simple 07-Feb-2025 00:00:10 Build Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #17 (JB-GTC-JOB1-17) started building on agent Default Agent
simple 07-Feb-2025 00:00:10
simple 07-Feb-2025 00:00:10 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
simple 07-Feb-2025 00:00:10 Cleaning directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
simple 07-Feb-2025 00:00:15 Executing build Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #17 (JB-GTC-JOB1-17)
simple 07-Feb-2025 00:00:15 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple 07-Feb-2025 00:00:15 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
simple 07-Feb-2025 00:00:15 Updating source code to revision: a07a210e39b574048817742f680ad4bbcebb590c
simple 07-Feb-2025 00:00:15 Fetching 'refs/heads/main' from 'https://gitlab.jalview.org/jalview/jalview.git'.
simple 07-Feb-2025 00:00:16 From https://gitlab.jalview.org/jalview/jalview
simple 07-Feb-2025 00:00:16 * [new branch] main -> main
simple 07-Feb-2025 00:00:16 Checking out revision a07a210e39b574048817742f680ad4bbcebb590c.
simple 07-Feb-2025 00:00:16 Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/.git'.
simple 07-Feb-2025 00:00:16 Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1'...
simple 07-Feb-2025 00:00:16 done.
simple 07-Feb-2025 00:00:20 Branch main set up to track remote branch main from origin.
simple 07-Feb-2025 00:00:20 Switched to a new branch 'main'
simple 07-Feb-2025 00:00:20 Updated source code to revision: a07a210e39b574048817742f680ad4bbcebb590c
simple 07-Feb-2025 00:00:20 Finished task 'Checkout Default Repository' with result: Success
simple 07-Feb-2025 00:00:20 Running pre-build action: VCS Version Collector
simple 07-Feb-2025 00:00:20 Running pre-build action: Artifactory Release Staging
command 07-Feb-2025 00:00:20 Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
command 07-Feb-2025 00:00:20 Substituting variable: ${bamboo.planKey} with JB-GTC
simple 07-Feb-2025 00:00:20 Starting task 'Jalview ${bamboo.CHANNEL} distribution for Java 11' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple 07-Feb-2025 00:00:20 Bamboo Artifactory Plugin version: 2.6.2
command 07-Feb-2025 00:00:20 Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #17 (JB-GTC-JOB1-17)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC clean getdown shadowJar\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=main\nbamboo_repository_46498241_branch_name=main\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=main\nbamboo_repository_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_repository_46498241_name=Jalview Gitlab\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GTC-JOB1\nbamboo_shortPlanName=Getdown TEST_RELEASE Channel\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=17\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_repository_46498241_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel\nbamboo_shortPlanKey=GTC\nbamboo_repository_46498241_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_buildTimeStamp=2025-02-07T00:00:10.226Z\nbamboo_repository_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_repository_46498241_git_branch=main\nbamboo_repository_git_branch=main\nbamboo_buildResultKey=JB-GTC-JOB1-17\nbamboo_repository_branch_name=main\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=a07a210e39b574048817742f680ad4bbcebb590c\nSHLVL=1\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=main\nbamboo_repository_46498241_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_branchDisplayName=main\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=main\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_46498241_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301535\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planKey=JB-GTC\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=main\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build 07-Feb-2025 00:00:21 Starting a Gradle Daemon (subsequent builds will be faster)
build 07-Feb-2025 00:00:36
build 07-Feb-2025 00:00:36 > Configure project :
build 07-Feb-2025 00:00:36 Using properties from file './utils/channels/test-release/channel_gradle.properties'
build 07-Feb-2025 00:00:36 JALVIEW_VERSION is set to '2.11.4.1'
build 07-Feb-2025 00:00:36 HEADLESS BUILD
build 07-Feb-2025 00:00:36 J2S ENABLED
build 07-Feb-2025 00:00:36 Setting jalviewjs_ignore_transpile_errors to 'false'
build 07-Feb-2025 00:00:36 Using a TEST-RELEASE profile.
build 07-Feb-2025 00:00:37 eclipseDir exists
build 07-Feb-2025 00:00:38
build 07-Feb-2025 00:00:38 > Task :clean
build 07-Feb-2025 00:00:38 > Task :cleanPackageDir UP-TO-DATE
build 07-Feb-2025 00:00:38 > Task :getdownImagesCopy
build 07-Feb-2025 00:00:38 > Task :getdownImagesProcess
build 07-Feb-2025 00:00:38 > Task :getdownImages
build 07-Feb-2025 00:00:39 > Task :copyHelp
build 07-Feb-2025 00:00:41 > Task :buildIndices
build 07-Feb-2025 00:00:41 > Task :copyResources
build 07-Feb-2025 00:00:41 > Task :copyChannelResources
build 07-Feb-2025 00:00:41
build 07-Feb-2025 00:00:41 > Task :createBuildProperties
build 07-Feb-2025 00:00:41 Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:00:41 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:00:41
build 07-Feb-2025 00:00:41 > Task :buildResources
build 07-Feb-2025 00:00:41 > Task :copyDocs
build 07-Feb-2025 00:00:42
build 07-Feb-2025 00:00:42 > Task :convertMdFiles
build 07-Feb-2025 00:00:42 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
build 07-Feb-2025 00:00:42 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/releaseprocess.html
build 07-Feb-2025 00:00:42 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
build 07-Feb-2025 00:00:42 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/building.html
build 07-Feb-2025 00:00:42 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/jalview-projects.html
build 07-Feb-2025 00:00:43
build 07-Feb-2025 00:00:43 > Task :releasesTemplates
build 07-Feb-2025 00:00:43 Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:00:43 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:00:43 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:00:43 Stripping rc/test/etc for 2_11_4_1-test
build 07-Feb-2025 00:00:43 Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/help/markdown/whatsnew/whatsnew-2_11_4_1.md
build 07-Feb-2025 00:00:43
build 07-Feb-2025 00:00:43 > Task :prepare
build 07-Feb-2025 00:00:46
build 07-Feb-2025 00:00:46 > Task :compileJava
build 07-Feb-2025 00:00:46 Setting target compatibility to 11
error 07-Feb-2025 00:01:00 Note: Some input files use or override a deprecated API.
error 07-Feb-2025 00:01:00 Note: Recompile with -Xlint:deprecation for details.
error 07-Feb-2025 00:01:00 Note: Some input files use unchecked or unsafe operations.
error 07-Feb-2025 00:01:00 Note: Recompile with -Xlint:unchecked for details.
build 07-Feb-2025 00:01:04
build 07-Feb-2025 00:01:04 > Task :processResources
build 07-Feb-2025 00:01:04 Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:01:04 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:04 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:04 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:04 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:04 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:04 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:04 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:04
build 07-Feb-2025 00:01:04 > Task :classes
build 07-Feb-2025 00:01:06
build 07-Feb-2025 00:01:06 > Task :compileLinkCheck
build 07-Feb-2025 00:01:06 Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:01:06 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:06 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:06 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':getdownImagesCopy' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:08
build 07-Feb-2025 00:01:08 > Task :linkCheck
build 07-Feb-2025 00:01:08 Checking help file links
build 07-Feb-2025 00:01:08
build 07-Feb-2025 00:01:08 Results:
build 07-Feb-2025 00:01:08 159 distinct help targets
build 07-Feb-2025 00:01:08 159 help mappings
build 07-Feb-2025 00:01:08 0 invalid targets
build 07-Feb-2025 00:01:08 32 unused targets
build 07-Feb-2025 00:01:08 uniprotfetcher: html/features/uniprotsequencefetcher.html
build 07-Feb-2025 00:01:08 overviewprefs: html/features/preferences.html#overview
build 07-Feb-2025 00:01:08 cdnafeatures: html/features/codingfeatures.html
build 07-Feb-2025 00:01:08 startupprefs: html/features/preferences.html#startup
build 07-Feb-2025 00:01:08 ensemblfetch: html/features/ensemblsequencefetcher.html
build 07-Feb-2025 00:01:08 io.modellerpir: html/io/modellerpir.html
build 07-Feb-2025 00:01:08 structureandpaefromfile: html/features/structurechooser.html#loadfromfile
build 07-Feb-2025 00:01:08 pdbmcviewer: html/features/pdbviewer.html
build 07-Feb-2025 00:01:08 workingwithpae: html/features/paematrices.html
build 07-Feb-2025 00:01:08 groovy.colours: html/features/groovy.html#groovyColours
build 07-Feb-2025 00:01:08 seqmappings: html/features/seqmappings.html
build 07-Feb-2025 00:01:08 uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts
build 07-Feb-2025 00:01:08 splitframe.mirrorfonts: html/features/splitView.html#mirror
build 07-Feb-2025 00:01:08 subtMatrices.pam250: html/calculations/scorematrices.html#pam250
build 07-Feb-2025 00:01:08 search: html/features/search.html
build 07-Feb-2025 00:01:08 viewingpdbs.reps: html/features/viewingpdbs.html#viewreps
build 07-Feb-2025 00:01:08 alformats: html/io/fileformats.html
build 07-Feb-2025 00:01:08 strucprefs: html/features/preferences.html#structure
build 07-Feb-2025 00:01:08 siftsmapping: html/features/siftsmapping.html
build 07-Feb-2025 00:01:08 chimera.annotxfer: html/features/chimera.html#annotxfer
build 07-Feb-2025 00:01:08 pdbfts: html/features/pdbsequencefetcher.html#pdbfts
build 07-Feb-2025 00:01:08 newkeys: html/features/newkeystrokes.html
build 07-Feb-2025 00:01:08 importvcf.attribs: html/features/importvcf.html#attribs
build 07-Feb-2025 00:01:08 seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature
build 07-Feb-2025 00:01:08 structuresvia3dbeacons: html/features/structurechooser.html#3dbeaconssearch
build 07-Feb-2025 00:01:08 jalarchive: html/features/jalarchive.html
build 07-Feb-2025 00:01:08 newsreader: html/webServices/newsreader.html
build 07-Feb-2025 00:01:08 jalviewcltool: html/features/commandline.html#script
build 07-Feb-2025 00:01:08 popMenuAddref: html/menus/popupMenu.html#addrefannot
build 07-Feb-2025 00:01:08 splitframe.virtualfeats: html/features/splitView.html#virtualfeats
build 07-Feb-2025 00:01:08 paematrixformat: html/io/paematrixformat.html
build 07-Feb-2025 00:01:08 overview: html/features/overview.html
build 07-Feb-2025 00:01:08 0 invalid map urls
build 07-Feb-2025 00:01:08 0 invalid image attributes
build 07-Feb-2025 00:01:08 508 internal href links (110 with anchors)
build 07-Feb-2025 00:01:08 0 invalid internal href links
build 07-Feb-2025 00:01:08 0 invalid internal anchor links
build 07-Feb-2025 00:01:08 113 external href links
build 07-Feb-2025 00:01:08 External links not verified as internet not available
build 07-Feb-2025 00:01:08 *** Success ***
build 07-Feb-2025 00:01:09
build 07-Feb-2025 00:01:09 > Task :jar
build 07-Feb-2025 00:01:09 > Task :syncJars
build 07-Feb-2025 00:01:09 > Task :makeDist
build 07-Feb-2025 00:01:09 > Task :getdownWebsiteBuild
build 07-Feb-2025 00:01:11
build 07-Feb-2025 00:01:11 > Task :getdownDigest
build 07-Feb-2025 00:01:11 Generating digest file './build/website/docroot/getdown/test-release/11/digest.txt'...
build 07-Feb-2025 00:01:11 Generating digest file './build/website/docroot/getdown/test-release/11/digest2.txt'...
build 07-Feb-2025 00:01:11
build 07-Feb-2025 00:01:11 > Task :getdown
build 07-Feb-2025 00:01:11 LIKELY RSYNC COMMAND:
build 07-Feb-2025 00:01:11 mkdir -p '/Volumes/jalview/docroot/getdown/test-release/11/'
build 07-Feb-2025 00:01:11 rsync -avh --delete './build/website/docroot/getdown/test-release/11/' '/Volumes/jalview/docroot/getdown/test-release/11/'
error 07-Feb-2025 00:01:11 2025/02/07 00:01:10:187 WARNING Starting without install4j classes
error 07-Feb-2025 00:01:11 2025/02/07 00:01:10:723 WARNING Starting without install4j classes
build 07-Feb-2025 00:01:20
build 07-Feb-2025 00:01:20 > Task :shadowJar
build 07-Feb-2025 00:01:20
build 07-Feb-2025 00:01:20 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build 07-Feb-2025 00:01:20
build 07-Feb-2025 00:01:20 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build 07-Feb-2025 00:01:20
build 07-Feb-2025 00:01:20 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build 07-Feb-2025 00:01:20
build 07-Feb-2025 00:01:20 Execution optimizations have been disabled for 4 invalid unit(s) of work during this build to ensure correctness.
build 07-Feb-2025 00:01:20 Please consult deprecation warnings for more details.
build 07-Feb-2025 00:01:20
build 07-Feb-2025 00:01:20 BUILD SUCCESSFUL in 59s
build 07-Feb-2025 00:01:20 22 actionable tasks: 21 executed, 1 up-to-date
simple 07-Feb-2025 00:01:21 Finished task 'Jalview ${bamboo.CHANNEL} distribution for Java 11' with result: Success
command 07-Feb-2025 00:01:21 Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
command 07-Feb-2025 00:01:21 Substituting variable: ${bamboo.planKey} with JB-GTC
simple 07-Feb-2025 00:01:21 Starting task 'Jalview 1.8 build' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple 07-Feb-2025 00:01:21 Bamboo Artifactory Plugin version: 2.6.2
command 07-Feb-2025 00:01:21 Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #17 (JB-GTC-JOB1-17)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC getdown shadowJar\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=main\nbamboo_repository_46498241_branch_name=main\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=main\nbamboo_repository_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_repository_46498241_name=Jalview Gitlab\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GTC-JOB1\nbamboo_shortPlanName=Getdown TEST_RELEASE Channel\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=17\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_repository_46498241_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel\nbamboo_shortPlanKey=GTC\nbamboo_repository_46498241_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_buildTimeStamp=2025-02-07T00:00:10.226Z\nbamboo_repository_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_repository_46498241_git_branch=main\nbamboo_repository_git_branch=main\nbamboo_buildResultKey=JB-GTC-JOB1-17\nbamboo_repository_branch_name=main\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=a07a210e39b574048817742f680ad4bbcebb590c\nSHLVL=1\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC clean getdown shadowJar\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=main\nbamboo_repository_46498241_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_branchDisplayName=main\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=main\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_46498241_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301535\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planKey=JB-GTC\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=main\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build 07-Feb-2025 00:01:22
build 07-Feb-2025 00:01:22 > Configure project :
build 07-Feb-2025 00:01:22 Using properties from file './utils/channels/test-release/channel_gradle.properties'
build 07-Feb-2025 00:01:22 JALVIEW_VERSION is set to '2.11.4.1'
build 07-Feb-2025 00:01:22 HEADLESS BUILD
build 07-Feb-2025 00:01:22 J2S ENABLED
build 07-Feb-2025 00:01:22 Setting jalviewjs_ignore_transpile_errors to 'false'
build 07-Feb-2025 00:01:22 Using a TEST-RELEASE profile.
build 07-Feb-2025 00:01:22 eclipseDir exists
build 07-Feb-2025 00:01:22
build 07-Feb-2025 00:01:22 > Task :getdownImagesCopy
build 07-Feb-2025 00:01:22 > Task :getdownImagesProcess
build 07-Feb-2025 00:01:22 > Task :getdownImages
build 07-Feb-2025 00:01:22 > Task :cleanPackageDir
build 07-Feb-2025 00:01:22 > Task :copyHelp UP-TO-DATE
build 07-Feb-2025 00:01:23 > Task :buildIndices
build 07-Feb-2025 00:01:23 > Task :copyResources UP-TO-DATE
build 07-Feb-2025 00:01:23 > Task :copyChannelResources UP-TO-DATE
build 07-Feb-2025 00:01:23
build 07-Feb-2025 00:01:23 > Task :createBuildProperties
build 07-Feb-2025 00:01:23 Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:01:23 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:23
build 07-Feb-2025 00:01:23 > Task :buildResources
build 07-Feb-2025 00:01:23 > Task :copyDocs
build 07-Feb-2025 00:01:23
build 07-Feb-2025 00:01:23 > Task :convertMdFiles
build 07-Feb-2025 00:01:23 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
build 07-Feb-2025 00:01:23 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/releaseprocess.html
build 07-Feb-2025 00:01:23 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
build 07-Feb-2025 00:01:23 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/building.html
build 07-Feb-2025 00:01:23 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/jalview-projects.html
build 07-Feb-2025 00:01:24
build 07-Feb-2025 00:01:24 > Task :releasesTemplates
build 07-Feb-2025 00:01:24 Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:01:24 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:24 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:24 Stripping rc/test/etc for 2_11_4_1-test
build 07-Feb-2025 00:01:24 Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/help/markdown/whatsnew/whatsnew-2_11_4_1.md
build 07-Feb-2025 00:01:24
build 07-Feb-2025 00:01:24 > Task :prepare
build 07-Feb-2025 00:01:26
build 07-Feb-2025 00:01:26 > Task :compileJava
build 07-Feb-2025 00:01:26 Setting target compatibility to 1.8
error 07-Feb-2025 00:01:34 Note: Some input files use or override a deprecated API.
error 07-Feb-2025 00:01:34 Note: Recompile with -Xlint:deprecation for details.
error 07-Feb-2025 00:01:34 Note: Some input files use unchecked or unsafe operations.
error 07-Feb-2025 00:01:34 Note: Recompile with -Xlint:unchecked for details.
build 07-Feb-2025 00:01:36
build 07-Feb-2025 00:01:36 > Task :processResources
build 07-Feb-2025 00:01:36 Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:01:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:36
build 07-Feb-2025 00:01:36 > Task :classes
build 07-Feb-2025 00:01:38
build 07-Feb-2025 00:01:38 > Task :compileLinkCheck
build 07-Feb-2025 00:01:38 Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:01:38 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:38 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:38 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':getdownImagesCopy' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:01:38
build 07-Feb-2025 00:01:38 > Task :linkCheck
build 07-Feb-2025 00:01:38 Checking help file links
build 07-Feb-2025 00:01:38
build 07-Feb-2025 00:01:38 Results:
build 07-Feb-2025 00:01:38 159 distinct help targets
build 07-Feb-2025 00:01:38 159 help mappings
build 07-Feb-2025 00:01:38 0 invalid targets
build 07-Feb-2025 00:01:38 32 unused targets
build 07-Feb-2025 00:01:38 uniprotfetcher: html/features/uniprotsequencefetcher.html
build 07-Feb-2025 00:01:38 overviewprefs: html/features/preferences.html#overview
build 07-Feb-2025 00:01:38 cdnafeatures: html/features/codingfeatures.html
build 07-Feb-2025 00:01:38 startupprefs: html/features/preferences.html#startup
build 07-Feb-2025 00:01:38 ensemblfetch: html/features/ensemblsequencefetcher.html
build 07-Feb-2025 00:01:38 io.modellerpir: html/io/modellerpir.html
build 07-Feb-2025 00:01:38 structureandpaefromfile: html/features/structurechooser.html#loadfromfile
build 07-Feb-2025 00:01:38 pdbmcviewer: html/features/pdbviewer.html
build 07-Feb-2025 00:01:38 workingwithpae: html/features/paematrices.html
build 07-Feb-2025 00:01:38 groovy.colours: html/features/groovy.html#groovyColours
build 07-Feb-2025 00:01:38 seqmappings: html/features/seqmappings.html
build 07-Feb-2025 00:01:38 uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts
build 07-Feb-2025 00:01:38 splitframe.mirrorfonts: html/features/splitView.html#mirror
build 07-Feb-2025 00:01:38 subtMatrices.pam250: html/calculations/scorematrices.html#pam250
build 07-Feb-2025 00:01:38 search: html/features/search.html
build 07-Feb-2025 00:01:38 viewingpdbs.reps: html/features/viewingpdbs.html#viewreps
build 07-Feb-2025 00:01:38 alformats: html/io/fileformats.html
build 07-Feb-2025 00:01:38 strucprefs: html/features/preferences.html#structure
build 07-Feb-2025 00:01:38 siftsmapping: html/features/siftsmapping.html
build 07-Feb-2025 00:01:38 chimera.annotxfer: html/features/chimera.html#annotxfer
build 07-Feb-2025 00:01:38 pdbfts: html/features/pdbsequencefetcher.html#pdbfts
build 07-Feb-2025 00:01:38 newkeys: html/features/newkeystrokes.html
build 07-Feb-2025 00:01:38 importvcf.attribs: html/features/importvcf.html#attribs
build 07-Feb-2025 00:01:38 seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature
build 07-Feb-2025 00:01:38 structuresvia3dbeacons: html/features/structurechooser.html#3dbeaconssearch
build 07-Feb-2025 00:01:38 jalarchive: html/features/jalarchive.html
build 07-Feb-2025 00:01:38 newsreader: html/webServices/newsreader.html
build 07-Feb-2025 00:01:38 jalviewcltool: html/features/commandline.html#script
build 07-Feb-2025 00:01:38 popMenuAddref: html/menus/popupMenu.html#addrefannot
build 07-Feb-2025 00:01:38 splitframe.virtualfeats: html/features/splitView.html#virtualfeats
build 07-Feb-2025 00:01:38 paematrixformat: html/io/paematrixformat.html
build 07-Feb-2025 00:01:38 overview: html/features/overview.html
build 07-Feb-2025 00:01:38 0 invalid map urls
build 07-Feb-2025 00:01:38 0 invalid image attributes
build 07-Feb-2025 00:01:38 508 internal href links (110 with anchors)
build 07-Feb-2025 00:01:38 0 invalid internal href links
build 07-Feb-2025 00:01:38 0 invalid internal anchor links
build 07-Feb-2025 00:01:38 113 external href links
build 07-Feb-2025 00:01:38 External links not verified as internet not available
build 07-Feb-2025 00:01:38 *** Success ***
build 07-Feb-2025 00:01:39
build 07-Feb-2025 00:01:39 > Task :jar
build 07-Feb-2025 00:01:39 > Task :syncJars
build 07-Feb-2025 00:01:39 > Task :makeDist
build 07-Feb-2025 00:01:40 > Task :getdownWebsiteBuild
error 07-Feb-2025 00:01:41 2025/02/07 00:01:40:155 WARNING Starting without install4j classes
error 07-Feb-2025 00:01:41 2025/02/07 00:01:40:647 WARNING Starting without install4j classes
build 07-Feb-2025 00:01:41
build 07-Feb-2025 00:01:41 > Task :getdownDigest
build 07-Feb-2025 00:01:41 Generating digest file './build/website/docroot/getdown/test-release/1.8/digest.txt'...
