.java
build	08-Dec-2024 00:06:09	J2S transpiling (59/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Skip2.java
build	08-Dec-2024 00:06:09	J2S transpiling (60/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/SkipBMH.java
build	08-Dec-2024 00:06:09	J2S transpiling (61/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Skipped.java
build	08-Dec-2024 00:06:09	J2S transpiling (62/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/SpecialRule.java
build	08-Dec-2024 00:06:09	J2S transpiling (63/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Start.java
build	08-Dec-2024 00:06:09	J2S transpiling (64/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/StrPos.java
build	08-Dec-2024 00:06:09	J2S transpiling (65/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/StringBufferLike.java
build	08-Dec-2024 00:06:09	J2S transpiling (66/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/StringLike.java
build	08-Dec-2024 00:06:09	J2S transpiling (67/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/StringRule.java
build	08-Dec-2024 00:06:09	J2S transpiling (68/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/SubMark.java
build	08-Dec-2024 00:06:09	J2S transpiling (69/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/TransPat.java
build	08-Dec-2024 00:06:09	J2S transpiling (70/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Transformer.java
build	08-Dec-2024 00:06:09	J2S transpiling (71/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/UniValidator.java
build	08-Dec-2024 00:06:09	J2S transpiling (72/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/Validator.java
build	08-Dec-2024 00:06:09	J2S transpiling (73/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/com/stevesoft/pat/WantMoreTextReplaceRule.java
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build	08-Dec-2024 00:06:12	J2S transpiling (180/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/SequenceStructureBinding.java
build	08-Dec-2024 00:06:12	J2S transpiling (181/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/SiftsClientI.java
build	08-Dec-2024 00:06:13	J2S transpiling (182/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/SplitContainerI.java
build	08-Dec-2024 00:06:13	J2S transpiling (183/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/StructureSelectionManagerProvider.java
build	08-Dec-2024 00:06:13	J2S transpiling (184/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/ViewStyleI.java
build	08-Dec-2024 00:06:13	J2S transpiling (185/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/analysis/PairwiseScoreModelI.java
build	08-Dec-2024 00:06:13	J2S transpiling (186/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/analysis/ScoreModelI.java
build	08-Dec-2024 00:06:13	J2S transpiling (187/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/analysis/SimilarityParamsI.java
build	08-Dec-2024 00:06:13	J2S transpiling (188/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/api/structures/JalviewStructureDisplayI.java
build	08-Dec-2024 00:06:13	J2S transpiling (189/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/APopupMenu.java
build	08-Dec-2024 00:06:13	J2S transpiling (190/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AlignFrame.java
build	08-Dec-2024 00:06:14	J2S transpiling (191/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AlignViewport.java
build	08-Dec-2024 00:06:14	J2S transpiling (192/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AlignmentPanel.java
build	08-Dec-2024 00:06:14	J2S transpiling (193/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AnnotationColourChooser.java
build	08-Dec-2024 00:06:14	J2S transpiling (194/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AnnotationColumnChooser.java
build	08-Dec-2024 00:06:14	J2S transpiling (195/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AnnotationLabels.java
build	08-Dec-2024 00:06:14	J2S transpiling (196/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AnnotationPanel.java
build	08-Dec-2024 00:06:14	J2S transpiling (197/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AnnotationRowFilter.java
build	08-Dec-2024 00:06:14	J2S transpiling (198/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AppletJmol.java
build	08-Dec-2024 00:06:14	J2S transpiling (199/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/AppletJmolBinding.java
build	08-Dec-2024 00:06:14	J2S transpiling (200/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/CutAndPasteTransfer.java
build	08-Dec-2024 00:06:14	J2S transpiling (201/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/EditNameDialog.java
build	08-Dec-2024 00:06:14	J2S transpiling (202/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/EmbmenuFrame.java
build	08-Dec-2024 00:06:14	J2S transpiling (203/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/ExtJmol.java
build	08-Dec-2024 00:06:15	J2S transpiling (204/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/FeatureColourChooser.java
build	08-Dec-2024 00:06:15	J2S transpiling (205/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/FeatureRenderer.java
build	08-Dec-2024 00:06:15	J2S transpiling (206/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/FeatureSettings.java
build	08-Dec-2024 00:06:15	J2S transpiling (207/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/Finder.java
build	08-Dec-2024 00:06:15	J2S transpiling (208/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/FontChooser.java
build	08-Dec-2024 00:06:15	J2S transpiling (209/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/IdCanvas.java
build	08-Dec-2024 00:06:15	J2S transpiling (210/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/IdPanel.java
build	08-Dec-2024 00:06:15	J2S transpiling (211/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/IdwidthAdjuster.java
build	08-Dec-2024 00:06:15	J2S transpiling (212/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/JVDialog.java
build	08-Dec-2024 00:06:15	J2S transpiling (213/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/OverviewCanvas.java
build	08-Dec-2024 00:06:15	>>class jalview.appletgui.OverviewCanvas extended java.awt.Component now extends java.awt.Label
build	08-Dec-2024 00:06:15	J2S transpiling (214/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/OverviewPanel.java
build	08-Dec-2024 00:06:15	J2S transpiling (215/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/PCAPanel.java
build	08-Dec-2024 00:06:15	J2S transpiling (216/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/PaintRefresher.java
build	08-Dec-2024 00:06:15	J2S transpiling (217/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/PairwiseAlignPanel.java
build	08-Dec-2024 00:06:15	J2S transpiling (218/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/RedundancyPanel.java
build	08-Dec-2024 00:06:15	J2S transpiling (219/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/RotatableCanvas.java
build	08-Dec-2024 00:06:15	J2S transpiling (220/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/ScalePanel.java
build	08-Dec-2024 00:06:15	J2S transpiling (221/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/SeqCanvas.java
build	08-Dec-2024 00:06:16	J2S transpiling (222/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/SeqPanel.java
build	08-Dec-2024 00:06:16	J2S transpiling (223/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/SequenceRenderer.java
build	08-Dec-2024 00:06:16	J2S transpiling (224/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/SliderPanel.java
build	08-Dec-2024 00:06:16	J2S transpiling (225/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/SplitFrame.java
build	08-Dec-2024 00:06:16	J2S transpiling (226/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/TitledPanel.java
build	08-Dec-2024 00:06:16	J2S transpiling (227/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/Tooltip.java
build	08-Dec-2024 00:06:16	J2S transpiling (228/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/TreeCanvas.java
build	08-Dec-2024 00:06:16	J2S transpiling (229/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/TreePanel.java
build	08-Dec-2024 00:06:16	J2S transpiling (230/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/appletgui/UserDefinedColours.java
build	08-Dec-2024 00:06:16	J2S transpiling (231/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/ArgsParser.java
build	08-Dec-2024 00:06:16	J2S transpiling (232/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/BuildDetails.java
build	08-Dec-2024 00:06:16	J2S transpiling (233/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/Cache.java
build	08-Dec-2024 00:06:16	J2S transpiling (234/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/Commands.java
build	08-Dec-2024 00:06:16	J2S transpiling (235/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/Console.java
build	08-Dec-2024 00:06:17	J2S transpiling (236/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/GetMemory.java
build	08-Dec-2024 00:06:17	J2S transpiling (237/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/GetdownLauncherUpdate.java
build	08-Dec-2024 00:06:17	>>>main found for jalview.bin.GetdownLauncherUpdate
build	08-Dec-2024 00:06:17	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_GetdownLauncherUpdate.html
build	08-Dec-2024 00:06:17	J2S transpiling (238/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/HiDPISetting.java
build	08-Dec-2024 00:06:17	J2S transpiling (239/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/Jalview.java
build	08-Dec-2024 00:06:17	>>>main found for jalview.bin.Jalview
build	08-Dec-2024 00:06:17	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_Jalview.html
build	08-Dec-2024 00:06:17	J2S transpiling (240/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/JalviewJS2.java
build	08-Dec-2024 00:06:17	>>>main found for jalview.bin.JalviewJS2
build	08-Dec-2024 00:06:17	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewJS2.html
build	08-Dec-2024 00:06:17	J2S transpiling (241/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/JalviewLite.java
build	08-Dec-2024 00:06:17	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewLite_applet.html
build	08-Dec-2024 00:06:17	J2S transpiling (242/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/JalviewLiteURLRetrieve.java
build	08-Dec-2024 00:06:17	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewLiteURLRetrieve_applet.html
build	08-Dec-2024 00:06:17	J2S transpiling (243/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/JalviewTaskbar.java
build	08-Dec-2024 00:06:17	J2S transpiling (244/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/Launcher.java
build	08-Dec-2024 00:06:17	>>>main found for jalview.bin.Launcher
build	08-Dec-2024 00:06:17	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_Launcher.html
build	08-Dec-2024 00:06:17	J2S transpiling (245/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/MemorySetting.java
build	08-Dec-2024 00:06:17	J2S transpiling (246/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/ScreenInfo.java
build	08-Dec-2024 00:06:17	J2S transpiling (247/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/argparser/Arg.java
build	08-Dec-2024 00:06:17	J2S transpiling (248/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/argparser/ArgParser.java
build	08-Dec-2024 00:06:17	J2S transpiling (249/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/argparser/ArgValue.java
build	08-Dec-2024 00:06:17	J2S transpiling (250/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/argparser/ArgValues.java
build	08-Dec-2024 00:06:17	J2S transpiling (251/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/argparser/ArgValuesMap.java
build	08-Dec-2024 00:06:17	J2S transpiling (252/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/argparser/BootstrapArgs.java
build	08-Dec-2024 00:06:17	J2S transpiling (253/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/argparser/SubVals.java
build	08-Dec-2024 00:06:17	J2S transpiling (254/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/groovy/JalviewObject.java
build	08-Dec-2024 00:06:17	J2S transpiling (255/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/bin/groovy/JalviewObjectI.java
build	08-Dec-2024 00:06:17	J2S transpiling (256/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/ChangeCaseCommand.java
build	08-Dec-2024 00:06:17	J2S transpiling (257/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/CommandI.java
build	08-Dec-2024 00:06:17	J2S transpiling (258/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/EditCommand.java
build	08-Dec-2024 00:06:18	J2S transpiling (259/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/JustifyLeftOrRightCommand.java
build	08-Dec-2024 00:06:18	J2S transpiling (260/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/OrderCommand.java
build	08-Dec-2024 00:06:18	J2S transpiling (261/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/RemoveGapColCommand.java
build	08-Dec-2024 00:06:18	J2S transpiling (262/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/RemoveGapsCommand.java
build	08-Dec-2024 00:06:18	J2S transpiling (263/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/SlideSequencesCommand.java
build	08-Dec-2024 00:06:18	J2S transpiling (264/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/commands/TrimRegionCommand.java
build	08-Dec-2024 00:06:18	J2S transpiling (265/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/controller/AlignViewController.java
build	08-Dec-2024 00:06:18	J2S transpiling (266/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/controller/FeatureSettingsController.java
build	08-Dec-2024 00:06:18	J2S transpiling (267/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/controller/FeatureSettingsControllerGuiI.java
build	08-Dec-2024 00:06:18	J2S transpiling (268/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/ASequence.java
build	08-Dec-2024 00:06:18	J2S transpiling (269/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/ASequenceI.java
build	08-Dec-2024 00:06:18	J2S transpiling (270/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/AlignExportSettingsAdapter.java
build	08-Dec-2024 00:06:18	J2S transpiling (271/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/AlignedCodon.java
build	08-Dec-2024 00:06:18	J2S transpiling (272/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/AlignedCodonFrame.java
build	08-Dec-2024 00:06:18	J2S transpiling (273/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/Alignment.java
build	08-Dec-2024 00:06:18	J2S transpiling (274/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/AlignmentAnnotation.java
build	08-Dec-2024 00:06:18	J2S transpiling (275/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/AlignmentExportData.java
build	08-Dec-2024 00:06:18	J2S transpiling (276/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/AlignmentI.java
build	08-Dec-2024 00:06:18	J2S transpiling (277/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/src/jalview/datamodel/AlignmentOrder.java
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build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/PDBSequenceFetcherTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/SequenceFetcherTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/EmblXmlSourceTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/PfamFullTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/PfamSeedTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/RemoteFormatTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/RfamFullTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/RfamSeedTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/UniprotTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/dbsources/XfamFetcherTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/ebi/EBIFetchClientTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/gui/Jws2ParamView.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/jabaws/MinJabawsClientTests.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/jabaws/RNAStructExportImport.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/jws2/ParameterUtilsTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/rest/RestClientTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/rest/ShmmrRSBSService.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/sifts/SiftsClientTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/jalview/ws/utils/UrlDownloadClientTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/junit/extensions/PA.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/junit/extensions/PrivilegedAccessor.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/mc_view/AtomTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/mc_view/BondTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/mc_view/PDBChainTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/mc_view/PDBfileTest.java
build	08-Dec-2024 00:06:39	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/test/mc_view/ResidueTest.java
build	08-Dec-2024 00:06:39	J2S processed 1103 .java files, created 1134 .js files and 7 .html files, copied 6 resources
build	08-Dec-2024 00:06:39	J2S buildFinished 1103 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1
build	08-Dec-2024 00:06:39	J2S buildFinished nerror = 0 Sun Dec 08 00:06:39 GMT 2024
build	08-Dec-2024 00:06:39	(Found 4 errors + 2818 warnings) Build done
build	08-Dec-2024 00:06:39	Invoking 'Gradle Project Builder' on '/jalview'.
build	08-Dec-2024 00:06:40	:jalviewjsTranspile (Thread[Execution worker for ':',5,main]) completed. Took 51.981 secs.
build	08-Dec-2024 00:06:40	:jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:40	
build	08-Dec-2024 00:06:40	> Task :jalviewjsCopyTransferSiteJs
build	08-Dec-2024 00:06:40	Caching disabled for task ':jalviewjsCopyTransferSiteJs' because:
build	08-Dec-2024 00:06:40	  Build cache is disabled
build	08-Dec-2024 00:06:40	Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because:
build	08-Dec-2024 00:06:40	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site has been removed.
build	08-Dec-2024 00:06:40	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed.
build	08-Dec-2024 00:06:40	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_GetdownLauncherUpdate.html has been removed.
build	08-Dec-2024 00:06:40	:jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) completed. Took 0.296 secs.
build	08-Dec-2024 00:06:40	:jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:41	
build	08-Dec-2024 00:06:41	> Task :jalviewjsTransferUnzipLib
build	08-Dec-2024 00:06:41	Caching disabled for task ':jalviewjsTransferUnzipLib' because:
build	08-Dec-2024 00:06:41	  Build cache is disabled
build	08-Dec-2024 00:06:41	Task ':jalviewjsTransferUnzipLib' is not up-to-date because:
build	08-Dec-2024 00:06:41	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_lib has been removed.
build	08-Dec-2024 00:06:41	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_AlignmentDemo.html has been removed.
build	08-Dec-2024 00:06:41	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_fragseq_FragSeqGUI.html has been removed.
build	08-Dec-2024 00:06:41	:jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) completed. Took 0.656 secs.
build	08-Dec-2024 00:06:41	:jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:42	
build	08-Dec-2024 00:06:42	> Task :jalviewjsTransferUnzipSwingJs
build	08-Dec-2024 00:06:42	Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because:
build	08-Dec-2024 00:06:42	  Build cache is disabled
build	08-Dec-2024 00:06:42	Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because:
build	08-Dec-2024 00:06:42	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_swingjs has been removed.
build	08-Dec-2024 00:06:42	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_swingjs/___j2sflags.htm has been removed.
build	08-Dec-2024 00:06:42	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_swingjs/debug.log has been removed.
build	08-Dec-2024 00:06:42	:jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) completed. Took 1.256 secs.
build	08-Dec-2024 00:06:42	:jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:42	
build	08-Dec-2024 00:06:42	> Task :jalviewjsTransferUnzipAllLibs
build	08-Dec-2024 00:06:42	Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions.
build	08-Dec-2024 00:06:42	:jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:06:42	:jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:44	
build	08-Dec-2024 00:06:44	> Task :jalviewjsSyncAllLibs
build	08-Dec-2024 00:06:44	Caching disabled for task ':jalviewjsSyncAllLibs' because:
build	08-Dec-2024 00:06:44	  Build cache is disabled
build	08-Dec-2024 00:06:44	Task ':jalviewjsSyncAllLibs' is not up-to-date because:
build	08-Dec-2024 00:06:44	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CDL.js has changed.
