simple 04-Jun-2026 15:41:30 Build Jalview Builds - Gradle JalviewJS Build - spike-na_hack_JAL-4673 - Default Job #7 (JB-GJB59-JOB1-7) started building on agent Default Agent simple 04-Jun-2026 15:41:30 simple 04-Jun-2026 15:41:30 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 simple 04-Jun-2026 15:41:30 Executing build Jalview Builds - Gradle JalviewJS Build - spike-na_hack_JAL-4673 - Default Job #7 (JB-GJB59-JOB1-7) simple 04-Jun-2026 15:41:30 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 04-Jun-2026 15:41:30 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 simple 04-Jun-2026 15:41:30 Updating source code to revision: 8120bc1d99b4cc4656f801b7355447e77cbecb61 simple 04-Jun-2026 15:41:30 Fetching 'refs/heads/spike/na_hack_JAL-4673' from 'https://gitlab.jalview.org/jalview/jalview.git'. simple 04-Jun-2026 15:41:30 Checking out revision 8120bc1d99b4cc4656f801b7355447e77cbecb61. simple 04-Jun-2026 15:41:31 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 simple 04-Jun-2026 15:41:31 c691200..8120bc1 spike/na_hack_JAL-4673 -> origin/spike/na_hack_JAL-4673 simple 04-Jun-2026 15:41:31 Already on 'spike/na_hack_JAL-4673' simple 04-Jun-2026 15:41:31 Your branch is behind 'origin/spike/na_hack_JAL-4673' by 1 commit, and can be fast-forwarded. simple 04-Jun-2026 15:41:31 (use "git pull" to update your local branch) simple 04-Jun-2026 15:41:31 HEAD is now at 8120bc1 JAL-4678 split out to its own testTask simple 04-Jun-2026 15:41:31 Updated source code to revision: 8120bc1d99b4cc4656f801b7355447e77cbecb61 simple 04-Jun-2026 15:41:31 Finished task 'Checkout Default Repository' with result: Success simple 04-Jun-2026 15:41:31 Running pre-build action: VCS Version Collector simple 04-Jun-2026 15:41:31 Running pre-build action: Artifactory Release Staging simple 04-Jun-2026 15:41:31 Starting task 'JalviewJS build site and distributable tar' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 04-Jun-2026 15:41:31 Bamboo Artifactory Plugin version: 2.6.2 command 04-Jun-2026 15:41:31 Beginning to execute external process for build 'Jalview Builds - Gradle JalviewJS Build - spike-na_hack_JAL-4673 - Default Job #7 (JB-GJB59-JOB1-7)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest --info clean eclipse jalviewjsCreateJ2sSettings jalviewjs jalviewjsSiteTar\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=spike/na_hack_JAL-4673\nbamboo_repository_48169062_branch_name=spike/na_hack_JAL-4673\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=spike/na_hack_JAL-4673\nbamboo_repository_revision_number=8120bc1d99b4cc4656f801b7355447e77cbecb61\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GJB59-JOB1-7\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GJB59-JOB1\nbamboo_repository_48169062_git_branch=spike/na_hack_JAL-4673\nbamboo_shortPlanName=spike-na_hack_JAL-4673\nbamboo_planRepository_name=Jalview Gitlab\nbamboo_repository_48169062_previous_revision_number=c69120010d6eb381a3001a73f16bd0f52af272b4\nLOGNAME=bamboo\nbamboo_buildNumber=7\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GJB59-JOB1-7\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_repository_48169062_git_username=\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle JalviewJS Build - spike-na_hack_JAL-4673\nbamboo_shortPlanKey=GJB59\nbamboo_shortJobKey=JOB1\nbamboo_repository_48169062_name=Jalview Gitlab\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=8120bc1d99b4cc4656f801b7355447e77cbecb61\nbamboo_buildTimeStamp=2026-06-04T15:32:06.121+01:00\nbamboo_repository_previous_revision_number=c69120010d6eb381a3001a73f16bd0f52af272b4\nbamboo_planRepository_previousRevision=c69120010d6eb381a3001a73f16bd0f52af272b4\nbamboo_repository_48169062_revision_number=8120bc1d99b4cc4656f801b7355447e77cbecb61\nbamboo_repository_git_branch=spike/na_hack_JAL-4673\nbamboo_buildResultKey=JB-GJB59-JOB1-7\nbamboo_repository_branch_name=spike/na_hack_JAL-4673\nbamboo_buildPlanName=Jalview Builds - Gradle JalviewJS Build - spike-na_hack_JAL-4673 - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=8120bc1d99b4cc4656f801b7355447e77cbecb61\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nbamboo_repository_48169062_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=spike/na_hack_JAL-4673\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=c69120010d6eb381a3001a73f16bd0f52af272b4\nbamboo_planRepository_branchDisplayName=spike/na_hack_JAL-4673\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=spike/na_hack_JAL-4673\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-47972555\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1\nbamboo_planKey=JB-GJB59\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=spike/na_hack_JAL-4673\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 04-Jun-2026 15:41:32 Initialized native services in: /srv/bamboo/home/bamboo/.gradle/native build 04-Jun-2026 15:41:32 Initialized jansi services in: /srv/bamboo/home/bamboo/.gradle/native build 04-Jun-2026 15:41:32 The client will now receive all logging from the daemon (pid: 16501). The daemon log file: /srv/bamboo/home/bamboo/.gradle/daemon/7.4.2/daemon-16501.out.log build 04-Jun-2026 15:41:32 Starting 11th build in daemon [uptime: 3 hrs 42 mins 23.096 secs, performance: 100%, GC rate: 0.00/s, heap usage: 43% of 512 MiB, non-heap usage: 39% of 256 MiB] build 04-Jun-2026 15:41:32 Using 4 worker leases. build 04-Jun-2026 15:41:32 Watching the file system is configured to be enabled if available build 04-Jun-2026 15:41:32 File system watching is inactive build 04-Jun-2026 15:41:32 Starting Build build 04-Jun-2026 15:41:32 Settings evaluated using settings file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/settings.gradle'. build 04-Jun-2026 15:41:32 Projects loaded. Root project using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build.gradle'. build 04-Jun-2026 15:41:32 Included projects: [root project 'jalview'] build 04-Jun-2026 15:41:32 Invalidating in-memory cache of /srv/bamboo/home/bamboo/.gradle/caches/journal-1/file-access.bin build 04-Jun-2026 15:41:33 build 04-Jun-2026 15:41:33 > Configure project : build 04-Jun-2026 15:41:33 Evaluating root project 'jalview' using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build.gradle'. build 04-Jun-2026 15:41:33 Invalidating in-memory cache of /srv/bamboo/home/bamboo/.gradle/caches/7.4.2/fileHashes/fileHashes.bin build 04-Jun-2026 15:41:33 Invalidating in-memory cache of /srv/bamboo/home/bamboo/.gradle/caches/7.4.2/fileHashes/resourceHashesCache.bin build 04-Jun-2026 15:41:33 Using properties from file './utils/channels/default/channel_gradle.properties' build 04-Jun-2026 15:41:33 JALVIEW_VERSION is set to '2.12.0' build 04-Jun-2026 15:41:33 HEADLESS BUILD build 04-Jun-2026 15:41:33 J2S ENABLED build 04-Jun-2026 15:41:33 Using a LOCAL profile. build 04-Jun-2026 15:41:33 file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/main/java', not found build 04-Jun-2026 15:41:33 file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/resources/doc_build', not found build 04-Jun-2026 15:41:33 file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/classes', not found build 04-Jun-2026 15:41:33 eclipseDir exists build 04-Jun-2026 15:41:33 All projects evaluated. build 04-Jun-2026 15:41:33 Selected primary task 'clean' from project : build 04-Jun-2026 15:41:33 Selected primary task 'eclipse' from project : build 04-Jun-2026 15:41:33 Selected primary task 'jalviewjsCreateJ2sSettings' from project : build 04-Jun-2026 15:41:33 Selected primary task 'jalviewjs' from project : build 04-Jun-2026 15:41:33 Selected primary task 'jalviewjsSiteTar' from project : build 04-Jun-2026 15:41:33 Tasks to be executed: [task ':clean', task ':eclipseClasspath', task ':eclipseJdt', task ':eclipseProject', task ':eclipse', task ':jalviewjsCreateJ2sSettings', task ':jalviewjsEclipsePaths', task ':jalviewjsEclipseCopyDropins', task ':jalviewjsSetEclipseWorkspace', task ':jalviewjsEclipseSetup', task ':jalviewjsEnableAltFileProperty', task ':eclipseSetup', task ':jalviewjsProjectImport', task ':jalviewjsTranspile', task ':jalviewjsCopyTransferSiteJs', task ':jalviewjsTransferUnzipLib', task ':jalviewjsTransferUnzipSwingJs', task ':jalviewjsTransferUnzipAllLibs', task ':jalviewjsSyncAllLibs', task ':copyResources', task ':createBuildProperties', task ':jalviewjsSyncBuildProperties', task ':jalviewjsBuildAllCores', task ':jalviewjsPublishCoreTemplates', task ':jalviewjsSyncCore', task ':copyChannelResources', task ':buildResources', task ':jalviewjsSyncResources', task ':jalviewjsSyncSiteResources', task ':jalviewjsPrepareSite', task ':jalviewjsBuildSite', task ':cleanJalviewjsChromiumUserDir', task ':jalviewjsChromiumProfile', task ':jalviewjsCopyStderrLaunchFile', task ':jalviewjsLaunchTest', task ':jalviewjs', task ':jalviewjsSiteTar'] build 04-Jun-2026 15:41:33 Tasks that were excluded: [] build 04-Jun-2026 15:41:33 :clean (Thread[Execution worker for ':',5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :clean build 04-Jun-2026 15:41:34 Caching disabled for task ':clean' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Task ':clean' is not up-to-date because: build 04-Jun-2026 15:41:34 Task has not declared any outputs despite executing actions. build 04-Jun-2026 15:41:34 :clean (Thread[Execution worker for ':',5,main]) completed. Took 0.821 secs. build 04-Jun-2026 15:41:34 :jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :jalviewjsEclipsePaths build 04-Jun-2026 15:41:34 Caching disabled for task ':jalviewjsEclipsePaths' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Task ':jalviewjsEclipsePaths' is not up-to-date because: build 04-Jun-2026 15:41:34 Task has not declared any outputs despite executing actions. build 04-Jun-2026 15:41:34 Running task jalviewjsEclipsePaths as IN_ECLIPSE=false build 04-Jun-2026 15:41:34 ECLIPSE VERSION=4.28.0 build 04-Jun-2026 15:41:34 :jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs. build 04-Jun-2026 15:41:34 destroyer locations for task group 0 (Thread[Execution worker for ':',5,main]) started. build 04-Jun-2026 15:41:34 destroyer locations for task group 0 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:41:34 :eclipseClasspath (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :eclipseClasspath build 04-Jun-2026 15:41:34 Caching disabled for task ':eclipseClasspath' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Task ':eclipseClasspath' is not up-to-date because: build 04-Jun-2026 15:41:34 Task.upToDateWhen is false. build 04-Jun-2026 15:41:34 :eclipseClasspath (Thread[included builds,5,main]) completed. Took 0.042 secs. build 04-Jun-2026 15:41:34 :eclipseJdt (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :eclipseJdt build 04-Jun-2026 15:41:34 Caching disabled for task ':eclipseJdt' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Task ':eclipseJdt' is not up-to-date because: build 04-Jun-2026 15:41:34 Task.upToDateWhen is false. build 04-Jun-2026 15:41:34 :eclipseJdt (Thread[included builds,5,main]) completed. Took 0.013 secs. build 04-Jun-2026 15:41:34 :eclipseProject (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :eclipseProject build 04-Jun-2026 15:41:34 Caching disabled for task ':eclipseProject' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Task ':eclipseProject' is not up-to-date because: build 04-Jun-2026 15:41:34 Task.upToDateWhen is false. build 04-Jun-2026 15:41:34 :eclipseProject (Thread[included builds,5,main]) completed. Took 0.003 secs. build 04-Jun-2026 15:41:34 :eclipse (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :eclipse build 04-Jun-2026 15:41:34 Skipping task ':eclipse' as it has no actions. build 04-Jun-2026 15:41:34 :eclipse (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:41:34 :jalviewjsCreateJ2sSettings (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :jalviewjsCreateJ2sSettings build 04-Jun-2026 15:41:34 Caching disabled for task ':jalviewjsCreateJ2sSettings' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Task ':jalviewjsCreateJ2sSettings' is not up-to-date because: build 04-Jun-2026 15:41:34 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/config/j2s has been removed. build 04-Jun-2026 15:41:34 Output property 'outputFile' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/config/j2s has been removed. build 04-Jun-2026 15:41:34 :jalviewjsCreateJ2sSettings (Thread[included builds,5,main]) completed. Took 0.001 secs. build 04-Jun-2026 15:41:34 :jalviewjsEclipseCopyDropins (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :jalviewjsEclipseCopyDropins build 04-Jun-2026 15:41:34 Caching disabled for task ':jalviewjsEclipseCopyDropins' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Task ':jalviewjsEclipseCopyDropins' is not up-to-date because: build 04-Jun-2026 15:41:34 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/eclipse_dropins has been removed. build 04-Jun-2026 15:41:34 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/eclipse_dropins/com.seeq.eclipse.importprojects.jar has been removed. build 04-Jun-2026 15:41:34 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/eclipse_dropins/net.sf.j2s.core-j11.jar has been removed. build 04-Jun-2026 15:41:34 :jalviewjsEclipseCopyDropins (Thread[included builds,5,main]) completed. Took 0.005 secs. build 04-Jun-2026 15:41:34 :jalviewjsSetEclipseWorkspace (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :jalviewjsSetEclipseWorkspace build 04-Jun-2026 15:41:34 Caching disabled for task ':jalviewjsSetEclipseWorkspace' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Task ':jalviewjsSetEclipseWorkspace' is not up-to-date because: build 04-Jun-2026 15:41:34 Task.upToDateWhen is false. build 04-Jun-2026 15:41:34 Running task jalviewjsSetEclipseWorkspace as IN_ECLIPSE=false build 04-Jun-2026 15:41:34 NEW ECLIPSE WORKSPACE: /tmp/groovy-generated-tmpdir-7299169021675173558 build 04-Jun-2026 15:41:34 :jalviewjsSetEclipseWorkspace (Thread[included builds,5,main]) completed. Took 0.004 secs. build 04-Jun-2026 15:41:34 :jalviewjsEclipseSetup (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :jalviewjsEclipseSetup build 04-Jun-2026 15:41:34 Skipping task ':jalviewjsEclipseSetup' as it has no actions. build 04-Jun-2026 15:41:34 :jalviewjsEclipseSetup (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:41:34 :jalviewjsEnableAltFileProperty (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :jalviewjsEnableAltFileProperty UP-TO-DATE build 04-Jun-2026 15:41:34 Caching disabled for task ':jalviewjsEnableAltFileProperty' because: build 04-Jun-2026 15:41:34 Build cache is disabled build 04-Jun-2026 15:41:34 Skipping task ':jalviewjsEnableAltFileProperty' as it is up-to-date. build 04-Jun-2026 15:41:34 :jalviewjsEnableAltFileProperty (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:41:34 :eclipseSetup (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:34 build 04-Jun-2026 15:41:34 > Task :eclipseSetup build 04-Jun-2026 15:41:34 Skipping task ':eclipseSetup' as it has no actions. build 04-Jun-2026 15:41:34 :eclipseSetup (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:41:34 :jalviewjsProjectImport (Thread[included builds,5,main]) started. build 04-Jun-2026 15:41:36 build 04-Jun-2026 15:41:36 > Task :jalviewjsProjectImport build 04-Jun-2026 15:41:36 Caching disabled for task ':jalviewjsProjectImport' because: build 04-Jun-2026 15:41:36 Build cache is disabled build 04-Jun-2026 15:41:36 Task ':jalviewjsProjectImport' is not up-to-date because: build 04-Jun-2026 15:41:36 Task.upToDateWhen is false. build 04-Jun-2026 15:41:36 Running task jalviewjsProjectImport as IN_ECLIPSE=false build 04-Jun-2026 15:41:36 Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application com.seeq.eclipse.importprojects.headlessimport -data /tmp/groovy-generated-tmpdir-7299169021675173558 -import /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s build 04-Jun-2026 15:41:36 Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse'' error 04-Jun-2026 15:41:36 SLF4J: No SLF4J providers were found. error 04-Jun-2026 15:41:36 SLF4J: Defaulting to no-operation (NOP) logger implementation error 04-Jun-2026 15:41:36 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details. build 04-Jun-2026 15:42:15 :jalviewjsProjectImport (Thread[included builds,5,main]) completed. Took 41.607 secs. build 04-Jun-2026 15:42:15 :jalviewjsTranspile (Thread[included builds,5,main]) started. build 04-Jun-2026 15:42:17 build 04-Jun-2026 15:42:17 > Task :jalviewjsTranspile build 04-Jun-2026 15:42:17 Caching disabled for task ':jalviewjsTranspile' because: build 04-Jun-2026 15:42:17 Build cache is disabled build 04-Jun-2026 15:42:17 Task ':jalviewjsTranspile' is not up-to-date because: build 04-Jun-2026 15:42:17 Task.upToDateWhen is false. build 04-Jun-2026 15:42:17 Running task jalviewjsTranspile as IN_ECLIPSE=false build 04-Jun-2026 15:42:17 Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application org.eclipse.jdt.apt.core.aptBuild -data /tmp/groovy-generated-tmpdir-7299169021675173558 -cleanBuild jalview --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s build 04-Jun-2026 15:42:17 Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse'' error 04-Jun-2026 15:42:17 SLF4J: No SLF4J providers were found. error 04-Jun-2026 15:42:17 SLF4J: Defaulting to no-operation (NOP) logger implementation error 04-Jun-2026 15:42:17 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details. build 04-Jun-2026 15:42:18 Invoking 'Java Builder' on '/jalview'. build 04-Jun-2026 15:42:18 net.sf.j2s.core.3.3.1/3.3.1-v1 started build 04-Jun-2026 15:42:18 J2S CompilationParticipant started build 04-Jun-2026 15:42:18 J2S isActive true /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 build 04-Jun-2026 15:42:18 J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 build 04-Jun-2026 15:42:19 J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 build 04-Jun-2026 15:42:19 Cleaning output folder for jalview build 04-Jun-2026 15:42:19 Build done build 04-Jun-2026 15:42:19 Invoking 'Gradle Project Builder' on '/jalview'. build 04-Jun-2026 15:42:19 Invoking 'Java Builder' on '/jalview'. build 04-Jun-2026 15:42:19 J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 build 04-Jun-2026 15:42:19 Preparing to build jalview build 04-Jun-2026 15:42:19 Cleaning output folder for jalview build 04-Jun-2026 15:42:19 J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 build 04-Jun-2026 15:42:19 Copying resources to the output folder build 04-Jun-2026 15:42:19 Analyzing sources build 04-Jun-2026 15:42:19 J2S buildStarting 1259 files, contexts.size() = 1, isBatch=true build 04-Jun-2026 15:42:19 Compiling jalview/src/com/github/reinert/jjschema build 04-Jun-2026 15:42:21 Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 1 warning) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 2 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 3 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 4 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 5 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 9 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 12 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 13 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 14 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 15 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 37 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 38 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 46 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 47 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 48 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 49 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 50 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 51 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 52 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 59 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:21 (Found 63 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 67 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 69 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 89 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 90 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 91 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 98 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 108 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 113 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 114 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 115 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 119 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 120 warnings) Compiling jalview/src/com/stevesoft/pat build 04-Jun-2026 15:42:22 (Found 120 warnings) Compiling jalview/src/com/stevesoft/pat/wrap build 04-Jun-2026 15:42:22 (Found 124 warnings) Compiling jalview/src/darrylbu/util build 04-Jun-2026 15:42:22 (Found 124 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2 build 04-Jun-2026 15:42:22 (Found 126 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2 build 04-Jun-2026 15:42:22 (Found 135 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2 build 04-Jun-2026 15:42:22 (Found 138 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2/port build 04-Jun-2026 15:42:22 (Found 138 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 145 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 152 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 190 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 197 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 253 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 285 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 292 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 360 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 363 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 366 warnings) Compiling jalview/src/ext/vamsas build 04-Jun-2026 15:42:22 (Found 367 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 372 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 375 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 383 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 388 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 423 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 432 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 433 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 434 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 435 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 436 