build 07-Feb-2025 00:01:41 Generating digest file './build/website/docroot/getdown/test-release/1.8/digest2.txt'...
build 07-Feb-2025 00:01:41
build 07-Feb-2025 00:01:41 > Task :getdown
build 07-Feb-2025 00:01:41 LIKELY RSYNC COMMAND:
build 07-Feb-2025 00:01:41 mkdir -p '/Volumes/jalview/docroot/getdown/test-release/1.8/'
build 07-Feb-2025 00:01:41 rsync -avh --delete './build/website/docroot/getdown/test-release/1.8/' '/Volumes/jalview/docroot/getdown/test-release/1.8/'
build 07-Feb-2025 00:01:48
build 07-Feb-2025 00:01:48 > Task :shadowJar
build 07-Feb-2025 00:01:48
build 07-Feb-2025 00:01:48 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build 07-Feb-2025 00:01:48
build 07-Feb-2025 00:01:48 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build 07-Feb-2025 00:01:48
build 07-Feb-2025 00:01:48 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build 07-Feb-2025 00:01:48
build 07-Feb-2025 00:01:48 Execution optimizations have been disabled for 4 invalid unit(s) of work during this build to ensure correctness.
build 07-Feb-2025 00:01:48 Please consult deprecation warnings for more details.
build 07-Feb-2025 00:01:48
build 07-Feb-2025 00:01:48 BUILD SUCCESSFUL in 27s
build 07-Feb-2025 00:01:48 21 actionable tasks: 18 executed, 3 up-to-date
simple 07-Feb-2025 00:01:48 Finished task 'Jalview 1.8 build' with result: Success
command 07-Feb-2025 00:01:48 Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
command 07-Feb-2025 00:01:48 Substituting variable: ${bamboo.planKey} with JB-GTC
simple 07-Feb-2025 00:01:48 Starting task 'JalviewJS ${bamboo.CHANNEL} release' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple 07-Feb-2025 00:01:48 Bamboo Artifactory Plugin version: 2.6.2
command 07-Feb-2025 00:01:48 Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #17 (JB-GTC-JOB1-17)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC --info eclipse jalviewjsCreateJ2sSettings jalviewjs\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=main\nbamboo_repository_46498241_branch_name=main\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=main\nbamboo_repository_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_repository_46498241_name=Jalview Gitlab\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GTC-JOB1\nbamboo_shortPlanName=Getdown TEST_RELEASE Channel\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=17\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_repository_46498241_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel\nbamboo_shortPlanKey=GTC\nbamboo_repository_46498241_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_buildTimeStamp=2025-02-07T00:00:10.226Z\nbamboo_repository_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_repository_46498241_git_branch=main\nbamboo_repository_git_branch=main\nbamboo_buildResultKey=JB-GTC-JOB1-17\nbamboo_repository_branch_name=main\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=a07a210e39b574048817742f680ad4bbcebb590c\nSHLVL=1\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC clean getdown shadowJar\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=main\nbamboo_repository_46498241_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_branchDisplayName=main\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=main\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_46498241_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301535\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planKey=JB-GTC\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_8=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC getdown shadowJar\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=main\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build 07-Feb-2025 00:01:49 Initialized native services in: /srv/bamboo/home/bamboo/.gradle/native
build 07-Feb-2025 00:01:49 Initialized jansi services in: /srv/bamboo/home/bamboo/.gradle/native
build 07-Feb-2025 00:01:49 The client will now receive all logging from the daemon (pid: 30686). The daemon log file: /srv/bamboo/home/bamboo/.gradle/daemon/7.4.2/daemon-30686.out.log
build 07-Feb-2025 00:01:49 Starting 3rd build in daemon [uptime: 1 mins 24.188 secs, performance: 98%, non-heap usage: 34% of 256 MiB]
build 07-Feb-2025 00:01:49 Using 4 worker leases.
build 07-Feb-2025 00:01:49 Watching the file system is configured to be enabled if available
build 07-Feb-2025 00:01:49 File system watching is inactive
build 07-Feb-2025 00:01:49 Starting Build
build 07-Feb-2025 00:01:49 Settings evaluated using settings file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/settings.gradle'.
build 07-Feb-2025 00:01:49 Projects loaded. Root project using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build.gradle'.
build 07-Feb-2025 00:01:49 Included projects: [root project 'jalview']
build 07-Feb-2025 00:01:49
build 07-Feb-2025 00:01:49 > Configure project :
build 07-Feb-2025 00:01:49 Evaluating root project 'jalview' using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build.gradle'.
build 07-Feb-2025 00:01:49 Using properties from file './utils/channels/test-release/channel_gradle.properties'
build 07-Feb-2025 00:01:49 JALVIEW_VERSION is set to '2.11.4.1'
build 07-Feb-2025 00:01:49 HEADLESS BUILD
build 07-Feb-2025 00:01:49 J2S ENABLED
build 07-Feb-2025 00:01:49 Setting jalviewjs_ignore_transpile_errors to 'false'
build 07-Feb-2025 00:01:49 Using a TEST-RELEASE profile.
build 07-Feb-2025 00:01:49 file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/main/java', not found
build 07-Feb-2025 00:01:49 eclipseDir exists
build 07-Feb-2025 00:01:49 All projects evaluated.
build 07-Feb-2025 00:01:49 Selected primary task 'eclipse' from project :
build 07-Feb-2025 00:01:49 Selected primary task 'jalviewjsCreateJ2sSettings' from project :
build 07-Feb-2025 00:01:49 Selected primary task 'jalviewjs' from project :
build 07-Feb-2025 00:01:49 Tasks to be executed: [task ':eclipseClasspath', task ':eclipseJdt', task ':eclipseProject', task ':eclipse', task ':jalviewjsCreateJ2sSettings', task ':jalviewjsEclipsePaths', task ':jalviewjsEclipseCopyDropins', task ':jalviewjsSetEclipseWorkspace', task ':jalviewjsEclipseSetup', task ':jalviewjsEnableAltFileProperty', task ':eclipseSetup', task ':jalviewjsProjectImport', task ':jalviewjsTranspile', task ':jalviewjsCopyTransferSiteJs', task ':jalviewjsTransferUnzipLib', task ':jalviewjsTransferUnzipSwingJs', task ':jalviewjsTransferUnzipAllLibs', task ':jalviewjsSyncAllLibs', task ':copyResources', task ':createBuildProperties', task ':jalviewjsSyncBuildProperties', task ':jalviewjsBuildAllCores', task ':jalviewjsPublishCoreTemplates', task ':jalviewjsSyncCore', task ':copyChannelResources', task ':buildResources', task ':jalviewjsSyncResources', task ':jalviewjsSyncSiteResources', task ':jalviewjsPrepareSite', task ':jalviewjsBuildSite', task ':cleanJalviewjsChromiumUserDir', task ':jalviewjsChromiumProfile', task ':jalviewjsCopyStderrLaunchFile', task ':jalviewjsLaunchTest', task ':jalviewjs']
build 07-Feb-2025 00:01:49 Tasks that were excluded: []
build 07-Feb-2025 00:01:49 :eclipseClasspath (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :eclipseClasspath
build 07-Feb-2025 00:01:50 Caching disabled for task ':eclipseClasspath' because:
build 07-Feb-2025 00:01:50 Build cache is disabled
build 07-Feb-2025 00:01:50 Task ':eclipseClasspath' is not up-to-date because:
build 07-Feb-2025 00:01:50 Task.upToDateWhen is false.
build 07-Feb-2025 00:01:50 :eclipseClasspath (Thread[Execution worker for ':',5,main]) completed. Took 0.254 secs.
build 07-Feb-2025 00:01:50 :eclipseJdt (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :eclipseJdt
build 07-Feb-2025 00:01:50 Caching disabled for task ':eclipseJdt' because:
build 07-Feb-2025 00:01:50 Build cache is disabled
build 07-Feb-2025 00:01:50 Task ':eclipseJdt' is not up-to-date because:
build 07-Feb-2025 00:01:50 Task.upToDateWhen is false.
build 07-Feb-2025 00:01:50 :eclipseJdt (Thread[Execution worker for ':',5,main]) completed. Took 0.034 secs.
build 07-Feb-2025 00:01:50 :eclipseProject (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :eclipseProject
build 07-Feb-2025 00:01:50 Caching disabled for task ':eclipseProject' because:
build 07-Feb-2025 00:01:50 Build cache is disabled
build 07-Feb-2025 00:01:50 Task ':eclipseProject' is not up-to-date because:
build 07-Feb-2025 00:01:50 Task.upToDateWhen is false.
build 07-Feb-2025 00:01:50 :eclipseProject (Thread[Execution worker for ':',5,main]) completed. Took 0.009 secs.
build 07-Feb-2025 00:01:50 :eclipse (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :eclipse
build 07-Feb-2025 00:01:50 Skipping task ':eclipse' as it has no actions.
build 07-Feb-2025 00:01:50 :eclipse (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:01:50 :jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :jalviewjsCreateJ2sSettings
build 07-Feb-2025 00:01:50 Caching disabled for task ':jalviewjsCreateJ2sSettings' because:
build 07-Feb-2025 00:01:50 Build cache is disabled
build 07-Feb-2025 00:01:50 Task ':jalviewjsCreateJ2sSettings' is not up-to-date because:
build 07-Feb-2025 00:01:50 No history is available.
build 07-Feb-2025 00:01:50 :jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) completed. Took 0.007 secs.
build 07-Feb-2025 00:01:50 :jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :jalviewjsEclipsePaths
build 07-Feb-2025 00:01:50 Caching disabled for task ':jalviewjsEclipsePaths' because:
build 07-Feb-2025 00:01:50 Build cache is disabled
build 07-Feb-2025 00:01:50 Task ':jalviewjsEclipsePaths' is not up-to-date because:
build 07-Feb-2025 00:01:50 Task has not declared any outputs despite executing actions.
build 07-Feb-2025 00:01:50 Running task jalviewjsEclipsePaths as IN_ECLIPSE=false
build 07-Feb-2025 00:01:50 ECLIPSE VERSION=4.28.0
build 07-Feb-2025 00:01:50 :jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build 07-Feb-2025 00:01:50 :jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :jalviewjsEclipseCopyDropins
build 07-Feb-2025 00:01:50 Caching disabled for task ':jalviewjsEclipseCopyDropins' because:
build 07-Feb-2025 00:01:50 Build cache is disabled
build 07-Feb-2025 00:01:50 Task ':jalviewjsEclipseCopyDropins' is not up-to-date because:
build 07-Feb-2025 00:01:50 No history is available.
build 07-Feb-2025 00:01:50 :jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) completed. Took 0.006 secs.
build 07-Feb-2025 00:01:50 :jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :jalviewjsSetEclipseWorkspace
build 07-Feb-2025 00:01:50 Caching disabled for task ':jalviewjsSetEclipseWorkspace' because:
build 07-Feb-2025 00:01:50 Build cache is disabled
build 07-Feb-2025 00:01:50 Task ':jalviewjsSetEclipseWorkspace' is not up-to-date because:
build 07-Feb-2025 00:01:50 Task.upToDateWhen is false.
build 07-Feb-2025 00:01:50 Running task jalviewjsSetEclipseWorkspace as IN_ECLIPSE=false
build 07-Feb-2025 00:01:50 NEW ECLIPSE WORKSPACE: /tmp/groovy-generated-tmpdir-3484603740609067674
build 07-Feb-2025 00:01:50 :jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) completed. Took 0.006 secs.
build 07-Feb-2025 00:01:50 :jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :jalviewjsEclipseSetup
build 07-Feb-2025 00:01:50 Skipping task ':jalviewjsEclipseSetup' as it has no actions.
build 07-Feb-2025 00:01:50 :jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:01:50 :jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :jalviewjsEnableAltFileProperty
build 07-Feb-2025 00:01:50 Caching disabled for task ':jalviewjsEnableAltFileProperty' because:
build 07-Feb-2025 00:01:50 Build cache is disabled
build 07-Feb-2025 00:01:50 Task ':jalviewjsEnableAltFileProperty' is not up-to-date because:
build 07-Feb-2025 00:01:50 No history is available.
build 07-Feb-2025 00:01:50 :jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs.
build 07-Feb-2025 00:01:50 :eclipseSetup (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:01:50
build 07-Feb-2025 00:01:50 > Task :eclipseSetup
build 07-Feb-2025 00:01:50 Skipping task ':eclipseSetup' as it has no actions.
build 07-Feb-2025 00:01:50 :eclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:01:50 :jalviewjsProjectImport (Thread[Execution worker for ':',5,main]) started.
error 07-Feb-2025 00:01:52 SLF4J: No SLF4J providers were found.
error 07-Feb-2025 00:01:52 SLF4J: Defaulting to no-operation (NOP) logger implementation
error 07-Feb-2025 00:01:52 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
build 07-Feb-2025 00:01:52
build 07-Feb-2025 00:01:52 > Task :jalviewjsProjectImport
build 07-Feb-2025 00:01:52 Caching disabled for task ':jalviewjsProjectImport' because:
build 07-Feb-2025 00:01:52 Build cache is disabled
build 07-Feb-2025 00:01:52 Task ':jalviewjsProjectImport' is not up-to-date because:
build 07-Feb-2025 00:01:52 Task.upToDateWhen is false.
build 07-Feb-2025 00:01:52 Running task jalviewjsProjectImport as IN_ECLIPSE=false
build 07-Feb-2025 00:01:52 Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application com.seeq.eclipse.importprojects.headlessimport -data /tmp/groovy-generated-tmpdir-3484603740609067674 -import /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s
build 07-Feb-2025 00:01:52 Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''
build 07-Feb-2025 00:02:02 :jalviewjsProjectImport (Thread[Execution worker for ':',5,main]) completed. Took 12.715 secs.
build 07-Feb-2025 00:02:02 :jalviewjsTranspile (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:02:04
build 07-Feb-2025 00:02:04 > Task :jalviewjsTranspile
build 07-Feb-2025 00:02:04 Caching disabled for task ':jalviewjsTranspile' because:
build 07-Feb-2025 00:02:04 Build cache is disabled
build 07-Feb-2025 00:02:04 Task ':jalviewjsTranspile' is not up-to-date because:
build 07-Feb-2025 00:02:04 Task.upToDateWhen is false.
build 07-Feb-2025 00:02:04 Running task jalviewjsTranspile as IN_ECLIPSE=false
build 07-Feb-2025 00:02:04 Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application org.eclipse.jdt.apt.core.aptBuild -data /tmp/groovy-generated-tmpdir-3484603740609067674 -cleanBuild jalview --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s
build 07-Feb-2025 00:02:04 Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''
error 07-Feb-2025 00:02:04 SLF4J: No SLF4J providers were found.
error 07-Feb-2025 00:02:04 SLF4J: Defaulting to no-operation (NOP) logger implementation
error 07-Feb-2025 00:02:04 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
build 07-Feb-2025 00:02:06 Invoking 'Java Builder' on '/jalview'.
build 07-Feb-2025 00:02:08 net.sf.j2s.core.3.3.1/3.3.1-v1 started
build 07-Feb-2025 00:02:08 J2S CompilationParticipant started
build 07-Feb-2025 00:02:08 J2S isActive true /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
build 07-Feb-2025 00:02:08 J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
build 07-Feb-2025 00:02:08 J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
build 07-Feb-2025 00:02:08 Cleaning output folder for jalview
build 07-Feb-2025 00:02:08 Build done
build 07-Feb-2025 00:02:08 Invoking 'Gradle Project Builder' on '/jalview'.
build 07-Feb-2025 00:02:08 Invoking 'Java Builder' on '/jalview'.