build	08-Dec-2024 00:06:44	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/Cookie.js has changed.
build	08-Dec-2024 00:06:44	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CookieList.js has changed.
build	08-Dec-2024 00:06:44	:jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 1.324 secs.
build	08-Dec-2024 00:06:44	:copyResources (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:44	
build	08-Dec-2024 00:06:44	> Task :copyResources UP-TO-DATE
build	08-Dec-2024 00:06:44	Caching disabled for task ':copyResources' because:
build	08-Dec-2024 00:06:44	  Build cache is disabled
build	08-Dec-2024 00:06:44	Skipping task ':copyResources' as it is up-to-date.
build	08-Dec-2024 00:06:44	:copyResources (Thread[Execution worker for ':',5,main]) completed. Took 0.003 secs.
build	08-Dec-2024 00:06:44	:createBuildProperties (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:44	
build	08-Dec-2024 00:06:44	> Task :createBuildProperties
build	08-Dec-2024 00:06:44	Caching disabled for task ':createBuildProperties' because:
build	08-Dec-2024 00:06:44	  Build cache is disabled
build	08-Dec-2024 00:06:44	Task ':createBuildProperties' is not up-to-date because:
build	08-Dec-2024 00:06:44	  Value of input property 'comment' has changed for task ':createBuildProperties'
build	08-Dec-2024 00:06:44	  Value of input property 'properties' has changed for task ':createBuildProperties'
build	08-Dec-2024 00:06:44	:createBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.006 secs.
build	08-Dec-2024 00:06:44	:jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:44	
build	08-Dec-2024 00:06:44	> Task :jalviewjsSyncBuildProperties
build	08-Dec-2024 00:06:44	Caching disabled for task ':jalviewjsSyncBuildProperties' because:
build	08-Dec-2024 00:06:44	  Build cache is disabled
build	08-Dec-2024 00:06:44	Task ':jalviewjsSyncBuildProperties' is not up-to-date because:
build	08-Dec-2024 00:06:44	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed.
build	08-Dec-2024 00:06:44	:jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.123 secs.
build	08-Dec-2024 00:06:44	:jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:06:46	
build	08-Dec-2024 00:06:46	> Task :jalviewjsBuildAllCores
build	08-Dec-2024 00:06:46	Execution optimizations have been disabled for task ':jalviewjsBuildAllCores' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:06:46	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_lib/swingjs/j2s'. Reason: Task ':jalviewjsBuildAllCores' uses this output of task ':jalviewjsTransferUnzipLib' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:06:46	Invalidating VFS because task ':jalviewjsBuildAllCores' failed validation
build	08-Dec-2024 00:06:46	Caching disabled for task ':jalviewjsBuildAllCores' because:
build	08-Dec-2024 00:06:46	  Build cache is disabled
build	08-Dec-2024 00:06:46	Task ':jalviewjsBuildAllCores' is not up-to-date because:
build	08-Dec-2024 00:06:46	  Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build	08-Dec-2024 00:06:46	Creating core for jalview...
build	08-Dec-2024 00:06:46	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js
build	08-Dec-2024 00:06:46	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js
build	08-Dec-2024 00:06:46	
build	08-Dec-2024 00:06:46	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js'
build	08-Dec-2024 00:06:46	
build	08-Dec-2024 00:06:46	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js
build	08-Dec-2024 00:06:46	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	08-Dec-2024 00:06:54	--
build	08-Dec-2024 00:06:54	Creating core for jvexamplefile...
build	08-Dec-2024 00:06:54	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js
build	08-Dec-2024 00:06:54	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js
build	08-Dec-2024 00:06:54	
build	08-Dec-2024 00:06:54	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js'
build	08-Dec-2024 00:06:54	
build	08-Dec-2024 00:06:54	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js
build	08-Dec-2024 00:06:54	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	08-Dec-2024 00:06:56	--
build	08-Dec-2024 00:06:56	Creating core for _jalview...
build	08-Dec-2024 00:06:56	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js
build	08-Dec-2024 00:06:56	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js
build	08-Dec-2024 00:06:56	
build	08-Dec-2024 00:06:56	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js'
build	08-Dec-2024 00:06:56	
build	08-Dec-2024 00:06:56	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js
build	08-Dec-2024 00:06:56	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	08-Dec-2024 00:06:57	--
build	08-Dec-2024 00:06:57	Creating core for _stevesoft...
build	08-Dec-2024 00:06:57	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js
build	08-Dec-2024 00:06:57	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js
build	08-Dec-2024 00:06:57	
build	08-Dec-2024 00:06:57	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js'
build	08-Dec-2024 00:06:57	
build	08-Dec-2024 00:06:57	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js
build	08-Dec-2024 00:06:57	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	08-Dec-2024 00:07:00	--
build	08-Dec-2024 00:07:00	:jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) completed. Took 16.486 secs.
build	08-Dec-2024 00:07:00	:jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:00	
build	08-Dec-2024 00:07:00	> Task :jalviewjsPublishCoreTemplates
build	08-Dec-2024 00:07:00	Caching disabled for task ':jalviewjsPublishCoreTemplates' because:
build	08-Dec-2024 00:07:00	  Build cache is disabled
build	08-Dec-2024 00:07:00	Task ':jalviewjsPublishCoreTemplates' is not up-to-date because:
build	08-Dec-2024 00:07:00	  Output property '$1$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jalview.html has been removed.
build	08-Dec-2024 00:07:00	  Output property '$1$2' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jvexamplefile.html has been removed.
build	08-Dec-2024 00:07:00	  Output property '$1$3' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/tmp/site_core/JalviewJS__jalview.html has been removed.
build	08-Dec-2024 00:07:00	:jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) completed. Took 0.03 secs.
build	08-Dec-2024 00:07:00	:jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:01	
build	08-Dec-2024 00:07:01	> Task :jalviewjsSyncCore
build	08-Dec-2024 00:07:01	Caching disabled for task ':jalviewjsSyncCore' because:
build	08-Dec-2024 00:07:01	  Build cache is disabled
build	08-Dec-2024 00:07:01	Task ':jalviewjsSyncCore' is not up-to-date because:
build	08-Dec-2024 00:07:01	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/JalviewJS__jalview.html has been removed.
build	08-Dec-2024 00:07:01	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/JalviewJS__stevesoft.html has been removed.
build	08-Dec-2024 00:07:01	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/JalviewJS_jalview.html has been removed.
build	08-Dec-2024 00:07:01	:jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) completed. Took 0.196 secs.
build	08-Dec-2024 00:07:01	:copyChannelResources (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:01	
build	08-Dec-2024 00:07:01	> Task :copyChannelResources
build	08-Dec-2024 00:07:01	Execution optimizations have been disabled for task ':copyChannelResources' to ensure correctness due to the following reasons:
build	08-Dec-2024 00:07:01	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:07:01	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/resources/resources_build'. Reason: Task ':jalviewjsSyncBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	08-Dec-2024 00:07:01	Invalidating VFS because task ':copyChannelResources' failed validation
build	08-Dec-2024 00:07:01	Caching disabled for task ':copyChannelResources' because:
build	08-Dec-2024 00:07:01	  Build cache is disabled
build	08-Dec-2024 00:07:01	Task ':copyChannelResources' is not up-to-date because:
build	08-Dec-2024 00:07:01	  Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build	08-Dec-2024 00:07:01	:copyChannelResources (Thread[Execution worker for ':',5,main]) completed. Took 0.01 secs.
build	08-Dec-2024 00:07:01	:buildResources (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:01	
build	08-Dec-2024 00:07:01	> Task :buildResources
build	08-Dec-2024 00:07:01	Skipping task ':buildResources' as it has no actions.
build	08-Dec-2024 00:07:01	:buildResources (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:07:01	:jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:01	
build	08-Dec-2024 00:07:01	> Task :jalviewjsSyncResources
build	08-Dec-2024 00:07:01	Caching disabled for task ':jalviewjsSyncResources' because:
build	08-Dec-2024 00:07:01	  Build cache is disabled
build	08-Dec-2024 00:07:01	Task ':jalviewjsSyncResources' is not up-to-date because:
build	08-Dec-2024 00:07:01	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has changed.
build	08-Dec-2024 00:07:01	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/j2s/AmbiguityCodes.dat has been removed.
build	08-Dec-2024 00:07:01	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/j2s/authors.props has been removed.
build	08-Dec-2024 00:07:01	:jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) completed. Took 0.177 secs.
build	08-Dec-2024 00:07:01	:jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:02	
build	08-Dec-2024 00:07:02	> Task :jalviewjsSyncSiteResources
build	08-Dec-2024 00:07:02	Caching disabled for task ':jalviewjsSyncSiteResources' because:
build	08-Dec-2024 00:07:02	  Build cache is disabled
build	08-Dec-2024 00:07:02	Task ':jalviewjsSyncSiteResources' is not up-to-date because:
build	08-Dec-2024 00:07:02	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_JalviewJS2.html has changed.
build	08-Dec-2024 00:07:02	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/applets-nocore.html has been removed.
build	08-Dec-2024 00:07:02	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/applets.html has been removed.
build	08-Dec-2024 00:07:02	:jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) completed. Took 1.11 secs.
build	08-Dec-2024 00:07:02	:jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:02	
build	08-Dec-2024 00:07:02	> Task :jalviewjsPrepareSite
build	08-Dec-2024 00:07:02	Skipping task ':jalviewjsPrepareSite' as it has no actions.
build	08-Dec-2024 00:07:02	:jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:07:02	:jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:02	
build	08-Dec-2024 00:07:02	> Task :jalviewjsBuildSite
build	08-Dec-2024 00:07:02	Skipping task ':jalviewjsBuildSite' as it has no actions.
build	08-Dec-2024 00:07:02	:jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:07:02	:cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:02	
build	08-Dec-2024 00:07:02	> Task :cleanJalviewjsChromiumUserDir UP-TO-DATE
build	08-Dec-2024 00:07:02	Caching disabled for task ':cleanJalviewjsChromiumUserDir' because:
build	08-Dec-2024 00:07:02	  Build cache is disabled
build	08-Dec-2024 00:07:02	Skipping task ':cleanJalviewjsChromiumUserDir' as it is up-to-date.
build	08-Dec-2024 00:07:02	:cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build	08-Dec-2024 00:07:02	:jalviewjsChromiumProfile (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:02	
build	08-Dec-2024 00:07:02	> Task :jalviewjsChromiumProfile
build	08-Dec-2024 00:07:02	Caching disabled for task ':jalviewjsChromiumProfile' because:
build	08-Dec-2024 00:07:02	  Build cache is disabled
build	08-Dec-2024 00:07:02	Task ':jalviewjsChromiumProfile' is not up-to-date because:
build	08-Dec-2024 00:07:02	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/chromium/First Run has been removed.
build	08-Dec-2024 00:07:02	:jalviewjsChromiumProfile (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs.
build	08-Dec-2024 00:07:02	:jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:02	
build	08-Dec-2024 00:07:02	> Task :jalviewjsCopyStderrLaunchFile
build	08-Dec-2024 00:07:02	Caching disabled for task ':jalviewjsCopyStderrLaunchFile' because:
build	08-Dec-2024 00:07:02	  Build cache is disabled
build	08-Dec-2024 00:07:02	Task ':jalviewjsCopyStderrLaunchFile' is not up-to-date because:
build	08-Dec-2024 00:07:02	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed.
build	08-Dec-2024 00:07:02	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed.
build	08-Dec-2024 00:07:02	:jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':',5,main]) completed. Took 0.115 secs.
build	08-Dec-2024 00:07:02	:jalviewjsLaunchTest (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:02	COMMAND: '/home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html'
build	08-Dec-2024 00:07:02	Starting process 'command '/home/bamboo/buildtools/chromium/chrome''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1 Command: /home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html
build	08-Dec-2024 00:07:02	Successfully started process 'command '/home/bamboo/buildtools/chromium/chrome''
error	08-Dec-2024 00:07:03	[11464:11464:1208/000703.437175:WARNING:chrome_main_delegate.cc(593)] This is Thorium version: 114.0.5735.134 (not a warning)
error	08-Dec-2024 00:07:03	[11464:11464:1208/000703.889424:WARNING:chrome_browser_cloud_management_controller.cc(87)] Could not create policy manager as CBCM is not enabled.
build	08-Dec-2024 00:07:04	
build	08-Dec-2024 00:07:04	> Task :jalviewjsLaunchTest
build	08-Dec-2024 00:07:04	Caching disabled for task ':jalviewjsLaunchTest' because:
build	08-Dec-2024 00:07:04	  Build cache is disabled
build	08-Dec-2024 00:07:04	Task ':jalviewjsLaunchTest' is not up-to-date because:
build	08-Dec-2024 00:07:04	  Task has not declared any outputs despite executing actions.
error	08-Dec-2024 00:07:04	[11464:11479:1208/000704.686346:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	08-Dec-2024 00:07:04	[11464:11479:1208/000704.692608:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
build	08-Dec-2024 00:07:04	
error	08-Dec-2024 00:07:04	[11464:11479:1208/000704.692633:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	08-Dec-2024 00:07:04	[11464:11479:1208/000704.692647:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	08-Dec-2024 00:07:04	[11464:11464:1208/000704.809025:ERROR:chrome_browser_cloud_management_controller.cc(162)] Cloud management controller initialization aborted as CBCM is not enabled.
error	08-Dec-2024 00:07:05	[11464:11479:1208/000705.024348:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	08-Dec-2024 00:07:05	[11464:11479:1208/000705.024400:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	08-Dec-2024 00:07:05	[11491:11491:1208/000705.236702:ERROR:vaapi_wrapper.cc(3273)] Failed to initialize VAAPI libs
error	08-Dec-2024 00:07:05	[11491:11491:1208/000705.244741:WARNING:sandbox_linux.cc(393)] InitializeSandbox() called with multiple threads in process gpu-process.
error	08-Dec-2024 00:07:05	[11464:11476:1208/000705.306815:WARNING:external_pref_loader.cc(294)] You are using an old-style extension deployment method (external_extensions.json), which will soon be deprecated. (see http://developer.chrome.com/extensions/external_extensions.html)
error	08-Dec-2024 00:07:05	[11493:11522:1208/000705.423779:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration
error	08-Dec-2024 00:07:05	[11464:11464:1208/000705.952982:WARNING:bluez_dbus_manager.cc(247)] Floss manager not present, cannot set Floss enable/disable.