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 437 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 438 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 439 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 446 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 455 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 459 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 463 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 464 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 466 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:22 (Found 501 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:23 (Found 567 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:23 (Found 568 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:23 (Found 574 warnings) Compiling jalview/src/jalview/analysis build 04-Jun-2026 15:42:23 (Found 574 warnings) Compiling jalview/src/jalview/analysis/scoremodels build 04-Jun-2026 15:42:23 (Found 577 warnings) Compiling jalview/src/jalview/analysis/scoremodels build 04-Jun-2026 15:42:23 (Found 587 warnings) Compiling jalview/src/jalview/analytics build 04-Jun-2026 15:42:23 (Found 587 warnings) Compiling jalview/src/jalview/api build 04-Jun-2026 15:42:23 (Found 588 warnings) Compiling jalview/src/jalview/api build 04-Jun-2026 15:42:23 (Found 590 warnings) Compiling jalview/src/jalview/api build 04-Jun-2026 15:42:23 (Found 590 warnings) Compiling jalview/src/jalview/api/analysis build 04-Jun-2026 15:42:23 (Found 591 warnings) Compiling jalview/src/jalview/api/structures build 04-Jun-2026 15:42:23 (Found 594 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 654 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 663 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 664 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 669 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 670 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 682 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 693 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 695 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 700 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 701 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 702 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 703 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 706 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 708 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 709 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 711 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 712 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 718 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 719 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 720 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 722 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 726 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 728 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 736 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 746 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 749 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 750 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 751 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 754 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 755 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 759 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 762 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 765 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 803 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 805 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 806 warnings) Compiling jalview/src/jalview/appletgui build 04-Jun-2026 15:42:23 (Found 1 error + 815 warnings) Compiling jalview/src/jalview/appletgui/js build 04-Jun-2026 15:42:23 (Found 1 error + 820 warnings) Compiling jalview/src/jalview/appletgui/js build 04-Jun-2026 15:42:23 (Found 1 error + 820 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:23 (Found 1 error + 824 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:23 (Found 1 error + 826 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:23 (Found 1 error + 827 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:23 (Found 1 error + 835 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:23 (Found 1 error + 837 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:24 (Found 1 error + 839 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:24 (Found 4 errors + 897 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:24 (Found 4 errors + 902 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:24 (Found 4 errors + 904 warnings) Compiling jalview/src/jalview/bin build 04-Jun-2026 15:42:24 (Found 4 errors + 904 warnings) Compiling jalview/src/jalview/bin/argparser build 04-Jun-2026 15:42:24 (Found 4 errors + 905 warnings) Compiling jalview/src/jalview/bin/argparser build 04-Jun-2026 15:42:24 (Found 4 errors + 907 warnings) Compiling jalview/src/jalview/bin/argparser build 04-Jun-2026 15:42:24 (Found 4 errors + 908 warnings) Compiling jalview/src/jalview/bin/argparser build 04-Jun-2026 15:42:24 (Found 4 errors + 908 warnings) Compiling jalview/src/jalview/bin/groovy build 04-Jun-2026 15:42:24 (Found 4 errors + 908 warnings) Compiling jalview/src/jalview/commands build 04-Jun-2026 15:42:24 (Found 4 errors + 908 warnings) Compiling jalview/src/jalview/controller build 04-Jun-2026 15:42:24 (Found 4 errors + 908 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 921 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 924 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 925 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 928 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 929 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 930 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 936 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 940 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 942 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 943 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 944 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 945 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 950 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 951 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 959 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 960 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 961 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 964 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 969 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 973 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 977 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 980 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 981 warnings) Compiling jalview/src/jalview/datamodel build 04-Jun-2026 15:42:24 (Found 4 errors + 982 warnings) Compiling jalview/src/jalview/datamodel/annotations build 04-Jun-2026 15:42:24 (Found 4 errors + 982 warnings) Compiling jalview/src/jalview/datamodel/features build 04-Jun-2026 15:42:24 (Found 4 errors + 982 warnings) Compiling jalview/src/jalview/datamodel/rna build 04-Jun-2026 15:42:24 (Found 4 errors + 984 warnings) Compiling jalview/src/jalview/datamodel/rna build 04-Jun-2026 15:42:24 (Found 4 errors + 984 warnings) Compiling jalview/src/jalview/exceptions build 04-Jun-2026 15:42:24 (Found 4 errors + 984 warnings) Compiling jalview/src/jalview/ext/android build 04-Jun-2026 15:42:24 (Found 4 errors + 984 warnings) Compiling jalview/src/jalview/ext/ensembl build 04-Jun-2026 15:42:24 (Found 4 errors + 986 warnings) Compiling jalview/src/jalview/ext/ensembl build 04-Jun-2026 15:42:24 (Found 4 errors + 987 warnings) Compiling jalview/src/jalview/ext/ensembl build 04-Jun-2026 15:42:24 (Found 4 errors + 990 warnings) Compiling jalview/src/jalview/ext/htsjdk build 04-Jun-2026 15:42:24 (Found 4 errors + 991 warnings) Compiling jalview/src/jalview/ext/htsjdk build 04-Jun-2026 15:42:24 (Found 4 errors + 997 warnings) Compiling jalview/src/jalview/ext/jmol build 04-Jun-2026 15:42:24 (Found 4 errors + 1001 warnings) Compiling jalview/src/jalview/ext/paradise build 04-Jun-2026 15:42:24 (Found 4 errors + 1001 warnings) Compiling jalview/src/jalview/ext/pymol build 04-Jun-2026 15:42:24 (Found 4 errors + 1003 warnings) Compiling jalview/src/jalview/ext/pymol build 04-Jun-2026 15:42:24 (Found 4 errors + 1003 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera build 04-Jun-2026 15:42:24 (Found 4 errors + 1004 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera build 04-Jun-2026 15:42:24 (Found 4 errors + 1005 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera build 04-Jun-2026 15:42:24 (Found 4 errors + 1005 warnings) Compiling jalview/src/jalview/ext/so build 04-Jun-2026 15:42:24 (Found 4 errors + 1005 warnings) Compiling jalview/src/jalview/ext/varna build 04-Jun-2026 15:42:24 (Found 4 errors + 1005 warnings) Compiling jalview/src/jalview/fts/api build 04-Jun-2026 15:42:24 (Found 4 errors + 1006 warnings) Compiling jalview/src/jalview/fts/api build 04-Jun-2026 15:42:24 (Found 4 errors + 1007 warnings) Compiling jalview/src/jalview/fts/core build 04-Jun-2026 15:42:24 (Found 4 errors + 1010 warnings) Compiling jalview/src/jalview/fts/core build 04-Jun-2026 15:42:24 (Found 4 errors + 1011 warnings) Compiling jalview/src/jalview/fts/core build 04-Jun-2026 15:42:24 (Found 4 errors + 1012 warnings) Compiling jalview/src/jalview/fts/core build 04-Jun-2026 15:42:24 (Found 4 errors + 1012 warnings) Compiling jalview/src/jalview/fts/service/alphafold build 04-Jun-2026 15:42:24 (Found 4 errors + 1012 warnings) Compiling jalview/src/jalview/fts/service/pdb build 04-Jun-2026 15:42:24 (Found 4 errors + 1020 warnings) Compiling jalview/src/jalview/fts/service/pdb build 04-Jun-2026 15:42:24 (Found 4 errors + 1020 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons build 04-Jun-2026 15:42:24 (Found 4 errors + 1022 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons build 04-Jun-2026 15:42:24 (Found 4 errors + 1026 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons build 04-Jun-2026 15:42:24 (Found 4 errors + 1031 warnings) Compiling jalview/src/jalview/fts/service/uniprot build 04-Jun-2026 15:42:24 (Found 4 errors + 1031 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1038 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1054 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1056 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1057 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1058 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1059 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1079 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1088 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1091 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1092 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1093 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1102 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1103 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1133 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1135 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1137 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1138 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1139 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1144 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1147 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1148 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1155 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1156 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1160 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1165 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1166 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1168 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1169 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1170 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1172 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1173 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1179 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1180 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1181 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1182 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1183 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1185 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1186 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1188 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1190 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1195 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1198 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:25 (Found 4 errors + 1206 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1209 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1211 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1212 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1213 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1216 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1220 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1228 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1237 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1241 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1242 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1244 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1246 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1247 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1250 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1251 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1259 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1265 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1267 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1268 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1328 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1338 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1339 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1368 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1371 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1378 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1384 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1398 warnings) Compiling jalview/src/jalview/gui build 04-Jun-2026 15:42:26 (Found 4 errors + 1400 warnings) Compiling jalview/src/jalview/gui/structurechooser build 04-Jun-2026 15:42:26 (Found 4 errors + 1402 warnings) Compiling jalview/src/jalview/gui/structurechooser build 04-Jun-2026 15:42:26 (Found 4 errors + 1407 warnings) Compiling jalview/src/jalview/gui/structurechooser build 04-Jun-2026 15:42:26 (Found 4 errors + 1409 warnings) Compiling jalview/src/jalview/hmmer build 04-Jun-2026 15:42:26 (Found 4 errors + 1412 warnings) Compiling jalview/src/jalview/hmmer build 04-Jun-2026 15:42:26 (Found 4 errors + 1419 warnings) Compiling jalview/src/jalview/hmmer build 04-Jun-2026 15:42:26 (Found 4 errors + 1420 warnings) Compiling jalview/src/jalview/hmmer build 04-Jun-2026 15:42:26 (Found 4 errors + 1422 warnings) Compiling jalview/src/jalview/hmmer build 04-Jun-2026 15:42:26 (Found 4 errors + 1424 warnings) Compiling jalview/src/jalview/hmmer build 04-Jun-2026 15:42:26 (Found 4 errors + 1428 warnings) Compiling jalview/src/jalview/hmmer build 04-Jun-2026 15:42:26 (Found 4 errors + 1428 warnings) Compiling jalview/src/jalview/httpserver build 04-Jun-2026 15:42:26 (Found 4 errors + 1428 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1433 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1435 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1456 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1458 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1460 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1461 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1465 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1468 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1469 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1470 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1473 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1474 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1475 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1513 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1516 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1518 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1520 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1540 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1571 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1573 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1575 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1576 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1577 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:26 (Found 4 errors + 1590 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:27 (Found 4 errors + 1650 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:27 (Found 4 errors + 1651 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:27 (Found 4 errors + 1652 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:27 (Found 4 errors + 1745 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:27 (Found 4 errors + 1750 warnings) Compiling jalview/src/jalview/io build 04-Jun-2026 15:42:27 (Found 4 errors + 1750 warnings) Compiling jalview/src/jalview/io/cache build 04-Jun-2026 15:42:27 (Found 4 errors + 1751 warnings) Compiling jalview/src/jalview/io/exceptions build 04-Jun-2026 15:42:27 (Found 4 errors + 1751 warnings) Compiling jalview/src/jalview/io/gff build 04-Jun-2026 15:42:27 (Found 4 errors + 1752 warnings) Compiling jalview/src/jalview/io/gff build 04-Jun-2026 15:42:27 (Found 4 errors + 1752 warnings) Compiling jalview/src/jalview/io/packed build 04-Jun-2026 15:42:27 (Found 4 errors + 1756 warnings) Compiling jalview/src/jalview/io/packed build 04-Jun-2026 15:42:27 (Found 4 errors + 1757 warnings) Compiling jalview/src/jalview/io/packed build 04-Jun-2026 15:42:27 (Found 4 errors + 1757 warnings) Compiling jalview/src/jalview/io/vamsas build 04-Jun-2026 15:42:27 (Found 4 errors + 1775 warnings) Compiling jalview/src/jalview/io/vamsas build 04-Jun-2026 15:42:27 (Found 4 errors + 1786 warnings) Compiling jalview/src/jalview/io/vamsas build 04-Jun-2026 15:42:27 (Found 4 errors + 1787 warnings) Compiling jalview/src/jalview/io/vamsas build 04-Jun-2026 15:42:27 (Found 4 errors + 1800 warnings) Compiling jalview/src/jalview/io/vamsas build 04-Jun-2026 15:42:27 (Found 4 errors + 1804 warnings) Compiling jalview/src/jalview/io/vamsas build 04-Jun-2026 15:42:27 (Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/io/vamsas build 04-Jun-2026 15:42:27 (Found 4 errors + 1833 warnings) Compiling jalview/src/jalview/io/vamsas build 04-Jun-2026 15:42:27 (Found 4 errors + 1836 warnings) Compiling jalview/src/jalview/io/vcf build 04-Jun-2026 15:42:27 (Found 4 errors + 1837 warnings) Compiling jalview/src/jalview/javascript/json build 04-Jun-2026 15:42:27 (Found 4 errors + 1837 warnings) Compiling jalview/src/jalview/javascript/web build 04-Jun-2026 15:42:27 (Found 4 errors + 1838 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1839 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1840 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1841 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1842 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1845 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1846 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1847 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1848 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1849 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1852 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1854 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1862 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1863 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1864 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1869 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1871 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1872 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1873 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1876 warnings) Compiling jalview/src/jalview/jbgui build 04-Jun-2026 15:42:27 (Found 4 errors + 1876 warnings) Compiling jalview/src/jalview/json/binding/biojs build 04-Jun-2026 15:42:27 (Found 4 errors + 1876 warnings) Compiling jalview/src/jalview/json/binding/biojson/v1 build 04-Jun-2026 15:42:27 (Found 4 errors + 1879 warnings) Compiling jalview/src/jalview/log build 04-Jun-2026 15:42:27 (Found 4 errors + 1881 warnings) Compiling jalview/src/jalview/log build 04-Jun-2026 15:42:27 (Found 4 errors + 1882 warnings) Compiling jalview/src/jalview/log build 04-Jun-2026 15:42:27 (Found 4 errors + 1882 warnings) Compiling jalview/src/jalview/math build 04-Jun-2026 15:42:27 (Found 4 errors + 1883 warnings) Compiling jalview/src/jalview/math build 04-Jun-2026 15:42:27 (Found 4 errors + 1884 warnings) Compiling jalview/src/jalview/math build 04-Jun-2026 15:42:27 (Found 4 errors + 1917 warnings) Compiling jalview/src/jalview/project build 04-Jun-2026 15:42:27 (Found 4 errors + 1919 warnings) Compiling jalview/src/jalview/renderer build 04-Jun-2026 15:42:27 (Found 4 errors + 1920 warnings) Compiling jalview/src/jalview/renderer build 04-Jun-2026 15:42:27 (Found 4 errors + 1920 warnings) Compiling jalview/src/jalview/renderer/api build 04-Jun-2026 15:42:27 (Found 4 errors + 1920 warnings) Compiling jalview/src/jalview/renderer/seqfeatures build 04-Jun-2026 15:42:27 (Found 4 errors + 1920 warnings) Compiling jalview/src/jalview/rest build 04-Jun-2026 15:42:27 (Found 4 errors + 1920 warnings) Compiling jalview/src/jalview/schemes build 04-Jun-2026 15:42:27 (Found 4 errors + 1923 warnings) Compiling jalview/src/jalview/schemes build 04-Jun-2026 15:42:27 (Found 4 errors + 1925 warnings) Compiling jalview/src/jalview/schemes build 04-Jun-2026 15:42:27 (Found 4 errors + 1925 warnings) Compiling jalview/src/jalview/structure build 04-Jun-2026 15:42:27 (Found 4 errors + 1926 warnings) Compiling jalview/src/jalview/structure build 04-Jun-2026 15:42:27 (Found 4 errors + 1927 warnings) Compiling jalview/src/jalview/structure build 04-Jun-2026 15:42:27 (Found 4 errors + 1933 warnings) Compiling