build 07-Feb-2025 00:02:08 J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
build 07-Feb-2025 00:02:08 Preparing to build jalview
build 07-Feb-2025 00:02:08 Cleaning output folder for jalview
build 07-Feb-2025 00:02:08 J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
build 07-Feb-2025 00:02:08 Copying resources to the output folder
build 07-Feb-2025 00:02:08 Analyzing sources
build 07-Feb-2025 00:02:08 J2S buildStarting 1103 files, contexts.size() = 1, isBatch=true
build 07-Feb-2025 00:02:08 Compiling jalview/src/com/github/reinert/jjschema
build 07-Feb-2025 00:02:10 Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 1 warning) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 2 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 3 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 4 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 5 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 9 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 12 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 13 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 14 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 15 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 37 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 38 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 46 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 47 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 48 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 49 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 50 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 51 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 52 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 59 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 63 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 67 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 69 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 89 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 90 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 91 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 98 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:10 (Found 108 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:11 (Found 113 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:11 (Found 114 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:11 (Found 115 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:11 (Found 119 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:11 (Found 120 warnings) Compiling jalview/src/com/stevesoft/pat
build 07-Feb-2025 00:02:11 (Found 120 warnings) Compiling jalview/src/com/stevesoft/pat/wrap
build 07-Feb-2025 00:02:11 (Found 124 warnings) Compiling jalview/src/darrylbu/util
build 07-Feb-2025 00:02:11 (Found 124 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build 07-Feb-2025 00:02:11 (Found 126 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build 07-Feb-2025 00:02:11 (Found 133 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build 07-Feb-2025 00:02:11 (Found 136 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2/port
build 07-Feb-2025 00:02:11 (Found 136 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 143 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 150 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 188 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 195 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 251 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 283 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 290 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 358 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 361 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 364 warnings) Compiling jalview/src/ext/vamsas
build 07-Feb-2025 00:02:11 (Found 366 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 370 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 375 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 380 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 413 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 421 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 422 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 423 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 424 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 426 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 427 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 428 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 434 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 441 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 467 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 471 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 472 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 507 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 571 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 572 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 578 warnings) Compiling jalview/src/jalview/analysis
build 07-Feb-2025 00:02:11 (Found 578 warnings) Compiling jalview/src/jalview/analysis/scoremodels
build 07-Feb-2025 00:02:11 (Found 581 warnings) Compiling jalview/src/jalview/analysis/scoremodels
build 07-Feb-2025 00:02:11 (Found 591 warnings) Compiling jalview/src/jalview/analytics
build 07-Feb-2025 00:02:11 (Found 591 warnings) Compiling jalview/src/jalview/api
build 07-Feb-2025 00:02:11 (Found 591 warnings) Compiling jalview/src/jalview/api/analysis
build 07-Feb-2025 00:02:11 (Found 593 warnings) Compiling jalview/src/jalview/api/structures
build 07-Feb-2025 00:02:11 (Found 596 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 652 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 661 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 662 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 667 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 668 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 670 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 681 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 683 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 688 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 689 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 690 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 691 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 693 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 695 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 696 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 698 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 699 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 704 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 705 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 706 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 708 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 709 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 711 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 719 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 729 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 730 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 731 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 733 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 734 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 739 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 742 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 779 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 781 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 782 warnings) Compiling jalview/src/jalview/appletgui
build 07-Feb-2025 00:02:12 (Found 782 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 786 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 789 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 790 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 797 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 799 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 3 errors + 857 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 3 errors + 862 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 3 errors + 864 warnings) Compiling jalview/src/jalview/bin
build 07-Feb-2025 00:02:12 (Found 3 errors + 864 warnings) Compiling jalview/src/jalview/bin/argparser
build 07-Feb-2025 00:02:12 (Found 3 errors + 865 warnings) Compiling jalview/src/jalview/bin/argparser
build 07-Feb-2025 00:02:12 (Found 3 errors + 867 warnings) Compiling jalview/src/jalview/bin/argparser
build 07-Feb-2025 00:02:12 (Found 3 errors + 868 warnings) Compiling jalview/src/jalview/bin/argparser
build 07-Feb-2025 00:02:13 (Found 3 errors + 868 warnings) Compiling jalview/src/jalview/bin/groovy
build 07-Feb-2025 00:02:13 (Found 3 errors + 868 warnings) Compiling jalview/src/jalview/commands
build 07-Feb-2025 00:02:13 (Found 3 errors + 868 warnings) Compiling jalview/src/jalview/controller
build 07-Feb-2025 00:02:13 (Found 3 errors + 868 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 881 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 882 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 883 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 886 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 887 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 888 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 894 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 898 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 900 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 901 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 902 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 903 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 908 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 909 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 917 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 918 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 919 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 922 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 928 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 932 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 936 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 938 warnings) Compiling jalview/src/jalview/datamodel
build 07-Feb-2025 00:02:13 (Found 3 errors + 939 warnings) Compiling jalview/src/jalview/datamodel/annotations
build 07-Feb-2025 00:02:13 (Found 3 errors + 939 warnings) Compiling jalview/src/jalview/datamodel/features
build 07-Feb-2025 00:02:13 (Found 3 errors + 939 warnings) Compiling jalview/src/jalview/exceptions
build 07-Feb-2025 00:02:13 (Found 3 errors + 939 warnings) Compiling jalview/src/jalview/ext/android
build 07-Feb-2025 00:02:13 (Found 3 errors + 939 warnings) Compiling jalview/src/jalview/ext/ensembl
build 07-Feb-2025 00:02:13 (Found 3 errors + 941 warnings) Compiling jalview/src/jalview/ext/ensembl
build 07-Feb-2025 00:02:13 (Found 3 errors + 943 warnings) Compiling jalview/src/jalview/ext/ensembl
build 07-Feb-2025 00:02:13 (Found 3 errors + 944 warnings) Compiling jalview/src/jalview/ext/ensembl
build 07-Feb-2025 00:02:13 (Found 3 errors + 946 warnings) Compiling jalview/src/jalview/ext/ensembl
build 07-Feb-2025 00:02:13 (Found 3 errors + 949 warnings) Compiling jalview/src/jalview/ext/htsjdk
build 07-Feb-2025 00:02:13 (Found 3 errors + 950 warnings) Compiling jalview/src/jalview/ext/htsjdk
build 07-Feb-2025 00:02:13 (Found 3 errors + 955 warnings) Compiling jalview/src/jalview/ext/jmol
build 07-Feb-2025 00:02:13 (Found 3 errors + 959 warnings) Compiling jalview/src/jalview/ext/paradise
build 07-Feb-2025 00:02:13 (Found 3 errors + 959 warnings) Compiling jalview/src/jalview/ext/pymol
build 07-Feb-2025 00:02:13 (Found 3 errors + 961 warnings) Compiling jalview/src/jalview/ext/pymol
build 07-Feb-2025 00:02:13 (Found 3 errors + 961 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build 07-Feb-2025 00:02:13 (Found 3 errors + 962 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build 07-Feb-2025 00:02:13 (Found 3 errors + 963 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build 07-Feb-2025 00:02:13 (Found 3 errors + 963 warnings) Compiling jalview/src/jalview/ext/so
build 07-Feb-2025 00:02:13 (Found 3 errors + 963 warnings) Compiling jalview/src/jalview/ext/varna
build 07-Feb-2025 00:02:13 (Found 3 errors + 963 warnings) Compiling jalview/src/jalview/fts/api
build 07-Feb-2025 00:02:13 (Found 3 errors + 964 warnings) Compiling jalview/src/jalview/fts/api
build 07-Feb-2025 00:02:13 (Found 3 errors + 965 warnings) Compiling jalview/src/jalview/fts/core
build 07-Feb-2025 00:02:13 (Found 3 errors + 968 warnings) Compiling jalview/src/jalview/fts/core
build 07-Feb-2025 00:02:13 (Found 3 errors + 969 warnings) Compiling jalview/src/jalview/fts/core
build 07-Feb-2025 00:02:13 (Found 3 errors + 970 warnings) Compiling jalview/src/jalview/fts/core
build 07-Feb-2025 00:02:13 (Found 3 errors + 970 warnings) Compiling jalview/src/jalview/fts/service/alphafold
build 07-Feb-2025 00:02:13 (Found 3 errors + 970 warnings) Compiling jalview/src/jalview/fts/service/pdb
build 07-Feb-2025 00:02:13 (Found 3 errors + 977 warnings) Compiling jalview/src/jalview/fts/service/pdb
build 07-Feb-2025 00:02:13 (Found 3 errors + 977 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build 07-Feb-2025 00:02:13 (Found 3 errors + 979 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build 07-Feb-2025 00:02:13 (Found 3 errors + 983 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build 07-Feb-2025 00:02:13 (Found 3 errors + 987 warnings) Compiling jalview/src/jalview/fts/service/uniprot
build 07-Feb-2025 00:02:13 (Found 3 errors + 987 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:13 (Found 3 errors + 988 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 990 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 991 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 992 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 993 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 994 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 995 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 996 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1002 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1004 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1005 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1006 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1015 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1045 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1055 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1056 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1057 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1058 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1063 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1064 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1065 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1070 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1071 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1075 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1080 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1081 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1083 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1084 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1085 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1086 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1087 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1093 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1094 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1095 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1096 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1097 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1099 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1100 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1101 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1104 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1106 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:14 (Found 3 errors + 1113 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1115 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1117 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1118 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1119 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1121 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1125 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1134 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1143 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1146 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1147 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1148 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1150 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1151 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1153 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1159 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1162 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1163 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1201 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1206 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1207 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1234 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1237 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1244 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1302 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1315 warnings) Compiling jalview/src/jalview/gui
build 07-Feb-2025 00:02:15 (Found 3 errors + 1317 warnings) Compiling jalview/src/jalview/gui/structurechooser
build 07-Feb-2025 00:02:15 (Found 3 errors + 1319 warnings) Compiling jalview/src/jalview/gui/structurechooser
build 07-Feb-2025 00:02:15 (Found 3 errors + 1324 warnings) Compiling jalview/src/jalview/gui/structurechooser
build 07-Feb-2025 00:02:15 (Found 3 errors + 1324 warnings) Compiling jalview/src/jalview/httpserver
build 07-Feb-2025 00:02:15 (Found 3 errors + 1324 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1329 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1331 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1333 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1335 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1355 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1357 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1359 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1363 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1366 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1367 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1368 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1369 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1407 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1410 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1412 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1432 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1465 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1467 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1469 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1470 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1471 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1484 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1546 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1547 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:15 (Found 3 errors + 1548 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:16 (Found 3 errors + 1630 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:16 (Found 3 errors + 1635 warnings) Compiling jalview/src/jalview/io
build 07-Feb-2025 00:02:16 (Found 3 errors + 1635 warnings) Compiling jalview/src/jalview/io/cache
build 07-Feb-2025 00:02:16 (Found 3 errors + 1636 warnings) Compiling jalview/src/jalview/io/exceptions
build 07-Feb-2025 00:02:16 (Found 3 errors + 1636 warnings) Compiling jalview/src/jalview/io/gff
build 07-Feb-2025 00:02:16 (Found 3 errors + 1637 warnings) Compiling jalview/src/jalview/io/gff
build 07-Feb-2025 00:02:16 (Found 3 errors + 1637 warnings) Compiling jalview/src/jalview/io/packed
build 07-Feb-2025 00:02:16 (Found 3 errors + 1643 warnings) Compiling jalview/src/jalview/io/packed
build 07-Feb-2025 00:02:16 (Found 3 errors + 1645 warnings) Compiling jalview/src/jalview/io/packed
build 07-Feb-2025 00:02:16 (Found 3 errors + 1645 warnings) Compiling jalview/src/jalview/io/vamsas
build 07-Feb-2025 00:02:16 (Found 3 errors + 1663 warnings) Compiling jalview/src/jalview/io/vamsas
build 07-Feb-2025 00:02:16 (Found 3 errors + 1674 warnings) Compiling jalview/src/jalview/io/vamsas
build 07-Feb-2025 00:02:16 (Found 3 errors + 1675 warnings) Compiling jalview/src/jalview/io/vamsas
build 07-Feb-2025 00:02:16 (Found 3 errors + 1688 warnings) Compiling jalview/src/jalview/io/vamsas
build 07-Feb-2025 00:02:16 (Found 3 errors + 1692 warnings) Compiling jalview/src/jalview/io/vamsas
build 07-Feb-2025 00:02:16 (Found 3 errors + 1696 warnings) Compiling jalview/src/jalview/io/vamsas
build 07-Feb-2025 00:02:16 (Found 3 errors + 1719 warnings) Compiling jalview/src/jalview/io/vamsas
build 07-Feb-2025 00:02:16 (Found 3 errors + 1722 warnings) Compiling jalview/src/jalview/io/vcf
build 07-Feb-2025 00:02:16 (Found 4 errors + 1731 warnings) Compiling jalview/src/jalview/javascript
build 07-Feb-2025 00:02:16 (Found 4 errors + 1735 warnings) Compiling jalview/src/jalview/javascript
build 07-Feb-2025 00:02:16 (Found 4 errors + 1736 warnings) Compiling jalview/src/jalview/javascript/json
build 07-Feb-2025 00:02:16 (Found 4 errors + 1736 warnings) Compiling jalview/src/jalview/javascript/web
build 07-Feb-2025 00:02:16 (Found 4 errors + 1737 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1738 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1739 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1742 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1743 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1744 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1745 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1746 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1749 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1751 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1759 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1760 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1761 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1766 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1768 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1769 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1772 warnings) Compiling jalview/src/jalview/jbgui
build 07-Feb-2025 00:02:16 (Found 4 errors + 1772 warnings) Compiling jalview/src/jalview/json/binding/biojs
build 07-Feb-2025 00:02:16 (Found 4 errors + 1772 warnings) Compiling jalview/src/jalview/json/binding/biojson/v1
build 07-Feb-2025 00:02:16 (Found 4 errors + 1775 warnings) Compiling jalview/src/jalview/log
build 07-Feb-2025 00:02:16 (Found 4 errors + 1777 warnings) Compiling jalview/src/jalview/log
build 07-Feb-2025 00:02:16 (Found 4 errors + 1778 warnings) Compiling jalview/src/jalview/log
build 07-Feb-2025 00:02:16 (Found 4 errors + 1778 warnings) Compiling jalview/src/jalview/math
build 07-Feb-2025 00:02:16 (Found 4 errors + 1779 warnings) Compiling jalview/src/jalview/math
build 07-Feb-2025 00:02:16 (Found 4 errors + 1780 warnings) Compiling jalview/src/jalview/math
build 07-Feb-2025 00:02:16 (Found 4 errors + 1806 warnings) Compiling jalview/src/jalview/project
build 07-Feb-2025 00:02:16 (Found 4 errors + 1807 warnings) Compiling jalview/src/jalview/renderer
build 07-Feb-2025 00:02:16 (Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/renderer
build 07-Feb-2025 00:02:16 (Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/renderer/api
build 07-Feb-2025 00:02:16 (Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/renderer/seqfeatures
build 07-Feb-2025 00:02:16 (Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/rest
build 07-Feb-2025 00:02:16 (Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/schemes
build 07-Feb-2025 00:02:16 (Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/schemes
build 07-Feb-2025 00:02:16 (Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/structure
build 07-Feb-2025 00:02:16 (Found 4 errors + 1812 warnings) Compiling jalview/src/jalview/structure
build 07-Feb-2025 00:02:16 (Found 4 errors + 1813 warnings) Compiling jalview/src/jalview/structure
build 07-Feb-2025 00:02:16 (Found 4 errors + 1818 warnings) Compiling jalview/src/jalview/structure
build 07-Feb-2025 00:02:17 (Found 4 errors + 1819 warnings) Compiling jalview/src/jalview/structures/models
build 07-Feb-2025 00:02:17 (Found 4 errors + 1819 warnings) Compiling jalview/src/jalview/urls
build 07-Feb-2025 00:02:17 (Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/urls
build 07-Feb-2025 00:02:17 (Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/urls/api
build 07-Feb-2025 00:02:17 (Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/urls/applet
build 07-Feb-2025 00:02:17 (Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/urls/desktop
build 07-Feb-2025 00:02:17 (Found 4 errors + 1820 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1821 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1822 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1828 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1829 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1841 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1842 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1846 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1851 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1854 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1855 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1858 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1862 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1866 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1890 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util/dialogrunner
build 07-Feb-2025 00:02:17 (Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util/imagemaker
build 07-Feb-2025 00:02:17 (Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util
build 07-Feb-2025 00:02:17 (Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/util/matcher
build 07-Feb-2025 00:02:17 (Found 4 errors + 1891 warnings) Compiling jalview/src/jalview/viewmodel
build 07-Feb-2025 00:02:17 (Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/viewmodel
build 07-Feb-2025 00:02:17 (Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/viewmodel/annotationfilter
build 07-Feb-2025 00:02:17 (Found 4 errors + 1895 warnings) Compiling jalview/src/jalview/viewmodel/seqfeatures
build 07-Feb-2025 00:02:17 (Found 4 errors + 1895 warnings) Compiling jalview/src/jalview/viewmodel/styles
build 07-Feb-2025 00:02:17 (Found 4 errors + 1895 warnings) Compiling jalview/src/jalview/workers
build 07-Feb-2025 00:02:17 (Found 4 errors + 1899 warnings) Compiling jalview/src/jalview/workers
build 07-Feb-2025 00:02:17 (Found 4 errors + 1899 warnings) Compiling jalview/src/jalview/ws
build 07-Feb-2025 00:02:17 (Found 4 errors + 1901 warnings) Compiling jalview/src/jalview/ws
build 07-Feb-2025 00:02:17 (Found 4 errors + 1905 warnings) Compiling jalview/src/jalview/ws
build 07-Feb-2025 00:02:17 (Found 4 errors + 1905 warnings) Compiling jalview/src/jalview/ws/datamodel