error	08-Dec-2024 00:07:05	[11464:11464:1208/000705.953109:ERROR:object_proxy.cc(590)] Failed to call method: org.freedesktop.portal.Settings.Read: object_path= /org/freedesktop/portal/desktop: unknown error type: 
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.513369:INFO:CONSOLE(13141)] "J2SApplet load testApplet loadClazz...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.513403:INFO:CONSOLE(13141)] "J2SApplet load testApplet start applet...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.566315:INFO:CONSOLE(13084)] "j2sApplet exec testApplet loadClazz null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.603344:INFO:CONSOLE(16968)] "j2sApplet exec testApplet start applet null
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.603369:INFO:CONSOLE(13084)] "j2sApplet exec testApplet start applet null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.603613:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Class.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.612674:INFO:CONSOLE(26)] "transpiler was unknown now 3.3.1-v1 for java.lang.Class
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.612696:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Jalview.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.616185:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/groovy/JalviewObjectI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.618547:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/Platform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.620724:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Console.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.623403:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.jalview.org
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.623421:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.jalview.org
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.623435:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.compbio.dundee.ac.uk
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.623445:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.compbio.dundee.ac.uk
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.626254:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Hashtable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.638947:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Dictionary.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.642329:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Map.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.649752:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.655920:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.663738:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.668185:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFrameViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.670737:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSApp.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.672408:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSInterface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.675107:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletStub.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.675823:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.677703:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URL.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.680038:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/Interface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.684452:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory
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error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.684689:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.690471:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.696640:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.698493:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractCollection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.701021:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.703585:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Iterable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.707000:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Set.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.709976:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Enumeration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.711746:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Iterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.714976:INFO:CONSOLE(16968)] "JSApp get parameter: language = null
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error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.715002:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSUtil.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.718337:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/JSUtilI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.721818:INFO:CONSOLE(16968)] "swingjs.JSUtil initialized;debug=false
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error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.721847:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Locale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.725573:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/BaseLocale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.728941:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/StringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.732606:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AbstractStringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.736690:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LocaleUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.739905:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Enum.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.745028:INFO:CONSOLE(16968)] "JSApp get parameter: name = testApplet
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error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.745059:INFO:CONSOLE(16968)] "JSApp get parameter: syncId = 880989937293772
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error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.745071:INFO:CONSOLE(16968)] "JSApp initialized
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error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.745082:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Dimension.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.752661:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Dimension2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.754680:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Lst.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.758783:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ArrayList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.763314:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.766800:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/List.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.771373:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/RandomAccess.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.774357:INFO:CONSOLE(16968)] "JSAppletViewer initializing2
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error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.776346:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Insets.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.777781:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.780422:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.783179:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Thread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.786441:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/JSThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.789295:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.791754:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.795018:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Toolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.797828:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/ComponentFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.800120:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.802943:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.805417:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.808359:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PostEventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.815866:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.819579:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.825361:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/ChangeListenerMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.828423:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.829922:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.832181:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentThreadAppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.834351:INFO:CONSOLE(16968)] "JSToolkit initialized
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error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.834371:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.837211:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.840971:INFO:CONSOLE(16968)] "JSGraphicsConfiguration initialized
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.841063:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.842707:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.842898:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.845680:INFO:CONSOLE(16968)] "JSGraphicsEnvironment initialized
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.845769:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSScreenDevice
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.845940:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSScreenDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.849202:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.852034:INFO:CONSOLE(16968)] "JSScreenDevice initialized
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.857693:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=0 status=0
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.857725:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingUtilities.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.861195:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.863409:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentKeyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.866176:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InvocationEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.868918:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.875019:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.877093:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ActiveEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.878889:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AWTAutoShutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.881427:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.884772:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/IdentityHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.887873:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventDispatchThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.890877:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.894300:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventFilter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.896883:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Arrays.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.901852:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.909074:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=1
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.909099:INFO:CONSOLE(16968)] "JSAppletViewer runloader
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.909110:INFO:CONSOLE(16968)] "JSApp get parameter: main = jalview.bin.Jalview
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.909122:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSDummyApplet
error	08-Dec-2024 00:07:06	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.909131:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSDummyApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.915381:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.918122:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/JSApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.920321:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.922959:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Container.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.928410:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.932481:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Component.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.938089:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageObserver.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.941059:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RootPaneContainer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.944548:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FlowLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.946912:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.951871:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ComponentOrientation.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.956676:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JRootPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.959001:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:06	[11464:11464:1208/000706.966774:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/RequestFocusController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.975664:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/EventListenerList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.978782:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.982264:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.985508:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.985535:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/HTML5LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.987964:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.991419:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/FontUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.995230:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Font.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000706.997557:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/UIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.003617:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIDefaults.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.007842:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Color.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.010659:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Paint.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.013967:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Transparency.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.016254:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ColorUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.019792:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/SwingLazyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.024884:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/InsetsUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.027080:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/BorderUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.067357:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/peer/DropTargetPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.074746:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.076844:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.079613:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.082009:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventPostProcessor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.084352:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTKeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.089319:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.091754:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSequentialList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.094693:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Deque.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.096346:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.099106:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultKeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.101876:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.105491:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.109111:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.111224:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collections.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.119161:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFocusPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.122892:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/KeyboardFocusManagerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.125518:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/DOMNode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.127729:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Cursor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.132086:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JLayeredPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.134366:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLayeredPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.136993:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/BorderLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.139002:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager2.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.147517:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SortingFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.178182:INFO:CONSOLE(16968)] "testApplet loaded
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error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.190773:INFO:CONSOLE(16968)] "Running main(args) in class jalview.bin.Jalview
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error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.444950:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/datamodel/PDBEntry.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.450755:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureImportSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.453660:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.457962:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/Format.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.460540:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.463183:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleServiceProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.465608:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.468432:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/JRELocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.470846:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/ResourceBundleBasedAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.472712:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.478187:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.481196:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/SPILocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.484413:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AuxLocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.488568:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleDataMetaInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.491036:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/StringTokenizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.493676:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.497120:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/AccessController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.499454:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/DateFormatProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.501728:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AvailableLanguageTags.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.504104:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LanguageTag.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.507461:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/SimpleDateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.512901:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/AttributedCharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.514668:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/CharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.519489:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimeZone.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.567437:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.570206:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfoFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.573686:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/calendar/tzdb.dat", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.585673:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.587569:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInput.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.601156:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Calendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.604158:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/spi/CalendarProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.606217:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.608468:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/GregorianCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.612157:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.614630:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of sun.util.calendar.Gregorian
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.614659:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/Gregorian.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.616790:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/BaseCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.618797:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/AbstractCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.621016:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataUtility.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.623087:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CalendarDataProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.624753:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleServiceProviderPool.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.627173:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/BreakIteratorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.628591:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/CollatorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.630413:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.632431:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DecimalFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.634654:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/NumberFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.636555:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CurrencyNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.638729:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.640478:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/TimeZoneNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.643252:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.645933:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedExceptionAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.648024:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ServiceLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.652286:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleResources.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.657356:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ref/ReferenceQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.660022:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/LocaleData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.662750:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.671469:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.671492:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/CalendarData.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.674414:INFO:CONSOLE(16968)] "JSUtil caching 1780 bytes for swingjs/j2s/sun/util/resources/CalendarData.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.674439:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of java.util.PropertyResourceBundle
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.674451:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/PropertyResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.678807:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.678970:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.681043:INFO:CONSOLE(16968)] "JSUtil caching 1943 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.681403:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.681619:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.684022:INFO:CONSOLE(16968)] "JSUtil caching 1786 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.684959:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.685075:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.685380:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.686047:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarDate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.689761:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.693224:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.695670:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/FormatData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.698976:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/ParallelListResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.703420:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.704446:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en_GB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.708166:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/NumberFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.710983:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.714759:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.720451:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/FieldPosition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.722575:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DigitList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.724932:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/math/RoundingMode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.732135:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/LaunchUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.734153:INFO:CONSOLE(16968)] "Jalview Test Version: TEST
error	08-Dec-2024 00:07:07	Jalview Test Installation: unknown
error	08-Dec-2024 00:07:07	Channel: test-release
error	08-Dec-2024 00:07:07	Build Date: unknown
error	08-Dec-2024 00:07:07	Preferences file: unknown
error	08-Dec-2024 00:07:07	Log file: unknown
error	08-Dec-2024 00:07:07	Java version: 1.8
error	08-Dec-2024 00:07:07	Java home: https://.
error	08-Dec-2024 00:07:07	Java launch class: unknown
error	08-Dec-2024 00:07:07	Java platform: Mozilla/5.0  5.0 (X11) (Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/114.0.0.0 Safari/537.36)
error	08-Dec-2024 00:07:07	Java LAF: SwingJS (swingjs.plaf.HTML5LookAndFeel)
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.734461:INFO:CONSOLE(26)] "Using default properties file '/TEMP/swingjs/.jalview_test_properties'
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.734624:INFO:CONSOLE(26)] "Falling back to properties file '/TEMP/swingjs/.jalview_properties'
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.734644:INFO:CONSOLE(26)] "Could not load bootstrap preferences file '/TEMP/swingjs/.jalview_properties'
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.735455:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.738295:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.739543:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/BuildDetails.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.742194:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/BuildDetailsI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.743121:INFO:CONSOLE(16968)] "Jalview Test version: 2.11.4.1-test (Source git-commit:6d1fc3490c [releases/Release_2_11_4_Branch])
error	08-Dec-2024 00:07:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.743665:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/ArgsParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.747930:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Vector.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.751044:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.755081:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLogger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.758149:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerLog4j.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.760763:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Runtime.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.763812:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ApplicationShutdownHooks.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.766021:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Shutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.768902:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.771026:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.772684:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.774876:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/sifts/SiftsSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.776905:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/urls/IdOrgSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.779096:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/PIRFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.781468:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.783923:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileParse.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.786125:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileReaderI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.788014:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileWriterI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.790790:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/ArgParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.794006:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.796072:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/JumboEnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.799131:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ArgParserUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.801914:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormats.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.803803:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.805946:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormatI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.813983:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/UserAgent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.815935:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/Desktop.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:07	[11464:11464:1208/000707.820660:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/jbgui/GDesktop.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.010636:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.013065:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/basic/BasicBorders.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.015437:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/Constructor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.017526:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AccessibleObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.019351:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AnnotatedElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.021555:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/ButtonListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.024115:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/AncestorListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.026530:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentInputMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.028237:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ComponentInputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.029987:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.042946:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BorderFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.045167:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/BevelBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.079211:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JCheckBoxMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.081608:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JToggleButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.083973:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.085679:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.087407:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRadioButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.104208:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/APQHandlers.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.106515:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/MessageManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.110460:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Formatter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.114344:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Pattern.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.118929:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Matcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.123513:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/MatchResult.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.127400:INFO:CONSOLE(16968)] "INFO: Getting messages for lang: en_GB
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.127434:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages.properties
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.129809:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.147121:INFO:CONSOLE(16968)] "JSUtil caching 90933 bytes for swingjs/j2s/lang/Messages.properties
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.163049:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en.properties
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.163751:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.166372:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en_GB.properties
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.166399:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.171881:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.173979:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.176102:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/font/FontRenderContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.191500:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.193995:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper8.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.195746:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapperI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.197585:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.200662:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.203163:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.204812:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.229926:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ToolTipManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.232800:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.234868:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Timer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.237722:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.240240:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.243057:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPopupMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.245701:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.247834:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/JQueryUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.254338:INFO:CONSOLE(16968)] "JSUtil getting Java resource swingjs/jquery/j2sMenu.js
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.254597:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/j2sMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.256391:INFO:CONSOLE(16968)] "Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [24845]
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.258221:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuKeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.260929:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.264897:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/CompoundBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.269355:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JSeparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.271770:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.273346:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.302027:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyboardManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.330820:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SizeRequirements.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.343468:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.370966:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/JalviewChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.373435:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executors.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.376976:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/TimeUnit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.380042:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/LinkedBlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.382097:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.383901:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/BlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.385660:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/atomic/AtomicInteger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.387577:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/ReentrantLock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.389295:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Lock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.391026:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractQueuedSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.393401:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractOwnableSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.395652:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Condition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.397264:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadPoolExecutor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.399776:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/AbstractExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.401890:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.403512:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.408880:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/RejectedExecutionHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.411186:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.413368:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Semaphore.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.415426:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureSelectionManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.419088:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JDesktopPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.421756:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSDesktopPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.427328:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultDesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.429432:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.434957:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTarget.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.437334:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTargetContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.439191:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/SystemFlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.441074:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.442684:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.445872:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.446152:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/JalviewTaskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.448101:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Taskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.451423:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/Resizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.453559:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSFunction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.471092:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.473137:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Commands.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.476078:INFO:CONSOLE(16968)] "WARN: Error when running commands
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.476237:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.499264:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/net/ssl/HttpsURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.503032:INFO:CONSOLE(10504)] "xhr.open binary async=false url=https://www.jalview.org/jalview-js//swingjs/j2s/build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.517733:INFO:CONSOLE(26)] "Non-fatal exception when checking version at https://www.jalview.org/jalview-js//swingjs/j2s/build_properties:
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.520101:INFO:CONSOLE(26)] "java.io.FileNotFoundException: opening https://www.jalview.org/jalview-js//swingjs/j2s/build_properties
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.520370:INFO:CONSOLE(26)] "anonymous.anonymous(Unknown Source)
error	08-Dec-2024 00:07:08	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.533823:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/HTML5CanvasContext2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.536750:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.538738:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunGraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.573784:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/CausedFocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.576461:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.579479:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimSort.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.582928:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ListIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.651571:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/SentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.658236:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	08-Dec-2024 00:07:08	[11464:11464:1208/000708.715972:WARNING:pref_notifier_impl.cc(41)] Pref observer for media_router.cast_allow_all_ips found at shutdown.
build	08-Dec-2024 00:07:13	
build	08-Dec-2024 00:07:13	> Task :jalviewjsLaunchTest
build	08-Dec-2024 00:07:13	Found line '[11464:11464:1208/000708.445872:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP'
build	08-Dec-2024 00:07:13	:jalviewjsLaunchTest (Thread[Execution worker for ':',5,main]) completed. Took 11.297 secs.
build	08-Dec-2024 00:07:13	:jalviewjs (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:13	
build	08-Dec-2024 00:07:13	> Task :jalviewjs
build	08-Dec-2024 00:07:13	Skipping task ':jalviewjs' as it has no actions.
build	08-Dec-2024 00:07:13	:jalviewjs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:07:13	producer locations for task group 0 (Thread[Execution worker for ':',5,main]) started.
build	08-Dec-2024 00:07:13	producer locations for task group 1 (Thread[Execution worker for ':' Thread 3,5,main]) started.
build	08-Dec-2024 00:07:13	producer locations for task group 1 (Thread[Execution worker for ':' Thread 3,5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:07:13	producer locations for task group 2 (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	08-Dec-2024 00:07:13	producer locations for task group 2 (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:07:13	producer locations for task group 0 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	08-Dec-2024 00:07:13	
build	08-Dec-2024 00:07:13	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	08-Dec-2024 00:07:13	
build	08-Dec-2024 00:07:13	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	08-Dec-2024 00:07:13	
build	08-Dec-2024 00:07:13	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	08-Dec-2024 00:07:13	
build	08-Dec-2024 00:07:13	Execution optimizations have been disabled for 2 invalid unit(s) of work during this build to ensure correctness.
build	08-Dec-2024 00:07:13	Please consult deprecation warnings for more details.