jalview/src/jalview/structure build 04-Jun-2026 15:42:27 (Found 4 errors + 1935 warnings) Compiling jalview/src/jalview/structure build 04-Jun-2026 15:42:27 (Found 4 errors + 1937 warnings) Compiling jalview/src/jalview/structures/models build 04-Jun-2026 15:42:27 (Found 4 errors + 1937 warnings) Compiling jalview/src/jalview/urls build 04-Jun-2026 15:42:27 (Found 4 errors + 1938 warnings) Compiling jalview/src/jalview/urls build 04-Jun-2026 15:42:27 (Found 4 errors + 1938 warnings) Compiling jalview/src/jalview/urls/api build 04-Jun-2026 15:42:27 (Found 4 errors + 1938 warnings) Compiling jalview/src/jalview/urls/applet build 04-Jun-2026 15:42:28 (Found 4 errors + 1938 warnings) Compiling jalview/src/jalview/urls/desktop build 04-Jun-2026 15:42:28 (Found 4 errors + 1938 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1939 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1940 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1945 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1951 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1952 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1964 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1969 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1971 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1974 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1979 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1982 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1983 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1985 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1987 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1991 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 1995 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 2019 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 2020 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 2020 warnings) Compiling jalview/src/jalview/util/dialogrunner build 04-Jun-2026 15:42:28 (Found 4 errors + 2020 warnings) Compiling jalview/src/jalview/util/imagemaker build 04-Jun-2026 15:42:28 (Found 4 errors + 2020 warnings) Compiling jalview/src/jalview/util build 04-Jun-2026 15:42:28 (Found 4 errors + 2020 warnings) Compiling jalview/src/jalview/util/matcher build 04-Jun-2026 15:42:28 (Found 4 errors + 2032 warnings) Compiling jalview/src/jalview/viewmodel build 04-Jun-2026 15:42:28 (Found 4 errors + 2035 warnings) Compiling jalview/src/jalview/viewmodel build 04-Jun-2026 15:42:28 (Found 4 errors + 2042 warnings) Compiling jalview/src/jalview/viewmodel build 04-Jun-2026 15:42:28 (Found 4 errors + 2042 warnings) Compiling jalview/src/jalview/viewmodel/annotationfilter build 04-Jun-2026 15:42:28 (Found 4 errors + 2043 warnings) Compiling jalview/src/jalview/viewmodel/seqfeatures build 04-Jun-2026 15:42:28 (Found 4 errors + 2043 warnings) Compiling jalview/src/jalview/viewmodel/styles build 04-Jun-2026 15:42:28 (Found 4 errors + 2049 warnings) Compiling jalview/src/jalview/workers build 04-Jun-2026 15:42:28 (Found 4 errors + 2051 warnings) Compiling jalview/src/jalview/workers build 04-Jun-2026 15:42:28 (Found 4 errors + 2055 warnings) Compiling jalview/src/jalview/workers build 04-Jun-2026 15:42:28 (Found 4 errors + 2055 warnings) Compiling jalview/src/jalview/ws build 04-Jun-2026 15:42:28 (Found 4 errors + 2058 warnings) Compiling jalview/src/jalview/ws build 04-Jun-2026 15:42:28 (Found 4 errors + 2110 warnings) Compiling jalview/src/jalview/ws build 04-Jun-2026 15:42:28 (Found 4 errors + 2112 warnings) Compiling jalview/src/jalview/ws build 04-Jun-2026 15:42:28 (Found 4 errors + 2117 warnings) Compiling jalview/src/jalview/ws build 04-Jun-2026 15:42:28 (Found 4 errors + 2117 warnings) Compiling jalview/src/jalview/ws/api build 04-Jun-2026 15:42:28 (Found 4 errors + 2118 warnings) Compiling jalview/src/jalview/ws/api build 04-Jun-2026 15:42:28 (Found 4 errors + 2118 warnings) Compiling jalview/src/jalview/ws/datamodel build 04-Jun-2026 15:42:28 (Found 4 errors + 2121 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold build 04-Jun-2026 15:42:28 (Found 4 errors + 2126 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold build 04-Jun-2026 15:42:28 (Found 4 errors + 2129 warnings) Compiling jalview/src/jalview/ws/dbsources build 04-Jun-2026 15:42:28 (Found 4 errors + 2130 warnings) Compiling jalview/src/jalview/ws/dbsources build 04-Jun-2026 15:42:28 (Found 4 errors + 2133 warnings) Compiling jalview/src/jalview/ws/dbsources build 04-Jun-2026 15:42:28 (Found 4 errors + 2134 warnings) Compiling jalview/src/jalview/ws/dbsources build 04-Jun-2026 15:42:28 (Found 4 errors + 2134 warnings) Compiling jalview/src/jalview/ws/ebi build 04-Jun-2026 15:42:28 (Found 4 errors + 2147 warnings) Compiling jalview/src/jalview/ws/ebi build 04-Jun-2026 15:42:28 (Found 4 errors + 2157 warnings) Compiling jalview/src/jalview/ws/ebi build 04-Jun-2026 15:42:28 (Found 4 errors + 2157 warnings) Compiling jalview/src/jalview/ws/gui build 04-Jun-2026 15:42:28 (Found 4 errors + 2161 warnings) Compiling jalview/src/jalview/ws/gui build 04-Jun-2026 15:42:28 (Found 4 errors + 2164 warnings) Compiling jalview/src/jalview/ws/gui build 04-Jun-2026 15:42:28 (Found 4 errors + 2164 warnings) Compiling jalview/src/jalview/ws/io/mime build 04-Jun-2026 15:42:28 (Found 4 errors + 2164 warnings) Compiling jalview/src/jalview/ws/jws1 build 04-Jun-2026 15:42:28 (Found 4 errors + 2165 warnings) Compiling jalview/src/jalview/ws/jws1 build 04-Jun-2026 15:42:28 (Found 4 errors + 2166 warnings) Compiling jalview/src/jalview/ws/jws1 build 04-Jun-2026 15:42:28 (Found 4 errors + 2173 warnings) Compiling jalview/src/jalview/ws/jws1 build 04-Jun-2026 15:42:28 (Found 4 errors + 2183 warnings) Compiling jalview/src/jalview/ws/jws1 build 04-Jun-2026 15:42:28 (Found 4 errors + 2197 warnings) Compiling jalview/src/jalview/ws/jws1 build 04-Jun-2026 15:42:28 (Found 4 errors + 2200 warnings) Compiling jalview/src/jalview/ws/jws1 build 04-Jun-2026 15:42:28 (Found 4 errors + 2200 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2207 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2221 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2225 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2247 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2251 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2255 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2271 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2272 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2294 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2300 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2303 warnings) Compiling jalview/src/jalview/ws/jws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2306 warnings) Compiling jalview/src/jalview/ws/jws2/dm build 04-Jun-2026 15:42:28 (Found 4 errors + 2310 warnings) Compiling jalview/src/jalview/ws/jws2/dm build 04-Jun-2026 15:42:28 (Found 4 errors + 2313 warnings) Compiling jalview/src/jalview/ws/jws2/dm build 04-Jun-2026 15:42:28 (Found 4 errors + 2324 warnings) Compiling jalview/src/jalview/ws/jws2/dm build 04-Jun-2026 15:42:28 (Found 4 errors + 2324 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2327 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2334 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2339 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2345 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2353 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2 build 04-Jun-2026 15:42:28 (Found 4 errors + 2353 warnings) Compiling jalview/src/jalview/ws/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2354 warnings) Compiling jalview/src/jalview/ws/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2354 warnings) Compiling jalview/src/jalview/ws/params/simple build 04-Jun-2026 15:42:28 (Found 4 errors + 2354 warnings) Compiling jalview/src/jalview/ws/rest build 04-Jun-2026 15:42:28 (Found 4 errors + 2358 warnings) Compiling jalview/src/jalview/ws/rest build 04-Jun-2026 15:42:28 (Found 4 errors + 2364 warnings) Compiling jalview/src/jalview/ws/rest build 04-Jun-2026 15:42:28 (Found 4 errors + 2365 warnings) Compiling jalview/src/jalview/ws/rest build 04-Jun-2026 15:42:28 (Found 4 errors + 2370 warnings) Compiling jalview/src/jalview/ws/rest build 04-Jun-2026 15:42:28 (Found 4 errors + 2387 warnings) Compiling jalview/src/jalview/ws/rest build 04-Jun-2026 15:42:28 (Found 4 errors + 2393 warnings) Compiling jalview/src/jalview/ws/rest build 04-Jun-2026 15:42:28 (Found 4 errors + 2394 warnings) Compiling jalview/src/jalview/ws/rest/clientdefs build 04-Jun-2026 15:42:28 (Found 4 errors + 2396 warnings) Compiling jalview/src/jalview/ws/rest/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2398 warnings) Compiling jalview/src/jalview/ws/rest/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2399 warnings) Compiling jalview/src/jalview/ws/rest/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2400 warnings) Compiling jalview/src/jalview/ws/rest/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2401 warnings) Compiling jalview/src/jalview/ws/rest/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2402 warnings) Compiling jalview/src/jalview/ws/rest/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2405 warnings) Compiling jalview/src/jalview/ws/seqfetcher build 04-Jun-2026 15:42:28 (Found 4 errors + 2405 warnings) Compiling jalview/src/jalview/ws/sifts build 04-Jun-2026 15:42:28 (Found 4 errors + 2414 warnings) Compiling jalview/src/jalview/ws/sifts build 04-Jun-2026 15:42:28 (Found 4 errors + 2414 warnings) Compiling jalview/src/jalview/ws/slivkaws build 04-Jun-2026 15:42:28 (Found 4 errors + 2415 warnings) Compiling jalview/src/jalview/ws/slivkaws build 04-Jun-2026 15:42:28 (Found 4 errors + 2416 warnings) Compiling jalview/src/jalview/ws/slivkaws build 04-Jun-2026 15:42:28 (Found 4 errors + 2417 warnings) Compiling jalview/src/jalview/ws/slivkaws build 04-Jun-2026 15:42:28 (Found 4 errors + 2420 warnings) Compiling jalview/src/jalview/ws/uimodel build 04-Jun-2026 15:42:28 (Found 4 errors + 2420 warnings) Compiling jalview/src/jalview/ws/utils build 04-Jun-2026 15:42:28 (Found 4 errors + 2427 warnings) Compiling jalview/src/jalview/ws2/actions build 04-Jun-2026 15:42:28 (Found 4 errors + 2428 warnings) Compiling jalview/src/jalview/ws2/actions build 04-Jun-2026 15:42:28 (Found 4 errors + 2429 warnings) Compiling jalview/src/jalview/ws2/actions build 04-Jun-2026 15:42:28 (Found 4 errors + 2430 warnings) Compiling jalview/src/jalview/ws2/actions build 04-Jun-2026 15:42:28 (Found 4 errors + 2435 warnings) Compiling jalview/src/jalview/ws2/actions/alignment build 04-Jun-2026 15:42:28 (Found 4 errors + 2436 warnings) Compiling jalview/src/jalview/ws2/actions/alignment build 04-Jun-2026 15:42:28 (Found 4 errors + 2437 warnings) Compiling jalview/src/jalview/ws2/actions/alignment build 04-Jun-2026 15:42:28 (Found 4 errors + 2438 warnings) Compiling jalview/src/jalview/ws2/actions/annotation build 04-Jun-2026 15:42:28 (Found 4 errors + 2441 warnings) Compiling jalview/src/jalview/ws2/actions/annotation build 04-Jun-2026 15:42:28 (Found 4 errors + 2443 warnings) Compiling jalview/src/jalview/ws2/actions/api build 04-Jun-2026 15:42:28 (Found 4 errors + 2444 warnings) Compiling jalview/src/jalview/ws2/actions/api build 04-Jun-2026 15:42:28 (Found 4 errors + 2445 warnings) Compiling jalview/src/jalview/ws2/actions/api build 04-Jun-2026 15:42:28 (Found 4 errors + 2448 warnings) Compiling jalview/src/jalview/ws2/actions/hmmer build 04-Jun-2026 15:42:28 (Found 4 errors + 2450 warnings) Compiling jalview/src/jalview/ws2/actions/secstructpred build 04-Jun-2026 15:42:28 (Found 4 errors + 2453 warnings) Compiling jalview/src/jalview/ws2/actions/secstructpred build 04-Jun-2026 15:42:28 (Found 4 errors + 2453 warnings) Compiling jalview/src/jalview/ws2/api build 04-Jun-2026 15:42:28 (Found 4 errors + 2453 warnings) Compiling jalview/src/jalview/ws2/client/api build 04-Jun-2026 15:42:28 (Found 4 errors + 2455 warnings) Compiling jalview/src/jalview/ws2/client/ebi build 04-Jun-2026 15:42:28 (Found 4 errors + 2457 warnings) Compiling jalview/src/jalview/ws2/client/ebi build 04-Jun-2026 15:42:28 (Found 4 errors + 2458 warnings) Compiling jalview/src/jalview/ws2/client/jpred4 build 04-Jun-2026 15:42:28 (Found 4 errors + 2460 warnings) Compiling jalview/src/jalview/ws2/client/jpred4 build 04-Jun-2026 15:42:28 (Found 4 errors + 2463 warnings) Compiling jalview/src/jalview/ws2/client/slivka build 04-Jun-2026 15:42:28 (Found 4 errors + 2465 warnings) Compiling jalview/src/jalview/ws2/client/slivka build 04-Jun-2026 15:42:28 (Found 4 errors + 2466 warnings) Compiling jalview/src/jalview/ws2/client/slivka build 04-Jun-2026 15:42:28 (Found 4 errors + 2474 warnings) Compiling jalview/src/jalview/ws2/gui build 04-Jun-2026 15:42:28 (Found 4 errors + 2478 warnings) Compiling jalview/src/jalview/ws2/gui build 04-Jun-2026 15:42:28 (Found 4 errors + 2481 warnings) Compiling jalview/src/jalview/ws2/gui build 04-Jun-2026 15:42:28 (Found 4 errors + 2481 warnings) Compiling jalview/src/jalview/ws2/helpers build 04-Jun-2026 15:42:28 (Found 4 errors + 2482 warnings) Compiling jalview/src/jalview/ws2/helpers build 04-Jun-2026 15:42:28 (Found 4 errors + 2482 warnings) Compiling jalview/src/jalview/ws2/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2483 warnings) Compiling jalview/src/jalview/ws2/params build 04-Jun-2026 15:42:28 (Found 4 errors + 2483 warnings) Compiling jalview/src/jalview/xml/binding/embl build 04-Jun-2026 15:42:28 (Found 4 errors + 2483 warnings) Compiling jalview/src/jalview/xml/binding/jalview build 04-Jun-2026 15:42:29 (Found 4 errors + 2483 warnings) Compiling jalview/src/jalview/xml/binding/sifts build 04-Jun-2026 15:42:29 (Found 4 errors + 2483 warnings) Compiling jalview/src/jalview/xml/binding/uniprot build 04-Jun-2026 15:42:29 (Found 4 errors + 2484 warnings) Compiling jalview/src/javajs/async build 04-Jun-2026 15:42:29 (Found 4 errors + 2485 warnings) Compiling jalview/src/javajs/async build 04-Jun-2026 15:42:29 (Found 4 errors + 2487 warnings) Compiling jalview/src/javajs/async build 04-Jun-2026 15:42:29 (Found 4 errors + 2494 warnings) Compiling jalview/src/mc_view build 04-Jun-2026 15:42:29 (Found 4 errors + 2495 warnings) Compiling jalview/src/mc_view build 04-Jun-2026 15:42:29 (Found 4 errors + 2500 warnings) Compiling jalview/src/mc_view build 04-Jun-2026 15:42:29 (Found 4 errors + 2507 warnings) Compiling jalview/src/mc_view build 04-Jun-2026 15:42:29 (Found 4 errors + 2510 warnings) Compiling jalview/src/mc_view build 04-Jun-2026 15:42:29 (Found 4 errors + 2511 warnings) Compiling jalview/src/mc_view build 04-Jun-2026 15:42:29 (Found 4 errors + 2511 warnings) Compiling jalview/src/net/meyfa/sha256 build 04-Jun-2026 15:42:29 (Found 4 errors + 2511 warnings) Compiling jalview/src/org/jibble/epsgraphics build 04-Jun-2026 15:42:29 (Found 4 errors + 2512 warnings) Compiling jalview/src/org/jibble/epsgraphics build 04-Jun-2026 15:42:29 (Found 4 errors + 2518 warnings) Compiling jalview/src/org/jibble/epsgraphics build 04-Jun-2026 15:42:29 (Found 4 errors + 2518 warnings) Compiling jalview/src/org/json build 04-Jun-2026 15:42:29 (Found 4 errors + 2519 warnings) Compiling jalview/src/org/json build 04-Jun-2026 15:42:29 (Found 4 errors + 2520 warnings) Compiling jalview/src/org/json build 04-Jun-2026 15:42:29 (Found 4 errors + 2531 warnings) Compiling jalview/src/org/json/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2537 warnings) Compiling jalview/src/org/json/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2546 warnings) Compiling jalview/src/org/json/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2548 warnings) Compiling jalview/src/org/json/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2550 warnings) Compiling jalview/src/org/json/simple/parser build 04-Jun-2026 15:42:29 (Found 4 errors + 2625 warnings) Compiling jalview/src/org/json/simple/parser build 04-Jun-2026 15:42:29 (Found 4 errors + 2629 warnings) Compiling jalview/src/org/json/simple/parser build 04-Jun-2026 15:42:29 (Found 4 errors + 2629 warnings) Compiling jalview/src/org/stackoverflowusers/file build 04-Jun-2026 15:42:29 (Found 4 errors + 2630 warnings) Compiling jalview/src/swingjs/api build 04-Jun-2026 15:42:29 (Found 4 errors + 2630 warnings) Compiling jalview/src/swingjs/api/js build 04-Jun-2026 15:42:29 (Found 4 errors + 2631 warnings) Compiling jalview/src/uk/ac/ebi/picr/model build 04-Jun-2026 15:42:29 (Found 4 errors + 2633 warnings) Compiling jalview/src/uk/ac/ebi/picr/model build 04-Jun-2026 15:42:29 (Found 4 errors + 2634 warnings) Compiling jalview/src/uk/ac/ebi/picr/model build 04-Jun-2026 15:42:29 (Found 4 errors + 2636 warnings) Compiling jalview/src/uk/ac/ebi/picr/model build 04-Jun-2026 15:42:29 (Found 4 errors + 2639 warnings) Compiling jalview/src/uk/ac/ebi/www build 04-Jun-2026 15:42:29 (Found 4 errors + 2642 warnings) Compiling jalview/src/uk/ac/ebi/www build 04-Jun-2026 15:42:29 (Found 4 errors + 2645 warnings) Compiling jalview/src/uk/ac/ebi/www build 04-Jun-2026 15:42:29 (Found 4 errors + 2652 warnings) Compiling jalview/src/uk/ac/ebi/www build 04-Jun-2026 15:42:29 (Found 4 errors + 2700 warnings) Compiling jalview/src/uk/ac/ebi/www build 04-Jun-2026 15:42:29 (Found 4 errors + 2742 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService build 04-Jun-2026 15:42:29 (Found 4 errors + 2749 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService build 04-Jun-2026 15:42:29 (Found 4 errors + 2749 warnings) Compiling jalview/src/vamsas build 04-Jun-2026 15:42:29 (Found 4 errors + 2750 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2752 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2753 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2755 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2756 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2758 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2759 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2761 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2762 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2764 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2765 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2767 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2768 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2770 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2771 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2773 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2774 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2775 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2777 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2779 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2780 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2782 warnings) Compiling jalview/src/vamsas/objects/simple build 04-Jun-2026 15:42:29 (Found 4 errors + 2782 warnings) Cleaning output folder for jalview build 04-Jun-2026 15:42:29 (Found 4 errors + 2782 warnings) Copying resources to the output folder build 04-Jun-2026 15:42:29 (Found 4 errors + 2782 warnings) Analyzing sources build 04-Jun-2026 15:42:29 J2S buildStarting 316 files, contexts.size() = 2, isBatch=true build 04-Jun-2026 15:42:29 (Found 4 errors + 2782 warnings) Compiling jalview/test/jalview/analysis build 04-Jun-2026 15:42:29 (Found 4 errors + 2792 warnings) Compiling jalview/test/jalview/analysis build 04-Jun-2026 15:42:29 (Found 4 errors + 2807 warnings) Compiling jalview/test/jalview/analysis build 04-Jun-2026 15:42:29 (Found 4 errors + 2820 warnings) Compiling jalview/test/jalview/analysis build 04-Jun-2026 15:42:29 (Found 4 errors + 2822 warnings) Compiling jalview/test/jalview/analysis build 04-Jun-2026 15:42:29 (Found 4 errors + 2824 warnings) Compiling jalview/test/jalview/analysis build 04-Jun-2026 15:42:29 (Found 4 errors + 2865 warnings) Compiling jalview/test/jalview/analysis build 04-Jun-2026 15:42:29 (Found 4 errors + 2865 warnings) Compiling jalview/test/jalview/analysis/scoremodels build 04-Jun-2026 15:42:29 (Found 4 errors + 2870 warnings) Compiling jalview/test/jalview/analysis/scoremodels build 04-Jun-2026 15:42:29 (Found 4 errors + 2871 warnings) Compiling jalview/test/jalview/analysis/scoremodels build 04-Jun-2026 15:42:29 (Found 4 errors + 2877 warnings) Compiling jalview/test/jalview/analysis/scoremodels build 04-Jun-2026 15:42:29 (Found 4 errors + 2878 warnings) Compiling jalview/test/jalview/bin build 04-Jun-2026 15:42:30 (Found 4 errors + 2879 warnings) Compiling jalview/test/jalview/bin build 04-Jun-2026 15:42:30 (Found 4 errors + 2880 warnings) Compiling jalview/test/jalview/bin build 04-Jun-2026 15:42:30 (Found 4 errors + 2883 warnings) Compiling jalview/test/jalview/bin/argparser build 04-Jun-2026 15:42:30 (Found 4 errors + 2890 warnings) Compiling jalview/test/jalview/commands build 04-Jun-2026 15:42:30 (Found 4 errors + 2891 warnings) Compiling jalview/test/jalview/controller build 04-Jun-2026 15:42:30 (Found 4 errors + 2891 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2892 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2906 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2909 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2910 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2912 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2922 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2923 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2925 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2927 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2929 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2930 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2931 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2934 warnings) Compiling jalview/test/jalview/datamodel build 04-Jun-2026 15:42:30 (Found 4 errors + 2935 warnings) Compiling jalview/test/jalview/datamodel/features build 04-Jun-2026 15:42:30 (Found 4 errors + 2936 warnings) Compiling jalview/test/jalview/datamodel/features build 04-Jun-2026 15:42:30 (Found 4 errors + 2936 warnings) Compiling jalview/test/jalview/ext/android build 04-Jun-2026 15:42:30 (Found 4 errors + 2936 warnings) Compiling jalview/test/jalview/ext/ensembl build 04-Jun-2026 15:42:30 (Found 4 errors + 2936 warnings) Compiling jalview/test/jalview/ext/htsjdk build 04-Jun-2026 15:42:30 (Found 4 errors + 2937 warnings) Compiling jalview/test/jalview/ext/jmol build 04-Jun-2026 15:42:30 (Found 4 errors + 2938 warnings) Compiling jalview/test/jalview/ext/jmol build 04-Jun-2026 15:42:30 (Found 4 errors + 2938 warnings) Compiling jalview/test/jalview/ext/paradise build 04-Jun-2026 15:42:30 (Found 4 errors + 2938 warnings) Compiling jalview/test/jalview/ext/pymol build 04-Jun-2026 15:42:30 (Found 4 errors + 2938 warnings) Compiling jalview/test/jalview/ext/rbvi/chimera build 04-Jun-2026 15:42:30 (Found 4 errors + 2938 warnings) Compiling jalview/test/jalview/ext/so build 04-Jun-2026 15:42:30 (Found 4 errors + 2938 warnings) Compiling jalview/test/jalview/fts/core build 04-Jun-2026 15:42:30 (Found 4 errors + 2938 warnings) Compiling jalview/test/jalview/fts/service/pdb build 04-Jun-2026 15:42:30 (Found 4 errors + 2939 warnings) Compiling jalview/test/jalview/fts/service/pdb build 04-Jun-2026 15:42:30 (Found 4 errors + 2946 warnings) Compiling jalview/test/jalview/fts/threedbeacons build 04-Jun-2026 15:42:30 (Found 4 errors + 2951 warnings) Compiling jalview/test/jalview/fts/threedbeacons build 04-Jun-2026 15:42:30 (Found 4 errors + 2952 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 2954 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 2955 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 2957 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 2958 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 2978 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3003 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3004 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3006 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3009 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3010 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3011 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3012 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3015 warnings) Compiling jalview/test/jalview/gui build 04-Jun-2026 15:42:30 (Found 4 errors + 3021 warnings) Compiling jalview/test/jalview/gui/structurechooser build 04-Jun-2026 15:42:30 (Found 4 errors + 3021 warnings) Compiling jalview/test/jalview/hmmer build 04-Jun-2026 15:42:30 (Found 4 errors + 3022 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3026 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3030 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3034 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3036 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3037 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3038 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3045 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3047 warnings) Compiling jalview/test/jalview/io build 04-Jun-2026 15:42:30 (Found 4 errors + 3047 warnings) Compiling jalview/test/jalview/io/cache build 04-Jun-2026 15:42:30 (Found 4 errors + 3047 warnings) Compiling jalview/test/jalview/io/gff build 04-Jun-2026 15:42:30 (Found 4 errors + 3048 warnings) Compiling jalview/test/jalview/io/gff build 04-Jun-2026 15:42:31 (Found 4 errors + 3057 warnings) Compiling jalview/test/jalview/io/vcf build 04-Jun-2026 15:42:31 (Found 4 errors + 3057 warnings) Compiling jalview/test/jalview/math build 04-Jun-2026 15:42:31 (Found 4 errors + 3070 warnings) Compiling jalview/test/jalview/project build 04-Jun-2026 15:42:31 (Found 4 errors + 3071 warnings) Compiling jalview/test/jalview/renderer build 04-Jun-2026 15:42:31 (Found 4 errors + 3073 warnings) Compiling jalview/test/jalview/renderer build 04-Jun-2026 15:42:31 (Found 4 errors + 3079 warnings) Compiling jalview/test/jalview/renderer build 04-Jun-2026 15:42:31 (Found 4 errors + 3080 warnings) Compiling jalview/test/jalview/renderer build 04-Jun-2026 15:42:31 (Found 4 errors + 3081 warnings) Compiling jalview/test/jalview/renderer/seqfeatures build 04-Jun-2026 15:42:31 (Found 4 errors + 3081 warnings) Compiling jalview/test/jalview/schemes build 04-Jun-2026 15:42:31 (Found 4 errors + 3082 warnings) Compiling jalview/test/jalview/schemes build 04-Jun-2026 15:42:31 (Found 4 errors + 3082 warnings) Compiling jalview/test/jalview/structure build 04-Jun-2026 15:42:31 (Found 4 errors + 3084 warnings) Compiling jalview/test/jalview/structure build 04-Jun-2026 15:42:31 (Found 4 errors + 3085 warnings) Compiling jalview/test/jalview/structure build 04-Jun-2026 15:42:31 (Found 4 errors + 3086 warnings) Compiling jalview/test/jalview/structure build 04-Jun-2026 15:42:31 (Found 4 errors + 3089 warnings) Compiling jalview/test/jalview/structure build 04-Jun-2026 15:42:31 (Found 4 errors + 3089 warnings) Compiling jalview/test/jalview/structures/models build 04-Jun-2026 15:42:31 (Found 4 errors + 3089 warnings) Compiling jalview/test/jalview/testutils build 04-Jun-2026 15:42:31 (Found 4 errors + 3090 warnings) Compiling jalview/test/jalview/testutils build 04-Jun-2026 15:42:31 (Found 4 errors + 3091 warnings) Compiling jalview/test/jalview/urls build 04-Jun-2026 15:42:31 (Found 4 errors + 3096 warnings) Compiling jalview/test/jalview/urls build 04-Jun-2026 15:42:31 (Found 4 errors + 3101 warnings) Compiling jalview/test/jalview/urls build 04-Jun-2026 15:42:31 (Found 4 errors + 3101 warnings) Compiling jalview/test/jalview/util build 04-Jun-2026 15:42:31 (Found 4 errors + 3108 warnings) Compiling jalview/test/jalview/util build 04-Jun-2026 15:42:31 (Found 4 errors + 3109 warnings) Compiling jalview/test/jalview/util build 04-Jun-2026 15:42:31 (Found 4 errors + 3110 warnings) Compiling jalview/test/jalview/util build 04-Jun-2026 15:42:31 (Found 4 errors + 3114 warnings) Compiling jalview/test/jalview/util build 04-Jun-2026 15:42:31 (Found 4 errors + 3115 warnings) Compiling jalview/test/jalview/util build 04-Jun-2026 15:42:31 (Found 4 errors + 3120 warnings) Compiling jalview/test/jalview/util build 04-Jun-2026 15:42:31 (Found 4 errors + 3120 warnings) Compiling jalview/test/jalview/util/dialogrunner build 04-Jun-2026 15:42:31 (Found 4 errors + 3120 warnings) Compiling jalview/test/jalview/util/imagemaker build 04-Jun-2026 15:42:31 (Found 4 errors + 3120 warnings) Compiling jalview/test/jalview/util/matcher build 04-Jun-2026 15:42:31 (Found 4 errors + 3123 warnings) Compiling jalview/test/jalview/util/matcher build 04-Jun-2026 15:42:31 (Found 4 errors + 3129 warnings) Compiling jalview/test/jalview/viewmodel build 04-Jun-2026 15:42:31 (Found 4 errors + 3135 warnings) Compiling jalview/test/jalview/viewmodel build 04-Jun-2026 15:42:31 (Found 4 errors + 3137 warnings) Compiling jalview/test/jalview/viewmodel/styles build 04-Jun-2026 15:42:31 (Found 4 errors + 3137 warnings) Compiling jalview/test/jalview/workers build 04-Jun-2026 15:42:31 (Found 4 errors + 3137 warnings) Compiling jalview/test/jalview/ws build 04-Jun-2026 15:42:31 (Found 4 errors + 3139 warnings) Compiling jalview/test/jalview/ws build 04-Jun-2026 15:42:31 (Found 4 errors + 3142 warnings) Compiling jalview/test/jalview/ws/dbsources build 04-Jun-2026 15:42:31 (Found 4 errors + 3160 warnings) Compiling jalview/test/jalview/ws/dbsources build 04-Jun-2026 15:42:31 (Found 4 errors + 3161 warnings) Compiling jalview/test/jalview/ws/dbsources build 04-Jun-2026 15:42:31 (Found 4 errors + 3161 warnings) Compiling jalview/test/jalview/ws/ebi build 04-Jun-2026 15:42:31 (Found 4 errors + 3169 warnings) Compiling jalview/test/jalview/ws/gui build 04-Jun-2026 15:42:31 (Found 4 errors + 3169 warnings) Compiling jalview/test/jalview/ws/jabaws build 04-Jun-2026 15:42:31 (Found 4 errors + 3170 warnings) Compiling jalview/test/jalview/ws/jabaws build 04-Jun-2026 15:42:31 (Found 4 errors + 3171 warnings) Compiling jalview/test/jalview/ws/jabaws build 04-Jun-2026 15:42:31 (Found 4 errors + 3172 warnings) Compiling jalview/test/jalview/ws/jabaws build 04-Jun-2026 15:42:31 (Found 4 errors + 3176 warnings) Compiling jalview/test/jalview/ws/jabaws build 04-Jun-2026 15:42:31 (Found 4 errors + 3194 warnings) Compiling jalview/test/jalview/ws/jws2 build 04-Jun-2026 15:42:31 (Found 4 errors + 3194 warnings) Compiling jalview/test/jalview/ws/rest build 04-Jun-2026 15:42:31 (Found 4 errors + 3195 warnings) Compiling jalview/test/jalview/ws/rest build 04-Jun-2026 15:42:31 (Found 4 errors + 3195 warnings) Compiling jalview/test/jalview/ws/seqfetcher build 04-Jun-2026 15:42:31 (Found 4 errors + 3195 warnings) Compiling jalview/test/jalview/ws/sifts build 04-Jun-2026 15:42:31 (Found 4 errors + 3197 warnings) Compiling jalview/test/jalview/ws/utils build 04-Jun-2026 15:42:31 (Found 4 errors + 3205 warnings) Compiling jalview/test/jalview/ws2/actions/alignment build 04-Jun-2026 15:42:31 (Found 4 errors + 3205 warnings) Compiling jalview/test/jalview/ws2/actions/annotation build 04-Jun-2026 15:42:31 (Found 4 errors + 3205 warnings) Compiling jalview/test/jalview/ws2/actions/secstructpred build 04-Jun-2026 15:42:31 (Found 4 errors + 3205 warnings) Compiling jalview/test/jalview/ws2/client/slivka build 04-Jun-2026 15:42:31 (Found 4 errors + 3221 warnings) Compiling jalview/test/junit/extensions build 04-Jun-2026 15:42:31 (Found 4 errors + 3223 warnings) Compiling jalview/test/junit/extensions build 04-Jun-2026 15:42:31 (Found 4 errors + 3223 warnings) Compiling jalview/test/mc_view build 04-Jun-2026 15:42:31 (Found 4 errors + 3224 warnings) Compiling jalview/test/mc_view build 04-Jun-2026 15:42:31 J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/.j2s build 04-Jun-2026 15:42:31 j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename build 04-Jun-2026 15:42:31 J2S System.getProperty("org.jalview.jalviewjsj2sfilename") = ./build/jalviewjs/config/j2s build 04-Jun-2026 15:42:31 J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/./build/jalviewjs/config/j2s build 04-Jun-2026 15:42:31 j2s.compiler.status = enable build 04-Jun-2026 15:42:31 j2s.compiler.java.version = 8 build 04-Jun-2026 15:42:31 J2S compiler version set to 8 build 04-Jun-2026 15:42:31 j2s.break.on.error = false build 04-Jun-2026 15:42:31 j2s.exact.long = true build 04-Jun-2026 15:42:31 j2s.async.thread = false build 04-Jun-2026 15:42:31 j2s.compiler.mode = nodebug build 04-Jun-2026 15:42:31 j2s.site.directory = ./build/jalviewjs/tmp/site_js build 04-Jun-2026 15:42:31 J2S writing to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s build 04-Jun-2026 15:42:31 j2s.log.methods.declared = build 04-Jun-2026 15:42:31 j2s.log.methods.called = build 04-Jun-2026 15:42:31 j2s.excluded.paths = test;testng;util build 04-Jun-2026 15:42:31 j2s.compiler.read.annotations = true build 04-Jun-2026 15:42:31 j2s.compiler.ignored.annotations = CallerSensitive;ConstructorProperties;Deprecated;Override;SafeVarargs;SuppressWarnings;FunctionalInterface;Documented;Inherited;Native;Repeatable;Retention; build 04-Jun-2026 15:42:31 j2s.testing = false build 04-Jun-2026 15:42:31 j2s.compiler.nonqualified.packages = build 04-Jun-2026 15:42:31 j2s.compiler.nonqualified.classes = build 04-Jun-2026 15:42:31 j2s.class.replacements = build 04-Jun-2026 15:42:31 j2s.template.html = utils/jalviewjs/template.html build 04-Jun-2026 15:42:31 J2S using HTML template /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/utils/jalviewjs/template.html build 04-Jun-2026 15:42:31 J2S building JavaScript jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Thu Jun 04 15:42:31 BST 2026 build 04-Jun-2026 15:42:31 J2S building JavaScript for 1259 files build 04-Jun-2026 15:42:31 J2S transpiling (1/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/github/reinert/jjschema/Attributes.java build 04-Jun-2026 15:42:32 j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/com build 04-Jun-2026 15:42:32 J2S transpiling (2/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/AmpersandRule.java build 04-Jun-2026 15:42:32 J2S transpiling (3/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/Any.java build 04-Jun-2026 15:42:32 J2S transpiling (4/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/BackG.java build 04-Jun-2026 15:42:32 J2S transpiling (5/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/BackMatch.java build 04-Jun-2026 15:42:32 J2S transpiling (6/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/BackRefRule.java build 04-Jun-2026 15:42:32 J2S transpiling (7/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/Backup.java build 04-Jun-2026 15:42:32 J2S transpiling (8/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/BasicStringBufferLike.java build 04-Jun-2026 15:42:32 J2S transpiling (9/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/Bits.java build 04-Jun-2026 15:42:32 J2S transpiling (10/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/Boundary.java build 04-Jun-2026 15:42:32 J2S transpiling (11/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/Bracket.java build 04-Jun-2026 15:42:32 J2S transpiling (12/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/CaseMgr.java build 04-Jun-2026 15:42:33 J2S transpiling (13/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/ChangeRule.java build 04-Jun-2026 15:42:33 J2S transpiling (14/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/CodeRule.java build 04-Jun-2026 15:42:33 J2S transpiling (15/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/Ctrl.java build 04-Jun-2026 15:42:33 J2S transpiling (16/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/Custom.java build 04-Jun-2026 15:42:33 J2S transpiling (17/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/CustomEndpoint.java build 04-Jun-2026 15:42:33 J2S transpiling (18/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/DirFileRegex.java build 04-Jun-2026 15:42:33 J2S transpiling (19/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/DotMulti.java build 04-Jun-2026 15:42:33 J2S transpiling (20/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/End.java build 04-Jun-2026 15:42:33 J2S transpiling (21/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/FastBracket.java build 04-Jun-2026 15:42:33 J2S transpiling (22/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/FastMulti.java build 04-Jun-2026 15:42:33 J2S transpiling (23/1259) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/src/com/stevesoft/pat/FileRegex.java build 04-Jun-2026 15:42:33 J2S transpiling (24/1259) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/jalview/ws2/actions/secstructpred/SecStructPredMsaTaskTest.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTaskTest.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/jalview/ws2/client/slivka/SlivkaWSDiscovererTest.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/junit/extensions/PA.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/junit/extensions/PrivilegedAccessor.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/mc_view/AtomTest.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/mc_view/BondTest.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/mc_view/PDBChainTest.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/mc_view/PDBfileTest.java build 04-Jun-2026 15:43:01 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/test/mc_view/ResidueTest.java build 04-Jun-2026 15:43:01 J2S processed 1259 .java files, created 1292 .js files and 11 .html files, copied 7 resources build 04-Jun-2026 15:43:01 J2S buildFinished 1259 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 build 04-Jun-2026 15:43:01 J2S buildFinished nerror = 0 Thu Jun 04 15:43:01 BST 2026 build 04-Jun-2026 15:43:01 (Found 4 errors + 3224 warnings) Build done build 04-Jun-2026 15:43:01 Invoking 'Gradle Project Builder' on '/jalview'. build 04-Jun-2026 15:43:02 :jalviewjsTranspile (Thread[included builds,5,main]) completed. Took 46.742 secs. build 04-Jun-2026 15:43:02 :jalviewjsCopyTransferSiteJs (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:02 build 04-Jun-2026 15:43:02 > Task :jalviewjsCopyTransferSiteJs build 04-Jun-2026 15:43:02 Caching disabled for task ':jalviewjsCopyTransferSiteJs' because: build 04-Jun-2026 15:43:02 Build cache is disabled build 04-Jun-2026 15:43:02 Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because: build 04-Jun-2026 15:43:02 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site has been removed. build 04-Jun-2026 15:43:02 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed. build 04-Jun-2026 15:43:02 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_AppletParams.html has been removed. build 04-Jun-2026 15:43:02 :jalviewjsCopyTransferSiteJs (Thread[included builds,5,main]) completed. Took 0.17 secs. build 04-Jun-2026 15:43:02 :jalviewjsTransferUnzipLib (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:03 build 04-Jun-2026 15:43:03 > Task :jalviewjsTransferUnzipLib build 04-Jun-2026 15:43:03 Caching disabled for task ':jalviewjsTransferUnzipLib' because: build 04-Jun-2026 15:43:03 Build cache is disabled build 04-Jun-2026 15:43:03 Task ':jalviewjsTransferUnzipLib' is not up-to-date because: build 04-Jun-2026 15:43:03 One or more additional actions for task ':jalviewjsTransferUnzipLib' have changed. build 04-Jun-2026 15:43:03 :jalviewjsTransferUnzipLib (Thread[included builds,5,main]) completed. Took 0.377 secs. build 04-Jun-2026 15:43:03 :jalviewjsTransferUnzipSwingJs (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:03 build 04-Jun-2026 15:43:03 > Task :jalviewjsTransferUnzipSwingJs build 04-Jun-2026 15:43:03 Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because: build 04-Jun-2026 15:43:03 Build cache is disabled build 04-Jun-2026 15:43:03 Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because: build 04-Jun-2026 15:43:03 One or more additional actions for task ':jalviewjsTransferUnzipSwingJs' have changed. build 04-Jun-2026 15:43:03 :jalviewjsTransferUnzipSwingJs (Thread[included builds,5,main]) completed. Took 0.664 secs. build 04-Jun-2026 15:43:03 :jalviewjsTransferUnzipAllLibs (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:03 build 04-Jun-2026 15:43:03 > Task :jalviewjsTransferUnzipAllLibs build 04-Jun-2026 15:43:03 Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions. build 04-Jun-2026 15:43:03 :jalviewjsTransferUnzipAllLibs (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:03 :jalviewjsSyncAllLibs (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:04 build 04-Jun-2026 15:43:04 > Task :jalviewjsSyncAllLibs build 04-Jun-2026 15:43:04 Caching disabled for task ':jalviewjsSyncAllLibs' because: build 04-Jun-2026 15:43:04 Build cache is disabled build 04-Jun-2026 15:43:04 Task ':jalviewjsSyncAllLibs' is not up-to-date because: build 04-Jun-2026 15:43:04 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/Assets.js has changed. build 04-Jun-2026 15:43:04 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/Async.js has changed. build 04-Jun-2026 15:43:04 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/AsyncColorChooser.js has changed. build 04-Jun-2026 15:43:04 :jalviewjsSyncAllLibs (Thread[included builds,5,main]) completed. Took 0.827 secs. build 04-Jun-2026 15:43:04 :copyResources (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:04 build 04-Jun-2026 15:43:04 > Task :copyResources build 04-Jun-2026 15:43:04 Caching disabled for task ':copyResources' because: build 04-Jun-2026 15:43:04 Build cache is disabled build 04-Jun-2026 15:43:04 Task ':copyResources' is not up-to-date because: build 04-Jun-2026 15:43:04 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/resources/resources_build has been removed. build 04-Jun-2026 15:43:04 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/resources/resources_build/AmbiguityCodes.dat has been removed. build 04-Jun-2026 15:43:04 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/resources/resources_build/authors.props has been removed. build 04-Jun-2026 15:43:04 :copyResources (Thread[included builds,5,main]) completed. Took 0.068 secs. build 04-Jun-2026 15:43:04 :createBuildProperties (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:04 build 04-Jun-2026 15:43:04 > Task :createBuildProperties build 04-Jun-2026 15:43:04 Caching disabled for task ':createBuildProperties' because: build 04-Jun-2026 15:43:04 Build cache is disabled build 04-Jun-2026 15:43:04 Task ':createBuildProperties' is not up-to-date because: build 04-Jun-2026 15:43:04 Value of input property 'comment' has changed for task ':createBuildProperties' build 04-Jun-2026 15:43:04 Value of input property 'properties' has changed for task ':createBuildProperties' build 04-Jun-2026 15:43:04 :createBuildProperties (Thread[included builds,5,main]) completed. Took 0.001 secs. build 04-Jun-2026 15:43:04 :jalviewjsSyncBuildProperties (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:04 build 04-Jun-2026 15:43:04 > Task :jalviewjsSyncBuildProperties build 04-Jun-2026 15:43:04 Caching disabled for task ':jalviewjsSyncBuildProperties' because: build 04-Jun-2026 15:43:04 Build cache is disabled build 04-Jun-2026 15:43:04 Task ':jalviewjsSyncBuildProperties' is not up-to-date because: build 04-Jun-2026 15:43:04 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed. build 04-Jun-2026 15:43:04 :jalviewjsSyncBuildProperties (Thread[included builds,5,main]) completed. Took 0.099 secs. build 04-Jun-2026 15:43:04 :jalviewjsBuildAllCores (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:06 build 04-Jun-2026 15:43:06 > Task :jalviewjsBuildAllCores build 04-Jun-2026 15:43:06 Execution optimizations have been disabled for task ':jalviewjsBuildAllCores' to ensure correctness due to the following reasons: build 04-Jun-2026 15:43:06 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/tmp/site_lib/swingjs/j2s'. Reason: Task ':jalviewjsBuildAllCores' uses this output of task ':jalviewjsTransferUnzipLib' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 04-Jun-2026 15:43:06 Invalidating VFS because task ':jalviewjsBuildAllCores' failed validation build 04-Jun-2026 15:43:06 Caching disabled for task ':jalviewjsBuildAllCores' because: build 04-Jun-2026 15:43:06 Build cache is disabled build 04-Jun-2026 15:43:06 Task ':jalviewjsBuildAllCores' is not up-to-date because: build 04-Jun-2026 15:43:06 Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. build 04-Jun-2026 15:43:06 Creating core for stevesoft... build 04-Jun-2026 15:43:06 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.js build 04-Jun-2026 15:43:06 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.z.js build 04-Jun-2026 15:43:06 build 04-Jun-2026 15:43:06 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.z.js' build 04-Jun-2026 15:43:06 build 04-Jun-2026 15:43:06 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.z.js build 04-Jun-2026 15:43:06 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 04-Jun-2026 15:43:07 -- build 