build 07-Feb-2025 00:02:17 (Found 4 errors + 1908 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold
build 07-Feb-2025 00:02:17 (Found 4 errors + 1913 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold
build 07-Feb-2025 00:02:17 (Found 4 errors + 1918 warnings) Compiling jalview/src/jalview/ws/dbsources
build 07-Feb-2025 00:02:17 (Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/ws/dbsources
build 07-Feb-2025 00:02:17 (Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/ws/ebi
build 07-Feb-2025 00:02:17 (Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/ws/io/mime
build 07-Feb-2025 00:02:17 (Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/ws/jws1
build 07-Feb-2025 00:02:17 (Found 4 errors + 1923 warnings) Compiling jalview/src/jalview/ws/jws1
build 07-Feb-2025 00:02:17 (Found 4 errors + 1931 warnings) Compiling jalview/src/jalview/ws/jws1
build 07-Feb-2025 00:02:17 (Found 4 errors + 1944 warnings) Compiling jalview/src/jalview/ws/jws1
build 07-Feb-2025 00:02:17 (Found 4 errors + 1958 warnings) Compiling jalview/src/jalview/ws/jws1
build 07-Feb-2025 00:02:17 (Found 4 errors + 1964 warnings) Compiling jalview/src/jalview/ws/jws1
build 07-Feb-2025 00:02:17 (Found 4 errors + 1965 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 1966 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 1976 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 1983 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 1997 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2000 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2004 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2010 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2016 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2028 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2030 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2034 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2060 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2083 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2084 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2089 warnings) Compiling jalview/src/jalview/ws/jws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2095 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build 07-Feb-2025 00:02:17 (Found 4 errors + 2099 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build 07-Feb-2025 00:02:17 (Found 4 errors + 2102 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build 07-Feb-2025 00:02:17 (Found 4 errors + 2113 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build 07-Feb-2025 00:02:17 (Found 4 errors + 2120 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2
build 07-Feb-2025 00:02:17 (Found 4 errors + 2120 warnings) Compiling jalview/src/jalview/ws/params
build 07-Feb-2025 00:02:17 (Found 4 errors + 2121 warnings) Compiling jalview/src/jalview/ws/params
build 07-Feb-2025 00:02:17 (Found 4 errors + 2121 warnings) Compiling jalview/src/jalview/ws/params/simple
build 07-Feb-2025 00:02:17 (Found 4 errors + 2122 warnings) Compiling jalview/src/jalview/ws/params/simple
build 07-Feb-2025 00:02:17 (Found 4 errors + 2122 warnings) Compiling jalview/src/jalview/ws/rest
build 07-Feb-2025 00:02:17 (Found 4 errors + 2123 warnings) Compiling jalview/src/jalview/ws/rest
build 07-Feb-2025 00:02:17 (Found 4 errors + 2128 warnings) Compiling jalview/src/jalview/ws/rest
build 07-Feb-2025 00:02:17 (Found 4 errors + 2129 warnings) Compiling jalview/src/jalview/ws/rest
build 07-Feb-2025 00:02:17 (Found 4 errors + 2130 warnings) Compiling jalview/src/jalview/ws/rest
build 07-Feb-2025 00:02:17 (Found 4 errors + 2136 warnings) Compiling jalview/src/jalview/ws/rest
build 07-Feb-2025 00:02:17 (Found 4 errors + 2145 warnings) Compiling jalview/src/jalview/ws/rest
build 07-Feb-2025 00:02:17 (Found 4 errors + 2151 warnings) Compiling jalview/src/jalview/ws/rest
build 07-Feb-2025 00:02:17 (Found 4 errors + 2151 warnings) Compiling jalview/src/jalview/ws/rest/params
build 07-Feb-2025 00:02:17 (Found 4 errors + 2154 warnings) Compiling jalview/src/jalview/ws/seqfetcher
build 07-Feb-2025 00:02:17 (Found 4 errors + 2154 warnings) Compiling jalview/src/jalview/ws/sifts
build 07-Feb-2025 00:02:17 (Found 4 errors + 2156 warnings) Compiling jalview/src/jalview/ws/sifts
build 07-Feb-2025 00:02:17 (Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/ws/uimodel
build 07-Feb-2025 00:02:17 (Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/ws/utils
build 07-Feb-2025 00:02:17 (Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/xml/binding/embl
build 07-Feb-2025 00:02:17 (Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/xml/binding/jalview
build 07-Feb-2025 00:02:17 (Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/xml/binding/sifts
build 07-Feb-2025 00:02:17 (Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/xml/binding/uniprot
build 07-Feb-2025 00:02:18 (Found 4 errors + 2166 warnings) Compiling jalview/src/mc_view
build 07-Feb-2025 00:02:18 (Found 4 errors + 2167 warnings) Compiling jalview/src/mc_view
build 07-Feb-2025 00:02:18 (Found 4 errors + 2172 warnings) Compiling jalview/src/mc_view
build 07-Feb-2025 00:02:18 (Found 4 errors + 2179 warnings) Compiling jalview/src/mc_view
build 07-Feb-2025 00:02:18 (Found 4 errors + 2180 warnings) Compiling jalview/src/mc_view
build 07-Feb-2025 00:02:18 (Found 4 errors + 2181 warnings) Compiling jalview/src/mc_view
build 07-Feb-2025 00:02:18 (Found 4 errors + 2181 warnings) Compiling jalview/src/org/jibble/epsgraphics
build 07-Feb-2025 00:02:18 (Found 4 errors + 2182 warnings) Compiling jalview/src/org/jibble/epsgraphics
build 07-Feb-2025 00:02:18 (Found 4 errors + 2188 warnings) Compiling jalview/src/org/jibble/epsgraphics
build 07-Feb-2025 00:02:18 (Found 4 errors + 2188 warnings) Compiling jalview/src/org/json
build 07-Feb-2025 00:02:18 (Found 4 errors + 2190 warnings) Compiling jalview/src/org/json
build 07-Feb-2025 00:02:18 (Found 4 errors + 2191 warnings) Compiling jalview/src/org/json
build 07-Feb-2025 00:02:18 (Found 4 errors + 2202 warnings) Compiling jalview/src/org/json/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2208 warnings) Compiling jalview/src/org/json/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2217 warnings) Compiling jalview/src/org/json/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2219 warnings) Compiling jalview/src/org/json/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2221 warnings) Compiling jalview/src/org/json/simple/parser
build 07-Feb-2025 00:02:18 (Found 4 errors + 2296 warnings) Compiling jalview/src/org/json/simple/parser
build 07-Feb-2025 00:02:18 (Found 4 errors + 2300 warnings) Compiling jalview/src/org/json/simple/parser
build 07-Feb-2025 00:02:18 (Found 4 errors + 2300 warnings) Compiling jalview/src/org/stackoverflowusers/file
build 07-Feb-2025 00:02:18 (Found 4 errors + 2300 warnings) Compiling jalview/src/swingjs/api
build 07-Feb-2025 00:02:18 (Found 4 errors + 2300 warnings) Compiling jalview/src/swingjs/api/js
build 07-Feb-2025 00:02:18 (Found 4 errors + 2301 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build 07-Feb-2025 00:02:18 (Found 4 errors + 2303 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build 07-Feb-2025 00:02:18 (Found 4 errors + 2304 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build 07-Feb-2025 00:02:18 (Found 4 errors + 2306 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build 07-Feb-2025 00:02:18 (Found 4 errors + 2309 warnings) Compiling jalview/src/uk/ac/ebi/www
build 07-Feb-2025 00:02:18 (Found 4 errors + 2312 warnings) Compiling jalview/src/uk/ac/ebi/www
build 07-Feb-2025 00:02:18 (Found 4 errors + 2315 warnings) Compiling jalview/src/uk/ac/ebi/www
build 07-Feb-2025 00:02:18 (Found 4 errors + 2322 warnings) Compiling jalview/src/uk/ac/ebi/www
build 07-Feb-2025 00:02:18 (Found 4 errors + 2370 warnings) Compiling jalview/src/uk/ac/ebi/www
build 07-Feb-2025 00:02:18 (Found 4 errors + 2412 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService
build 07-Feb-2025 00:02:18 (Found 4 errors + 2419 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService
build 07-Feb-2025 00:02:18 (Found 4 errors + 2419 warnings) Compiling jalview/src/vamsas
build 07-Feb-2025 00:02:18 (Found 4 errors + 2420 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2422 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2423 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2425 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2426 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2428 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2429 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2431 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2432 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2434 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2435 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2437 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2438 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2440 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2441 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2443 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2444 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2445 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2447 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2449 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2450 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2452 warnings) Compiling jalview/src/vamsas/objects/simple
build 07-Feb-2025 00:02:18 (Found 4 errors + 2452 warnings) Cleaning output folder for jalview
build 07-Feb-2025 00:02:18 (Found 4 errors + 2452 warnings) Copying resources to the output folder
build 07-Feb-2025 00:02:18 (Found 4 errors + 2452 warnings) Analyzing sources
build 07-Feb-2025 00:02:18 J2S buildStarting 291 files, contexts.size() = 2, isBatch=true
build 07-Feb-2025 00:02:18 (Found 4 errors + 2452 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2460 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2462 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2475 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2488 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2489 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2491 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2532 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2534 warnings) Compiling jalview/test/jalview/analysis
build 07-Feb-2025 00:02:18 (Found 4 errors + 2534 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build 07-Feb-2025 00:02:18 (Found 4 errors + 2539 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build 07-Feb-2025 00:02:18 (Found 4 errors + 2540 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build 07-Feb-2025 00:02:19 (Found 4 errors + 2546 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build 07-Feb-2025 00:02:19 (Found 4 errors + 2547 warnings) Compiling jalview/test/jalview/bin
build 07-Feb-2025 00:02:19 (Found 4 errors + 2548 warnings) Compiling jalview/test/jalview/bin
build 07-Feb-2025 00:02:19 (Found 4 errors + 2549 warnings) Compiling jalview/test/jalview/bin
build 07-Feb-2025 00:02:19 (Found 4 errors + 2552 warnings) Compiling jalview/test/jalview/bin/argparser
build 07-Feb-2025 00:02:19 (Found 4 errors + 2559 warnings) Compiling jalview/test/jalview/commands
build 07-Feb-2025 00:02:19 (Found 4 errors + 2560 warnings) Compiling jalview/test/jalview/controller
build 07-Feb-2025 00:02:19 (Found 4 errors + 2560 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2561 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2574 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2575 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2577 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2586 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2587 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2589 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2590 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2592 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2593 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2594 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2597 warnings) Compiling jalview/test/jalview/datamodel
build 07-Feb-2025 00:02:19 (Found 4 errors + 2598 warnings) Compiling jalview/test/jalview/datamodel/features
build 07-Feb-2025 00:02:19 (Found 4 errors + 2599 warnings) Compiling jalview/test/jalview/datamodel/features
build 07-Feb-2025 00:02:19 (Found 4 errors + 2599 warnings) Compiling jalview/test/jalview/ext/android
build 07-Feb-2025 00:02:19 (Found 4 errors + 2599 warnings) Compiling jalview/test/jalview/ext/ensembl
build 07-Feb-2025 00:02:19 (Found 4 errors + 2599 warnings) Compiling jalview/test/jalview/ext/htsjdk
build 07-Feb-2025 00:02:19 (Found 4 errors + 2600 warnings) Compiling jalview/test/jalview/ext/jmol
build 07-Feb-2025 00:02:19 (Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/jmol
build 07-Feb-2025 00:02:19 (Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/paradise
build 07-Feb-2025 00:02:19 (Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/pymol
build 07-Feb-2025 00:02:19 (Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/rbvi/chimera
build 07-Feb-2025 00:02:19 (Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/ext/so
build 07-Feb-2025 00:02:19 (Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/fts/core
build 07-Feb-2025 00:02:19 (Found 4 errors + 2602 warnings) Compiling jalview/test/jalview/fts/service/pdb
build 07-Feb-2025 00:02:19 (Found 4 errors + 2603 warnings) Compiling jalview/test/jalview/fts/service/pdb
build 07-Feb-2025 00:02:19 (Found 4 errors + 2610 warnings) Compiling jalview/test/jalview/fts/threedbeacons
build 07-Feb-2025 00:02:19 (Found 4 errors + 2615 warnings) Compiling jalview/test/jalview/fts/threedbeacons
build 07-Feb-2025 00:02:19 (Found 4 errors + 2615 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2617 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2619 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2620 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2640 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2665 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2666 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2669 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2670 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2672 warnings) Compiling jalview/test/jalview/gui
build 07-Feb-2025 00:02:19 (Found 4 errors + 2678 warnings) Compiling jalview/test/jalview/gui/structurechooser
build 07-Feb-2025 00:02:19 (Found 4 errors + 2679 warnings) Compiling jalview/test/jalview/io
build 07-Feb-2025 00:02:19 (Found 4 errors + 2680 warnings) Compiling jalview/test/jalview/io
build 07-Feb-2025 00:02:19 (Found 4 errors + 2684 warnings) Compiling jalview/test/jalview/io
build 07-Feb-2025 00:02:19 (Found 4 errors + 2688 warnings) Compiling jalview/test/jalview/io
build 07-Feb-2025 00:02:19 (Found 4 errors + 2690 warnings) Compiling jalview/test/jalview/io
build 07-Feb-2025 00:02:19 (Found 4 errors + 2691 warnings) Compiling jalview/test/jalview/io
build 07-Feb-2025 00:02:19 (Found 4 errors + 2697 warnings) Compiling jalview/test/jalview/io
build 07-Feb-2025 00:02:19 (Found 4 errors + 2699 warnings) Compiling jalview/test/jalview/io
build 07-Feb-2025 00:02:19 (Found 4 errors + 2699 warnings) Compiling jalview/test/jalview/io/cache
build 07-Feb-2025 00:02:19 (Found 4 errors + 2699 warnings) Compiling jalview/test/jalview/io/gff
build 07-Feb-2025 00:02:19 (Found 4 errors + 2700 warnings) Compiling jalview/test/jalview/io/gff
build 07-Feb-2025 00:02:19 (Found 4 errors + 2709 warnings) Compiling jalview/test/jalview/io/vcf
build 07-Feb-2025 00:02:20 (Found 4 errors + 2709 warnings) Compiling jalview/test/jalview/math
build 07-Feb-2025 00:02:20 (Found 4 errors + 2713 warnings) Compiling jalview/test/jalview/project
build 07-Feb-2025 00:02:20 (Found 4 errors + 2714 warnings) Compiling jalview/test/jalview/renderer
build 07-Feb-2025 00:02:20 (Found 4 errors + 2721 warnings) Compiling jalview/test/jalview/renderer
build 07-Feb-2025 00:02:20 (Found 4 errors + 2721 warnings) Compiling jalview/test/jalview/renderer/seqfeatures
build 07-Feb-2025 00:02:20 (Found 4 errors + 2721 warnings) Compiling jalview/test/jalview/schemes
build 07-Feb-2025 00:02:20 (Found 4 errors + 2721 warnings) Compiling jalview/test/jalview/structure
build 07-Feb-2025 00:02:20 (Found 4 errors + 2723 warnings) Compiling jalview/test/jalview/structure
build 07-Feb-2025 00:02:20 (Found 4 errors + 2724 warnings) Compiling jalview/test/jalview/structure
build 07-Feb-2025 00:02:20 (Found 4 errors + 2725 warnings) Compiling jalview/test/jalview/structure
build 07-Feb-2025 00:02:20 (Found 4 errors + 2728 warnings) Compiling jalview/test/jalview/structure
build 07-Feb-2025 00:02:20 (Found 4 errors + 2728 warnings) Compiling jalview/test/jalview/structures/models
build 07-Feb-2025 00:02:20 (Found 4 errors + 2729 warnings) Compiling jalview/test/jalview/urls
build 07-Feb-2025 00:02:20 (Found 4 errors + 2734 warnings) Compiling jalview/test/jalview/urls
build 07-Feb-2025 00:02:20 (Found 4 errors + 2739 warnings) Compiling jalview/test/jalview/urls
build 07-Feb-2025 00:02:20 (Found 4 errors + 2739 warnings) Compiling jalview/test/jalview/util
build 07-Feb-2025 00:02:20 (Found 4 errors + 2746 warnings) Compiling jalview/test/jalview/util
build 07-Feb-2025 00:02:20 (Found 4 errors + 2747 warnings) Compiling jalview/test/jalview/util
build 07-Feb-2025 00:02:20 (Found 4 errors + 2751 warnings) Compiling jalview/test/jalview/util
build 07-Feb-2025 00:02:20 (Found 4 errors + 2752 warnings) Compiling jalview/test/jalview/util
build 07-Feb-2025 00:02:20 (Found 4 errors + 2757 warnings) Compiling jalview/test/jalview/util
build 07-Feb-2025 00:02:20 (Found 4 errors + 2757 warnings) Compiling jalview/test/jalview/util/dialogrunner
build 07-Feb-2025 00:02:20 (Found 4 errors + 2757 warnings) Compiling jalview/test/jalview/util/imagemaker
build 07-Feb-2025 00:02:20 (Found 4 errors + 2757 warnings) Compiling jalview/test/jalview/util/matcher
build 07-Feb-2025 00:02:20 (Found 4 errors + 2760 warnings) Compiling jalview/test/jalview/util/matcher
build 07-Feb-2025 00:02:20 (Found 4 errors + 2760 warnings) Compiling jalview/test/jalview/viewmodel
build 07-Feb-2025 00:02:20 (Found 4 errors + 2761 warnings) Compiling jalview/test/jalview/viewmodel/styles
build 07-Feb-2025 00:02:20 (Found 4 errors + 2761 warnings) Compiling jalview/test/jalview/workers
build 07-Feb-2025 00:02:20 (Found 4 errors + 2761 warnings) Compiling jalview/test/jalview/ws
build 07-Feb-2025 00:02:20 (Found 4 errors + 2763 warnings) Compiling jalview/test/jalview/ws
build 07-Feb-2025 00:02:20 (Found 4 errors + 2766 warnings) Compiling jalview/test/jalview/ws/dbsources
build 07-Feb-2025 00:02:20 (Found 4 errors + 2767 warnings) Compiling jalview/test/jalview/ws/dbsources
build 07-Feb-2025 00:02:20 (Found 4 errors + 2767 warnings) Compiling jalview/test/jalview/ws/ebi
build 07-Feb-2025 00:02:20 (Found 4 errors + 2774 warnings) Compiling jalview/test/jalview/ws/gui
build 07-Feb-2025 00:02:20 (Found 4 errors + 2774 warnings) Compiling jalview/test/jalview/ws/jabaws
build 07-Feb-2025 00:02:20 (Found 4 errors + 2775 warnings) Compiling jalview/test/jalview/ws/jabaws
build 07-Feb-2025 00:02:20 (Found 4 errors + 2776 warnings) Compiling jalview/test/jalview/ws/jabaws
build 07-Feb-2025 00:02:20 (Found 4 errors + 2780 warnings) Compiling jalview/test/jalview/ws/jabaws
build 07-Feb-2025 00:02:20 (Found 4 errors + 2795 warnings) Compiling jalview/test/jalview/ws/jws2
build 07-Feb-2025 00:02:20 (Found 4 errors + 2795 warnings) Compiling jalview/test/jalview/ws/rest
build 07-Feb-2025 00:02:20 (Found 4 errors + 2796 warnings) Compiling jalview/test/jalview/ws/rest
build 07-Feb-2025 00:02:20 (Found 4 errors + 2796 warnings) Compiling jalview/test/jalview/ws/seqfetcher
build 07-Feb-2025 00:02:20 (Found 4 errors + 2797 warnings) Compiling jalview/test/jalview/ws/sifts
build 07-Feb-2025 00:02:20 (Found 4 errors + 2799 warnings) Compiling jalview/test/jalview/ws/utils
build 07-Feb-2025 00:02:20 (Found 4 errors + 2815 warnings) Compiling jalview/test/junit/extensions
build 07-Feb-2025 00:02:20 (Found 4 errors + 2817 warnings) Compiling jalview/test/junit/extensions
build 07-Feb-2025 00:02:20 (Found 4 errors + 2817 warnings) Compiling jalview/test/mc_view
build 07-Feb-2025 00:02:20 (Found 4 errors + 2818 warnings) Compiling jalview/test/mc_view
build 07-Feb-2025 00:02:20 J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/.j2s
build 07-Feb-2025 00:02:20 j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename
build 07-Feb-2025 00:02:20 J2S System.getProperty("org.jalview.jalviewjsj2sfilename") = ./build/jalviewjs/config/j2s
build 07-Feb-2025 00:02:20 J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/./build/jalviewjs/config/j2s
build 07-Feb-2025 00:02:20 j2s.compiler.status = enable
build 07-Feb-2025 00:02:20 j2s.compiler.java.version = 8
build 07-Feb-2025 00:02:20 J2S compiler version set to 8
build 07-Feb-2025 00:02:20 j2s.break.on.error = false
build 07-Feb-2025 00:02:20 j2s.exact.long = true
build 07-Feb-2025 00:02:20 j2s.async.thread = false
build 07-Feb-2025 00:02:20 j2s.compiler.mode = nodebug
build 07-Feb-2025 00:02:20 j2s.site.directory = ./build/jalviewjs/tmp/site_js
build 07-Feb-2025 00:02:20 J2S writing to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s
build 07-Feb-2025 00:02:20 j2s.log.methods.declared = <no log file>
build 07-Feb-2025 00:02:20 j2s.log.methods.called = <no log file>
build 07-Feb-2025 00:02:20 j2s.excluded.paths = test;testng;util
build 07-Feb-2025 00:02:20 j2s.compiler.read.annotations = true
build 07-Feb-2025 00:02:20 j2s.compiler.ignored.annotations = CallerSensitive;ConstructorProperties;Deprecated;Override;SafeVarargs;SuppressWarnings;FunctionalInterface;Documented;Inherited;Native;Repeatable;Retention;
build 07-Feb-2025 00:02:20 j2s.testing = false
build 07-Feb-2025 00:02:20 j2s.compiler.nonqualified.packages = <none>
build 07-Feb-2025 00:02:20 j2s.compiler.nonqualified.classes = <none>
build 07-Feb-2025 00:02:20 j2s.class.replacements = <none>
build 07-Feb-2025 00:02:20 j2s.template.html = utils/jalviewjs/template.html
build 07-Feb-2025 00:02:20 J2S using HTML template /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils/jalviewjs/template.html
build 07-Feb-2025 00:02:20 J2S building JavaScript jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 Fri Feb 07 00:02:20 GMT 2025
build 07-Feb-2025 00:02:20 J2S building JavaScript for 1103 files
build 07-Feb-2025 00:02:20 J2S transpiling (1/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/github/reinert/jjschema/Attributes.java
build 07-Feb-2025 00:02:21 j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/com
build 07-Feb-2025 00:02:21 J2S transpiling (2/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/AmpersandRule.java
build 07-Feb-2025 00:02:21 J2S transpiling (3/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/Any.java
build 07-Feb-2025 00:02:21 J2S transpiling (4/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/BackG.java
build 07-Feb-2025 00:02:21 J2S transpiling (5/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/BackMatch.java
build 07-Feb-2025 00:02:21 J2S transpiling (6/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/BackRefRule.java
build 07-Feb-2025 00:02:21 J2S transpiling (7/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/Backup.java
build 07-Feb-2025 00:02:21 J2S transpiling (8/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/BasicStringBufferLike.java
build 07-Feb-2025 00:02:21 J2S transpiling (9/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/Bits.java
build 07-Feb-2025 00:02:21 J2S transpiling (10/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/Boundary.java
build 07-Feb-2025 00:02:21 J2S transpiling (11/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/Bracket.java
build 07-Feb-2025 00:02:21 J2S transpiling (12/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/CaseMgr.java
build 07-Feb-2025 00:02:21 J2S transpiling (13/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/ChangeRule.java
build 07-Feb-2025 00:02:21 J2S transpiling (14/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/CodeRule.java
build 07-Feb-2025 00:02:21 J2S transpiling (15/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/Ctrl.java
build 07-Feb-2025 00:02:21 J2S transpiling (16/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/Custom.java
build 07-Feb-2025 00:02:21 J2S transpiling (17/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/src/com/stevesoft/pat/CustomEndpoint.java
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build 07-Feb-2025 00:02:22 >>>main found for com.stevesoft.pat.RegexWriter
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build 07-Feb-2025 00:02:28 >>class jalview.appletgui.OverviewCanvas extended java.awt.Component now extends java.awt.Label
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build 07-Feb-2025 00:02:29 >>>main found for jalview.bin.GetdownLauncherUpdate
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build 07-Feb-2025 00:02:30 >>>main found for jalview.bin.Jalview
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build 07-Feb-2025 00:02:30 >>>main found for jalview.bin.JalviewJS2
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build 07-Feb-2025 00:02:30 >>>main found for jalview.bin.Launcher
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build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/dbsources/PfamFullTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/dbsources/PfamSeedTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/dbsources/RemoteFormatTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/dbsources/RfamFullTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/dbsources/RfamSeedTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/dbsources/UniprotTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/dbsources/XfamFetcherTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/ebi/EBIFetchClientTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/gui/Jws2ParamView.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/jabaws/MinJabawsClientTests.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/jabaws/RNAStructExportImport.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/jws2/ParameterUtilsTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/rest/RestClientTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/rest/ShmmrRSBSService.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/sifts/SiftsClientTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/jalview/ws/utils/UrlDownloadClientTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/junit/extensions/PA.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/junit/extensions/PrivilegedAccessor.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/mc_view/AtomTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/mc_view/BondTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/mc_view/PDBChainTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/mc_view/PDBfileTest.java
build 07-Feb-2025 00:02:48 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/test/mc_view/ResidueTest.java
build 07-Feb-2025 00:02:48 J2S processed 1103 .java files, created 1134 .js files and 7 .html files, copied 6 resources
build 07-Feb-2025 00:02:48 J2S buildFinished 1103 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1
build 07-Feb-2025 00:02:48 J2S buildFinished nerror = 0 Fri Feb 07 00:02:48 GMT 2025
build 07-Feb-2025 00:02:48 (Found 4 errors + 2818 warnings) Build done
build 07-Feb-2025 00:02:48 Invoking 'Gradle Project Builder' on '/jalview'.