build	08-Dec-2024 00:07:13	
build	08-Dec-2024 00:07:13	BUILD SUCCESSFUL in 1m 38s
build	08-Dec-2024 00:07:13	27 actionable tasks: 24 executed, 3 up-to-date
simple	08-Dec-2024 00:07:14	Finished task 'JalviewJS ${bamboo.CHANNEL} release' with result: Success
command	08-Dec-2024 00:07:14	Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
simple	08-Dec-2024 00:07:14	Starting task 'Create tar of getdown ${bamboo.CHANNEL} channel website' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	08-Dec-2024 00:07:14	Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job #32 (JB-GTC0-JOB1-32)'\n ... running command line: \n/srv/bamboo/bamboo-home/temp/JB-GTC0-JOB1-32-ScriptBuildTask-2985512947924102817.sh\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=releases/Release_2_11_4_Branch\nbamboo_repository_46497969_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_repository_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GTC0-JOB1\nbamboo_shortPlanName=releases-Release_2_11_4_Branch\nbamboo_planRepository_name=Jalview Git\nbamboo_buildNumber=32\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_repository_46497969_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch\nbamboo_shortPlanKey=GTC0\nbamboo_repository_46497969_git_username=\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_46497969_name=Jalview Git\nbamboo_buildTimeStamp=2024-12-08T00:00:00.162Z\nbamboo_repository_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultKey=JB-GTC0-JOB1-32\nbamboo_repository_branch_name=releases/Release_2_11_4_Branch\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_46497969_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_7=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 --info eclipse jalviewjsCreateJ2sSettings jalviewjs\nbamboo_repository_name=Jalview Git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC0 clean getdown shadowJar\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=releases/Release_2_11_4_Branch\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=releases/Release_2_11_4_Branch\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301537\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_46497969_branch_name=releases/Release_2_11_4_Branch\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planKey=JB-GTC0\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_8=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 getdown shadowJar\nbamboo_repository_46497969_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_1_branchName=releases/Release_2_11_4_Branch\n
build	08-Dec-2024 00:07:14	11/
build	08-Dec-2024 00:07:14	11/channel_launch-test-release.jvl
build	08-Dec-2024 00:07:14	11/install/
build	08-Dec-2024 00:07:14	11/install/build_properties
build	08-Dec-2024 00:07:14	11/install/getdown-launcher.jar
build	08-Dec-2024 00:07:14	11/install/getdown.txt
build	08-Dec-2024 00:07:14	11/digest2.txt
build	08-Dec-2024 00:07:14	11/channel.props
build	08-Dec-2024 00:07:14	11/getdown-launcher-new.jar
build	08-Dec-2024 00:07:14	11/alt/
build	08-Dec-2024 00:07:14	11/alt/Jmol-NO_LOG4J-14.31.53.jar
build	08-Dec-2024 00:07:14	11/alt/log4j-core-2.17.1.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-ant-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/apache-mime4j-0.6.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-console-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/axis.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-nio-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/javax.activation-api-1.2.0.jar
build	08-Dec-2024 00:07:14	11/alt/jaxb-runtime-2.3.2.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-astbuilder-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/commons-math3-3.6.1.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-json-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/httpclient-4.0.3.jar
build	08-Dec-2024 00:07:14	11/alt/jaxws-api-2.3.1.jar
build	08-Dec-2024 00:07:14	11/alt/saaj-impl.jar
build	08-Dec-2024 00:07:14	11/alt/mail-MODULE.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-groovydoc-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/httpcore-4.0.1.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-test-junit5-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/regex.jar
build	08-Dec-2024 00:07:14	11/alt/jetty-http-9.2.10.v20150310.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-macro-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/commons-discovery.jar
build	08-Dec-2024 00:07:14	11/alt/biojava-ontology-4.1.0.jar
build	08-Dec-2024 00:07:14	11/alt/jetty-io-9.2.10.v20150310.jar
build	08-Dec-2024 00:07:14	11/alt/istack-commons-runtime.jar
build	08-Dec-2024 00:07:14	11/alt/jersey-json-1.19.4.jar
build	08-Dec-2024 00:07:14	11/alt/gmbal-api-only-MODULE.jar
build	08-Dec-2024 00:07:14	11/alt/javax.xml.soap-api-1.4.0.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-testng-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/groovy-groovysh-4.0.15.jar
build	08-Dec-2024 00:07:14	11/alt/commons-codec-1.3.jar
build	08-Dec-2024 00:07:14	11/alt/jetty-server-9.2.10.v20150310.jar
build	08-Dec-2024 00:07:14	11/alt/javaparser-core-3.25.5.jar
build	08-Dec-2024 00:07:15	11/alt/jfreesvg-3.4.3.jar
build	08-Dec-2024 00:07:15	11/alt/log4j-slf4j18-impl-2.17.1.jar
build	08-Dec-2024 00:07:15	11/alt/commons-logging-1.1.1.jar
build	08-Dec-2024 00:07:15	11/alt/slf4j-nop-1.7.36.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-sql-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/VARNAv3-93.jar
build	08-Dec-2024 00:07:15	11/alt/json-simple-1.1.1.jar
build	08-Dec-2024 00:07:15	11/alt/flatlaf-3.2.jar
build	08-Dec-2024 00:07:15	11/alt/FastInfoset.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-jsr223-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/javax.annotation-api-1.3.2.jar
build	08-Dec-2024 00:07:15	11/alt/javax.xml.rpc-api-1.1.2.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/jsoup-1.8.1.jar
build	08-Dec-2024 00:07:15	11/alt/biojava-core-4.1.0.jar
build	08-Dec-2024 00:07:15	11/alt/jaxb-api-2.3.1.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-cli-commons-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/jalview.jar
build	08-Dec-2024 00:07:15	11/alt/jersey-client-1.19.4.jar
build	08-Dec-2024 00:07:15	11/alt/javax.servlet-api-4.0.1.jar
build	08-Dec-2024 00:07:15	11/alt/policy-2.7.6.jar
build	08-Dec-2024 00:07:15	11/alt/xercesImpl.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-yaml-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/flatlaf-extras-3.2.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-typecheckers-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-xml-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-toml-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/jetty-util-9.2.10.v20150310.jar
build	08-Dec-2024 00:07:15	11/alt/slf4j-api-1.7.36.jar
build	08-Dec-2024 00:07:15	11/alt/jersey-core-1.19.4.jar
build	08-Dec-2024 00:07:15	11/alt/txw2-2.3.2.jar
build	08-Dec-2024 00:07:15	11/alt/jswingreader-0.3.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-ginq-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-templates-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/intervalstore-v1.1.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-jmx-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/getdown-core.jar
build	08-Dec-2024 00:07:15	11/alt/jsr311-api-1.1.1.jar
build	08-Dec-2024 00:07:15	11/alt/jaxws-rt-java9.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-swing-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/groovy-macro-library-4.0.15.jar
build	08-Dec-2024 00:07:15	11/alt/vamsas-client.jar
build	08-Dec-2024 00:07:15	11/alt/httpmime-4.0.3.jar
build	08-Dec-2024 00:07:15	11/alt/htsjdk-2.23.0.jar
build	08-Dec-2024 00:07:16	11/alt/stax-ex-1.8.1.jar
build	08-Dec-2024 00:07:16	11/alt/build_properties
build	08-Dec-2024 00:07:16	11/alt/groovy-docgenerator-4.0.15.jar
build	08-Dec-2024 00:07:16	11/alt/groovy-cli-picocli-4.0.15.jar
build	08-Dec-2024 00:07:16	11/alt/stax2-api-4.2.jar
build	08-Dec-2024 00:07:16	11/alt/groovy-datetime-4.0.15.jar
build	08-Dec-2024 00:07:16	11/alt/java-json.jar
build	08-Dec-2024 00:07:16	11/alt/log4j-api-2.17.1.jar
build	08-Dec-2024 00:07:16	11/alt/libquaqua-8.0.jnilib.jar
build	08-Dec-2024 00:07:16	11/alt/mimepull-1.9.11.jar
build	08-Dec-2024 00:07:16	11/alt/groovy-contracts-4.0.15.jar
build	08-Dec-2024 00:07:16	11/alt/groovy-test-4.0.15.jar
build	08-Dec-2024 00:07:16	11/alt/jhall.jar
build	08-Dec-2024 00:07:16	11/alt/groovy-servlet-4.0.15.jar
build	08-Dec-2024 00:07:16	11/alt/jabaws-min-client-NO_LOG4J-2.2.1.jar
build	08-Dec-2024 00:07:16	11/alt/groovy-dateutil-4.0.15.jar
build	08-Dec-2024 00:07:16	11/alt/libquaqua64-8.0.jnilib.jar
build	08-Dec-2024 00:07:16	11/alt/miglayout-4.0-swing.jar
build	08-Dec-2024 00:07:16	11/alt/streambuffer-1.5.7.jar
build	08-Dec-2024 00:07:16	11/alt/javax.jws-api-1.1.jar
build	08-Dec-2024 00:07:16	11/alt/wsdl4j-1.6.3.jar
build	08-Dec-2024 00:07:16	11/resource/
build	08-Dec-2024 00:07:16	11/resource/jalview_test-release_getdown_background_error.png
build	08-Dec-2024 00:07:16	11/resource/jalview_test-release_getdown_background_initialising.png
build	08-Dec-2024 00:07:16	11/resource/jalview_test-release_logo.png
build	08-Dec-2024 00:07:16	11/resource/jalview_test-release_logo.icns
build	08-Dec-2024 00:07:16	11/resource/jalview_getdown_progress_bar.png
build	08-Dec-2024 00:07:16	11/resource/jalview_test-release_getdown_background.png
build	08-Dec-2024 00:07:16	11/resource/getdown-core.jar
build	08-Dec-2024 00:07:16	11/getdown-launcher.jar
build	08-Dec-2024 00:07:16	11/getdown.txt
build	08-Dec-2024 00:07:16	11/bin/
build	08-Dec-2024 00:07:16	11/bin/update.sh
build	08-Dec-2024 00:07:16	11/bin/jalview.ps1
build	08-Dec-2024 00:07:16	11/bin/update.ps1
build	08-Dec-2024 00:07:16	11/bin/jalview_test_update.ps1
build	08-Dec-2024 00:07:16	11/bin/jalview_test.ps1
build	08-Dec-2024 00:07:16	11/bin/jalview_test_update.bat
build	08-Dec-2024 00:07:16	11/bin/jalview_test.bat
build	08-Dec-2024 00:07:16	11/bin/jalview.sh
build	08-Dec-2024 00:07:16	11/digest.txt
build	08-Dec-2024 00:07:16	1.8/
build	08-Dec-2024 00:07:16	1.8/channel_launch-test-release.jvl
build	08-Dec-2024 00:07:16	1.8/install/
build	08-Dec-2024 00:07:16	1.8/install/build_properties
build	08-Dec-2024 00:07:16	1.8/install/getdown-launcher.jar
build	08-Dec-2024 00:07:16	1.8/install/getdown.txt
build	08-Dec-2024 00:07:16	1.8/digest2.txt
build	08-Dec-2024 00:07:16	1.8/channel.props
build	08-Dec-2024 00:07:16	1.8/getdown-launcher-new.jar
build	08-Dec-2024 00:07:16	1.8/alt/
build	08-Dec-2024 00:07:16	1.8/alt/Jmol-NO_LOG4J-14.31.53.jar
build	08-Dec-2024 00:07:16	1.8/alt/log4j-core-2.17.1.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-ant-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/apache-mime4j-0.6.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-console-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/axis.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-nio-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-astbuilder-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/commons-math3-3.6.1.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-json-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/httpclient-4.0.3.jar
build	08-Dec-2024 00:07:16	1.8/alt/jaxrpc.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-groovydoc-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/httpcore-4.0.1.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-test-junit5-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/regex.jar
build	08-Dec-2024 00:07:16	1.8/alt/jetty-http-9.2.10.v20150310.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-macro-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/commons-discovery.jar
build	08-Dec-2024 00:07:16	1.8/alt/biojava-ontology-4.1.0.jar
build	08-Dec-2024 00:07:16	1.8/alt/jetty-io-9.2.10.v20150310.jar
build	08-Dec-2024 00:07:16	1.8/alt/jersey-json-1.19.4.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-testng-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-groovysh-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/commons-codec-1.3.jar
build	08-Dec-2024 00:07:16	1.8/alt/jetty-server-9.2.10.v20150310.jar
build	08-Dec-2024 00:07:16	1.8/alt/javaparser-core-3.25.5.jar
build	08-Dec-2024 00:07:16	1.8/alt/jfreesvg-3.4.3.jar
build	08-Dec-2024 00:07:16	1.8/alt/log4j-slf4j18-impl-2.17.1.jar
build	08-Dec-2024 00:07:16	1.8/alt/commons-logging-1.1.1.jar
build	08-Dec-2024 00:07:16	1.8/alt/slf4j-nop-1.7.36.jar
build	08-Dec-2024 00:07:16	1.8/alt/groovy-sql-4.0.15.jar
build	08-Dec-2024 00:07:16	1.8/alt/VARNAv3-93.jar
build	08-Dec-2024 00:07:16	1.8/alt/json-simple-1.1.1.jar
build	08-Dec-2024 00:07:16	1.8/alt/flatlaf-3.2.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-jsr223-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/jsoup-1.8.1.jar
build	08-Dec-2024 00:07:17	1.8/alt/biojava-core-4.1.0.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-cli-commons-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/jalview.jar
build	08-Dec-2024 00:07:17	1.8/alt/wsdl4j.jar
build	08-Dec-2024 00:07:17	1.8/alt/jersey-client-1.19.4.jar
build	08-Dec-2024 00:07:17	1.8/alt/xercesImpl.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-yaml-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/flatlaf-extras-3.2.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-typecheckers-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/servlet-api-3.1.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-xml-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-toml-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/jetty-util-9.2.10.v20150310.jar
build	08-Dec-2024 00:07:17	1.8/alt/xml-apis.jar
build	08-Dec-2024 00:07:17	1.8/alt/slf4j-api-1.7.36.jar
build	08-Dec-2024 00:07:17	1.8/alt/jersey-core-1.19.4.jar
build	08-Dec-2024 00:07:17	1.8/alt/jswingreader-0.3.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-ginq-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-templates-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/activation.jar
build	08-Dec-2024 00:07:17	1.8/alt/intervalstore-v1.1.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-jmx-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/getdown-core.jar
build	08-Dec-2024 00:07:17	1.8/alt/jsr311-api-1.1.1.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-swing-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-macro-library-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/vamsas-client.jar
build	08-Dec-2024 00:07:17	1.8/alt/saaj.jar
build	08-Dec-2024 00:07:17	1.8/alt/httpmime-4.0.3.jar
build	08-Dec-2024 00:07:17	1.8/alt/htsjdk-2.23.0.jar
build	08-Dec-2024 00:07:17	1.8/alt/build_properties
build	08-Dec-2024 00:07:17	1.8/alt/groovy-docgenerator-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/mail.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-cli-picocli-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-datetime-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/java-json.jar
build	08-Dec-2024 00:07:17	1.8/alt/log4j-api-2.17.1.jar
build	08-Dec-2024 00:07:17	1.8/alt/libquaqua-8.0.jnilib.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-contracts-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-test-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/jhall.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-servlet-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/jabaws-min-client-NO_LOG4J-2.2.1.jar
build	08-Dec-2024 00:07:17	1.8/alt/groovy-dateutil-4.0.15.jar
build	08-Dec-2024 00:07:17	1.8/alt/libquaqua64-8.0.jnilib.jar
build	08-Dec-2024 00:07:17	1.8/alt/miglayout-4.0-swing.jar
build	08-Dec-2024 00:07:17	1.8/resource/
build	08-Dec-2024 00:07:17	1.8/resource/jalview_test-release_getdown_background_error.png
build	08-Dec-2024 00:07:17	1.8/resource/jalview_test-release_getdown_background_initialising.png
build	08-Dec-2024 00:07:17	1.8/resource/jalview_test-release_logo.png
build	08-Dec-2024 00:07:17	1.8/resource/jalview_test-release_logo.icns
build	08-Dec-2024 00:07:17	1.8/resource/jalview_getdown_progress_bar.png
build	08-Dec-2024 00:07:17	1.8/resource/jalview_test-release_getdown_background.png
build	08-Dec-2024 00:07:17	1.8/resource/getdown-core.jar
build	08-Dec-2024 00:07:17	1.8/getdown-launcher.jar
build	08-Dec-2024 00:07:18	1.8/getdown.txt
build	08-Dec-2024 00:07:18	1.8/bin/
build	08-Dec-2024 00:07:18	1.8/bin/update.sh
build	08-Dec-2024 00:07:18	1.8/bin/jalview.ps1
build	08-Dec-2024 00:07:18	1.8/bin/update.ps1
build	08-Dec-2024 00:07:18	1.8/bin/jalview_test_update.ps1
build	08-Dec-2024 00:07:18	1.8/bin/jalview_test.ps1
build	08-Dec-2024 00:07:18	1.8/bin/jalview_test_update.bat
build	08-Dec-2024 00:07:18	1.8/bin/jalview_test.bat
build	08-Dec-2024 00:07:18	1.8/bin/jalview.sh
build	08-Dec-2024 00:07:18	1.8/digest.txt
simple	08-Dec-2024 00:07:18	Finished task 'Create tar of getdown ${bamboo.CHANNEL} channel website' with result: Success
command	08-Dec-2024 00:07:18	Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
simple	08-Dec-2024 00:07:18	Starting task 'Create tar of DEVELOP channel executable jar' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	08-Dec-2024 00:07:18	Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job #32 (JB-GTC0-JOB1-32)'\n ... running command line: \n/srv/bamboo/bamboo-home/temp/JB-GTC0-JOB1-32-ScriptBuildTask-3690227006545495361.sh\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=releases/Release_2_11_4_Branch\nbamboo_repository_46497969_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_repository_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GTC0-JOB1\nbamboo_shortPlanName=releases-Release_2_11_4_Branch\nbamboo_planRepository_name=Jalview Git\nbamboo_buildNumber=32\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_repository_46497969_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch\nbamboo_shortPlanKey=GTC0\nbamboo_repository_46497969_git_username=\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_46497969_name=Jalview Git\nbamboo_buildTimeStamp=2024-12-08T00:00:00.162Z\nbamboo_repository_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_4=/srv/bamboo/bamboo-home/temp/JB-GTC0-JOB1-32-ScriptBuildTask-2985512947924102817.sh\nbamboo_repository_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultKey=JB-GTC0-JOB1-32\nbamboo_repository_branch_name=releases/Release_2_11_4_Branch\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_46497969_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_7=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 --info eclipse jalviewjsCreateJ2sSettings jalviewjs\nbamboo_repository_name=Jalview Git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC0 clean getdown shadowJar\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=releases/Release_2_11_4_Branch\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=releases/Release_2_11_4_Branch\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301537\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_46497969_branch_name=releases/Release_2_11_4_Branch\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planKey=JB-GTC0\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_8=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 getdown shadowJar\nbamboo_repository_46497969_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_1_branchName=releases/Release_2_11_4_Branch\n
build	08-Dec-2024 00:07:18	/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1/build
build	08-Dec-2024 00:07:18	executable_jar/
build	08-Dec-2024 00:07:18	executable_jar/jalview-all-2.11.4.1-test-j1.8.jar.sha256
build	08-Dec-2024 00:07:18	executable_jar/jalview-all-2.11.4.1-test-j11.jar.sha256
build	08-Dec-2024 00:07:18	executable_jar/jalview-all-2.11.4.1-test-j11.jar
build	08-Dec-2024 00:07:20	executable_jar/jalview-all-2.11.4.1-test-j1.8.jar
simple	08-Dec-2024 00:07:21	Finished task 'Create tar of DEVELOP channel executable jar' with result: Success
command	08-Dec-2024 00:07:21	Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
simple	08-Dec-2024 00:07:21	Starting task 'create tar of JalviewJS site' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	08-Dec-2024 00:07:21	Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job #32 (JB-GTC0-JOB1-32)'\n ... running command line: \n/srv/bamboo/bamboo-home/temp/JB-GTC0-JOB1-32-ScriptBuildTask-2902381141729103924.sh\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=releases/Release_2_11_4_Branch\nbamboo_repository_46497969_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_repository_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GTC0-JOB1\nbamboo_shortPlanName=releases-Release_2_11_4_Branch\nbamboo_planRepository_name=Jalview Git\nbamboo_buildNumber=32\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_repository_46497969_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC0-JOB1-32\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch\nbamboo_shortPlanKey=GTC0\nbamboo_repository_46497969_git_username=\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_repository_46497969_name=Jalview Git\nbamboo_buildTimeStamp=2024-12-08T00:00:00.162Z\nbamboo_repository_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_5=/srv/bamboo/bamboo-home/temp/JB-GTC0-JOB1-32-ScriptBuildTask-3690227006545495361.sh\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_4=/srv/bamboo/bamboo-home/temp/JB-GTC0-JOB1-32-ScriptBuildTask-2985512947924102817.sh\nbamboo_repository_git_branch=releases/Release_2_11_4_Branch\nbamboo_buildResultKey=JB-GTC0-JOB1-32\nbamboo_repository_branch_name=releases/Release_2_11_4_Branch\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - releases-Release_2_11_4_Branch - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_46497969_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_7=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 --info eclipse jalviewjsCreateJ2sSettings jalviewjs\nbamboo_repository_name=Jalview Git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC0 clean getdown shadowJar\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=releases/Release_2_11_4_Branch\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_branchDisplayName=releases/Release_2_11_4_Branch\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=releases/Release_2_11_4_Branch\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301537\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_46497969_branch_name=releases/Release_2_11_4_Branch\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC0-JOB1\nbamboo_planKey=JB-GTC0\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_8=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC0 getdown shadowJar\nbamboo_repository_46497969_previous_revision_number=6d1fc3490ca522df0ad2f6f25cadcff87a91eec9\nbamboo_planRepository_1_branchName=releases/Release_2_11_4_Branch\n
build	08-Dec-2024 00:07:22	total 288
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:06 _
build	08-Dec-2024 00:07:22	-rw-r--r--  1 bamboo bamboo    150 Dec  8 00:07 AmbiguityCodes.dat
build	08-Dec-2024 00:07:22	-rw-r--r--  1 bamboo bamboo    474 Dec  8 00:07 authors.props
build	08-Dec-2024 00:07:22	-rw-r--r--  1 bamboo bamboo    905 Dec  8 00:07 channel.props
build	08-Dec-2024 00:07:22	drwxr-xr-x  5 bamboo bamboo   4096 Dec  8 00:06 com
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:07 core
build	08-Dec-2024 00:07:22	drwxr-xr-x  3 bamboo bamboo   4096 Dec  8 00:06 darrylbu
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:07 default_images
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:06 _ES6
build	08-Dec-2024 00:07:22	drwxr-xr-x  4 bamboo bamboo   4096 Dec  8 00:06 ext
build	08-Dec-2024 00:07:22	drwxr-xr-x  3 bamboo bamboo   4096 Dec  8 00:06 fr
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:07 fts
build	08-Dec-2024 00:07:22	-rw-r--r--  1 bamboo bamboo  15295 Dec  8 00:07 GeneticCodes.dat
build	08-Dec-2024 00:07:22	drwxr-xr-x  3 bamboo bamboo   4096 Dec  8 00:06 gnu
build	08-Dec-2024 00:07:22	drwxr-xr-x  3 bamboo bamboo   4096 Dec  8 00:06 gov
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:07 images
build	08-Dec-2024 00:07:22	drwxr-xr-x  5 bamboo bamboo   4096 Dec  8 00:06 intervalstore
build	08-Dec-2024 00:07:22	drwxr-xr-x 33 bamboo bamboo   4096 Dec  8 00:06 jalview
build	08-Dec-2024 00:07:22	drwxr-xr-x 15 bamboo bamboo   4096 Dec  8 00:06 java
build	08-Dec-2024 00:07:22	drwxr-xr-x  8 bamboo bamboo   4096 Dec  8 00:06 javajs
build	08-Dec-2024 00:07:22	drwxr-xr-x 11 bamboo bamboo   4096 Dec  8 00:06 javax
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:07 lang
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:06 mc_view
build	08-Dec-2024 00:07:22	drwxr-xr-x  3 bamboo bamboo   4096 Dec  8 00:06 net
build	08-Dec-2024 00:07:22	drwxr-xr-x  3 bamboo bamboo   4096 Dec  8 00:06 netscape
build	08-Dec-2024 00:07:22	drwxr-xr-x 12 bamboo bamboo   4096 Dec  8 00:06 org
build	08-Dec-2024 00:07:22	drwxr-xr-x  4 bamboo bamboo   4096 Dec  8 00:06 resources
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:07 scoreModel
build	08-Dec-2024 00:07:22	-rw-r--r--  1 bamboo bamboo 144326 Dec  8 00:07 so-xp-simple.obo.zip
build	08-Dec-2024 00:07:22	drwxr-xr-x 15 bamboo bamboo   4096 Dec  8 00:06 sun
build	08-Dec-2024 00:07:22	drwxr-xr-x 10 bamboo bamboo   4096 Dec  8 00:06 swingjs
build	08-Dec-2024 00:07:22	drwxr-xr-x  3 bamboo bamboo   4096 Dec  8 00:06 uk
build	08-Dec-2024 00:07:22	drwxr-xr-x  3 bamboo bamboo   4096 Dec  8 00:06 vamsas
build	08-Dec-2024 00:07:22	drwxr-xr-x  2 bamboo bamboo   4096 Dec  8 00:06 _WASM
build	08-Dec-2024 00:07:22	Cloning into 'jalview-js'...
build	08-Dec-2024 00:07:26	jalview-js/
build	08-Dec-2024 00:07:26	jalview-js/com_stevesoft_pat_RegexWriter.html
build	08-Dec-2024 00:07:26	jalview-js/fr_orsay_lri_varna_applications_NussinovDesignDemo.html
build	08-Dec-2024 00:07:26	jalview-js/applets-nocore.html
build	08-Dec-2024 00:07:26	jalview-js/JalviewJS_jvexamplefile.html
build	08-Dec-2024 00:07:26	jalview-js/test-raf.txt
build	08-Dec-2024 00:07:26	jalview-js/fr_orsay_lri_varna_utils_TranslateFormatRNaseP.html
build	08-Dec-2024 00:07:26	jalview-js/fr_orsay_lri_varna_applications_VARNAcmd.html
build	08-Dec-2024 00:07:26	jalview-js/___j2sflags.htm
build	08-Dec-2024 00:07:26	jalview-js/jalview_bin_JalviewLiteURLRetrieve_applet.html
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/spi/CurrencyNameProvider.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/concurrent/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/concurrent/atomic/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/concurrent/atomic/AtomicStampedReference.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/concurrent/ForkJoinPool.java
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/concurrent/CopyOnWriteArraySet.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/concurrent/ConcurrentLinkedQueue.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/concurrent/Phaser.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/concurrent/PriorityBlockingQueue.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/Locale.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/GregorianCalendar.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/IllformedLocaleException.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/TimeZone.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/prefs/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/Scanner.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/Vector.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/zip/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/zip/CRC32.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/zip/ZipOutputStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/zip/CheckedInputStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/SortedSet.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/ArrayPrefixHelpers.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/ComparableTimSort.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/Optional.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/Set.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/Iterator.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/IllegalFormatPrecisionException.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/BitSet.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/IllegalFormatConversionException.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/ConcurrentModificationException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/DualPivotQuicksort.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/Timer.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/TimerThread.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/jar/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/jar/JarEntry.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/jar/Manifest.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/AbstractSet.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/ArrayList.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/OptionalLong.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/KeyValueHolder.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/regex/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/regex/Matcher.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/CollSer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/util/TreeMap.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/spi/BreakIteratorProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/spi/DateFormatSymbolsProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/spi/CollatorProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/spi/DateFormatProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/PatternEntry.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/ParsePosition.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/MessageFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/DateFormat.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/package.html