04-Jun-2026 15:43:07 Creating core for jvjmol... build 04-Jun-2026 15:43:07 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.js build 04-Jun-2026 15:43:07 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.z.js build 04-Jun-2026 15:43:07 build 04-Jun-2026 15:43:07 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.z.js' build 04-Jun-2026 15:43:07 build 04-Jun-2026 15:43:07 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.z.js build 04-Jun-2026 15:43:07 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 04-Jun-2026 15:43:10 -- build 04-Jun-2026 15:43:10 Creating core for jalview... build 04-Jun-2026 15:43:10 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js build 04-Jun-2026 15:43:10 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js build 04-Jun-2026 15:43:10 build 04-Jun-2026 15:43:10 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js' build 04-Jun-2026 15:43:10 build 04-Jun-2026 15:43:10 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js build 04-Jun-2026 15:43:10 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 04-Jun-2026 15:43:23 -- build 04-Jun-2026 15:43:23 Creating core for jvexamplefile... build 04-Jun-2026 15:43:23 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js build 04-Jun-2026 15:43:23 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js build 04-Jun-2026 15:43:23 build 04-Jun-2026 15:43:23 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js' build 04-Jun-2026 15:43:23 build 04-Jun-2026 15:43:23 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js build 04-Jun-2026 15:43:23 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 04-Jun-2026 15:43:25 -- build 04-Jun-2026 15:43:25 Creating core for _stevesoft... build 04-Jun-2026 15:43:25 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js build 04-Jun-2026 15:43:25 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js build 04-Jun-2026 15:43:25 build 04-Jun-2026 15:43:25 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js' build 04-Jun-2026 15:43:25 build 04-Jun-2026 15:43:25 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js build 04-Jun-2026 15:43:25 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 04-Jun-2026 15:43:28 -- build 04-Jun-2026 15:43:28 :jalviewjsBuildAllCores (Thread[included builds,5,main]) completed. Took 23.709 secs. build 04-Jun-2026 15:43:28 :jalviewjsPublishCoreTemplates (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:28 build 04-Jun-2026 15:43:28 > Task :jalviewjsPublishCoreTemplates build 04-Jun-2026 15:43:28 Caching disabled for task ':jalviewjsPublishCoreTemplates' because: build 04-Jun-2026 15:43:28 Build cache is disabled build 04-Jun-2026 15:43:28 Task ':jalviewjsPublishCoreTemplates' is not up-to-date because: build 04-Jun-2026 15:43:28 One or more additional actions for task ':jalviewjsPublishCoreTemplates' have changed. build 04-Jun-2026 15:43:28 :jalviewjsPublishCoreTemplates (Thread[included builds,5,main]) completed. Took 0.012 secs. build 04-Jun-2026 15:43:28 :jalviewjsSyncCore (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:28 build 04-Jun-2026 15:43:28 > Task :jalviewjsSyncCore build 04-Jun-2026 15:43:28 Caching disabled for task ':jalviewjsSyncCore' because: build 04-Jun-2026 15:43:28 Build cache is disabled build 04-Jun-2026 15:43:28 Task ':jalviewjsSyncCore' is not up-to-date because: build 04-Jun-2026 15:43:28 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/JalviewJS__stevesoft.html has been removed. build 04-Jun-2026 15:43:28 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/JalviewJS_jalview.html has been removed. build 04-Jun-2026 15:43:28 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/JalviewJS_jvexamplefile.html has been removed. build 04-Jun-2026 15:43:28 :jalviewjsSyncCore (Thread[included builds,5,main]) completed. Took 0.204 secs. build 04-Jun-2026 15:43:28 :copyChannelResources (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:28 build 04-Jun-2026 15:43:28 > Task :copyChannelResources build 04-Jun-2026 15:43:28 Execution optimizations have been disabled for task ':copyChannelResources' to ensure correctness due to the following reasons: build 04-Jun-2026 15:43:28 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 04-Jun-2026 15:43:28 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/resources/resources_build'. Reason: Task ':jalviewjsSyncBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 04-Jun-2026 15:43:28 Invalidating VFS because task ':copyChannelResources' failed validation build 04-Jun-2026 15:43:28 Caching disabled for task ':copyChannelResources' because: build 04-Jun-2026 15:43:28 Build cache is disabled build 04-Jun-2026 15:43:28 Task ':copyChannelResources' is not up-to-date because: build 04-Jun-2026 15:43:28 Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. build 04-Jun-2026 15:43:28 :copyChannelResources (Thread[included builds,5,main]) completed. Took 0.015 secs. build 04-Jun-2026 15:43:28 :buildResources (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:28 build 04-Jun-2026 15:43:28 > Task :buildResources build 04-Jun-2026 15:43:28 Skipping task ':buildResources' as it has no actions. build 04-Jun-2026 15:43:28 :buildResources (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:28 :jalviewjsSyncResources (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:28 build 04-Jun-2026 15:43:28 > Task :jalviewjsSyncResources build 04-Jun-2026 15:43:28 Caching disabled for task ':jalviewjsSyncResources' because: build 04-Jun-2026 15:43:28 Build cache is disabled build 04-Jun-2026 15:43:28 Task ':jalviewjsSyncResources' is not up-to-date because: build 04-Jun-2026 15:43:28 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has changed. build 04-Jun-2026 15:43:28 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/j2s/AmbiguityCodes.dat has been removed. build 04-Jun-2026 15:43:28 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/j2s/authors.props has been removed. build 04-Jun-2026 15:43:28 :jalviewjsSyncResources (Thread[included builds,5,main]) completed. Took 0.174 secs. build 04-Jun-2026 15:43:28 :jalviewjsSyncSiteResources (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:29 build 04-Jun-2026 15:43:29 > Task :jalviewjsSyncSiteResources build 04-Jun-2026 15:43:29 Caching disabled for task ':jalviewjsSyncSiteResources' because: build 04-Jun-2026 15:43:29 Build cache is disabled build 04-Jun-2026 15:43:29 Task ':jalviewjsSyncSiteResources' is not up-to-date because: build 04-Jun-2026 15:43:29 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/___j2sflags.htm has changed. build 04-Jun-2026 15:43:29 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_JalviewJS2.html has changed. build 04-Jun-2026 15:43:29 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/_jalview_bin_JalviewJS_core.html has been removed. build 04-Jun-2026 15:43:29 :jalviewjsSyncSiteResources (Thread[included builds,5,main]) completed. Took 0.228 secs. build 04-Jun-2026 15:43:29 :jalviewjsPrepareSite (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:29 build 04-Jun-2026 15:43:29 > Task :jalviewjsPrepareSite build 04-Jun-2026 15:43:29 Skipping task ':jalviewjsPrepareSite' as it has no actions. build 04-Jun-2026 15:43:29 :jalviewjsPrepareSite (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:29 :jalviewjsBuildSite (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:29 build 04-Jun-2026 15:43:29 > Task :jalviewjsBuildSite build 04-Jun-2026 15:43:29 Skipping task ':jalviewjsBuildSite' as it has no actions. build 04-Jun-2026 15:43:29 :jalviewjsBuildSite (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:29 :cleanJalviewjsChromiumUserDir (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:29 build 04-Jun-2026 15:43:29 > Task :cleanJalviewjsChromiumUserDir build 04-Jun-2026 15:43:29 Caching disabled for task ':cleanJalviewjsChromiumUserDir' because: build 04-Jun-2026 15:43:29 Build cache is disabled build 04-Jun-2026 15:43:29 Task ':cleanJalviewjsChromiumUserDir' is not up-to-date because: build 04-Jun-2026 15:43:29 One or more additional actions for task ':cleanJalviewjsChromiumUserDir' have changed. build 04-Jun-2026 15:43:29 :cleanJalviewjsChromiumUserDir (Thread[included builds,5,main]) completed. Took 0.001 secs. build 04-Jun-2026 15:43:29 :jalviewjsChromiumProfile (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:29 build 04-Jun-2026 15:43:29 > Task :jalviewjsChromiumProfile build 04-Jun-2026 15:43:29 Caching disabled for task ':jalviewjsChromiumProfile' because: build 04-Jun-2026 15:43:29 Build cache is disabled build 04-Jun-2026 15:43:29 Task ':jalviewjsChromiumProfile' is not up-to-date because: build 04-Jun-2026 15:43:29 One or more additional actions for task ':jalviewjsChromiumProfile' have changed. build 04-Jun-2026 15:43:29 :jalviewjsChromiumProfile (Thread[included builds,5,main]) completed. Took 0.001 secs. build 04-Jun-2026 15:43:29 :jalviewjsCopyStderrLaunchFile (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:29 build 04-Jun-2026 15:43:29 > Task :jalviewjsCopyStderrLaunchFile build 04-Jun-2026 15:43:29 Caching disabled for task ':jalviewjsCopyStderrLaunchFile' because: build 04-Jun-2026 15:43:29 Build cache is disabled build 04-Jun-2026 15:43:29 Task ':jalviewjsCopyStderrLaunchFile' is not up-to-date because: build 04-Jun-2026 15:43:29 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed. build 04-Jun-2026 15:43:29 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed. build 04-Jun-2026 15:43:29 :jalviewjsCopyStderrLaunchFile (Thread[included builds,5,main]) completed. Took 0.061 secs. build 04-Jun-2026 15:43:29 :jalviewjsLaunchTest (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:29 COMMAND: '/home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html' build 04-Jun-2026 15:43:29 Starting process 'command '/home/bamboo/buildtools/chromium/chrome''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1 Command: /home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html build 04-Jun-2026 15:43:29 Successfully started process 'command '/home/bamboo/buildtools/chromium/chrome'' error 04-Jun-2026 15:43:29 [23414:23414:0604/154329.683308:WARNING:chrome_main_delegate.cc(593)] This is Thorium version: 114.0.5735.134 (not a warning) error 04-Jun-2026 15:43:30 [23414:23414:0604/154329.982858:WARNING:chrome_browser_cloud_management_controller.cc(87)] Could not create policy manager as CBCM is not enabled. error 04-Jun-2026 15:43:30 [23414:23429:0604/154330.356858:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 04-Jun-2026 15:43:30 [23414:23429:0604/154330.363583:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 04-Jun-2026 15:43:30 [23414:23429:0604/154330.363611:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 04-Jun-2026 15:43:30 [23414:23429:0604/154330.363624:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 04-Jun-2026 15:43:30 [23414:23414:0604/154330.468173:ERROR:chrome_browser_cloud_management_controller.cc(162)] Cloud management controller initialization aborted as CBCM is not enabled. error 04-Jun-2026 15:43:30 [23414:23429:0604/154330.588123:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 04-Jun-2026 15:43:30 [23414:23429:0604/154330.588146:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 04-Jun-2026 15:43:30 [23441:23441:0604/154330.727422:ERROR:vaapi_wrapper.cc(3273)] Failed to initialize VAAPI libs error 04-Jun-2026 15:43:30 [23441:23441:0604/154330.733625:WARNING:sandbox_linux.cc(393)] InitializeSandbox() called with multiple threads in process gpu-process. error 04-Jun-2026 15:43:30 [23414:23426:0604/154330.756451:WARNING:external_pref_loader.cc(294)] You are using an old-style extension deployment method (external_extensions.json), which will soon be deprecated. (see http://developer.chrome.com/extensions/external_extensions.html) error 04-Jun-2026 15:43:30 [23443:23474:0604/154330.836604:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration error 04-Jun-2026 15:43:30 [23443:23474:0604/154330.837965:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.067195:WARNING:bluez_dbus_manager.cc(247)] Floss manager not present, cannot set Floss enable/disable. error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.067311:ERROR:object_proxy.cc(590)] Failed to call method: org.freedesktop.portal.Settings.Read: object_path= /org/freedesktop/portal/desktop: unknown error type: build 04-Jun-2026 15:43:31 build 04-Jun-2026 15:43:31 > Task :jalviewjsLaunchTest build 04-Jun-2026 15:43:31 Caching disabled for task ':jalviewjsLaunchTest' because: build 04-Jun-2026 15:43:31 Build cache is disabled build 04-Jun-2026 15:43:31 Task ':jalviewjsLaunchTest' is not up-to-date because: build 04-Jun-2026 15:43:31 Task has not declared any outputs despite executing actions. build 04-Jun-2026 15:43:31 error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.488763:INFO:CONSOLE(13141)] "J2SApplet load testApplet loadClazz...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.488789:INFO:CONSOLE(13141)] "J2SApplet load testApplet start applet...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.556068:INFO:CONSOLE(13084)] "j2sApplet exec testApplet loadClazz null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.575892:INFO:CONSOLE(17180)] "j2sApplet exec testApplet start applet null error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.575919:INFO:CONSOLE(13084)] "j2sApplet exec testApplet start applet null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.577012:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Class.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.587856:INFO:CONSOLE(26)] "transpiler was unknown now 3.3.1-v1 for java.lang.Class error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.588236:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Jalview.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.592229:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/groovy/JalviewObjectI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.594455:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/ApplicationSingletonProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.598932:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/Platform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.601835:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSUtil.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.606976:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/JSUtilI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.610207:INFO:CONSOLE(17180)] "swingjs.JSUtil initialized;debug=false error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.611028:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.613058:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Toolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.616125:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.619807:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.622469:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/ComponentFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.625702:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.629390:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.632325:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Map.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.635564:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.637549:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/ChangeListenerMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.641340:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.642929:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.644794:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.647582:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.648772:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Thread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.653611:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.657541:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.659500:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/JSThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.661785:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.664563:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PostEventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.667417:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentThreadAppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.670687:INFO:CONSOLE(17180)] "JSToolkit initialized error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.670706:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/Method.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.674308:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AccessibleObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.676484:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AnnotatedElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.680600:INFO:CONSOLE(26)] "Could not find Toolkit method getMenuShortcutKeyMaskEx. Trying getMenuShortcutKeyMask. error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.681930:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Hashtable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.687845:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Dictionary.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.694934:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.698988:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFrameViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.701090:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSApp.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.710730:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSInterface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.712800:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletStub.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.717305:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.721145:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URL.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.723579:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/Interface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.728601:INFO:CONSOLE(17180)] "swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.728621:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.732789:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.735755:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.737467:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractCollection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.741304:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.744809:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Iterable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.747357:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Set.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.750848:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Enumeration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.761926:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Iterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.764504:INFO:CONSOLE(17180)] "JSApp get parameter: language = null error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.764529:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Locale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.769915:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/BaseLocale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.773777:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/StringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.776402:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AbstractStringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.778883:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LocaleUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.781913:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Enum.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.786297:INFO:CONSOLE(17180)] "JSApp get parameter: name = testApplet error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.786315:INFO:CONSOLE(17180)] "JSApp get parameter: syncId = 370585351105799 error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.786323:INFO:CONSOLE(17180)] "JSApp initialized error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.786332:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Dimension.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.789419:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Dimension2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.790411:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Lst.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.793507:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ArrayList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.797069:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.799891:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/List.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.801831:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/RandomAccess.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.804865:INFO:CONSOLE(17180)] "JSAppletViewer initializing2 error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.805011:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Insets.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.807159:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.809301:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.811305:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.814288:INFO:CONSOLE(17180)] "JSGraphicsConfiguration initialized error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.814304:INFO:CONSOLE(17180)] "swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.814315:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.816804:INFO:CONSOLE(17180)] "JSGraphicsEnvironment initialized error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.816819:INFO:CONSOLE(17180)] "swingjs.api.Interface creating instance of swingjs.JSScreenDevice error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.816828:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSScreenDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.819880:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.822387:INFO:CONSOLE(17180)] "JSScreenDevice initialized error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.824463:INFO:CONSOLE(17180)] "JSAppletViewer thread run1 mode=0 status=0 error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.824975:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingUtilities.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.830676:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.833819:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentKeyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.837563:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InvocationEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.839972:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.842032:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.843608:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ActiveEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.846096:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AWTAutoShutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.849030:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.853852:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/IdentityHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.856389:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventDispatchThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.859195:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.861431:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventFilter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.864028:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Arrays.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.868897:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.871356:INFO:CONSOLE(17180)] "JSAppletViewer thread run1 mode=1 status=1 error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.871379:INFO:CONSOLE(17180)] "JSAppletViewer runloader error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.871874:INFO:CONSOLE(17180)] "JSApp get parameter: main = jalview.bin.Jalview error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.871887:INFO:CONSOLE(17180)] "swingjs.api.Interface creating instance of swingjs.JSDummyApplet error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.871897:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSDummyApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.873535:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.875337:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/JSApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.876710:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.878172:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Container.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.880563:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.884683:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Component.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.888016:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageObserver.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.890104:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RootPaneContainer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.892342:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FlowLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.893975:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.896121:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ComponentOrientation.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.898028:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JRootPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.900255:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.905130:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/RequestFocusController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.907406:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/EventListenerList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.909366:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.912260:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.914675:INFO:CONSOLE(17180)] "swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel error 04-Jun-2026 15:43:31 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.914696:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/HTML5LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.916049:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.918390:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/FontUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.920011:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Font.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.922411:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/UIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.925640:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIDefaults.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.929117:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Color.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:31 [23414:23414:0604/154331.930807:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Paint.js", source: 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file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.067503:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InternalFrameFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.069128:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.070668:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingDefaultFocusTraversalPolicy.js", source: 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[23414:23414:0604/154332.078893:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSAppletUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.084437:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LightweightDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.086642:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AWTEventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.088328:INFO:CONSOLE(17180)] "testApplet loaded error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.088343:INFO:CONSOLE(291)] "testApplet loaded", source: swingjs/j2s/swingjs/JSUtil.js (291) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.096581:INFO:CONSOLE(17180)] "JSAppletViewer thread run1 mode=1 status=76 error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.096597:INFO:CONSOLE(17180)] "testApplet running jalview.bin.Jalview error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.096608:INFO:CONSOLE(291)] "testApplet running jalview.bin.Jalview", source: swingjs/j2s/swingjs/JSUtil.js (291) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.096869:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/PT.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.099830:INFO:CONSOLE(17180)] "Running main(args) in class jalview.bin.Jalview error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.105064:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/Constructor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.107843:INFO:CONSOLE(17180)] "JSUtil adding known access-control-allow-origin * for domain https://www.jalview.org error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.107875:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Console.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.112819:INFO:CONSOLE(17180)] "Platform adding known access-control-allow-origin * for domain https://www.jalview.org error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.112836:INFO:CONSOLE(17180)] "JSUtil adding known access-control-allow-origin * for domain http://www.jalview.org error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.112844:INFO:CONSOLE(17180)] "Platform adding known access-control-allow-origin * for domain http://www.jalview.org error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.112852:INFO:CONSOLE(17180)] "JSUtil adding known access-control-allow-origin * for domain http://www.compbio.dundee.ac.uk error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.112860:INFO:CONSOLE(17180)] "Platform adding known access-control-allow-origin * for domain http://www.compbio.dundee.ac.uk error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.112868:INFO:CONSOLE(17180)] "JSUtil adding known access-control-allow-origin * for domain https://www.compbio.dundee.ac.uk error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.112875:INFO:CONSOLE(17180)] "Platform adding known access-control-allow-origin * for domain https://www.compbio.dundee.ac.uk error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.112884:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/BootstrapArgs.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.115897:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Objects.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.117645:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/Arg.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.121437:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ChannelProperties.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.123433:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Properties.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.126815:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/File.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.128813:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/FileSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.131087:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.132504:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.134548:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/channel.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.145299:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/BufferedInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.146799:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/FilterInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.149828:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/InputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.151736:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/Closeable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.153960:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AutoCloseable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.155282:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/ByteArrayInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.157142:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/HttpUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.159276:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.161445:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/HttpURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.163160:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.165508:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/ContentHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.167722:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Rdr.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.169656:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/api/GenericLineReader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.171474:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AU.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.182149:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-16.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.184688:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ImageIcon.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.187549:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Icon.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.190199:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/SB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.192545:INFO:CONSOLE(17180)] "swingjs.api.Interface creating instance of swingjs.JSImagekit error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.192560:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSImagekit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.199180:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageConsumer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.207543:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.209751:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/BufferedImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.212468:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Image.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.214808:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/RenderedImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.216952:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ColorModel.js", source: 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[23414:23414:0604/154332.227489:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/Raster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.230105:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DataBufferInt.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.231984:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DataBuffer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.234360:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/DataStealer.js", source: 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[23414:23414:0604/154332.242290:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/java2d/StateTrackableDelegate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.246613:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Point.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.248461:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Point2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.251277:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/SinglePixelPackedSampleModel.js", source: 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[23414:23414:0604/154332.264163:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Rectangle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.266874:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Rectangle2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.272806:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/RectangularShape.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.275587:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Shape.js", source: 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[23414:23414:0604/154332.303738:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-64.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.310537:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-128.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.322357:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-256.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.328282:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-512.png", source: 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[23414:23414:0604/154332.355030:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Spliterators.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.359365:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Spliterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.365257:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/StreamSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.367764:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/StreamOpFlag.js", source: 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[23414:23414:0604/154332.378885:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/PipelineHelper.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.380571:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/BaseStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.382527:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/Stream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.385180:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/Function.js", source: 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[23414:23414:0604/154332.397020:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/Supplier.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.399102:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/StringJoiner.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.400748:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/BiConsumer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.402692:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/BinaryOperator.js", source: 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[23414:23414:0604/154332.410592:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/TerminalSink.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.411890:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/Sink.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.414270:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/Consumer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.417393:INFO:CONSOLE(26)] "launcher.appdir property not found error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.417611:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Cache.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.420175:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/datamodel/PDBEntry.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.422155:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureImportSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.424105:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.426122:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/Format.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.427891:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.429414:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleServiceProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.431298:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.434256:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/JRELocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.436105:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/ResourceBundleBasedAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.437989:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.440334:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.444076:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/SPILocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.446569:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AuxLocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.449715:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleDataMetaInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.451480:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/StringTokenizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.457756:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.459687:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/AccessController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.464306:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/DateFormatProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.466155:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AvailableLanguageTags.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.467860:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LanguageTag.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.470450:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/SimpleDateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.472926:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/AttributedCharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.474761:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/CharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.476939:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimeZone.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.512065:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.515236:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfoFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.519601:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/calendar/tzdb.dat", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.528452:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.530556:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInput.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.541920:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Calendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.544941:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/spi/CalendarProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.546788:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.548758:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/GregorianCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.551516:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.553072:INFO:CONSOLE(17180)] "swingjs.api.Interface creating instance of sun.util.calendar.Gregorian error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.553331:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/Gregorian.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.554619:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/BaseCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.556386:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/AbstractCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.558237:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataUtility.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.560358:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CalendarDataProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.561897:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleServiceProviderPool.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.563719:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/BreakIteratorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.565037:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/CollatorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.567400:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.568651:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DecimalFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.570860:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/NumberFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.572070:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CurrencyNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.574383:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.575940:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/TimeZoneNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.578035:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.579598:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedExceptionAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.581412:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ServiceLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.584309:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleResources.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.586297:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ref/ReferenceQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.589010:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/LocaleData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.591213:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.594955:INFO:CONSOLE(17180)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.594970:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/CalendarData.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.597018:INFO:CONSOLE(17180)] "JSUtil caching 1780 bytes for swingjs/j2s/sun/util/resources/CalendarData.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.597030:INFO:CONSOLE(17180)] "swingjs.api.Interface creating instance of java.util.PropertyResourceBundle error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.597246:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/PropertyResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.602080:INFO:CONSOLE(17180)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.602097:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.605602:INFO:CONSOLE(17180)] "JSUtil caching 1943 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.605622:INFO:CONSOLE(17180)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.605631:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.613263:INFO:CONSOLE(17180)] "JSUtil caching 1786 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.613284:INFO:CONSOLE(17180)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.613294:INFO:CONSOLE(17180)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.613308:INFO:CONSOLE(17180)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.613319:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarDate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.618163:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.620581:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.623589:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/FormatData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.625825:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/ParallelListResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.628515:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.630627:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en_GB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.633667:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/NumberFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.637586:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.640307:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.643413:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/FieldPosition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.646879:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DigitList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.647958:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/math/RoundingMode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.658607:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/LaunchUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.659835:INFO:CONSOLE(17180)] "Jalview non-release Version: TEST error 04-Jun-2026 15:43:32 Jalview non-release Installation: unknown error 04-Jun-2026 15:43:32 Channel: default error 04-Jun-2026 15:43:32 Build Date: unknown error 04-Jun-2026 15:43:32 Preferences file: unknown error 04-Jun-2026 15:43:32 Log file: unknown error 04-Jun-2026 15:43:32 Java version: 1.8 error 04-Jun-2026 15:43:32 Java home: https://. error 04-Jun-2026 15:43:32 Java launch class: unknown error 04-Jun-2026 15:43:32 Java platform: Mozilla/5.0 5.0 (X11) (Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/114.0.0.0 Safari/537.36) error 04-Jun-2026 15:43:32 Java LAF: SwingJS (swingjs.plaf.HTML5LookAndFeel) error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.660066:INFO:CONSOLE(26)] "Using default properties file '/TEMP/swingjs/.jalview_nonrelease_properties' error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.660212:INFO:CONSOLE(26)] "Falling back to properties file '/TEMP/swingjs/.jalview_properties' error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.660227:INFO:CONSOLE(26)] "Could not load bootstrap preferences file '/TEMP/swingjs/.jalview_properties' error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.660676:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.663440:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.665602:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/BuildDetails.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.667381:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/BuildDetailsI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.669234:INFO:CONSOLE(17180)] "Jalview non-release version: TEST (Source git-commit:8120bc1d99 [spike/na_hack_JAL-4673]) error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.669249:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/ArgsParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.671752:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/AppletParams.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.674786:INFO:CONSOLE(17180)] "AppletParams propName=debug argName=null appletName=debug value=false error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.674803:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.676795:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLogger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.682115:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerLog4j.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.684909:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Formatter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.696808:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Pattern.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.700195:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Matcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.703075:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/MatchResult.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.707367:INFO:CONSOLE(17180)] "INFO: Logging initialised at level: INFO error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.708214:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.709900:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.711723:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.714199:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/sifts/SiftsSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.721002:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/urls/IdOrgSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.731607:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/PIRFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.733348:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.735039:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileParse.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.736773:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileReaderI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.738607:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileWriterI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.740768:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/ArgParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.743271:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/JumboEnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.745806:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ArgParserUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.748266:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormats.js", source: 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[23414:23414:0604/154332.761362:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/jbgui/GPreferences.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.765470:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/JvSwingUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.767048:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.769935:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: 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[23414:23414:0604/154332.781463:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JFrame.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.783063:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSFrame.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.786122:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Window.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.790219:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/WindowConstants.js", source: 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[23414:23414:0604/154332.797284:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/StructureSelectionManagerProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.799112:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/SplashScreen.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.801936:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/HyperlinkListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.803215:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/async/SwingJSUtils.js", source: 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[23414:23414:0604/154332.817587:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphics2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.820656:INFO:CONSOLE(17180)] "JSGraphics2D pixelRatio is 1.0 error 04-Jun-2026 15:43:32 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.820846:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/RenderingHints.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.823774:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/AffineTransform.js", source: 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[23414:23414:0604/154332.838114:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSWindowUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.839802:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/WindowPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.841378:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.844089:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentListener.js", source: 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[23414:23414:0604/154332.865261:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.866826:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.868992:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.870450:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionListener.js", source: 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[23414:23414:0604/154332.881380:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ItemListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.883497:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AdjustmentListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.885547:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/TextListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.887547:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputMethodListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.889525:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.891083:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyBoundsListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.892925:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseWheelListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.896556:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.899702:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.902224:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/AbstractButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.904991:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ItemSelectable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.907900:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/MenuElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.910494:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.912265:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.915397:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.917391:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.919171:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.921424:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.924711:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/basic/BasicBorders.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.927405:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/ButtonListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.930686:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/AncestorListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.932013:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/LazyActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.934001:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ActionMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.935419:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.938020:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentInputMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.940356:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ComponentInputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.942094:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:32 [23414:23414:0604/154332.949788:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuBar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154332.952080:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultSingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154332.954880:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154332.957281:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuBarUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154332.961939:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/DefaultMenuLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154332.965185:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BoxLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154332.967722:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/DefaultLookup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154332.974839:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BorderFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154332.977200:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/BevelBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.013206:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JCheckBoxMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.016591:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JToggleButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.018748:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.024671:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.026921:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRadioButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.038477:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/APQHandlers.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.041109:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/MessageManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.043963:INFO:CONSOLE(17180)] "INFO: Getting messages for lang: en_GB error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.043982:INFO:CONSOLE(17180)] "JSUtil getting Java resource lang/Messages.properties error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.043991:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.067681:INFO:CONSOLE(17180)] "JSUtil caching 98579 bytes for swingjs/j2s/lang/Messages.properties error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.090002:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.093408:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.095443:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/font/FontRenderContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.099905:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.104757:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.106661:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.108502:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.129545:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ToolTipManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.134127:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.137076:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Timer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.140024:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.144577:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.146912:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPopupMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.151156:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.154564:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/JQueryUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.159953:INFO:CONSOLE(17180)] "JSUtil getting Java resource swingjs/jquery/j2sMenu.js error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.160173:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/j2sMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.162055:INFO:CONSOLE(17180)] "Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [24845] error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.163497:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuKeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.165789:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.169464:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/CompoundBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.173879:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JSeparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.178772:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.179710:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.199880:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyboardManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.224413:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SizeRequirements.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.234602:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.252968:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/JalviewChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.254823:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executors.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.257474:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/TimeUnit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.260439:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/LinkedBlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.262842:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.264296:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/BlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.266011:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/atomic/AtomicInteger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.267674:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/ReentrantLock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.269212:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Lock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.271024:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractQueuedSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.272961:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractOwnableSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.274584:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Condition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.276047:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadPoolExecutor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.277976:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/AbstractExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.279701:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.281723:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.283151:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/RejectedExecutionHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.286199:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.288132:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Semaphore.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.290200:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureSelectionManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.294057:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JDesktopPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.296950:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSDesktopPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.300201:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultDesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.302077:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.307845:INFO:CONSOLE(17180)] "INFO: JALVIEWJS: CREATED DESKTOP error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.309818:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/JalviewTaskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.312045:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Taskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.314881:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/Resizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.316580:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSFunction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.332206:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.334904:INFO:CONSOLE(17180)] "loading services error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.334921:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/slivka/SlivkaWSDiscoverer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.336592:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/api/AbstractWebServiceDiscoverer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.338440:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/api/WebServiceDiscovererI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.340050:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/api/WebServiceProviderI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.342221:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/uk/ac/dundee/compbio/slivkaclient/SlivkaClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.344580:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ImmutableCollections.