build 07-Feb-2025 00:03:04
build 07-Feb-2025 00:03:04 Deprecated Gradle features were used in this build, making it incompatible with Gradle 9.0.
build 07-Feb-2025 00:03:04
build 07-Feb-2025 00:03:04 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build 07-Feb-2025 00:03:04
build 07-Feb-2025 00:03:04 See https://docs.gradle.org/8.1.1/userguide/command_line_interface.html#sec:command_line_warnings
error 07-Feb-2025 00:03:04
error 07-Feb-2025 00:03:04 FAILURE: Build failed with an exception.
error 07-Feb-2025 00:03:04
error 07-Feb-2025 00:03:04 * What went wrong:
error 07-Feb-2025 00:03:04 org/gradle/api/plugins/MavenPlugin
error 07-Feb-2025 00:03:04 > org.gradle.api.plugins.MavenPlugin
error 07-Feb-2025 00:03:04
error 07-Feb-2025 00:03:04 * Try:
error 07-Feb-2025 00:03:04 > Run with --stacktrace option to get the stack trace.
error 07-Feb-2025 00:03:04 > Run with --info or --debug option to get more log output.
error 07-Feb-2025 00:03:04 > Run with --scan to get full insights.
error 07-Feb-2025 00:03:04
error 07-Feb-2025 00:03:04 * Get more help at https://help.gradle.org
error 07-Feb-2025 00:03:04
error 07-Feb-2025 00:03:04 CONFIGURE FAILED in 15s
build 07-Feb-2025 00:03:05 Invalidating in-memory cache of /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/.gradle/buildOutputCleanup/outputFiles.bin
build 07-Feb-2025 00:03:05 :jalviewjsTranspile (Thread[Execution worker for ':',5,main]) completed. Took 1 mins 2.202 secs.
build 07-Feb-2025 00:03:05 :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:05
build 07-Feb-2025 00:03:05 > Task :jalviewjsCopyTransferSiteJs
build 07-Feb-2025 00:03:05 Caching disabled for task ':jalviewjsCopyTransferSiteJs' because:
build 07-Feb-2025 00:03:05 Build cache is disabled
build 07-Feb-2025 00:03:05 Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because:
build 07-Feb-2025 00:03:05 No history is available.
build 07-Feb-2025 00:03:05 :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) completed. Took 0.297 secs.
build 07-Feb-2025 00:03:05 :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:05
build 07-Feb-2025 00:03:05 > Task :jalviewjsTransferUnzipLib
build 07-Feb-2025 00:03:05 Caching disabled for task ':jalviewjsTransferUnzipLib' because:
build 07-Feb-2025 00:03:05 Build cache is disabled
build 07-Feb-2025 00:03:05 Task ':jalviewjsTransferUnzipLib' is not up-to-date because:
build 07-Feb-2025 00:03:05 No history is available.
build 07-Feb-2025 00:03:05 :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) completed. Took 0.521 secs.
build 07-Feb-2025 00:03:05 :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:07
build 07-Feb-2025 00:03:07 > Task :jalviewjsTransferUnzipSwingJs
build 07-Feb-2025 00:03:07 Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because:
build 07-Feb-2025 00:03:07 Build cache is disabled
build 07-Feb-2025 00:03:07 Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because:
build 07-Feb-2025 00:03:07 No history is available.
build 07-Feb-2025 00:03:07 :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) completed. Took 1.153 secs.
build 07-Feb-2025 00:03:07 :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:07
build 07-Feb-2025 00:03:07 > Task :jalviewjsTransferUnzipAllLibs
build 07-Feb-2025 00:03:07 Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions.
build 07-Feb-2025 00:03:07 :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:03:07 :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:08
build 07-Feb-2025 00:03:08 > Task :jalviewjsSyncAllLibs
build 07-Feb-2025 00:03:08 Caching disabled for task ':jalviewjsSyncAllLibs' because:
build 07-Feb-2025 00:03:08 Build cache is disabled
build 07-Feb-2025 00:03:08 Task ':jalviewjsSyncAllLibs' is not up-to-date because:
build 07-Feb-2025 00:03:08 No history is available.
build 07-Feb-2025 00:03:08 :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 1.452 secs.
build 07-Feb-2025 00:03:08 :copyResources (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:08
build 07-Feb-2025 00:03:08 > Task :copyResources
build 07-Feb-2025 00:03:08 Deleting stale output file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build
build 07-Feb-2025 00:03:08 Caching disabled for task ':copyResources' because:
build 07-Feb-2025 00:03:08 Build cache is disabled
build 07-Feb-2025 00:03:08 Task ':copyResources' is not up-to-date because:
build 07-Feb-2025 00:03:08 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build has been removed.
build 07-Feb-2025 00:03:08 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build/AmbiguityCodes.dat has been removed.
build 07-Feb-2025 00:03:08 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build/authors.props has been removed.
build 07-Feb-2025 00:03:08 :copyResources (Thread[Execution worker for ':',5,main]) completed. Took 0.022 secs.
build 07-Feb-2025 00:03:08 :createBuildProperties (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:08
build 07-Feb-2025 00:03:08 > Task :createBuildProperties
build 07-Feb-2025 00:03:08 Caching disabled for task ':createBuildProperties' because:
build 07-Feb-2025 00:03:08 Build cache is disabled
build 07-Feb-2025 00:03:08 Task ':createBuildProperties' is not up-to-date because:
build 07-Feb-2025 00:03:08 Value of input property 'comment' has changed for task ':createBuildProperties'
build 07-Feb-2025 00:03:08 Value of input property 'properties' has changed for task ':createBuildProperties'
build 07-Feb-2025 00:03:08 :createBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs.
build 07-Feb-2025 00:03:08 :jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:08
build 07-Feb-2025 00:03:08 > Task :jalviewjsSyncBuildProperties
build 07-Feb-2025 00:03:08 Caching disabled for task ':jalviewjsSyncBuildProperties' because:
build 07-Feb-2025 00:03:08 Build cache is disabled
build 07-Feb-2025 00:03:08 Task ':jalviewjsSyncBuildProperties' is not up-to-date because:
build 07-Feb-2025 00:03:08 No history is available.
build 07-Feb-2025 00:03:08 :jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.109 secs.
build 07-Feb-2025 00:03:08 :jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:10
build 07-Feb-2025 00:03:10 > Task :jalviewjsBuildAllCores
build 07-Feb-2025 00:03:10 Execution optimizations have been disabled for task ':jalviewjsBuildAllCores' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:03:10 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/tmp/site_lib/swingjs/j2s'. Reason: Task ':jalviewjsBuildAllCores' uses this output of task ':jalviewjsTransferUnzipLib' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:03:10 Invalidating VFS because task ':jalviewjsBuildAllCores' failed validation
build 07-Feb-2025 00:03:10 Caching disabled for task ':jalviewjsBuildAllCores' because:
build 07-Feb-2025 00:03:10 Build cache is disabled
build 07-Feb-2025 00:03:10 Task ':jalviewjsBuildAllCores' is not up-to-date because:
build 07-Feb-2025 00:03:10 No history is available.
build 07-Feb-2025 00:03:10 Creating core for jalview...
build 07-Feb-2025 00:03:10 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js
build 07-Feb-2025 00:03:10 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js
build 07-Feb-2025 00:03:10
build 07-Feb-2025 00:03:10 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js'
build 07-Feb-2025 00:03:10
build 07-Feb-2025 00:03:10 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js
build 07-Feb-2025 00:03:10 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build 07-Feb-2025 00:03:18 --
build 07-Feb-2025 00:03:18 Creating core for jvexamplefile...
build 07-Feb-2025 00:03:18 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js
build 07-Feb-2025 00:03:18 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js
build 07-Feb-2025 00:03:18
build 07-Feb-2025 00:03:18 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js'
build 07-Feb-2025 00:03:18
build 07-Feb-2025 00:03:18 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js
build 07-Feb-2025 00:03:18 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build 07-Feb-2025 00:03:21 --
build 07-Feb-2025 00:03:21 Creating core for _jalview...
build 07-Feb-2025 00:03:21 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js
build 07-Feb-2025 00:03:21 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js
build 07-Feb-2025 00:03:21
build 07-Feb-2025 00:03:21 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js'
build 07-Feb-2025 00:03:21
build 07-Feb-2025 00:03:21 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js
build 07-Feb-2025 00:03:21 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build 07-Feb-2025 00:03:22 --
build 07-Feb-2025 00:03:22 Creating core for _stevesoft...
build 07-Feb-2025 00:03:22 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js
build 07-Feb-2025 00:03:22 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js
build 07-Feb-2025 00:03:22
build 07-Feb-2025 00:03:22 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js'
build 07-Feb-2025 00:03:22
build 07-Feb-2025 00:03:22 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js
build 07-Feb-2025 00:03:22 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build 07-Feb-2025 00:03:24 --
build 07-Feb-2025 00:03:24 :jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) completed. Took 16.351 secs.
build 07-Feb-2025 00:03:24 :jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:24
build 07-Feb-2025 00:03:24 > Task :jalviewjsPublishCoreTemplates
build 07-Feb-2025 00:03:24 Caching disabled for task ':jalviewjsPublishCoreTemplates' because:
build 07-Feb-2025 00:03:24 Build cache is disabled
build 07-Feb-2025 00:03:24 Task ':jalviewjsPublishCoreTemplates' is not up-to-date because:
build 07-Feb-2025 00:03:24 No history is available.
build 07-Feb-2025 00:03:24 :jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) completed. Took 0.016 secs.
build 07-Feb-2025 00:03:24 :jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :jalviewjsSyncCore
build 07-Feb-2025 00:03:25 Caching disabled for task ':jalviewjsSyncCore' because:
build 07-Feb-2025 00:03:25 Build cache is disabled
build 07-Feb-2025 00:03:25 Task ':jalviewjsSyncCore' is not up-to-date because:
build 07-Feb-2025 00:03:25 No history is available.
build 07-Feb-2025 00:03:25 :jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) completed. Took 0.182 secs.
build 07-Feb-2025 00:03:25 :copyChannelResources (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :copyChannelResources
build 07-Feb-2025 00:03:25 Execution optimizations have been disabled for task ':copyChannelResources' to ensure correctness due to the following reasons:
build 07-Feb-2025 00:03:25 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:03:25 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':jalviewjsSyncBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build 07-Feb-2025 00:03:25 Invalidating VFS because task ':copyChannelResources' failed validation
build 07-Feb-2025 00:03:25 Caching disabled for task ':copyChannelResources' because:
build 07-Feb-2025 00:03:25 Build cache is disabled
build 07-Feb-2025 00:03:25 Task ':copyChannelResources' is not up-to-date because:
build 07-Feb-2025 00:03:25 Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build 07-Feb-2025 00:03:25 :copyChannelResources (Thread[Execution worker for ':',5,main]) completed. Took 0.009 secs.
build 07-Feb-2025 00:03:25 :buildResources (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :buildResources
build 07-Feb-2025 00:03:25 Skipping task ':buildResources' as it has no actions.
build 07-Feb-2025 00:03:25 :buildResources (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:03:25 :jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :jalviewjsSyncResources
build 07-Feb-2025 00:03:25 Caching disabled for task ':jalviewjsSyncResources' because:
build 07-Feb-2025 00:03:25 Build cache is disabled
build 07-Feb-2025 00:03:25 Task ':jalviewjsSyncResources' is not up-to-date because:
build 07-Feb-2025 00:03:25 No history is available.
build 07-Feb-2025 00:03:25 :jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) completed. Took 0.16 secs.
build 07-Feb-2025 00:03:25 :jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :jalviewjsSyncSiteResources
build 07-Feb-2025 00:03:25 Caching disabled for task ':jalviewjsSyncSiteResources' because:
build 07-Feb-2025 00:03:25 Build cache is disabled
build 07-Feb-2025 00:03:25 Task ':jalviewjsSyncSiteResources' is not up-to-date because:
build 07-Feb-2025 00:03:25 No history is available.
build 07-Feb-2025 00:03:25 :jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) completed. Took 0.223 secs.
build 07-Feb-2025 00:03:25 :jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :jalviewjsPrepareSite
build 07-Feb-2025 00:03:25 Skipping task ':jalviewjsPrepareSite' as it has no actions.
build 07-Feb-2025 00:03:25 :jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:03:25 :jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :jalviewjsBuildSite
build 07-Feb-2025 00:03:25 Skipping task ':jalviewjsBuildSite' as it has no actions.
build 07-Feb-2025 00:03:25 :jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:03:25 :cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :cleanJalviewjsChromiumUserDir
build 07-Feb-2025 00:03:25 Caching disabled for task ':cleanJalviewjsChromiumUserDir' because:
build 07-Feb-2025 00:03:25 Build cache is disabled
build 07-Feb-2025 00:03:25 Task ':cleanJalviewjsChromiumUserDir' is not up-to-date because:
build 07-Feb-2025 00:03:25 No history is available.
build 07-Feb-2025 00:03:25 :cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs.
build 07-Feb-2025 00:03:25 :jalviewjsChromiumProfile (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :jalviewjsChromiumProfile
build 07-Feb-2025 00:03:25 Caching disabled for task ':jalviewjsChromiumProfile' because:
build 07-Feb-2025 00:03:25 Build cache is disabled
build 07-Feb-2025 00:03:25 Task ':jalviewjsChromiumProfile' is not up-to-date because:
build 07-Feb-2025 00:03:25 No history is available.
build 07-Feb-2025 00:03:25 :jalviewjsChromiumProfile (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build 07-Feb-2025 00:03:25 :jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25
build 07-Feb-2025 00:03:25 > Task :jalviewjsCopyStderrLaunchFile
build 07-Feb-2025 00:03:25 Caching disabled for task ':jalviewjsCopyStderrLaunchFile' because:
build 07-Feb-2025 00:03:25 Build cache is disabled
build 07-Feb-2025 00:03:25 Task ':jalviewjsCopyStderrLaunchFile' is not up-to-date because:
build 07-Feb-2025 00:03:25 No history is available.
build 07-Feb-2025 00:03:25 :jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':',5,main]) completed. Took 0.053 secs.
build 07-Feb-2025 00:03:25 :jalviewjsLaunchTest (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:25 COMMAND: '/home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html'
build 07-Feb-2025 00:03:25 Starting process 'command '/home/bamboo/buildtools/chromium/chrome''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 Command: /home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html
build 07-Feb-2025 00:03:25 Successfully started process 'command '/home/bamboo/buildtools/chromium/chrome''
error 07-Feb-2025 00:03:26 [31823:31823:0207/000326.449096:WARNING:chrome_main_delegate.cc(593)] This is Thorium version: 114.0.5735.134 (not a warning)
error 07-Feb-2025 00:03:26 [31823:31823:0207/000326.885629:WARNING:chrome_browser_cloud_management_controller.cc(87)] Could not create policy manager as CBCM is not enabled.
build 07-Feb-2025 00:03:27
build 07-Feb-2025 00:03:27 > Task :jalviewjsLaunchTest
build 07-Feb-2025 00:03:27 Caching disabled for task ':jalviewjsLaunchTest' because:
build 07-Feb-2025 00:03:27 Build cache is disabled
build 07-Feb-2025 00:03:27 Task ':jalviewjsLaunchTest' is not up-to-date because:
build 07-Feb-2025 00:03:27 Task has not declared any outputs despite executing actions.
error 07-Feb-2025 00:03:27 [31823:31838:0207/000327.589844:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error 07-Feb-2025 00:03:27 [31823:31838:0207/000327.595620:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error 07-Feb-2025 00:03:27 [31823:31838:0207/000327.595644:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error 07-Feb-2025 00:03:27 [31823:31838:0207/000327.595657:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
build 07-Feb-2025 00:03:27
error 07-Feb-2025 00:03:27 [31823:31823:0207/000327.722237:ERROR:chrome_browser_cloud_management_controller.cc(162)] Cloud management controller initialization aborted as CBCM is not enabled.
error 07-Feb-2025 00:03:27 [31823:31838:0207/000327.931749:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error 07-Feb-2025 00:03:27 [31823:31838:0207/000327.931780:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error 07-Feb-2025 00:03:28 [31850:31850:0207/000328.222052:ERROR:vaapi_wrapper.cc(3273)] Failed to initialize VAAPI libs
error 07-Feb-2025 00:03:28 [31850:31850:0207/000328.233025:WARNING:sandbox_linux.cc(393)] InitializeSandbox() called with multiple threads in process gpu-process.
error 07-Feb-2025 00:03:28 [31823:31835:0207/000328.307368:WARNING:external_pref_loader.cc(294)] You are using an old-style extension deployment method (external_extensions.json), which will soon be deprecated. (see http://developer.chrome.com/extensions/external_extensions.html)
error 07-Feb-2025 00:03:28 [31852:31881:0207/000328.373110:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration
error 07-Feb-2025 00:03:28 [31852:31881:0207/000328.373375:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration
error 07-Feb-2025 00:03:29 [31823:31823:0207/000328.987579:WARNING:bluez_dbus_manager.cc(247)] Floss manager not present, cannot set Floss enable/disable.