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/DecimalFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/EntryPair.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/MergeCollation.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/RuleBasedCollationKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/CalendarBuilder.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/Bidi.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/BreakIterator.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/CharacterIteratorFieldDelegate.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/ParseException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/CharacterIterator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/RuleBasedCollator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/text/NumberFormat.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/URLDecoder.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/URI.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/SocketAddress.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/URL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/Authenticator.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/HttpURLConnection.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/PasswordAuthentication.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/FactoryURLClassLoader.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/MalformedURLException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/UnknownServiceException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/net/UnknownHostException.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/math/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/math/BigDecimal.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/math/BitSieve.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/math/BigInteger.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/math/MutableBigInteger.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/math/SignedMutableBigInteger.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/math/FloatConsts.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/Ser.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/LocalDateTime.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/LocalDate.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ChronoLocalDateTimeImpl.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/HijrahChronology.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/IsoChronology.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ThaiBuddhistEra.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ChronoZonedDateTime.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ChronoZonedDateTimeImpl.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ChronoPeriod.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/MinguoChronology.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/JapaneseChronology.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/JapaneseEra.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/MinguoEra.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ChronoLocalDateImpl.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/JapaneseDate.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ChronoLocalDate.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ChronoLocalDateTime.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ThaiBuddhistDate.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/ThaiBuddhistChronology.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/chrono/AbstractChronology.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/Instant.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/DayOfWeek.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/WeekFields.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/JulianFields.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/TemporalAdjusters.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/ChronoField.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/IsoFields.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/ChronoUnit.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/TemporalField.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/ValueRange.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/TemporalAdjuster.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/temporal/TemporalUnit.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/zone/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/zone/TzdbZoneRulesProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/zone/Ser.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/zone/ZoneOffsetTransitionRule.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/zone/ZoneRulesException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/zone/ZoneOffsetTransition.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/zone/ZoneRules.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/format/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/format/ResolverStyle.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/format/Parsed.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/format/SignStyle.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/format/DateTimeTextProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/time/format/DateTimePrintContext.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/lang/reflect/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/lang/management/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/geom/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/image/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/image/WritableRenderedImage.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Graphics2D.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/datatransfer/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/event/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Font.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/MediaEntry.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/GridBagLayout.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/GradientPaint.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/GraphicsDevice.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/PrintGraphics.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/GraphicsEnvironment.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/EventQueue.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Choice.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/BorderLayout.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Frame.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/PointerInfo.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/DefaultKeyboardFocusManager.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/PrintJob.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/MenuBar.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/color/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/color/ColorSpace.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/AttributeValue.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/AWTEventMulticaster.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/LineBreakMeasurer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/OpenType.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/GlyphVector.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/ShapeGraphicAttribute.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/TransformAttribute.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/FontRenderContext.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/GraphicAttribute.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/ImageGraphicAttribute.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/LayoutPath.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/MultipleMaster.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/TextHitInfo.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/TextMeasurer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/GlyphJustificationInfo.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/CharArrayIterator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/GlyphMetrics.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/TextJustifier.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/TextLayout.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/NumericShaper.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/StyledParagraph.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/LineMetrics.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/TextAttribute.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/font/TextLine.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Label.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/MenuItem.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Transparency.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Scrollbar.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/print/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/print/Paper.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/print/Pageable.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Rectangle.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/JSDialog.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/EventDispatchThread.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/Point.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/IllegalComponentStateException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/TextArea.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/ItemSelectable.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/TextComponent.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/AWTException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/awt/AWTEvent.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/rmi/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/ObjectStreamField.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/File.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/ByteArrayInputStream.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/StreamTokenizer.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/ObjectInputStream.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/CharConversionException.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/FileReader.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/FilenameFilter.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/FileOutputStream.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/NotSerializableException.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/DataOutputStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/FileSystem.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/RandomAccessFile.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/FileWriter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/StringWriter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/DataOutput.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/ObjectStreamConstants.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/PrintStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/CharArrayReader.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/FilterOutputStream.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/Externalizable.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/io/CharArrayWriter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/SecureRandom.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/ECFieldFp.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/PKCS8EncodedKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/ECPrivateKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/RSAKeyGenParameterSpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/RSAPrivateCrtKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/ECPoint.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/InvalidKeySpecException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/DSAParameterSpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/DSAPublicKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/ECPublicKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/DSAPrivateKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/ECParameterSpec.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/RSAMultiPrimePrivateCrtKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/DSAGenParameterSpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/InvalidParameterSpecException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/RSAOtherPrimeInfo.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/ECGenParameterSpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/AlgorithmParameterSpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/ECFieldF2m.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/RSAPublicKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/KeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/RSAPrivateKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/PSSParameterSpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/EllipticCurve.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/MGF1ParameterSpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/spec/X509EncodedKeySpec.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AlgorithmParametersSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/NoSuchAlgorithmException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/UnrecoverableEntryException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/MessageDigest.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/GuardedObject.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Certificate.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Key.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PublicKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/InvalidKeyException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PKCS12Attribute.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PrivilegedActionException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyPair.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AllPermissionCollection.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/SignatureException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/SignedObject.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PermissionCollection.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/DomainLoadStoreParameter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PolicySpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyStore.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/MessageDigestSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/UnresolvedPermissionCollection.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/IdentityScope.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/SecureClassLoader.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/BasicPermission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/DigestInputStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AlgorithmParameters.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/CryptoPrimitive.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AlgorithmParameterGenerator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PermissionsEnumerator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/NotOwnerException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/Group.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/AclNotFoundException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/LastOwnerException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/Owner.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/AclEntry.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/Permission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/acl/Acl.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyRep.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Identity.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AccessControlException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyFactorySpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AllPermission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PermissionsHash.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/DigestException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/CodeSigner.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Principal.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Security.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/SecureRandomSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/ProviderException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/CodeSource.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyPairGeneratorSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AccessControlContext.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/UnrecoverableKeyException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Signer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PrivilegedAction.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyStoreSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyPairGenerator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PrivilegedExceptionAction.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AlgorithmParameterGeneratorSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Permissions.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Policy.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/UnresolvedPermission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/DigestOutputStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/SignatureSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/URIParameter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PKIXRevocationChecker.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CollectionCertStoreParameters.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PKIXCertPathBuilderResult.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertStoreParameters.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathBuilderSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertificateParsingException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertSelector.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertStore.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CRLReason.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/X509CRLEntry.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathBuilder.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/Certificate.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathValidatorResult.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathValidatorSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertificateFactory.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathBuilderResult.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathChecker.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathHelperImpl.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertificateNotYetValidException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PKIXCertPathValidatorResult.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertificateExpiredException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PolicyQualifierInfo.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/X509CRLSelector.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CRL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertStoreSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertificateRevokedException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathParameters.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PKIXBuilderParameters.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertificateFactorySpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/Extension.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/LDAPCertStoreParameters.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PolicyNode.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertStoreException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PKIXReason.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertificateEncodingException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertificateException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CRLSelector.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/X509CertSelector.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/X509Certificate.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/X509Extension.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathBuilderException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/X509CRL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PKIXCertPathChecker.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPath.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/TrustAnchor.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathValidatorException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CertPathValidator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/CRLException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/cert/PKIXParameters.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/PrivateKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/BasicPermissionCollection.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AlgorithmConstraints.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/DomainCombiner.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyFactory.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Permission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Timestamp.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/NoSuchProviderException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AccessController.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyManagementException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/ProtectionDomain.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Signature.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/GeneralSecurityException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/Guard.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/KeyStoreException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/InvalidAlgorithmParameterException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/RSAKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/RSAPrivateKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/DSAKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/ECKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/DSAPrivateKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/RSAPublicKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/DSAPublicKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/RSAPrivateCrtKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/ECPublicKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/DSAParams.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/DSAKeyPairGenerator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/ECPrivateKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/interfaces/RSAMultiPrimePrivateCrtKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/SecurityPermission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/security/AuthProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/beans/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/beans/PropertyChangeSupport.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/beans/PropertyChangeListener.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/beans/IntrospectionException.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/beans/PropertyDescriptor.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/beans/PropertyEditor.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/beans/PropertyChangeEvent.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/beans/PropertyEditorSupport.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/FloatBuffer.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/HeapByteBufferR.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/CharsetDecoder.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/UnmappableCharacterException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/CharacterCodingException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/CoderResult.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/StandardCharsets.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/CharsetEncoder.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/Charset.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/CoderMalfunctionError.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/exceptions
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/IllegalCharsetNameException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/UnsupportedCharsetException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/charset/MalformedInputException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAs-X-Buffer.java.template
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsCharBufferL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/DoubleBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsDoubleBufferB.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsCharBufferRB.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsLongBufferRB.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/HeapFloatBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/X-Buffer.java.template
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsFloatBufferRL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsFloatBufferB.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsDoubleBufferRL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsIntBufferB.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/DirectoryNotEmptyException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/ClosedDirectoryStreamException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/WatchEvent.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/OpenOption.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileSystemLoopException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileSystemNotFoundException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/spi/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/spi/FileTypeDetector.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/spi/FileSystemProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/DosFileAttributes.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/PosixFileAttributes.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/BasicFileAttributes.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/AttributeView.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/FileOwnerAttributeView.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/UserPrincipalNotFoundException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/FileTime.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/GroupPrincipal.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/UserDefinedFileAttributeView.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/UserPrincipalLookupService.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/UserPrincipal.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/AclEntryFlag.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/FileStoreAttributeView.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/FileAttributeView.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/AclEntryType.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/FileAttribute.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/DosFileAttributeView.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/PosixFilePermission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/PosixFilePermissions.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/PosixFileAttributeView.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/AclFileAttributeView.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/attribute/AclEntryPermission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/ProviderMismatchException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/Watchable.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/CopyMoveHelper.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/NotDirectoryException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileAlreadyExistsException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/PathMatcher.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/Path.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/CopyOption.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/DirectoryStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/NotLinkException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/SecureDirectoryStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileSystemAlreadyExistsException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/WatchService.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/NoSuchFileException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileStore.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/InvalidPathException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileSystems.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/SimpleFileVisitor.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileVisitor.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/LinkOption.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/Paths.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileVisitResult.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/ProviderNotFoundException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/AccessDeniedException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileTreeWalker.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/StandardCopyOption.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileVisitOption.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/WatchKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/StandardWatchEventKinds.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/ClosedFileSystemException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/TempFileHelper.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileSystem.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/Files.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/DirectoryIteratorException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/ClosedWatchServiceException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileSystemException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/LinkPermission.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/AccessMode.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/ReadOnlyFileSystemException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/AtomicMoveNotSupportedException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/StandardOpenOption.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/file/FileTreeIterator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/Bits.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/Buffer.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/HeapShortBuffer.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/CharBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsShortBufferRL.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsCharBufferRL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsFloatBufferL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsIntBufferRL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsLongBufferRL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/MappedByteBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/HeapDoubleBuffer.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ShortBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/Heap-X-Buffer.java.template
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/BufferOverflowException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/CharBufferSpliterator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/HeapCharBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteOrder.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/InvalidMarkException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/IntBuffer.java.template
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/AsynchronousByteChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/spi/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/spi/AbstractSelectableChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/spi/AbstractInterruptibleChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/spi/AsynchronousChannelProvider.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/spi/AbstractSelectionKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/spi/AbstractSelector.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/FileChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/FileLock.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/ServerSocketChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/InterruptibleChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/ScatteringByteChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/GatheringByteChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/AsynchronousChannelGroup.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/SelectableChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/Pipe.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/AsynchronousServerSocketChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/AsynchronousChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/MembershipKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/CompletionHandler.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/WritableByteChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/ReadableByteChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/SelectionKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/NetworkChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/SeekableByteChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/AsynchronousFileChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/DatagramChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/exceptions
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/ByteChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/Selector.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/AsynchronousSocketChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/Channel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/SocketChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/MulticastChannel.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/channels/Channels.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/HeapByteBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/HeapIntBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsShortBufferL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsLongBufferL.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/java/nio/ByteBufferAsLongBufferB.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/netscape/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/netscape/javascript/JSObject.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/netscape/javascript/JSException.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/_WASM/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/_WASM/wasi.esm.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/_WASM/README.TXT
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/stream/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/stream/StreamFinalizer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/stream/CloseableDisposerRecord.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/stream/StreamCloser.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/spi/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/spi/RAFImageOutputStreamSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/spi/OutputStreamImageOutputStreamSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/spi/FileImageOutputStreamSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/spi/FileImageInputStreamSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/spi/RAFImageInputStreamSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/spi/InputStreamImageInputStreamSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/LZWStringTable.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/PaletteBuilder.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/LZWCompressor.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/SubImageInputStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/BitFile.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/I18NImpl.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/ReaderUtil.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/ImageUtil.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/StandardMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/InputStreamAdapter.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/I18N.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/StandardMetadataFormatResources.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/iio-plugin.properties
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/BMPConstants.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/BMPImageWriter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/BMPCompressionTypes.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/BMPImageReaderSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/BMPMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/BMPImageWriterSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/BMPImageReader.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/BMPMetadata.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/ImageTypeProducer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGImageMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/MarkerSegment.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/DRIMarkerSegment.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/DHTMarkerSegment.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGStreamMetadataFormatResources.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGImageReader.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/DQTMarkerSegment.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGImageWriterResources.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGImageWriterSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGImageMetadataFormatResources.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JFIFMarkerSegment.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGImageReaderResources.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/AdobeMarkerSegment.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/SOFMarkerSegment.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/SOSMarkerSegment.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/ImageTypeIterator.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGImageWriter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/COMMarkerSegment.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGMetadataFormatResources.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGImageReaderSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGStreamMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/JPEGBuffer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFStreamMetadataFormatResources.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFImageMetadata.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFImageWriter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFImageWriterSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFWritableImageMetadata.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFStreamMetadata.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFImageReader.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFImageReaderSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFImageMetadataFormatResources.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFStreamMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFMetadata.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFWritableStreamMetadata.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFImageMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/GIFImageWriteParam.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/wbmp/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/wbmp/WBMPMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/wbmp/WBMPImageWriterSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/wbmp/WBMPImageReader.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/wbmp/WBMPImageReaderSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/wbmp/WBMPImageWriter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/wbmp/WBMPMetadata.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/PNGImageReader.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/RowFilter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/IDATOutputStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/PNGImageWriterSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/PNGMetadata.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/PNGImageWriter.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/PNGMetadataFormat.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/PNGImageDataEnumeration.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/sun/imageio/plugins/png/PNGImageReaderSpi.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/stevesoft/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/stevesoft/pat/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/stevesoft/pat/RegSyntax.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/stevesoft/pat/UnicodeMath.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/stevesoft/pat/RegOpt.js
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/stevesoft/pat/Range.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/stevesoft/pat/patInf.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/stevesoft/pat/Ctrl.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/github/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/github/reinert/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/com/github/reinert/jjschema/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/AppletPDBViewer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/AppletPDBCanvas.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/Bond.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/Residue.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/MCMatrix.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/Zsort.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/Atom.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/PDBChain.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/PDBCanvas.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/mc_view/PDBfile.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/loops/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/loops/SurfaceType.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/loops/CompositeType.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/loops/Blit.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/loops/XORComposite.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/loops/BlitBg.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/StateTrackableDelegate.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/Surface.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/StateTrackable.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/SurfaceDataProxy.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/SunCompositeContext.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/StateTracker.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/SurfaceData.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/java2d/SunGraphics2D.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/audio/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/audio/AudioDataStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/audio/ContinuousAudioDataStream.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/audio/AudioPlayer.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/audio/AudioData.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/annotation/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/annotation/AnnotationParser.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/annotation/AnnotationType.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/annotation/AnnotationSupport.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/annotation/AnnotationInvocationHandler.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/misc/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/misc/MethodUtil.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/misc/Trampoline.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/misc/FieldUtil.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/misc/ReflectUtil.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/reflect/misc/ConstructorUtil.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/applet/
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/applet/AppletEventMulticaster.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/applet/AppletEvent.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/applet/AppletListener.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/
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build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/UIClientPropertyKey.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/FilePane.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/MenuItemCheckIconFactory.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/SwingUtilities2.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/AccumulativeRunnable.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/UIAction.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/ImageCache.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/DefaultLookup.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/PrintColorUIResource.js
build	08-Dec-2024 00:07:27	jalview-js/swingjs/j2s/sun/swing/table/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UCharacterIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UnicodeSetIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/Replaceable.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UBiDiProps.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UCharacterProperty.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UTF16.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UCharacterPropertyReader.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/ReplaceableUCharacterIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UnicodeSet.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/SymbolTable.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/CharacterIteratorWrapper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UCharacter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/ICUData.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/NormalizerImpl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/ICUBinary.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/TrieIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/RangeValueIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/Utility.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/RuleCharacterIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/Trie.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/UnicodeMatcher.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/normalizer/VersionInfo.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/no/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/no/FormatData_no_NO_NY.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/no/FormatData_no_NO.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/no/JavaTimeSupplementary_no.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/no/FormatData_no.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/no/CollationData_no.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ca/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ca/FormatData_ca.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ca/JavaTimeSupplementary_ca.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ca/CollationData_ca.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fi/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fi/FormatData_fi_FI.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fi/JavaTimeSupplementary_fi.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fi/FormatData_fi.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hr/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hr/CollationData_hr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hr/FormatData_hr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/da/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/da/FormatData_da.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/da/FormatData_da_DK.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/da/JavaTimeSupplementary_da.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ro/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ro/JavaTimeSupplementary_ro.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ru/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ru/FormatData_ru_RU.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ru/CollationData_ru.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ru/FormatData_ru.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ru/JavaTimeSupplementary_ru.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ar/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ar/FormatData_ar.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ar/FormatData_ar_LB.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ar/FormatData_ar_SY.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ar/CollationData_ar.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ar/JavaTimeSupplementary_ar.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/be/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/be/FormatData_be_BY.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/be/FormatData_be.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/be/CollationData_be.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/FormatData_zh_SG.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/JavaTimeSupplementary_zh_TW.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/CollationData_zh_HK.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/JavaTimeSupplementary_zh.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/FormatData_zh_HK.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/CollationData_zh_TW.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/CollationData_zh.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/FormatData_zh.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/FormatData_zh_CN.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/zh/FormatData_zh_TW.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/cs/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/cs/FormatData_cs.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/cs/FormatData_cs_CZ.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/cs/CollationData_cs.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/CharacterBreakIteratorData
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/unorm.icu
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pt/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pt/FormatData_pt.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pt/JavaTimeSupplementary_pt.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pt/JavaTimeSupplementary_pt_PT.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pt/FormatData_pt_BR.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pt/FormatData_pt_PT.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pl/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pl/CollationData_pl.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pl/FormatData_pl_PL.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/pl/FormatData_pl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sv/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sv/FormatData_sv.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sv/FormatData_sv_SE.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sv/CollationData_sv.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sv/JavaTimeSupplementary_sv.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/JavaTimeSupplementary.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hu/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hu/CollationData_hu.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hu/FormatData_hu_HU.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/lt/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/lt/FormatData_lt_LT.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/lt/CollationData_lt.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/lt/JavaTimeSupplementary_lt.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/bg/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/bg/FormatData_bg_BG.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/bg/FormatData_bg.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/bg/CollationData_bg.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/bg/JavaTimeSupplementary_bg.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/et/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/et/FormatData_et_EE.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/et/FormatData_et.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/et/CollationData_et.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/BreakIteratorRules.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/nl/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/nl/FormatData_nl_NL.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/nl/FormatData_nl_BE.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/nl/FormatData_nl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/nl/JavaTimeSupplementary_nl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/de/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/de/FormatData_de_LU.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/de/FormatData_de_CH.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/de/FormatData_de_DE.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/de/JavaTimeSupplementary_de.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/de/FormatData_de.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/de/FormatData_de_AT.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sk/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sk/FormatData_sk_SK.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sk/FormatData_sk.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/CollationData.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sq/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sq/JavaTimeSupplementary_sq.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sq/FormatData_sq.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sq/FormatData_sq_AL.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ja/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ja/CollationData_ja.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ja/JavaTimeSupplementary_ja.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ja/FormatData_ja_JP.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_CR.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_AR.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_US.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_UY.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_PA.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_PY.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_CO.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_HN.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_NI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_GT.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/CollationData_es.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_DO.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_BO.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_PR.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/JavaTimeSupplementary_es.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/es/FormatData_es_MX.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ms/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ms/JavaTimeSupplementary_ms.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ms/FormatData_ms.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ms/FormatData_ms_MY.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/in/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/in/FormatData_in.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/in/FormatData_in_ID.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ga/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ga/FormatData_ga_IE.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ga/JavaTimeSupplementary_ga.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ga/FormatData_ga.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/uprops.icu
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/SentenceBreakIteratorData
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fr/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fr/FormatData_fr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fr/FormatData_fr_CH.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fr/FormatData_fr_CA.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fr/JavaTimeSupplementary_fr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fr/FormatData_fr_FR.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fr/CollationData_fr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/fr/FormatData_fr_BE.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/JavaTimeSupplementary_sr_Latn.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/FormatData_sr_BA.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/FormatData_sr_CS.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/FormatData_sr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/FormatData_sr_ME.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/FormatData_sr_RS.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/CollationData_sr_Latn.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/FormatData_sr_Latn.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/CollationData_sr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sr/FormatData_sr_Latn_ME.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/en/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/en/FormatData_en_NZ.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/iw/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/iw/FormatData_iw.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/el/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/el/FormatData_el_GR.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/is/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/is/FormatData_is_IS.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/is/JavaTimeSupplementary_is.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/lv/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/th/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/th/thai_dict
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/th/FormatData_th.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/th/CollationData_th.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/th/BreakIteratorRules_th.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/th/JavaTimeSupplementary_th.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/th/FormatData_th_TH.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/tr/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/tr/FormatData_tr_TR.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/tr/FormatData_tr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/tr/JavaTimeSupplementary_tr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/tr/CollationData_tr.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sl/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sl/CollationData_sl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sl/JavaTimeSupplementary_sl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/sl/FormatData_sl_SI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mk/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mk/FormatData_mk.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mk/CollationData_mk.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mk/JavaTimeSupplementary_mk.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mk/FormatData_mk_MK.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/WordBreakIteratorData
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/it/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/it/JavaTimeSupplementary_it.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/it/FormatData_it_CH.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/it/FormatData_it.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/it/FormatData_it_IT.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ko/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ko/FormatData_ko.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ko/FormatData_ko_KR.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ko/CollationData_ko.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ko/JavaTimeSupplementary_ko.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/vi/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/vi/FormatData_vi.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/vi/CollationData_vi.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/vi/FormatData_vi_VN.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/FormatData.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/LineBreakIteratorData
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/uk/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/uk/CollationData_uk.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/uk/JavaTimeSupplementary_uk.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/uk/FormatData_uk.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/uk/FormatData_uk_UA.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hi/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hi/CollationData_hi.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hi/JavaTimeSupplementary_hi_IN.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/hi/FormatData_hi_IN.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mt/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mt/FormatData_mt_MT.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mt/JavaTimeSupplementary_mt.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/mt/FormatData_mt.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/resources/ubidi.icu
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/Normalizer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/CompactByteArray.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/ComposedCharIter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/CodePointIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/CharSequenceCodePointIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/UCompactIntArray.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/CharacterIteratorCodePointIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/IntHashtable.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/SupplementaryCharacterData.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/bidi/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/bidi/BidiBase.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/bidi/BidiLine.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/bidi/BidiRun.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/CollatorUtilities.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/text/CharArrayCodePointIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/net/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/net/www/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/net/www/ParseUtil.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/net/www/MessageHeader.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/FormattedFloatingDecimal.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/CacheEntry.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/CRC16.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/BASE64Encoder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/RegexpTarget.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ThreadGroupUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/MessageUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/RegexpPool.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/InvalidJarIndexException.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/SoftCache.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Queue.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/UUDecoder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ServiceConfigurationError.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/UUEncoder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ASCIICaseInsensitiveComparator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/InnocuousThread.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/NativeSignalHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/UCEncoder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ProxyGenerator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/LRUCache.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/TimerTickThread.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaUtilJarAccess.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaLangAccess.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/CEFormatException.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ConditionLock.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/URLClassPath.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaIOAccess.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/SharedSecrets.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/RegexpNode.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/PerfCounter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Service.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/PathPermissions.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ClassFileTransformer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Request.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/PerformanceLogger.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Signal.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaSecurityAccess.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ExtensionInstallationProvider.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Regexp.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/CharacterDecoder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/VM.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/MetaIndex.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaNetHttpCookieAccess.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JarFilter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaSecurityProtectionDomainAccess.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/DoubleConsts.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Unsafe.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ExtensionInfo.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Lock.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/FpUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/FloatingDecimal.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ExtensionDependency.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaIOFileDescriptorAccess.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Contended.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/LIFOQueueEnumerator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Cleaner.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/VMNotification.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/VMSupport.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/HexDumpEncoder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaUtilZipFileAccess.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/RequestProcessor.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/FDBigInteger.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/UCDecoder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Launcher.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Timeable.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Timer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/SignalHandler.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/TimerThread.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/BASE64Decoder.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/CacheEnumerator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/CompoundEnumeration.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/ClassLoaderUtil.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/QueueElement.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/IOUtils.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/Version.java.template