error 07-Feb-2025 00:03:29 [31823:31823:0207/000328.987688:ERROR:object_proxy.cc(590)] Failed to call method: org.freedesktop.portal.Settings.Read: object_path= /org/freedesktop/portal/desktop: unknown error type:
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.648950:INFO:CONSOLE(13141)] "J2SApplet load testApplet loadClazz...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.648979:INFO:CONSOLE(13141)] "J2SApplet load testApplet start applet...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.721916:INFO:CONSOLE(13084)] "j2sApplet exec testApplet loadClazz null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.749577:INFO:CONSOLE(16968)] "j2sApplet exec testApplet start applet null
error 07-Feb-2025 00:03:29 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.749602:INFO:CONSOLE(13084)] "j2sApplet exec testApplet start applet null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.751483:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Class.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.764032:INFO:CONSOLE(26)] "transpiler was unknown now 3.3.1-v1 for java.lang.Class
error 07-Feb-2025 00:03:29 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.764062:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Jalview.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.766871:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/groovy/JalviewObjectI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.771058:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/Platform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.772746:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Console.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.775018:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.jalview.org
error 07-Feb-2025 00:03:29 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.775040:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.jalview.org
error 07-Feb-2025 00:03:29 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.775055:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.compbio.dundee.ac.uk
error 07-Feb-2025 00:03:29 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.775065:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.compbio.dundee.ac.uk
error 07-Feb-2025 00:03:29 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.775249:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Hashtable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.783797:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Dictionary.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.789947:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Map.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.793164:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.796602:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.805059:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.807210:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFrameViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.809233:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSApp.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.812221:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSInterface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.813883:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletStub.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.815799:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.817772:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URL.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.820475:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/Interface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.822809:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory
error 07-Feb-2025 00:03:29 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.822831:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.835301:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.838089:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.840364:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractCollection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.842528:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.845318:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Iterable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.846902:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Set.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.851149:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Enumeration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.853013:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Iterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.856389:INFO:CONSOLE(16968)] "JSApp get parameter: language = null
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.856506:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSUtil.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.859946:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/JSUtilI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.861667:INFO:CONSOLE(16968)] "swingjs.JSUtil initialized;debug=false
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.862110:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Locale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.865705:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/BaseLocale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.869016:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/StringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.872834:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AbstractStringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.879081:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LocaleUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.882877:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Enum.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.885532:INFO:CONSOLE(16968)] "JSApp get parameter: name = testApplet
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.885559:INFO:CONSOLE(16968)] "JSApp get parameter: syncId = 9544382764161274
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.885582:INFO:CONSOLE(16968)] "JSApp initialized
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.885593:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Dimension.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.887789:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Dimension2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.889935:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Lst.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.891824:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ArrayList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.895305:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.897743:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/List.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.900769:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/RandomAccess.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.902682:INFO:CONSOLE(16968)] "JSAppletViewer initializing2
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.902875:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Insets.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.906613:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.911001:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.914657:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Thread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.917792:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/JSThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.920286:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.927518:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.930850:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Toolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.933826:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/ComponentFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.936397:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.938872:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.940820:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.943253:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PostEventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.945139:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.947532:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.950940:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/ChangeListenerMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.953010:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.956049:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.958761:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentThreadAppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.960951:INFO:CONSOLE(16968)] "JSToolkit initialized
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.960972:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.962876:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.965236:INFO:CONSOLE(16968)] "JSGraphicsConfiguration initialized
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.965262:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.968110:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.968149:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.970071:INFO:CONSOLE(16968)] "JSGraphicsEnvironment initialized
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.970199:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSScreenDevice
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error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.970416:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSScreenDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:29 [31823:31823:0207/000329.972649:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.976201:INFO:CONSOLE(16968)] "JSScreenDevice initialized
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.979622:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=0 status=0
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.980372:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingUtilities.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.983810:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.985972:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentKeyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.988194:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InvocationEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.990054:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.993385:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.997220:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ActiveEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000329.999884:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AWTAutoShutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.002725:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.006309:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/IdentityHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.011001:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventDispatchThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.013537:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.015961:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventFilter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.018593:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Arrays.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.023092:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.026569:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=1
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.026588:INFO:CONSOLE(16968)] "JSAppletViewer runloader
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.027125:INFO:CONSOLE(16968)] "JSApp get parameter: main = jalview.bin.Jalview
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.027142:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSDummyApplet
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.027336:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSDummyApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.029290:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.033145:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/JSApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.035332:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.037500:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Container.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.041548:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.044340:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Component.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.050467:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageObserver.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.052492:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RootPaneContainer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.055131:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FlowLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.057072:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.059534:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ComponentOrientation.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.062234:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JRootPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.064466:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.073813:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/EventListenerList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.077300:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.081773:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.082218:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/HTML5LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.084359:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.086736:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/FontUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.091395:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/UIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.102801:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Transparency.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.105058:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ColorUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.107982:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/SwingLazyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.111693:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/InsetsUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.114080:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/BorderUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.120136:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/AbstractBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.134981:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingPaintEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.139338:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPanelUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.141132:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLightweightUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.142885:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSComponentUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.147016:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.150655:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSEventHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.152825:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.154455:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/peer/DropTargetPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.156764:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/LightweightPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.158881:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/ContainerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.162066:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.164345:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.167071:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.168346:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventPostProcessor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.170680:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTKeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.174702:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.177324:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSequentialList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.179178:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Deque.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.181035:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.182816:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultKeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.185279:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.187039:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.188927:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.191135:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collections.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.198255:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFocusPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.202065:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/KeyboardFocusManagerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.204806:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/DOMNode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.207412:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Cursor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.211447:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JLayeredPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.217047:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLayeredPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.219879:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/BorderLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.222580:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager2.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.224809:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ArrayTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.228895:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/FocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.231139:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LayoutFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.233672:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SortingFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.238145:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InternalFrameFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.241914:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.244407:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingDefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.246961:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LayoutComparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.249081:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Comparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.253538:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRootPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.264683:INFO:CONSOLE(16968)] "testApplet loaded
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.273146:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=76
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.273183:INFO:CONSOLE(298)] "testApplet running jalview.bin.Jalview", source: swingjs/j2s/swingjs/JSUtil.js (298)
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.387247:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSImagekit
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.562546:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/SimpleDateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.568610:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/AttributedCharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.571143:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/CharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.573540:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimeZone.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.619396:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.621618:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfoFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.624920:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/calendar/tzdb.dat", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.633050:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.635183:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInput.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.648234:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Calendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.651486:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/spi/CalendarProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.653829:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.656109:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/GregorianCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.659366:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.661007:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of sun.util.calendar.Gregorian
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.661155:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/Gregorian.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.663493:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/BaseCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.665814:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/AbstractCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.668533:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataUtility.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.670572:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CalendarDataProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.672187:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleServiceProviderPool.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.674108:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/BreakIteratorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.676200:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/CollatorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.678750:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.680068:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DecimalFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.682196:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/NumberFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.683703:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CurrencyNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.685251:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.687342:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/TimeZoneNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.693716:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.696273:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedExceptionAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.698962:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ServiceLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.703959:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleResources.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.706191:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ref/ReferenceQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.708128:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/LocaleData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.710391:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.715617:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.715641:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/CalendarData.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.717753:INFO:CONSOLE(16968)] "JSUtil caching 1780 bytes for swingjs/j2s/sun/util/resources/CalendarData.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.717773:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of java.util.PropertyResourceBundle
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.717818:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/PropertyResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.723530:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.723552:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.725474:INFO:CONSOLE(16968)] "JSUtil caching 1943 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.725844:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.726391:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.730842:INFO:CONSOLE(16968)] "JSUtil caching 1786 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.730873:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.730914:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.730929:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.730939:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarDate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.734610:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.736989:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.739435:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/FormatData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.741319:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/ParallelListResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.744885:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.747039:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en_GB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.750351:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/NumberFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.753037:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.758164:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.761268:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/FieldPosition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.765481:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DigitList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.767734:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/math/RoundingMode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.775867:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/LaunchUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.777680:INFO:CONSOLE(16968)] "Jalview Test Version: TEST
error 07-Feb-2025 00:03:30 Jalview Test Installation: unknown
error 07-Feb-2025 00:03:30 Channel: test-release
error 07-Feb-2025 00:03:30 Build Date: unknown
error 07-Feb-2025 00:03:30 Preferences file: unknown
error 07-Feb-2025 00:03:30 Log file: unknown
error 07-Feb-2025 00:03:30 Java version: 1.8
error 07-Feb-2025 00:03:30 Java home: https://.
error 07-Feb-2025 00:03:30 Java launch class: unknown
error 07-Feb-2025 00:03:30 Java platform: Mozilla/5.0 5.0 (X11) (Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/114.0.0.0 Safari/537.36)
error 07-Feb-2025 00:03:30 Java LAF: SwingJS (swingjs.plaf.HTML5LookAndFeel)
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.777988:INFO:CONSOLE(26)] "Using default properties file '/TEMP/swingjs/.jalview_test_properties'
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.778145:INFO:CONSOLE(26)] "Falling back to properties file '/TEMP/swingjs/.jalview_properties'
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.778180:INFO:CONSOLE(26)] "Could not load bootstrap preferences file '/TEMP/swingjs/.jalview_properties'
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.778529:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.780950:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.783158:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/BuildDetails.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.785563:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/BuildDetailsI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.787362:INFO:CONSOLE(16968)] "Jalview Test version: 2.11.4.1-test (Source git-commit:a07a210e39 [main])
error 07-Feb-2025 00:03:30 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.787386:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/ArgsParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.789051:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Vector.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.798353:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.800398:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLogger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.802571:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerLog4j.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.805087:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Runtime.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.807695:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ApplicationShutdownHooks.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.809748:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Shutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.812790:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.814394:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.816096:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.818257:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/sifts/SiftsSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.820283:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/urls/IdOrgSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.823501:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/PIRFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.825595:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.827236:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileParse.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.829376:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileReaderI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.831007:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileWriterI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.833109:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/ArgParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.836648:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.838121:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/JumboEnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.841298:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ArgParserUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.844110:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormats.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.846264:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.848698:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormatI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.859370:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/UserAgent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.862275:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/Desktop.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.868032:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/jbgui/GDesktop.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.870226:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JFrame.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.872316:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSFrame.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.875202:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Window.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.878298:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/WindowConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.880596:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTargetListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.882383:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/ClipboardOwner.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.884308:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/IProgressIndicator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.890147:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/StructureSelectionManagerProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.892325:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/SplashScreen.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.894666:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/HyperlinkListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.898637:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/barton_group-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.902510:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/UoD_banner-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.911958:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphics2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.916794:INFO:CONSOLE(16968)] "JSGraphics2D pixelRatio is 1.0
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error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.916887:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/RenderingHints.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.923569:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/AffineTransform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.928977:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/BasicStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.930200:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Stroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.955328:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSFrameUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.957379:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSWindowUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.959763:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/WindowPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.962648:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:30 [31823:31823:0207/000330.964420:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.966249:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/FramePeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.968182:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEventMulticaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.970139:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.971922:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.973534:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.975322:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.977088:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.978742:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowFocusListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.980440:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowStateListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.981999:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ActionListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.983527:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ItemListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.985413:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AdjustmentListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.987126:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/TextListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.989064:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputMethodListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.990914:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.992698:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyBoundsListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000330.994947:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseWheelListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.001026:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuBar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.002680:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/MenuElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.005477:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultSingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.008174:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.010644:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuBarUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.014818:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/DefaultMenuLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.017051:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BoxLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.020426:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/DefaultLookup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.022888:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/LazyActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.024954:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ActionMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.026906:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.029796:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.033077:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.035700:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/AbstractButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.040009:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ItemSelectable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.043437:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.045743:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.049106:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.051146:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.053165:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.055627:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.058504:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/basic/BasicBorders.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.061412:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/Constructor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.064011:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AccessibleObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.067301:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AnnotatedElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.070904:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/ButtonListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.073504:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/AncestorListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.076557:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentInputMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.080203:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ComponentInputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.082537:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.099707:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BorderFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.102351:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/BevelBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.146251:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JCheckBoxMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.148987:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JToggleButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.151292:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.153819:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.155433:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRadioButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.183111:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/APQHandlers.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.184190:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/MessageManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.188748:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Formatter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.197908:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Pattern.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.199736:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Matcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.202130:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/MatchResult.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.206548:INFO:CONSOLE(16968)] "INFO: Getting messages for lang: en_GB
error 07-Feb-2025 00:03:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.206989:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages.properties
error 07-Feb-2025 00:03:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.207187:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.214035:INFO:CONSOLE(16968)] "JSUtil caching 90933 bytes for swingjs/j2s/lang/Messages.properties
error 07-Feb-2025 00:03:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.238467:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en.properties
error 07-Feb-2025 00:03:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.238493:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.238506:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en_GB.properties
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error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.238516:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.242066:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.244577:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.247132:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/font/FontRenderContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.253725:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.256769:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper8.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.258547:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapperI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.260822:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.264140:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.266833:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.268226:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.292916:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ToolTipManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.294920:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.297090:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Timer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.299469:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.302828:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.305643:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPopupMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.308040:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.310608:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/JQueryUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.316110:INFO:CONSOLE(16968)] "JSUtil getting Java resource swingjs/jquery/j2sMenu.js
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error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.316294:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/j2sMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.318362:INFO:CONSOLE(16968)] "Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [24845]
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error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.319615:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuKeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.322287:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.330247:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/CompoundBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.334100:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JSeparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.335420:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.337036:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.361173:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyboardManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.388445:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SizeRequirements.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.399999:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.426572:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/JalviewChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.430217:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executors.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.432596:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/TimeUnit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.434165:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/LinkedBlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.436601:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.438236:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/BlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.440149:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/atomic/AtomicInteger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.442006:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/ReentrantLock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.444242:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Lock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.446323:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractQueuedSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.449250:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractOwnableSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.451102:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Condition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.452990:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadPoolExecutor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.455375:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/AbstractExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.457462:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.459168:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.461147:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/RejectedExecutionHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.463206:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.465182:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Semaphore.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.468386:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureSelectionManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.472493:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JDesktopPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.474841:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSDesktopPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.477774:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultDesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.479411:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.485112:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTarget.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.487471:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTargetContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.489669:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/SystemFlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.491619:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.494198:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.497229:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP
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error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.497793:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/JalviewTaskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.499240:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Taskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.501996:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/Resizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.504684:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSFunction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.520350:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.523131:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Commands.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.526923:INFO:CONSOLE(16968)] "WARN: Error when running commands
error 07-Feb-2025 00:03:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.526951:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.545955:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/net/ssl/HttpsURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.547799:INFO:CONSOLE(10504)] "xhr.open binary async=false url=https://www.jalview.org/jalview-js//swingjs/j2s/build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.567728:INFO:CONSOLE(26)] "Non-fatal exception when checking version at https://www.jalview.org/jalview-js//swingjs/j2s/build_properties:
error 07-Feb-2025 00:03:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.567785:INFO:CONSOLE(26)] "java.io.FileNotFoundException: opening https://www.jalview.org/jalview-js//swingjs/j2s/build_properties
error 07-Feb-2025 00:03:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.567998:INFO:CONSOLE(26)] "anonymous.anonymous(Unknown Source)
error 07-Feb-2025 00:03:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.581838:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/HTML5CanvasContext2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.586903:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.588869:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunGraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.619339:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/CausedFocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.622138:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.631781:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimSort.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.636765:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ListIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.687826:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/SentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.691276:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error 07-Feb-2025 00:03:31 [31823:31823:0207/000331.763658:WARNING:pref_notifier_impl.cc(41)] Pref observer for media_router.cast_allow_all_ips found at shutdown.
build 07-Feb-2025 00:03:36
build 07-Feb-2025 00:03:36 > Task :jalviewjsLaunchTest
build 07-Feb-2025 00:03:36 Found line '[31823:31823:0207/000331.497229:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP'
build 07-Feb-2025 00:03:36 :jalviewjsLaunchTest (Thread[Execution worker for ':',5,main]) completed. Took 11.237 secs.
build 07-Feb-2025 00:03:36 :jalviewjs (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:36
build 07-Feb-2025 00:03:36 > Task :jalviewjs
build 07-Feb-2025 00:03:36 Skipping task ':jalviewjs' as it has no actions.
build 07-Feb-2025 00:03:36 :jalviewjs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:03:36 producer locations for task group 0 (Thread[Execution worker for ':',5,main]) started.
build 07-Feb-2025 00:03:36 producer locations for task group 0 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:03:36 producer locations for task group 2 (Thread[Execution worker for ':' Thread 2,5,main]) started.
build 07-Feb-2025 00:03:36 producer locations for task group 2 (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:03:36 producer locations for task group 1 (Thread[Execution worker for ':' Thread 3,5,main]) started.
build 07-Feb-2025 00:03:36 producer locations for task group 1 (Thread[Execution worker for ':' Thread 3,5,main]) completed. Took 0.0 secs.
build 07-Feb-2025 00:03:36
build 07-Feb-2025 00:03:36 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build 07-Feb-2025 00:03:36
build 07-Feb-2025 00:03:36 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build 07-Feb-2025 00:03:36
build 07-Feb-2025 00:03:36 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build 07-Feb-2025 00:03:36
build 07-Feb-2025 00:03:36 Execution optimizations have been disabled for 2 invalid unit(s) of work during this build to ensure correctness.
build 07-Feb-2025 00:03:36 Please consult deprecation warnings for more details.