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/JavaNioAccess.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/misc/FloatConsts.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/geom/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/geom/ChainEnd.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/geom/Curve.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/WindowClosingListener.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/shell/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/Graphics2Delegate.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ImageConsumerQueue.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/SunWritableRaster.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ImageDecoder.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/URLImageSource.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ImageFetchable.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/FileImageSource.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/BufImgSurfaceData.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/DataStealer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/BytePackedRaster.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ImagingLib.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ToolkitImage.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ShortBandedRaster.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ImageFormatException.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ImageRepresentation.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/ShortInterleavedRaster.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/image/SurfaceManager.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/EventListenerAggregate.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/AppContext.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/UngrabEvent.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/datatransfer/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/datatransfer/ToolkitThreadBlockedHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/datatransfer/TransferableProxy.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/datatransfer/DataTransferer.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/event/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/awt/MostRecentKeyValue.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/security/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/CompositeGlyphMapper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/FileFontStrike.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/CharToGlyphMapper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/SunLayoutEngine.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/BidiUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/FontStrikeDisposer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/TextSourceLabel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/FontResolver.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/DelegatingShape.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/EAttribute.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/ScriptRunData.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/StrikeMetrics.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/Type1GlyphMapper.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/TextRecord.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/TextSourceLabel.java
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/FileFont.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/Type1Font.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/font/TextLineComponent.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/AbstractBasicFileAttributeView.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/Util.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/AbstractFileTypeDetector.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/AbstractAclFileAttributeView.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/FileOwnerAttributeViewImpl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/Reflect.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/DynamicFileAttributeView.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/Globs.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/AbstractPoller.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/AbstractUserDefinedFileAttributeView.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/AbstractWatchKey.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/fs/NativeBuffer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/cs/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/cs/GBK.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/cs/SingleByte.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/sun/nio/cs/CharsetMapping.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/json/binding/biojs/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/json/binding/biojson/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/httpserver/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/jbgui/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/appletgui/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/RendererListenerI.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/SplitContainerI.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/FeatureRenderer.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/analysis/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/analysis/PairwiseScoreModelI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/analysis/ScoreModelI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/ComplexAlignFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/structures/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/api/structures/JalviewStructureDisplayI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/SetUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/FileUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/imagemaker/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/imagemaker/BitmapImageSizing.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/ErrorLog.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/ArrayUtils.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/dialogrunner/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/TableSorter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/JSONUtils.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/HttpUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/Format.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/Log4j.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/MathUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/Comparison.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/DBRefUtils.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/QuickSort.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/UserAgent.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/ColorUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/UrlConstants.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/CaseInsensitiveString.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/BrowserLauncher.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/LinkedIdentityHashSet.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/ShiftList.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/StringUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/ParseHtmlBodyAndLinks.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/IntRangeComparator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/DnaUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/matcher/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/GroupUrlLink.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/jarInputStreamProvider.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/LaunchUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/ArgParserUtils.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/util/AWTConsole.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/AWSThread.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/ebi/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/HttpClientUtils.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/datamodel/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/params/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/rest/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/rest/params/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/sifts/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/io/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/seqfetcher/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/seqfetcher/DbSourceProxy.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/dbsources/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws2/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws2/jabaws2/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws2/jabaws2/Jws2Instance.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws2/dm/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws2/AWS2Thread.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws2/JabaWsServerQuery.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws2/MsaWSThread.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws1/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws1/MsaWSClient.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws1/JPredClient.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/jws1/MsaWSThread.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/ws/utils/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/log/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/log/JLoggerLog4j.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/log/JLogger.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/log/JalviewAppender.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/controller/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/controller/FeatureSettingsController.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/controller/AlignViewController.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/controller/FeatureSettingsControllerGuiI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/IdwidthAdjuster.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/SplashScreen.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/Desktop.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/CrossRefAction.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/AlignFrame.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/ColourMenuHelper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/FeatureEditor.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/Finder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/OOMWarning.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/AppJmol.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/OptsAndParamsPage.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/AppVarna.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/structurechooser/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/structurechooser/TDBResultAnalyser.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/structurechooser/PDBStructureChooserQuerySource.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/structurechooser/StructureChooserQuerySource.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/PopupMenu.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/PCAPanel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/IProgressIndicator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/AnnotationExporter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/WsJobParameters.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/AnnotationLabels.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/SplitFrame.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/SequenceRenderer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/OptsParametersContainerI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/ChimeraXViewFrame.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/BlogReader.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/CalculationChooser.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/AppJmolBinding.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/SequenceFetcher.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/JDatabaseTree.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/IProgressIndicatorHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/JalviewBooleanRadioButtons.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/JvSwingUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/CutAndPasteTransfer.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/gui/ChannelsRenderer.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Profiles.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/AllRowsIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/ResidueCount.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Annotation.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SearchResults.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/RangeIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/CigarCigar.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/ProfilesI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Provenance.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/VisibleRowsIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SequencePoint.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SequenceDummy.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/AllRowsCollection.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/ContactMapHolder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/MappedFeatures.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Mapping.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/StartRegionIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SequenceFeature.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/AlignmentOrder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/GroupSetHolder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/ASequence.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SequenceCursor.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/AlignedCodon.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/MappingType.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/RangeElementsIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/VisibleContigsIterator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/AllColsCollection.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/AlignedCodonFrame.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SecondaryStructureAnnotation.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SequenceGroup.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SFSortByEnd.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/ContactMatrix.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/ASequenceI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Sequence.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/AlignExportSettingsAdapter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SequenceI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/GroupSetI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/GeneLociI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Point.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/DBRefEntry.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/AlignmentExportData.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/VisibleColsCollection.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/SFSortByBegin.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Profile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/ProvenanceEntry.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Range.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/DBRefSource.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/datamodel/Alignment.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/seqfeatures/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/seqfeatures/FeatureRendererModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/seqfeatures/FeaturesDisplayed.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/seqfeatures/FeatureRendererSettings.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/seqfeatures/FeatureSettingsModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/OverviewDimensions.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/AlignmentViewport.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/ViewportListenerI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/styles/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/styles/ViewStyle.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/OverviewDimensionsShowHidden.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/annotationfilter/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/ViewportRanges.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/PCAModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/OverviewDimensionsHideHidden.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/PaSiMapModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/viewmodel/ViewportProperties.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analytics/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analytics/Plausible.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/api/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/api/FTSData.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/api/FTSRestClientI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/api/GFTSPanelI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/api/StructureFTSRestClientI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/api/FTSDataColumnI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/alphafold/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/alphafold/AlphafoldRestClient.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/threedbeacons/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/threedbeacons/TDB_FTSData.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/threedbeacons/TDBeaconsFTSPanel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/threedbeacons/TDBeaconsFTSRestClient.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/uniprot/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/uniprot/UniProtFTSRestClient.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/uniprot/UniprotFTSPanel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/pdb/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/pdb/PDBFTSPanel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/service/pdb/PDBFTSRestClient.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/core/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/core/FTSRestClient.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/core/FTSRestResponse.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/core/FTSRestRequest.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/core/DecimalFormatTableCellRenderer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/core/FTSDataColumnPreferences.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/fts/core/GFTSPanel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/UrlProviderImpl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/UrlLinkTableModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/applet/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/applet/AppletUrlProviderFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/api/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/api/UrlProviderFactoryI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/api/UrlProviderI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/IdOrgSettings.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/desktop/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/desktop/DesktopUrlProviderFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/UrlProvider.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/UrlLinkDisplay.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/CustomUrlProvider.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/urls/IdentifiersUrlProvider.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/JalviewLiteJsApi.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/json/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/json/JSON.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/JsCallBack.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/MouseOverStructureListener.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/JsSelectionSender.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/web/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/web/WebResource.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/web/ClientResponse.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/web/Client.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/MouseOverListener.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/javascript/JSFunctionExec.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/rest/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/rest/RestHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/exceptions/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/exceptions/JalviewException.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/WSWUBlastClient.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/FileParse.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/VamsasAppDatastore.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/FileFormats.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/StockholmFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/HtmlSvgOutput.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/JnetAnnotationMaker.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/JalviewFileChooser.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/NewickFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/SimpleBlastFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/DBRefFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/TCoffeeScoreFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/PhylipFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/EMBLLikeFlatFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/FileLoader.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/PIRFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/AlignmentFileWriterI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/BLCFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/ScoreMatrixFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/BioJsHTMLOutput.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/MSFfile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/AlignmentFileReaderI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/DatastoreRegistry.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/Datasetsequence.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/LocalDocSyncObject.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/Tree.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/Sequencefeature.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/Rangetype.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/Sequencemapping.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/DatastoreItem.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vamsas/Dbref.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/HTMLOutput.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/GffHelperI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/Gff2Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/GffConstants.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/ExonerateHelper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/SequenceOntologyFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/InterProScanHelper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/Gff3Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/SequenceOntologyI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/GffHelperBase.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/GffHelperFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/gff/SequenceOntologyLite.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vcf/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/vcf/VCFLoader.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/GenBankFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/FormatAdapter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/BackupFilenameParts.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/IntKeyStringValueEntry.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/SequenceAnnotationReport.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/JPredFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/PDBFeatureSettings.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/JalviewFileView.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/JalviewFileFilter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/BackupFilesPresetEntry.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/StructureFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/FastaFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/BackupFilenameFilter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/RnamlFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/PileUpfile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/FileFormatI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/PfamFile.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/ClustalFile.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/io/AMSAFile.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/bin/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/Dna.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/SeqsetUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/TreeBuilder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/AlignmentAnnotationUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/ConnectivityException.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/AlignmentUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/WUSSParseException.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/SimilarityScoreModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/FeatureDistanceModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/SmithWatermanModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/DistanceScoreModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/SecondaryStructureDistanceModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/PIDModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/ScoreMatrix.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/ScoreModels.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/scoremodels/SimilarityParams.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/ccAnalysis.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/CodingUtils.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/NJTree.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/PCA.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/Rna.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/GeneticCodes.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/Grouping.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/analysis/Connectivity.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/StructureMappingcommandSet.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/StructureCommandI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/AtomSpec.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/VamsasSource.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/VamsasListener.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/StructureCommandsBase.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/StructureMapping.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/SelectionListener.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structure/StructureImportSettings.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/TCoffeeColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/PurinePyrimidineColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/NucleotideColourScheme.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/BlossomColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/RNAHelicesColourChooser.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/NucleotideAmbiguityColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/Blosum62ColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/CovariationColourScheme.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/OceanColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/HydrophobicColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/ZappoColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/FlowerColourScheme.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/schemes/Consensus.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structures/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/jalview/structures/models/AAStructureBindingModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/darrylbu/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/metadata/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/metadata/IIOAttr.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/stream/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/stream/FileCacheImageOutputStream.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/stream/IIOByteBuffer.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/ImageTypeSpecifier.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/IIOImage.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/event/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/event/IIOWriteWarningListener.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/event/IIOReadUpdateListener.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/event/IIOReadProgressListener.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/ImageReader.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/ImageIO.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/IIOParamController.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/plugins/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/plugins/bmp/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/plugins/jpeg/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/plugins/jpeg/JPEGHuffmanTable.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/plugins/jpeg/JPEGQTable.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/plugins/jpeg/JPEGImageReadParam.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/plugins/jpeg/JPEGImageWriteParam.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/ImageTranscoder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/ImageReadParam.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/imageio/IIOParam.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonArray.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/stream/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/stream/JsonGenerator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/stream/JsonParser.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/stream/JsonParserFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/stream/JsonLocation.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/stream/JsonGeneratorFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/stream/JsonParsingException.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/stream/JsonGenerationException.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/spi/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/spi/JsonProvider.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonReaderFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonValue.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonArrayBuilder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonString.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonWriter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonBuilderFactory.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonNumber.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonWriterFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/Json.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonStructure.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonObject.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/json/JsonObjectBuilder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/PropertyKey.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/concurrent/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/concurrent/GuardedBy.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/concurrent/Immutable.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/concurrent/NotThreadSafe.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/concurrent/ThreadSafe.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/OverridingMethodsMustInvokeSuper.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/WillClose.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/CheckForNull.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/MatchesPattern.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/ParametersAreNonnullByDefault.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/Syntax.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/Nonnegative.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/WillCloseWhenClosed.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/CheckForSigned.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/meta/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/meta/TypeQualifierNickname.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/meta/Exhaustive.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/annotation/meta/TypeQualifierValidator.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/JComponent.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/border/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/event/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/table/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/JColorChooser.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/colorchooser/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/ScrollPaneConstants.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/plaf/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/plaf/basic/BasicBorders.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/plaf/ColorChooserUI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/plaf/ListUI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/plaf/DesktopIconUI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/plaf/ComponentUI.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/SpinnerNumberModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/JRadioButton.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/JTabbedPane.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/DefaultSingleSelectionModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/Action.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/SpinnerModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/Timer.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/KeyboardManager.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/Autoscroller.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/ColorChooserDialog.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/ToolTipManager.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/ProgressMonitor.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/AncestorNotifier.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/TimerQueue.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/DefaultButtonModel.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/JInternalFrame.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/SingleSelectionModel.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/swing/SizeSequence.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/net/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/_README.txt
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/sound/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/sound/sampled/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/sound/sampled/AudioInputStream.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/accessibility/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/print/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/stream/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/stream/events/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/stream/events/XMLEvent.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/stream/events/Comment.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/stream/XMLStreamReader.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/stream/util/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/stream/XMLStreamWriter.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/stream/EventFilter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/validation/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/validation/ValidatorHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/validation/SchemaFactory.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/validation/Schema.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/ValidationEvent.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/Marshaller.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlEnumValue.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlElementDecl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlSchema.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlList.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlElementWrapper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlAccessorOrder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlMimeType.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/W3CDomHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlNsForm.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlAttachmentRef.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlSchemaType.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlInlineBinaryData.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlTransient.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlEnum.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/adapters/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/adapters/HexBinaryAdapter.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/adapters/XmlAdapter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlElementRefs.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlAccessorType.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/ContextFinder.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/JAXBPermission.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/Validator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/SchemaOutputResolver.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/JAXBContextFactory.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/util/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/util/ValidationEventCollector.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/util/JAXBSource.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/bind/util/JAXBResult.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/datatype/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/datatype/XMLGregorianCalendar.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/datatype/Duration.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/parsers/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/parsers/DocumentBuilder.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/OutputKeys.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/ErrorListener.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/TransformerFactoryConfigurationError.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/stax/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/SourceLocator.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/Templates.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/sax/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/URIResolver.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/transform/dom/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/SAXNotRecognizedException.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/AttributeList.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/ext/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/ext/EntityResolver2.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/EntityResolver.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/DocumentHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/SAXNotSupportedException.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/Parser.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/ErrorHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/Attributes.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/HandlerBase.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/XMLFilterImpl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/AttributeListImpl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/XMLReaderFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/DefaultHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/LocatorImpl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/ParserAdapter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/NewInstance.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/AttributesImpl.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/NamespaceSupport.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/ParserFactory.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/helpers/XMLReaderAdapter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/demo/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/demo/EntityDemo.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/demo/DemoHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/demo/CharacterStreamDemo.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/demo/ByteStreamDemo.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/javax/xml/sax/SAXException.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/IMsaWS.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/SequenceSet.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/SeqSearchResult_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Object_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/MsaResult_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/MsaResult.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Msfalignment_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Sequence_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Secstructpred_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/JpredResult.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/WsJobId.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Object.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/WsJobId_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Result_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Secstructpred.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/SequenceSet_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Alignment_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/SeqSearchResult.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Sequence.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/JpredResult_Helper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Msfalignment.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Result.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/vamsas/objects/simple/Alignment.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/Grid.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/ConstraintParser.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/ResizeConstraint.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/AnimSpec.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/InCellGapProvider.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/LayoutCallback.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/CC.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/UnitConverter.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/LayoutUtil.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/LC.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/DimConstraint.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/PlatformDefaults.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/ContainerWrapper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/ComponentWrapper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/BoundSize.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/LinkHandler.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/UnitValue.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/layout/AC.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/swing/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/swing/SwingComponentWrapper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/swing/SwingContainerWrapper.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/swing/MigLayout.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/net/miginfocom/README_SWINGJS.txt
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/gov/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/templateEditor/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/applications/templateEditor/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/applications/NussinovDesignDemo.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/applications/fragseq/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/geom/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/templates/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/export/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/naView/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/rna/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/factories/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fr/orsay/lri/varna/interfaces/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/core/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/fts/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/unicode/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLParagraphElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLDListElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLIsIndexElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLSelectElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLTextAreaElement.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLParamElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLTitleElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLOptGroupElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLHeadingElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLAnchorElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLQuoteElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLTableCellElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLPreElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLFieldSetElement.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLMetaElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLAppletElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLBaseFontElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLMapElement.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLHRElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLTableSectionElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLFormElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLTableElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLFontElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLLegendElement.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLOptionElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLOListElement.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLDOMImplementation.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLButtonElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLScriptElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLLinkElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLIFrameElement.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLUListElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/html/HTMLLIElement.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/NodeList.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/ProcessingInstruction.js
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build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/NamedNodeMap.js
build	08-Dec-2024 00:07:28	jalview-js/swingjs/j2s/org/w3c/dom/traversal/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/viewer/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/dialog/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapesurface/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/jsv/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/quantum/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/awtsw/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shape/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/TestScriptOutput.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/Rockets.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/Ribbons.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/Trace.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/MeshRibbon.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/BioShapeCollection.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/Cartoon.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/Strands.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/Backbone.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/shapebio/BioShape.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/dssx/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/dssx/DSSP.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/dssx/DSSR0.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/dssx/Bridge.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/dssx/AnnotationParser.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/dssx/DSSR1.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/writers/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/writers/QCJSONWriter.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/AtomSetCollection.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/AtomIterator.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/Bond.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/XtalSymmetry.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/TestSmarterJmolAdapterImpl.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/AtomSetCollectionReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/StructureIterator.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/AtomSetObject.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/SmarterJmolAdapter.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/Atom.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/Structure.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/TestSmarterJmolAdapter.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/Resolver.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/BondIterator.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/smarter/MSInterface.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/Subsystem.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/MSCifParser.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/MMTFReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/MSRdr.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/MMCifReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/Cif2Reader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/CifReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/Cif2DataParser.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/cif/MMCifValidationParser.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pymol/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pymol/PyMOLGroup.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pymol/JmolObject.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pymol/PyMOLReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pymol/PickleReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pymol/PyMOLScene.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pymol/PyMOL.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/AlchemyReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/GhemicalMMReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/JmeReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/TinkerReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/HyperChemReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/MopacReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/MopacArchiveReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/InputReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/AmpacReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/CubeReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/FoldingXyzReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/FAHReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/simple/JSONReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/VaspPoscarReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/BilbaoReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/CgdReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/JanaReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/GulpReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/VaspChgcarReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/SiestaReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/MagresReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/DmolReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/CrystalReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/Wien2kReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/AimsReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/VaspOutcarReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/XcrysdenReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/AbinitReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/CastepReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/EspressoReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xtal/ShelxReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/QCJSONReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/GamessUSReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/PsiReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/MOReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/SlaterReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/MopacSlaterReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/GaussianReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/BasisFunctionReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/GenNBOReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/GaussianWfnReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/QchemReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/AdfReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/JaguarReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/NBOParser.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/MoldenReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/GaussianFchkReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/WebMOReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/GamessUKReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/DgridReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/MopacGraphfReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/NWChemReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/CsfReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/GamessReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/TlsDataOnlyReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/ForceFieldReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/Mol2Reader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/AFLOWReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/MdCrdReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/GromacsReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/MdTopReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/BinaryDcdReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/more/JcampdxReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pdb/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pdb/P2nReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pdb/JmolDataReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pdb/PqrReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/pdb/PdbReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlMolproReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlMagResReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlCmlReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlQEReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlHandler.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlOdysseyReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlChem3dReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlMOReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlArgusReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlVaspReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/xml/XmlXsdReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/molxyz/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/molxyz/MolReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/molxyz/V3000Rdr.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/molxyz/XyzReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/molxyz/Mol3DReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/spartan/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/spartan/SpartanReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/spartan/OdysseyReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/spartan/SpartanArchive.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/spartan/SpartanSmolReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/spartan/SpartanInputReader.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/adapter/readers/spartan/SpartanUtil.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/MinAtom.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/validate/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/validate/MMFF94_hypervalent.mol2
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/validate/mmff-validation-energy.dat
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/validate/MMFF94SYMB.PAR
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/validate/jmol-validation.txt
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/validate/checkmm.spt
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/validate/MMFF94_dative.mol2
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/mmff/validate/mmff-validation.dat
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/FFParam.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/UFFAngleCalc.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/AtomType.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/MMFFVDWCalc.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/UFFDistanceCalc.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/Calculations.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/data/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/data/UFF.txt
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/data/mmff94.par.txt
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/data/MMFF94-smarts.txt
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/ForceFieldUFF.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/jmol/minimize/forcefield/MMFFDistanceCalc.js
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/openscience/jmol/app/janocchio/Measure.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/openscience/jmol/app/janocchio/LoadMeasureThreadJSON.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/openscience/jmol/app/janocchio/NamfisReader.js
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/openscience/jmol/app/janocchio/NMR_JmolPanel.js
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/openscience/jmol/app/plugins/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/glassfish/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/org/stackoverflowusers/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/_README.txt
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/img/
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build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/img/PpmEncoder.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/img/Huffman.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/img/PdfEncoder.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/img/JpgEncoder.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/img/CRCEncoder.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/img/ImageEncoder.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/javajs/img/Jpg64Encoder.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_logo-38.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/UoD_banner-30.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_logo-16.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_logo-128.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/barton_group-28.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_logo-512.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/barton_group-32.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/UoD_banner-32.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_logo-48.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/UoD_banner-28.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/barton_group-30.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_banner.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_logo-32.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_logo-64.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/rotatable_jalview_logo-38.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/default_images/jalview_logo-256.png
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/authors.props
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/WSWUBlastService.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/WSWUBlast.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/picr/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/picr/AccessionMappingService/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/WSFile.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/WSWUBlastSoapBindingStub.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/WSWUBlastServiceLocator.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/InputParams.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/www/Data.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/picr/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/picr/model/
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/picr/model/UPEntry.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/picr/model/CrossReference.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/picr/model/UPEntry_Helper.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/uk/ac/ebi/picr/model/CrossReference_Helper.js
build	08-Dec-2024 00:07:29	jalview-js/swingjs/j2s/.build_properties
build	08-Dec-2024 00:07:29	jalview-js/swingjs/JalviewApplet.js
build	08-Dec-2024 00:07:29	jalview-js/jalview_bin_JalviewLite_applet.html
build	08-Dec-2024 00:07:29	jalview-js/jalview_bin_GetdownLauncherUpdate.html
build	08-Dec-2024 00:07:29	jalview-js/applets.html
build	08-Dec-2024 00:07:29	jalview-js/fr_orsay_lri_varna_models_templates_BatchBenchmarkPrepare.html
build	08-Dec-2024 00:07:29	jalview-js/fr_orsay_lri_varna_applications_newGUI_VARNAGUI.html
build	08-Dec-2024 00:07:29	jalview-js/images/
build	08-Dec-2024 00:07:29	jalview-js/images/coolJalviewBackgroundFading.png
build	08-Dec-2024 00:07:29	jalview-js/images/coolVeryLightBG.png
build	08-Dec-2024 00:07:29	jalview-js/examples/
build	08-Dec-2024 00:07:29	jalview-js/examples/PF00111_seed.stk
build	08-Dec-2024 00:07:29	jalview-js/examples/backupfilestest.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/dna_interleaved.phy
build	08-Dec-2024 00:07:29	jalview-js/examples/RF00031_folded.stk
build	08-Dec-2024 00:07:29	jalview-js/examples/jpred_msa.seq.concise
build	08-Dec-2024 00:07:29	jalview-js/examples/uniref50.score_ascii
build	08-Dec-2024 00:07:29	jalview-js/examples/exampleFeatures.txt
build	08-Dec-2024 00:07:29	jalview-js/examples/1gaq.txt
build	08-Dec-2024 00:07:29	jalview-js/examples/plantfdx.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/3W5V.pdb
build	08-Dec-2024 00:07:29	jalview-js/examples/estrogenReceptorProtein.aln
build	08-Dec-2024 00:07:29	jalview-js/examples/plantfdx.features
build	08-Dec-2024 00:07:29	jalview-js/examples/estrogenReceptorCdna.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/estrogenReceptorCdna_aln.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/plantfdx.annotations
build	08-Dec-2024 00:07:29	jalview-js/examples/estrogenReceptorCdna_frag.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/estrogenReceptorProtein_frag.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/unfolded_RF00031.aln
build	08-Dec-2024 00:07:29	jalview-js/examples/estrogenReceptorProtein.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/estrogenReceptorProtein_aln.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/jaxbtest.jvx
build	08-Dec-2024 00:07:29	jalview-js/examples/rna_ss_test.stk
build	08-Dec-2024 00:07:29	jalview-js/examples/uniref50.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/2GIS.pdb
build	08-Dec-2024 00:07:29	jalview-js/examples/uniref50_mz.fa
build	08-Dec-2024 00:07:29	jalview-js/examples/example.json
build	08-Dec-2024 00:07:29	jalview-js/examples/jpred_msa.fasta
build	08-Dec-2024 00:07:29	jalview-js/examples/biojsonschema.json
build	08-Dec-2024 00:07:29	jalview-js/examples/ferredoxin.nw
build	08-Dec-2024 00:07:29	jalview-js/examples/exampleFile_2_7.jvp
build	08-Dec-2024 00:07:29	jalview-js/examples/dna_sequential.phy
build	08-Dec-2024 00:07:29	jalview-js/JalviewJS__jalview.html
build	08-Dec-2024 00:07:29	jalview-js/fr_orsay_lri_varna_applications_fragseq_FragSeqGUI.html
build	08-Dec-2024 00:07:29	jalview-js/jalview_embedded_example1.html
simple	08-Dec-2024 00:07:29	Finished task 'create tar of JalviewJS site' with result: Success
simple	08-Dec-2024 00:07:29	Running post build plugin 'NCover Results Collector'
simple	08-Dec-2024 00:07:29	Running post build plugin 'Artifact Copier'
simple	08-Dec-2024 00:07:29	Publishing an artifact: getdown_test-release_channel_tar
simple	08-Dec-2024 00:07:30	Finished publishing of artifact Shared artifact: [getdown_test-release_channel_tar], pattern: [**/getdown_*_website.tgz] anchored at: [build/website/docroot/getdown] in 285.8 ms
simple	08-Dec-2024 00:07:30	Publishing an artifact: test-release_channel_executable_jar
simple	08-Dec-2024 00:07:30	Finished publishing of artifact Shared artifact: [test-release_channel_executable_jar], pattern: [*_executable_jar.tgz] anchored at: [build] in 189.1 ms
simple	08-Dec-2024 00:07:30	Publishing an artifact: test-release_jalview-js-site_tar
simple	08-Dec-2024 00:07:30	Finished publishing of artifact Shared artifact: [test-release_jalview-js-site_tar], pattern: [*_jalview-js.tar.gz] anchored at: [build] in 107.2 ms
simple	08-Dec-2024 00:07:30	Running post build plugin 'Artifactory Release Management Staging'
simple	08-Dec-2024 00:07:30	Running post build plugin 'Artifactory Build Info Copier'
simple	08-Dec-2024 00:07:30	Running post build plugin 'Artifactory Gradle Properties Info Copier'
simple	08-Dec-2024 00:07:30	Running post build plugin 'npm Cache Cleanup'
simple	08-Dec-2024 00:07:30	Running post build plugin 'Clover Results Collector'
simple	08-Dec-2024 00:07:30	Running post build plugin 'Docker Container Cleanup'
simple	08-Dec-2024 00:07:30	Finalising the build...
simple	08-Dec-2024 00:07:30	Stopping timer.
simple	08-Dec-2024 00:07:30	Build JB-GTC0-JOB1-32 completed.
simple	08-Dec-2024 00:07:30	Running on server: post build plugin 'NCover Results Collector'
simple	08-Dec-2024 00:07:30	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	08-Dec-2024 00:07:30	Running on server: post build plugin 'Clover Delta Calculator'
simple	08-Dec-2024 00:07:30	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	08-Dec-2024 00:07:30	All post build plugins have finished
simple	08-Dec-2024 00:07:30	Generating build results summary...
simple	08-Dec-2024 00:07:30	Saving build results to disk...
simple	08-Dec-2024 00:07:30	Logging substituted variables...
simple	08-Dec-2024 00:07:30	Indexing build results...
simple	08-Dec-2024 00:07:30	Finished building JB-GTC0-JOB1-32.