build 07-Feb-2025 00:03:36
build 07-Feb-2025 00:03:36 BUILD SUCCESSFUL in 1m 47s
build 07-Feb-2025 00:03:36 27 actionable tasks: 27 executed
simple 07-Feb-2025 00:03:37 Finished task 'JalviewJS ${bamboo.CHANNEL} release' with result: Success
command 07-Feb-2025 00:03:37 Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
simple 07-Feb-2025 00:03:37 Starting task 'Create tar of getdown ${bamboo.CHANNEL} channel website' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command 07-Feb-2025 00:03:37 Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #17 (JB-GTC-JOB1-17)'\n ... running command line: \n/srv/bamboo/bamboo-home/temp/JB-GTC-JOB1-17-ScriptBuildTask-5223154845727890113.sh\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=main\nbamboo_repository_46498241_branch_name=main\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=main\nbamboo_repository_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_repository_46498241_name=Jalview Gitlab\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GTC-JOB1\nbamboo_shortPlanName=Getdown TEST_RELEASE Channel\nbamboo_planRepository_name=Jalview Gitlab\nbamboo_buildNumber=17\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_repository_46498241_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel\nbamboo_shortPlanKey=GTC\nbamboo_repository_46498241_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_buildTimeStamp=2025-02-07T00:00:10.226Z\nbamboo_repository_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_repository_46498241_git_branch=main\nbamboo_repository_git_branch=main\nbamboo_buildResultKey=JB-GTC-JOB1-17\nbamboo_repository_branch_name=main\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_7=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC --info eclipse jalviewjsCreateJ2sSettings jalviewjs\nbamboo_repository_name=Jalview Gitlab\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC clean getdown shadowJar\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=main\nbamboo_repository_46498241_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_branchDisplayName=main\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=main\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_46498241_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301535\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planKey=JB-GTC\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_8=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC getdown shadowJar\nbamboo_planRepository_1_branchName=main\n
build 07-Feb-2025 00:03:37 11/
build 07-Feb-2025 00:03:37 11/channel_launch-test-release.jvl
build 07-Feb-2025 00:03:37 11/install/
build 07-Feb-2025 00:03:37 11/install/build_properties
build 07-Feb-2025 00:03:37 11/install/getdown-launcher.jar
build 07-Feb-2025 00:03:37 11/install/getdown.txt
build 07-Feb-2025 00:03:37 11/digest2.txt
build 07-Feb-2025 00:03:37 11/channel.props
build 07-Feb-2025 00:03:37 11/getdown-launcher-new.jar
build 07-Feb-2025 00:03:37 11/alt/
build 07-Feb-2025 00:03:37 11/alt/Jmol-NO_LOG4J-14.31.53.jar
build 07-Feb-2025 00:03:37 11/alt/log4j-core-2.17.1.jar
build 07-Feb-2025 00:03:37 11/alt/groovy-ant-4.0.15.jar
build 07-Feb-2025 00:03:37 11/alt/apache-mime4j-0.6.jar
build 07-Feb-2025 00:03:37 11/alt/groovy-console-4.0.15.jar
build 07-Feb-2025 00:03:37 11/alt/axis.jar
build 07-Feb-2025 00:03:37 11/alt/groovy-nio-4.0.15.jar
build 07-Feb-2025 00:03:37 11/alt/javax.activation-api-1.2.0.jar
build 07-Feb-2025 00:03:37 11/alt/jaxb-runtime-2.3.2.jar
build 07-Feb-2025 00:03:37 11/alt/groovy-astbuilder-4.0.15.jar
build 07-Feb-2025 00:03:37 11/alt/commons-math3-3.6.1.jar
build 07-Feb-2025 00:03:37 11/alt/groovy-json-4.0.15.jar
build 07-Feb-2025 00:03:37 11/alt/httpclient-4.0.3.jar
build 07-Feb-2025 00:03:37 11/alt/jaxws-api-2.3.1.jar
build 07-Feb-2025 00:03:37 11/alt/saaj-impl.jar
build 07-Feb-2025 00:03:37 11/alt/mail-MODULE.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-groovydoc-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/httpcore-4.0.1.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-test-junit5-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/regex.jar
build 07-Feb-2025 00:03:38 11/alt/jetty-http-9.2.10.v20150310.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-macro-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/commons-discovery.jar
build 07-Feb-2025 00:03:38 11/alt/biojava-ontology-4.1.0.jar
build 07-Feb-2025 00:03:38 11/alt/jetty-io-9.2.10.v20150310.jar
build 07-Feb-2025 00:03:38 11/alt/istack-commons-runtime.jar
build 07-Feb-2025 00:03:38 11/alt/jersey-json-1.19.4.jar
build 07-Feb-2025 00:03:38 11/alt/gmbal-api-only-MODULE.jar
build 07-Feb-2025 00:03:38 11/alt/javax.xml.soap-api-1.4.0.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-testng-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-groovysh-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/commons-codec-1.3.jar
build 07-Feb-2025 00:03:38 11/alt/jetty-server-9.2.10.v20150310.jar
build 07-Feb-2025 00:03:38 11/alt/javaparser-core-3.25.5.jar
build 07-Feb-2025 00:03:38 11/alt/jfreesvg-3.4.3.jar
build 07-Feb-2025 00:03:38 11/alt/log4j-slf4j18-impl-2.17.1.jar
build 07-Feb-2025 00:03:38 11/alt/commons-logging-1.1.1.jar
build 07-Feb-2025 00:03:38 11/alt/slf4j-nop-1.7.36.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-sql-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/VARNAv3-93.jar
build 07-Feb-2025 00:03:38 11/alt/json-simple-1.1.1.jar
build 07-Feb-2025 00:03:38 11/alt/flatlaf-3.2.jar
build 07-Feb-2025 00:03:38 11/alt/FastInfoset.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-jsr223-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/javax.annotation-api-1.3.2.jar
build 07-Feb-2025 00:03:38 11/alt/javax.xml.rpc-api-1.1.2.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/jsoup-1.8.1.jar
build 07-Feb-2025 00:03:38 11/alt/biojava-core-4.1.0.jar
build 07-Feb-2025 00:03:38 11/alt/jaxb-api-2.3.1.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-cli-commons-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/jalview.jar
build 07-Feb-2025 00:03:38 11/alt/jersey-client-1.19.4.jar
build 07-Feb-2025 00:03:38 11/alt/javax.servlet-api-4.0.1.jar
build 07-Feb-2025 00:03:38 11/alt/policy-2.7.6.jar
build 07-Feb-2025 00:03:38 11/alt/xercesImpl.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-yaml-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/flatlaf-extras-3.2.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-typecheckers-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-xml-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-toml-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/jetty-util-9.2.10.v20150310.jar
build 07-Feb-2025 00:03:38 11/alt/slf4j-api-1.7.36.jar
build 07-Feb-2025 00:03:38 11/alt/jersey-core-1.19.4.jar
build 07-Feb-2025 00:03:38 11/alt/txw2-2.3.2.jar
build 07-Feb-2025 00:03:38 11/alt/jswingreader-0.3.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-ginq-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/groovy-templates-4.0.15.jar
build 07-Feb-2025 00:03:38 11/alt/intervalstore-v1.1.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-jmx-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/getdown-core.jar
build 07-Feb-2025 00:03:39 11/alt/jsr311-api-1.1.1.jar
build 07-Feb-2025 00:03:39 11/alt/jaxws-rt-java9.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-swing-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-macro-library-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/vamsas-client.jar
build 07-Feb-2025 00:03:39 11/alt/httpmime-4.0.3.jar
build 07-Feb-2025 00:03:39 11/alt/htsjdk-2.23.0.jar
build 07-Feb-2025 00:03:39 11/alt/stax-ex-1.8.1.jar
build 07-Feb-2025 00:03:39 11/alt/build_properties
build 07-Feb-2025 00:03:39 11/alt/groovy-docgenerator-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-cli-picocli-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/stax2-api-4.2.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-datetime-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/java-json.jar
build 07-Feb-2025 00:03:39 11/alt/log4j-api-2.17.1.jar
build 07-Feb-2025 00:03:39 11/alt/libquaqua-8.0.jnilib.jar
build 07-Feb-2025 00:03:39 11/alt/mimepull-1.9.11.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-contracts-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-test-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/jhall.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-servlet-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/jabaws-min-client-NO_LOG4J-2.2.1.jar
build 07-Feb-2025 00:03:39 11/alt/groovy-dateutil-4.0.15.jar
build 07-Feb-2025 00:03:39 11/alt/libquaqua64-8.0.jnilib.jar
build 07-Feb-2025 00:03:39 11/alt/miglayout-4.0-swing.jar
build 07-Feb-2025 00:03:39 11/alt/streambuffer-1.5.7.jar
build 07-Feb-2025 00:03:39 11/alt/javax.jws-api-1.1.jar
build 07-Feb-2025 00:03:39 11/alt/wsdl4j-1.6.3.jar
build 07-Feb-2025 00:03:39 11/resource/
build 07-Feb-2025 00:03:39 11/resource/jalview_test-release_getdown_background_error.png
build 07-Feb-2025 00:03:39 11/resource/jalview_test-release_getdown_background_initialising.png
build 07-Feb-2025 00:03:39 11/resource/jalview_test-release_logo.png
build 07-Feb-2025 00:03:39 11/resource/jalview_test-release_logo.icns
build 07-Feb-2025 00:03:39 11/resource/jalview_getdown_progress_bar.png
build 07-Feb-2025 00:03:39 11/resource/jalview_test-release_getdown_background.png
build 07-Feb-2025 00:03:39 11/resource/getdown-core.jar
build 07-Feb-2025 00:03:39 11/getdown-launcher.jar
build 07-Feb-2025 00:03:39 11/getdown.txt
build 07-Feb-2025 00:03:39 11/bin/
build 07-Feb-2025 00:03:39 11/bin/update.sh
build 07-Feb-2025 00:03:39 11/bin/jalview.ps1
build 07-Feb-2025 00:03:39 11/bin/update.ps1
build 07-Feb-2025 00:03:39 11/bin/jalview_test_update.ps1
build 07-Feb-2025 00:03:39 11/bin/jalview_test.ps1
build 07-Feb-2025 00:03:39 11/bin/jalview_test_update.bat
build 07-Feb-2025 00:03:39 11/bin/jalview_test.bat
build 07-Feb-2025 00:03:39 11/bin/jalview.sh
build 07-Feb-2025 00:03:39 11/digest.txt
build 07-Feb-2025 00:03:39 1.8/
build 07-Feb-2025 00:03:39 1.8/channel_launch-test-release.jvl
build 07-Feb-2025 00:03:39 1.8/install/
build 07-Feb-2025 00:03:39 1.8/install/build_properties
build 07-Feb-2025 00:03:39 1.8/install/getdown-launcher.jar
build 07-Feb-2025 00:03:39 1.8/install/getdown.txt
build 07-Feb-2025 00:03:39 1.8/digest2.txt
build 07-Feb-2025 00:03:39 1.8/channel.props
build 07-Feb-2025 00:03:39 1.8/getdown-launcher-new.jar
build 07-Feb-2025 00:03:39 1.8/alt/
build 07-Feb-2025 00:03:39 1.8/alt/Jmol-NO_LOG4J-14.31.53.jar
build 07-Feb-2025 00:03:39 1.8/alt/log4j-core-2.17.1.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-ant-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/apache-mime4j-0.6.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-console-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/axis.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-nio-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-astbuilder-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/commons-math3-3.6.1.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-json-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/httpclient-4.0.3.jar
build 07-Feb-2025 00:03:40 1.8/alt/jaxrpc.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-groovydoc-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/httpcore-4.0.1.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-test-junit5-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/regex.jar
build 07-Feb-2025 00:03:40 1.8/alt/jetty-http-9.2.10.v20150310.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-macro-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/commons-discovery.jar
build 07-Feb-2025 00:03:40 1.8/alt/biojava-ontology-4.1.0.jar
build 07-Feb-2025 00:03:40 1.8/alt/jetty-io-9.2.10.v20150310.jar
build 07-Feb-2025 00:03:40 1.8/alt/jersey-json-1.19.4.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-testng-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-groovysh-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/commons-codec-1.3.jar
build 07-Feb-2025 00:03:40 1.8/alt/jetty-server-9.2.10.v20150310.jar
build 07-Feb-2025 00:03:40 1.8/alt/javaparser-core-3.25.5.jar
build 07-Feb-2025 00:03:40 1.8/alt/jfreesvg-3.4.3.jar
build 07-Feb-2025 00:03:40 1.8/alt/log4j-slf4j18-impl-2.17.1.jar
build 07-Feb-2025 00:03:40 1.8/alt/commons-logging-1.1.1.jar
build 07-Feb-2025 00:03:40 1.8/alt/slf4j-nop-1.7.36.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-sql-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/VARNAv3-93.jar
build 07-Feb-2025 00:03:40 1.8/alt/json-simple-1.1.1.jar
build 07-Feb-2025 00:03:40 1.8/alt/flatlaf-3.2.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-jsr223-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/jsoup-1.8.1.jar
build 07-Feb-2025 00:03:40 1.8/alt/biojava-core-4.1.0.jar
build 07-Feb-2025 00:03:40 1.8/alt/groovy-cli-commons-4.0.15.jar
build 07-Feb-2025 00:03:40 1.8/alt/jalview.jar
build 07-Feb-2025 00:03:41 1.8/alt/wsdl4j.jar
build 07-Feb-2025 00:03:41 1.8/alt/jersey-client-1.19.4.jar
build 07-Feb-2025 00:03:41 1.8/alt/xercesImpl.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-yaml-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/flatlaf-extras-3.2.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-typecheckers-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/servlet-api-3.1.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-xml-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-toml-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/jetty-util-9.2.10.v20150310.jar
build 07-Feb-2025 00:03:41 1.8/alt/xml-apis.jar
build 07-Feb-2025 00:03:41 1.8/alt/slf4j-api-1.7.36.jar
build 07-Feb-2025 00:03:41 1.8/alt/jersey-core-1.19.4.jar
build 07-Feb-2025 00:03:41 1.8/alt/jswingreader-0.3.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-ginq-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-templates-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/activation.jar
build 07-Feb-2025 00:03:41 1.8/alt/intervalstore-v1.1.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-jmx-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/getdown-core.jar
build 07-Feb-2025 00:03:41 1.8/alt/jsr311-api-1.1.1.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-swing-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-macro-library-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/vamsas-client.jar
build 07-Feb-2025 00:03:41 1.8/alt/saaj.jar
build 07-Feb-2025 00:03:41 1.8/alt/httpmime-4.0.3.jar
build 07-Feb-2025 00:03:41 1.8/alt/htsjdk-2.23.0.jar
build 07-Feb-2025 00:03:41 1.8/alt/build_properties
build 07-Feb-2025 00:03:41 1.8/alt/groovy-docgenerator-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/mail.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-cli-picocli-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-datetime-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/java-json.jar
build 07-Feb-2025 00:03:41 1.8/alt/log4j-api-2.17.1.jar
build 07-Feb-2025 00:03:41 1.8/alt/libquaqua-8.0.jnilib.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-contracts-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-test-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/jhall.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-servlet-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/jabaws-min-client-NO_LOG4J-2.2.1.jar
build 07-Feb-2025 00:03:41 1.8/alt/groovy-dateutil-4.0.15.jar
build 07-Feb-2025 00:03:41 1.8/alt/libquaqua64-8.0.jnilib.jar
build 07-Feb-2025 00:03:41 1.8/alt/miglayout-4.0-swing.jar
build 07-Feb-2025 00:03:41 1.8/resource/
build 07-Feb-2025 00:03:41 1.8/resource/jalview_test-release_getdown_background_error.png
build 07-Feb-2025 00:03:41 1.8/resource/jalview_test-release_getdown_background_initialising.png
build 07-Feb-2025 00:03:41 1.8/resource/jalview_test-release_logo.png
build 07-Feb-2025 00:03:41 1.8/resource/jalview_test-release_logo.icns
build 07-Feb-2025 00:03:41 1.8/resource/jalview_getdown_progress_bar.png
build 07-Feb-2025 00:03:41 1.8/resource/jalview_test-release_getdown_background.png
build 07-Feb-2025 00:03:41 1.8/resource/getdown-core.jar
build 07-Feb-2025 00:03:41 1.8/getdown-launcher.jar
build 07-Feb-2025 00:03:41 1.8/getdown.txt
build 07-Feb-2025 00:03:41 1.8/bin/
build 07-Feb-2025 00:03:41 1.8/bin/update.sh
build 07-Feb-2025 00:03:41 1.8/bin/jalview.ps1
build 07-Feb-2025 00:03:41 1.8/bin/update.ps1
build 07-Feb-2025 00:03:41 1.8/bin/jalview_test_update.ps1
build 07-Feb-2025 00:03:41 1.8/bin/jalview_test.ps1
build 07-Feb-2025 00:03:41 1.8/bin/jalview_test_update.bat
build 07-Feb-2025 00:03:41 1.8/bin/jalview_test.bat
build 07-Feb-2025 00:03:41 1.8/bin/jalview.sh
build 07-Feb-2025 00:03:41 1.8/digest.txt
simple 07-Feb-2025 00:03:41 Finished task 'Create tar of getdown ${bamboo.CHANNEL} channel website' with result: Success
command 07-Feb-2025 00:03:41 Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
simple 07-Feb-2025 00:03:41 Starting task 'Create tar of DEVELOP channel executable jar' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command 07-Feb-2025 00:03:41 Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #17 (JB-GTC-JOB1-17)'\n ... running command line: \n/srv/bamboo/bamboo-home/temp/JB-GTC-JOB1-17-ScriptBuildTask-8457073670820926496.sh\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=main\nbamboo_repository_46498241_branch_name=main\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=main\nbamboo_repository_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_repository_46498241_name=Jalview Gitlab\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GTC-JOB1\nbamboo_shortPlanName=Getdown TEST_RELEASE Channel\nbamboo_planRepository_name=Jalview Gitlab\nbamboo_buildNumber=17\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_repository_46498241_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel\nbamboo_shortPlanKey=GTC\nbamboo_repository_46498241_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_buildTimeStamp=2025-02-07T00:00:10.226Z\nbamboo_repository_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_4=/srv/bamboo/bamboo-home/temp/JB-GTC-JOB1-17-ScriptBuildTask-5223154845727890113.sh\nbamboo_repository_46498241_git_branch=main\nbamboo_repository_git_branch=main\nbamboo_buildResultKey=JB-GTC-JOB1-17\nbamboo_repository_branch_name=main\nbamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_CHANNEL=TEST-RELEASE\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_7=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC --info eclipse jalviewjsCreateJ2sSettings jalviewjs\nbamboo_repository_name=Jalview Gitlab\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC clean getdown shadowJar\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=main\nbamboo_repository_46498241_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_branchDisplayName=main\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=main\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_46498241_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301535\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planKey=JB-GTC\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_8=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=1.8 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GTC getdown shadowJar\nbamboo_planRepository_1_branchName=main\n
build 07-Feb-2025 00:03:41 /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build
build 07-Feb-2025 00:03:41 executable_jar/
build 07-Feb-2025 00:03:41 executable_jar/jalview-all-2.11.4.1-test-j1.8.jar.sha256
build 07-Feb-2025 00:03:41 executable_jar/jalview-all-2.11.4.1-test-j11.jar.sha256
build 07-Feb-2025 00:03:41 executable_jar/jalview-all-2.11.4.1-test-j11.jar
build 07-Feb-2025 00:03:43 executable_jar/jalview-all-2.11.4.1-test-j1.8.jar
simple 07-Feb-2025 00:03:45 Finished task 'Create tar of DEVELOP channel executable jar' with result: Success
command 07-Feb-2025 00:03:45 Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE
simple 07-Feb-2025 00:03:45 Starting task 'create tar of JalviewJS site' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command 07-Feb-2025 00:03:45 Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #17 (JB-GTC-JOB1-17)'\n ... running command line: \n/srv/bamboo/bamboo-home/temp/JB-GTC-JOB1-17-ScriptBuildTask-2996947699426116465.sh\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=main\nbamboo_repository_46498241_branch_name=main\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=main\nbamboo_repository_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_repository_46498241_name=Jalview Gitlab\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GTC-JOB1\nbamboo_shortPlanName=Getdown TEST_RELEASE Channel\nbamboo_planRepository_name=Jalview Gitlab\nbamboo_buildNumber=17\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_repository_46498241_revision_number=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-17\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel\nbamboo_shortPlanKey=GTC\nbamboo_repository_46498241_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=a07a210e39b574048817742f680ad4bbcebb590c\nbamboo_buildTimeStamp=2025-02-07T00:00:10.226Z\nbamboo_repository_previous_revision_number=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_planRepository_previousRevision=74108b5332c0b49edc09570b36614c0ada40d3f2\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_5=/srv/bamboo/bamboo-home/temp/JB-GTC-JOB1-17-ScriptBuildTask-8457073670820926496.sh\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_4=/srv/bamboo/bamboo-home/temp/JB-GTC-JOB1-17-ScriptBuildTask-5223154845727890113.sh\nbamboo_repository_46498241_git_branch=main\nbamboo_repository_git_branch=main\nbamboo_buildResultKey=JB-GTC-JOB1-17\nbamboo_repository_branch_name=main\nbamboo_buildPlanName=Jalview Builds - 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build 07-Feb-2025 00:03:45 total 288
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 _
build 07-Feb-2025 00:03:45 -rw-r--r-- 1 bamboo bamboo 150 Feb 7 00:03 AmbiguityCodes.dat
build 07-Feb-2025 00:03:45 -rw-r--r-- 1 bamboo bamboo 474 Feb 7 00:03 authors.props
build 07-Feb-2025 00:03:45 -rw-r--r-- 1 bamboo bamboo 905 Feb 7 00:03 channel.props
build 07-Feb-2025 00:03:45 drwxr-xr-x 5 bamboo bamboo 4096 Feb 7 00:03 com
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 core
build 07-Feb-2025 00:03:45 drwxr-xr-x 3 bamboo bamboo 4096 Feb 7 00:03 darrylbu
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 default_images
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 _ES6
build 07-Feb-2025 00:03:45 drwxr-xr-x 4 bamboo bamboo 4096 Feb 7 00:03 ext
build 07-Feb-2025 00:03:45 drwxr-xr-x 3 bamboo bamboo 4096 Feb 7 00:03 fr
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 fts
build 07-Feb-2025 00:03:45 -rw-r--r-- 1 bamboo bamboo 15295 Feb 7 00:03 GeneticCodes.dat
build 07-Feb-2025 00:03:45 drwxr-xr-x 3 bamboo bamboo 4096 Feb 7 00:03 gnu
build 07-Feb-2025 00:03:45 drwxr-xr-x 3 bamboo bamboo 4096 Feb 7 00:03 gov
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 images
build 07-Feb-2025 00:03:45 drwxr-xr-x 5 bamboo bamboo 4096 Feb 7 00:03 intervalstore
build 07-Feb-2025 00:03:45 drwxr-xr-x 33 bamboo bamboo 4096 Feb 7 00:03 jalview
build 07-Feb-2025 00:03:45 drwxr-xr-x 15 bamboo bamboo 4096 Feb 7 00:03 java
build 07-Feb-2025 00:03:45 drwxr-xr-x 8 bamboo bamboo 4096 Feb 7 00:03 javajs
build 07-Feb-2025 00:03:45 drwxr-xr-x 11 bamboo bamboo 4096 Feb 7 00:03 javax
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 lang
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 mc_view
build 07-Feb-2025 00:03:45 drwxr-xr-x 3 bamboo bamboo 4096 Feb 7 00:03 net
build 07-Feb-2025 00:03:45 drwxr-xr-x 3 bamboo bamboo 4096 Feb 7 00:03 netscape
build 07-Feb-2025 00:03:45 drwxr-xr-x 12 bamboo bamboo 4096 Feb 7 00:03 org
build 07-Feb-2025 00:03:45 drwxr-xr-x 4 bamboo bamboo 4096 Feb 7 00:03 resources
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 scoreModel
build 07-Feb-2025 00:03:45 -rw-r--r-- 1 bamboo bamboo 144326 Feb 7 00:03 so-xp-simple.obo.zip
build 07-Feb-2025 00:03:45 drwxr-xr-x 15 bamboo bamboo 4096 Feb 7 00:03 sun
build 07-Feb-2025 00:03:45 drwxr-xr-x 10 bamboo bamboo 4096 Feb 7 00:03 swingjs
build 07-Feb-2025 00:03:45 drwxr-xr-x 3 bamboo bamboo 4096 Feb 7 00:03 uk
build 07-Feb-2025 00:03:45 drwxr-xr-x 3 bamboo bamboo 4096 Feb 7 00:03 vamsas
build 07-Feb-2025 00:03:45 drwxr-xr-x 2 bamboo bamboo 4096 Feb 7 00:03 _WASM
build 07-Feb-2025 00:03:45 Cloning into 'jalview-js'...
build 07-Feb-2025 00:03:49 jalview-js/
build 07-Feb-2025 00:03:49 jalview-js/com_stevesoft_pat_RegexWriter.html
build 07-Feb-2025 00:03:49 jalview-js/fr_orsay_lri_varna_applications_NussinovDesignDemo.html
build 07-Feb-2025 00:03:49 jalview-js/applets-nocore.html
build 07-Feb-2025 00:03:49 jalview-js/JalviewJS_jvexamplefile.html
build 07-Feb-2025 00:03:49 jalview-js/test-raf.txt
build 07-Feb-2025 00:03:49 jalview-js/fr_orsay_lri_varna_utils_TranslateFormatRNaseP.html
build 07-Feb-2025 00:03:49 jalview-js/fr_orsay_lri_varna_applications_VARNAcmd.html
build 07-Feb-2025 00:03:49 jalview-js/___j2sflags.htm
build 07-Feb-2025 00:03:49 jalview-js/jalview_bin_JalviewLiteURLRetrieve_applet.html
build 07-Feb-2025 00:03:49 jalview-js/jalview_bin_JalviewJS_embedded.html
build 07-Feb-2025 00:03:49 jalview-js/fr_orsay_lri_varna_applications_SuperpositionDemo.html
build 07-Feb-2025 00:03:49 jalview-js/jalview_bin_JalviewJS2.html
build 07-Feb-2025 00:03:49 jalview-js/fr_orsay_lri_varna_applications_VARNAGUI.html
build 07-Feb-2025 00:03:49 jalview-js/jalview_bin_Jalview.html
build 07-Feb-2025 00:03:49 jalview-js/fr_orsay_lri_varna_views_PrintTest.html
build 07-Feb-2025 00:03:49 jalview-js/.git/
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/prepare-commit-msg.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/applypatch-msg.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/pre-push.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/pre-applypatch.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/pre-rebase.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/update.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/pre-commit.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/commit-msg.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/hooks/post-update.sample
build 07-Feb-2025 00:03:49 jalview-js/.git/logs/
build 07-Feb-2025 00:03:49 jalview-js/.git/logs/HEAD
build 07-Feb-2025 00:03:49 jalview-js/.git/logs/refs/
build 07-Feb-2025 00:03:49 jalview-js/.git/logs/refs/heads/
build 07-Feb-2025 00:03:49 jalview-js/.git/logs/refs/heads/master
build 07-Feb-2025 00:03:49 jalview-js/.git/logs/refs/remotes/
build 07-Feb-2025 00:03:49 jalview-js/.git/logs/refs/remotes/origin/
build 07-Feb-2025 00:03:49 jalview-js/.git/logs/refs/remotes/origin/HEAD
build 07-Feb-2025 00:03:49 jalview-js/.git/HEAD
build 07-Feb-2025 00:03:49 jalview-js/.git/packed-refs
build 07-Feb-2025 00:03:49 jalview-js/.git/config
build 07-Feb-2025 00:03:49 jalview-js/.git/info/
build 07-Feb-2025 00:03:49 jalview-js/.git/info/exclude
build 07-Feb-2025 00:03:49 jalview-js/.git/index
build 07-Feb-2025 00:03:49 jalview-js/.git/refs/
build 07-Feb-2025 00:03:49 jalview-js/.git/refs/tags/
build 07-Feb-2025 00:03:49 jalview-js/.git/refs/heads/
build 07-Feb-2025 00:03:49 jalview-js/.git/refs/heads/master
build 07-Feb-2025 00:03:49 jalview-js/.git/refs/remotes/
build 07-Feb-2025 00:03:49 jalview-js/.git/refs/remotes/origin/
build 07-Feb-2025 00:03:49 jalview-js/.git/refs/remotes/origin/HEAD
build 07-Feb-2025 00:03:49 jalview-js/.git/description
build 07-Feb-2025 00:03:49 jalview-js/.git/branches/
build 07-Feb-2025 00:03:49 jalview-js/.git/objects/
build 07-Feb-2025 00:03:49 jalview-js/.git/objects/pack/
build 07-Feb-2025 00:03:49 jalview-js/.git/objects/pack/pack-8cdbb9461b4aac73296c0be08a90db133800de5c.idx
build 07-Feb-2025 00:03:49 jalview-js/.git/objects/pack/pack-8cdbb9461b4aac73296c0be08a90db133800de5c.pack
build 07-Feb-2025 00:03:51 jalview-js/.git/objects/info/
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_VARNA_applet.html
build 07-Feb-2025 00:03:51 jalview-js/JalviewJS.html
build 07-Feb-2025 00:03:51 jalview-js/jalview_bin_Jalview-stderr.html
build 07-Feb-2025 00:03:51 jalview-js/JalviewJS__stevesoft.html
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_applications_VARNAEditor.html
build 07-Feb-2025 00:03:51 jalview-js/JalviewJS_jalview.html
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_applications_VARNAConsoleDemo_applet.html
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_models_geom_LinesIntersect.html
build 07-Feb-2025 00:03:51 jalview-js/LICENSE
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_views_Imprimer.html
build 07-Feb-2025 00:03:51 jalview-js/jalview_bin_Launcher.html
build 07-Feb-2025 00:03:51 jalview-js/jalview_bin_JalviewJS_core.html
build 07-Feb-2025 00:03:51 jalview-js/README.md
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_applications_NussinovDemo.html
build 07-Feb-2025 00:03:51 jalview-js/css/
build 07-Feb-2025 00:03:51 jalview-js/css/ie6.css
build 07-Feb-2025 00:03:51 jalview-js/css/reset.css
build 07-Feb-2025 00:03:51 jalview-js/css/ie7.css
build 07-Feb-2025 00:03:51 jalview-js/css/style.css
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_models_templates_BatchBenchmark.html
build 07-Feb-2025 00:03:51 jalview-js/JalviewJS_embedded.html
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_applications_AlignmentDemo.html
build 07-Feb-2025 00:03:51 jalview-js/README.txt
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_applications_templateEditor_TemplateEditor.html
build 07-Feb-2025 00:03:51 jalview-js/fr_orsay_lri_varna_applications_VARNAOnlineDemo_applet.html
build 07-Feb-2025 00:03:51 jalview-js/_config.yml
build 07-Feb-2025 00:03:51 jalview-js/debug.log
build 07-Feb-2025 00:03:51 jalview-js/javascript/
build 07-Feb-2025 00:03:51 jalview-js/javascript/jshashtable-2.1.js
build 07-Feb-2025 00:03:51 jalview-js/javascript/facebox-1.3.js
build 07-Feb-2025 00:03:51 jalview-js/javascript/deployJava.js
build 07-Feb-2025 00:03:51 jalview-js/javascript/jvcontroller.js
build 07-Feb-2025 00:03:51 jalview-js/javascript/jquery.blockUI.js
build 07-Feb-2025 00:03:51 jalview-js/javascript/jalview.js
build 07-Feb-2025 00:03:51 jalview-js/javascript/jquery.timer.js
build 07-Feb-2025 00:03:51 jalview-js/javascript/jquery-1.4.4.min.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/swingjs2.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/j2sJQueryExt.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/devnotes.txt
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/j2sApplet.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/core/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/core/corebottom.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/core/coretop2.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/core/corebottom2.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/core/coretop.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/jquery.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/make.bat
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/SwingJSApplet.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/js/j2sClazz.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/php/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/php/jsmol.php
build 07-Feb-2025 00:03:51 jalview-js/swingjs/README.txt
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/_/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/_/JF.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/api/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/api/IntervalI.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/impl/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/impl/IntervalStore.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/impl/NCNode.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/impl/NCListBuilder.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/impl/BinarySearcher.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/impl/Range.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/README_SWINGJS.txt
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/nonc/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/nonc/IntervalStoreTest.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/nonc/IntervalStore.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/nonc/IntervalEndSorter.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/intervalstore/nonc/SimpleFeature.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/resources/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/resources/_WASM/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/resources/_WASM/wasi.esm.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/resources/_WASM/molfile_to_inchi.wasm
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/resources/_ES6/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/resources/_ES6/molfile-to-inchi.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/applet/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/applet/AudioClip.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/applet/JSApplet.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/applet/AppletStub.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/applet/AppletContext.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/util/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/util/FormatterClosedException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/util/Base64.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/util/function/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/util/function/ToLongFunction.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/util/function/LongUnaryOperator.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/time/chrono/IsoChronology.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/time/chrono/Chronology.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/time/chrono/ThaiBuddhistEra.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/time/chrono/MinguoChronology.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/time/chrono/JapaneseChronology.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/time/chrono/AbstractChronology.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/time/Instant.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/AllPermissionCollection.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/SignatureException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/SignedObject.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/PermissionCollection.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/DomainLoadStoreParameter.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/PolicySpi.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/KeyStore.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/MessageDigestSpi.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/UnresolvedPermissionCollection.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/IdentityScope.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/SecureClassLoader.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/BasicPermission.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/DigestInputStream.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/AlgorithmParameters.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/CryptoPrimitive.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/AlgorithmParameterGenerator.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/PermissionsEnumerator.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/acl/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/acl/NotOwnerException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/acl/Group.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/acl/AclNotFoundException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/acl/LastOwnerException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/acl/Owner.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/acl/AclEntry.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/acl/Acl.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/KeyRep.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/Identity.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/AccessControlException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/KeyFactorySpi.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/PermissionsHash.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/DigestException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/CodeSigner.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/SecureRandomSpi.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/ProviderException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/CodeSource.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/Signer.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/PrivilegedAction.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/KeyStoreSpi.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/PrivilegedExceptionAction.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/AlgorithmParameterGeneratorSpi.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/Policy.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/DigestOutputStream.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/SignatureSpi.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/URIParameter.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/CollectionCertStoreParameters.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/PKIXCertPathBuilderResult.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/CertificateParsingException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/CertSelector.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/CRLReason.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/CertPathHelperImpl.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/CertificateNotYetValidException.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/CertificateExpiredException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/PolicyQualifierInfo.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/X509CRLSelector.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/CertificateRevokedException.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/Extension.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/LDAPCertStoreParameters.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/X509CRL.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/TrustAnchor.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/cert/PKIXParameters.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/PrivateKey.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/KeyFactory.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/Permission.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/Timestamp.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/Signature.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/security/interfaces/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/beans/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/AclEntryFlag.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/FileStoreAttributeView.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/FileAttributeView.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/AclEntryType.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/FileAttribute.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/DosFileAttributeView.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/PosixFilePermission.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/PosixFilePermissions.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/PosixFileAttributeView.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/AclFileAttributeView.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/attribute/AclEntryPermission.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/ProviderMismatchException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/Watchable.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/CopyMoveHelper.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/NotDirectoryException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileAlreadyExistsException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/PathMatcher.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/Path.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/CopyOption.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/DirectoryStream.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/NotLinkException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/SecureDirectoryStream.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileSystemAlreadyExistsException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/WatchService.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/NoSuchFileException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileStore.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/InvalidPathException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileSystems.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/SimpleFileVisitor.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileVisitor.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/LinkOption.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/Paths.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileVisitResult.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/ProviderNotFoundException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/AccessDeniedException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileTreeWalker.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/StandardCopyOption.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileVisitOption.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/WatchKey.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/StandardWatchEventKinds.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/ClosedFileSystemException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/TempFileHelper.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileSystem.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/Files.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/DirectoryIteratorException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/ClosedWatchServiceException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileSystemException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/LinkPermission.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/AccessMode.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/ReadOnlyFileSystemException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/AtomicMoveNotSupportedException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/StandardOpenOption.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/file/FileTreeIterator.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/Bits.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/Buffer.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/MappedByteBuffer.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/ShortBuffer.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/Heap-X-Buffer.java.template
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/BufferOverflowException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/CharBufferSpliterator.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/ByteOrder.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/InvalidMarkException.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/IntBuffer.java.template
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/spi/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/spi/SelectorProvider.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/spi/AbstractSelectableChannel.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/spi/AbstractInterruptibleChannel.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/spi/AbstractSelectionKey.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/spi/AbstractSelector.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/FileChannel.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/FileLock.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/ServerSocketChannel.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/SelectableChannel.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/Pipe.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/AsynchronousChannel.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/MembershipKey.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/CompletionHandler.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/SelectionKey.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/NetworkChannel.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/AsynchronousFileChannel.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/DatagramChannel.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/exceptions
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/Selector.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/AsynchronousSocketChannel.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/java/nio/channels/Channel.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/netscape/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/_WASM/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/_WASM/README.TXT
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/imageio/stream/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/imageio/spi/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/imageio/plugins/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/imageio/plugins/common/StandardMetadataFormat.js
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/imageio/plugins/bmp/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/imageio/plugins/jpeg/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/com/sun/imageio/plugins/gif/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/no/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/no/CurrencyNames_no_NO.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/no/LocaleNames_no_NO_NY.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/CurrencyNames.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ca/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ca/CalendarData_ca.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ca/CurrencyNames_ca_ES.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ca/LocaleNames_ca.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/fi/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/fi/LocaleNames_fi.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/fi/CalendarData_fi.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/fi/CurrencyNames_fi_FI.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/hr/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/hr/LocaleNames_hr.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/hr/CurrencyNames_hr_HR.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/hr/CalendarData_hr.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/LocaleData.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/da/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/da/CalendarData_da.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/da/CurrencyNames_da_DK.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ro/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ro/CurrencyNames_ro_RO.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ro/LocaleNames_ro.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ro/CalendarData_ro.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/LocaleNamesBundle.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ru/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ru/CalendarData_ru.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ru/LocaleNames_ru.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_YE.properties
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_SD.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_EG.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_MA.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_SA.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_KW.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_IQ.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_LY.properties
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_TN.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_AE.properties
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_DZ.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CurrencyNames_ar_OM.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/LocaleNames_ar.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ar/CalendarData_ar.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ParallelListResourceBundle.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/be/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/be/LocaleNames_be.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/zh/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/zh/CurrencyNames_zh_CN.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/zh/LocaleNames_zh_SG.properties
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/zh/CurrencyNames_zh_TW.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/cs/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/cs/LocaleNames_cs.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/OpenListResourceBundle.js
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/CalendarData.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/pt/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/pt/CalendarData_pt_BR.properties
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/pt/CalendarData_pt.properties
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/pl/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/pl/LocaleNames_pl.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/sv/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/hu/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/hu/LocaleNames_hu.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/lt/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/lt/CalendarData_lt.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/bg/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/bg/CalendarData_bg.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/et/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/nl/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/de/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/sk/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/sk/CalendarData_sk.properties
build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/sq/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/ja/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/es/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/sun/util/resources/fr/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/jalview/ext/pymol/
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build 07-Feb-2025 00:03:51 jalview-js/swingjs/j2s/jalview/urls/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/stream/IIOByteBuffer.js
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/stream/ImageOutputStreamImpl.js
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/ImageTypeSpecifier.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/ImageWriteParam.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/ImageWriter.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/IIOImage.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/event/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/IIOParamController.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/IIOException.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/imageio/plugins/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/json/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/annotation/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/filechooser/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/tree/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/text/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/colorchooser/MainSwatchPanel.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/colorchooser/CenterLayout.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/colorchooser/ColorChooserComponentFactory.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/colorchooser/DefaultColorSelectionModel.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/colorchooser/SwatchPanel.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/ScrollPaneConstants.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/CellRendererPane.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/ColorTracker.js
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/JOptionPane.js
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/SwingPaintEventDispatcher.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/swing/plaf/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/net/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/sound/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/accessibility/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/print/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/print/attribute/UnmodifiableSetException.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/print/attribute/standard/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/xml/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/xml/bind/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/xml/bind/annotation/XmlSeeAlso.js
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/xml/bind/Unmarshaller.js
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/xml/bind/helpers/NotIdentifiableEventImpl.js
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/xml/bind/helpers/Messages.properties
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/xml/parsers/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/javax/xml/sax/demo/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/applications/NussinovDesignDemo.js
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/applications/fragseq/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/geom/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/export/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/naView/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/models/rna/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/factories/
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build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/README_SWINGJS.txt
build 07-Feb-2025 00:03:52 jalview-js/swingjs/j2s/fr/orsay/lri/varna/exceptions/
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build 07-Feb-2025 00:03:53 jalview-js/swingjs/j2s/org/jmol/adapter/readers/quantum/
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build 07-Feb-2025 00:03:53 jalview-js/swingjs/j2s/org/jmol/adapter/readers/molxyz/
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build 07-Feb-2025 00:03:53 jalview-js/swingjs/j2s/org/jmol/minimize/
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build 07-Feb-2025 00:03:53 jalview-js/swingjs/j2s/_ES6/
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build 07-Feb-2025 00:03:53 jalview-js/examples/uniref50.score_ascii
build 07-Feb-2025 00:03:53 jalview-js/examples/exampleFeatures.txt
build 07-Feb-2025 00:03:53 jalview-js/examples/1gaq.txt
build 07-Feb-2025 00:03:53 jalview-js/examples/plantfdx.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/3W5V.pdb
build 07-Feb-2025 00:03:53 jalview-js/examples/estrogenReceptorProtein.aln
build 07-Feb-2025 00:03:53 jalview-js/examples/plantfdx.features
build 07-Feb-2025 00:03:53 jalview-js/examples/estrogenReceptorCdna.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/estrogenReceptorCdna_aln.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/plantfdx.annotations
build 07-Feb-2025 00:03:53 jalview-js/examples/estrogenReceptorCdna_frag.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/estrogenReceptorProtein_frag.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/unfolded_RF00031.aln
build 07-Feb-2025 00:03:53 jalview-js/examples/estrogenReceptorProtein.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/estrogenReceptorProtein_aln.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/jaxbtest.jvx
build 07-Feb-2025 00:03:53 jalview-js/examples/rna_ss_test.stk
build 07-Feb-2025 00:03:53 jalview-js/examples/uniref50.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/2GIS.pdb
build 07-Feb-2025 00:03:53 jalview-js/examples/uniref50_mz.fa
build 07-Feb-2025 00:03:53 jalview-js/examples/example.json
build 07-Feb-2025 00:03:53 jalview-js/examples/jpred_msa.fasta
build 07-Feb-2025 00:03:53 jalview-js/examples/biojsonschema.json
build 07-Feb-2025 00:03:53 jalview-js/examples/ferredoxin.nw
build 07-Feb-2025 00:03:53 jalview-js/examples/exampleFile_2_7.jvp
build 07-Feb-2025 00:03:53 jalview-js/examples/dna_sequential.phy
build 07-Feb-2025 00:03:53 jalview-js/JalviewJS__jalview.html
build 07-Feb-2025 00:03:53 jalview-js/fr_orsay_lri_varna_applications_fragseq_FragSeqGUI.html
build 07-Feb-2025 00:03:53 jalview-js/jalview_embedded_example1.html
simple 07-Feb-2025 00:03:53 Finished task 'create tar of JalviewJS site' with result: Success
simple 07-Feb-2025 00:03:53 Running post build plugin 'NCover Results Collector'
simple 07-Feb-2025 00:03:53 Running post build plugin 'Artifact Copier'
simple 07-Feb-2025 00:03:53 Publishing an artifact: getdown_test-release_channel_tar
simple 07-Feb-2025 00:03:53 Finished publishing of artifact Shared artifact: [getdown_test-release_channel_tar], pattern: [**/getdown_*_website.tgz] anchored at: [build/website/docroot/getdown] in 325.3 ms
simple 07-Feb-2025 00:03:53 Publishing an artifact: test-release_channel_executable_jar
simple 07-Feb-2025 00:03:54 Finished publishing of artifact Shared artifact: [test-release_channel_executable_jar], pattern: [*_executable_jar.tgz] anchored at: [build] in 203.9 ms
simple 07-Feb-2025 00:03:54 Publishing an artifact: test-release_jalview-js-site_tar
simple 07-Feb-2025 00:03:54 Finished publishing of artifact Shared artifact: [test-release_jalview-js-site_tar], pattern: [*_jalview-js.tar.gz] anchored at: [build] in 208.4 ms
simple 07-Feb-2025 00:03:54 Running post build plugin 'Artifactory Release Management Staging'
simple 07-Feb-2025 00:03:54 Running post build plugin 'Artifactory Build Info Copier'
simple 07-Feb-2025 00:03:54 Running post build plugin 'Artifactory Gradle Properties Info Copier'
simple 07-Feb-2025 00:03:54 Running post build plugin 'npm Cache Cleanup'
simple 07-Feb-2025 00:03:54 Running post build plugin 'Clover Results Collector'
simple 07-Feb-2025 00:03:54 Running post build plugin 'Docker Container Cleanup'
simple 07-Feb-2025 00:03:54 Finalising the build...
simple 07-Feb-2025 00:03:54 Stopping timer.
simple 07-Feb-2025 00:03:54 Build JB-GTC-JOB1-17 completed.
simple 07-Feb-2025 00:03:54 Running on server: post build plugin 'NCover Results Collector'
simple 07-Feb-2025 00:03:54 Running on server: post build plugin 'Build Hanging Detection Configuration'
simple 07-Feb-2025 00:03:54 Running on server: post build plugin 'Clover Delta Calculator'
simple 07-Feb-2025 00:03:54 Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple 07-Feb-2025 00:03:54 All post build plugins have finished
simple 07-Feb-2025 00:03:54 Generating build results summary...
simple 07-Feb-2025 00:03:54 Saving build results to disk...
simple 07-Feb-2025 00:03:54 Logging substituted variables...
simple 07-Feb-2025 00:03:54 Indexing build results...
simple 07-Feb-2025 00:03:54 Finished building JB-GTC-JOB1-17.