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.348617:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/CompletableFuture.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.352990:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Future.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.354866:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/CompletionStage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.357424:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ForkJoinPool.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.360830:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/misc/Unsafe.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.366331:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/Field.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.369442:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ForkJoinTask.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.372470:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ref/WeakReference.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.374302:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ref/Reference.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.377540:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/RuntimePermission.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.378810:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/BasicPermission.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.381077:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/Permission.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.382359:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/Guard.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.385054:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/CancellationException.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.388215:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/ebi/JobDispatcherWSDiscoverer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.390987:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/jpred4/JPred4WSDiscoverer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.404267:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Commands.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.408057:INFO:CONSOLE(17180)] "WARN: Error when running commands error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.409602:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.411741:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/JalviewJSApp.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.416774:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/JalviewJSApi.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.445076:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/net/ssl/HttpsURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.451941:INFO:CONSOLE(10504)] "xhr.open binary async=false url=https://www.jalview.org/jalview-js//swingjs/j2s/build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.465928:INFO:CONSOLE(26)] "Non-fatal exception when checking version at https://www.jalview.org/jalview-js//swingjs/j2s/build_properties: error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.466022:INFO:CONSOLE(26)] "java.io.FileNotFoundException: opening https://www.jalview.org/jalview-js//swingjs/j2s/build_properties error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.466195:INFO:CONSOLE(26)] "anonymous.anonymous(Unknown Source) error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.467683:INFO:CONSOLE(10504)] "xhr.open binary async=false url=https://www.jalview.org/jalview-js//swingjs/j2s/build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.470731:INFO:CONSOLE(26)] "Non-fatal exception when checking version at https://www.jalview.org/jalview-js//swingjs/j2s/build_properties: error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.470749:INFO:CONSOLE(26)] "java.io.FileNotFoundException: opening https://www.jalview.org/jalview-js//swingjs/j2s/build_properties error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.470758:INFO:CONSOLE(26)] "anonymous.anonymous(Unknown Source) error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.474074:INFO:CONSOLE(17180)] "INFO: Reloading services for jalview.ws2.client.slivka.SlivkaWSDiscoverer error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.478492:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ListIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.481109:INFO:CONSOLE(17180)] "INFO: Fetching list of services from https://www.compbio.dundee.ac.uk/slivka/ error 04-Jun-2026 15:43:33 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.481124:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.490706:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/uk/ac/dundee/compbio/slivkaclient/SlivkaClientImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.493656:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/http/HttpClientFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.496486:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/http/SimpleHttpClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.498513:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/http/HttpClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.501151:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/StringBuffer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:33 [23414:23414:0604/154333.505855:INFO:CONSOLE(10504)] "xhr.open binary async=false url=https://www.compbio.dundee.ac.uk/slivka/api/services", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.505003:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/ByteArrayOutputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.507274:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/OutputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.516910:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/org/json/JSONObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.519525:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/org/json/JSONTokener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.521457:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/StringReader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.523356:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/Reader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.525163:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Readable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.527029:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/org/json/JSONArray.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.563039:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/uk/ac/dundee/compbio/slivkaclient/Parameter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.570291:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/uk/ac/dundee/compbio/slivkaclient/SlivkaService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.573071:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/ParsePosition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.593865:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/api/WebService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.596135:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/slivka/SlivkaParamStoreFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.598436:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/simple/StringParameter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.601412:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/simple/Option.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.604789:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/OptionI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.605415:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/ArgumentI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.613897:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/ParameterI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.616566:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/simple/BooleanOption.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.621939:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/simple/IntegerParameter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.624627:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/simple/DoubleParameter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.627736:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/params/SimpleParamDatastore.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.629285:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/params/ParamDatastoreI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.632621:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/alignment/AlignmentAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.638734:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/BaseAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.641342:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/api/ActionI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.645026:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/slivka/SlivkaAlignmentWSClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.647896:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/slivka/SlivkaWSClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.650918:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/api/WebServiceClientI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.651836:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/api/AlignmentWebServiceClientI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.653821:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/alignment/AlignmentProviderI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.656129:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/uk/ac/dundee/compbio/slivkaclient/Job.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.658442:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/api/JobStatus.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.660478:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/api/CredentialType.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.662495:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/annotation/AnnotationAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.667246:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/slivka/SlivkaAnnotationWSClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.670009:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/api/AnnotationWebServiceClientI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.671576:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/annotation/AnnotationProviderI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.681716:INFO:CONSOLE(17180)] "INFO: Reloading services for jalview.ws2.client.ebi.JobDispatcherWSDiscoverer error 04-Jun-2026 15:43:35 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.681910:INFO:CONSOLE(17180)] "INFO: Fetching list of services from https://www.ebi.ac.uk/Tools/services/rest/hmmer3_phmmer/ error 04-Jun-2026 15:43:35 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.682148:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/uk/ac/dundee/compbio/hmmerclient/PhmmerClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.684812:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/HttpClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.686841:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/impl/JQueryHttpClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.688574:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/HttpRequest.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.689982:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/impl/SimpleHttpRequestBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.691557:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/impl/HttpHeadersBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.693175:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TreeMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.705321:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/NavigableMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.712063:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/SortedMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.714301:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/impl/EmptyRequestBody.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.716171:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/impl/ImmutableHttpRequest.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.717895:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/HttpHeaders.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.719550:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TreeSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.721209:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/NavigableSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.722756:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/SortedSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.724935:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/HttpResponse.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.727416:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Optional.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.735704:INFO:CONSOLE(9663)] "xhr.open async=false url=https://www.ebi.ac.uk/Tools/services/rest/hmmer3_phmmer/?", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.813277:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/nio/charset/StandardCharsets.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.815342:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/nio/charset/Charset.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.817567:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSCharSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.819198:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/StandardCharsets.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.821280:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/US_ASCII.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.823255:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/HistoricallyNamedCharset.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.825775:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/ISO_8859_1.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.827238:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/UTF_8.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.830296:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/Unicode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.833100:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/UTF_16BE.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.839010:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/UTF_16LE.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.845312:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/nio/cs/UTF_16.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.848042:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/impl/ResponseInfoImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.849789:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/io/github/warownia1/simplehttpclient/impl/SimpleHttpResponse.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.856608:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/ebi/ParamStores.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.868224:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/hmmer/PhmmerAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.870024:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/ebi/PhmmerWSClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.874158:INFO:CONSOLE(17180)] "INFO: Reloading services for jalview.ws2.client.jpred4.JPred4WSDiscoverer error 04-Jun-2026 15:43:35 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.874179:INFO:CONSOLE(17180)] "INFO: Fetching list of services from https://www.compbio.dundee.ac.uk/jpred4/ error 04-Jun-2026 15:43:35 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (17180) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.874187:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/uk/ac/dundee/compbio/jpred/JPredClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.876771:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/secstructpred/SecStructPredAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.878774:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/jpred4/JPred4WSClient.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.880592:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/client/api/SecStructPredWebServiceClientI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.883474:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws2/actions/secstructpred/SecStructPredProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.885626:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/uk/ac/dundee/compbio/jpred/JPredRequest.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.903231:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/HTML5CanvasContext2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.906131:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.908216:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunGraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.927103:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/CausedFocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.927494:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:35 [23414:23414:0604/154335.930483:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimSort.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 04-Jun-2026 15:43:36 [23414:23414:0604/154336.020522:WARNING:pref_notifier_impl.cc(41)] Pref observer for media_router.cast_allow_all_ips found at shutdown. build 04-Jun-2026 15:43:36 build 04-Jun-2026 15:43:36 > Task :jalviewjsLaunchTest build 04-Jun-2026 15:43:36 Found line '[23414:23414:0604/154333.307845:INFO:CONSOLE(17180)] "INFO: JALVIEWJS: CREATED DESKTOP' build 04-Jun-2026 15:43:36 :jalviewjsLaunchTest (Thread[included builds,5,main]) completed. Took 6.928 secs. build 04-Jun-2026 15:43:36 :jalviewjs (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:36 build 04-Jun-2026 15:43:36 > Task :jalviewjs build 04-Jun-2026 15:43:36 Skipping task ':jalviewjs' as it has no actions. build 04-Jun-2026 15:43:36 :jalviewjs (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:36 :jalviewjsSiteTar (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:38 build 04-Jun-2026 15:43:38 > Task :jalviewjsSiteTar build 04-Jun-2026 15:43:38 Execution optimizations have been disabled for task ':jalviewjsSiteTar' to ensure correctness due to the following reasons: build 04-Jun-2026 15:43:38 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB59-JOB1/build/jalviewjs/site'. Reason: Task ':jalviewjsSiteTar' uses this output of task ':jalviewjsCopyStderrLaunchFile' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 04-Jun-2026 15:43:38 Invalidating VFS because task ':jalviewjsSiteTar' failed validation build 04-Jun-2026 15:43:38 Caching disabled for task ':jalviewjsSiteTar' because: build 04-Jun-2026 15:43:38 Build cache is disabled build 04-Jun-2026 15:43:38 Task ':jalviewjsSiteTar' is not up-to-date because: build 04-Jun-2026 15:43:38 Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. build 04-Jun-2026 15:43:38 :jalviewjsSiteTar (Thread[included builds,5,main]) completed. Took 2.665 secs. build 04-Jun-2026 15:43:38 producer locations for task group 1 (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:38 producer locations for task group 1 (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:38 producer locations for task group 2 (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:38 producer locations for task group 2 (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:38 producer locations for task group 3 (Thread[included builds,5,main]) started. build 04-Jun-2026 15:43:38 producer locations for task group 3 (Thread[included builds,5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:38 producer locations for task group 4 (Thread[Execution worker for ':',5,main]) started. build 04-Jun-2026 15:43:38 producer locations for task group 4 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 04-Jun-2026 15:43:38 build 04-Jun-2026 15:43:38 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. build 04-Jun-2026 15:43:38 build 04-Jun-2026 15:43:38 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. build 04-Jun-2026 15:43:38 build 04-Jun-2026 15:43:38 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings build 04-Jun-2026 15:43:38 build 04-Jun-2026 15:43:38 Execution optimizations have been disabled for 3 invalid unit(s) of work during this build to ensure correctness. build 04-Jun-2026 15:43:38 Please consult deprecation warnings for more details. build 04-Jun-2026 15:43:38 build 04-Jun-2026 15:43:38 BUILD SUCCESSFUL in 2m 7s build 04-Jun-2026 15:43:38 29 actionable tasks: 28 executed, 1 up-to-date simple 04-Jun-2026 15:43:39 Finished task 'JalviewJS build site and distributable tar' with result: Success simple 04-Jun-2026 15:43:39 Running post build plugin 'NCover Results Collector' simple 04-Jun-2026 15:43:39 Running post build plugin 'Artifact Copier' simple 04-Jun-2026 15:43:39 Publishing an artifact: JalviewJS site tar file simple 04-Jun-2026 15:43:39 Finished publishing of artifact Shared artifact: [JalviewJS site tar file], pattern: [jalviewjs-site-*.tar.gz] anchored at: [build/distributions/] in 90.02 ms simple 04-Jun-2026 15:43:39 Publishing an artifact: JalviewJS site simple 04-Jun-2026 15:43:40 Finished publishing of artifact Shared artifact: [JalviewJS site], pattern: [**/*] anchored at: [build/jalviewjs/site] in 1.063 s simple 04-Jun-2026 15:43:40 Running post build plugin 'Artifactory Release Management Staging' simple 04-Jun-2026 15:43:40 Running post build plugin 'Artifactory Build Info Copier' simple 04-Jun-2026 15:43:40 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 04-Jun-2026 15:43:40 Running post build plugin 'npm Cache Cleanup' simple 04-Jun-2026 15:43:40 Running post build plugin 'Clover Results Collector' simple 04-Jun-2026 15:43:40 Running post build plugin 'Docker Container Cleanup' simple 04-Jun-2026 15:43:40 Finalising the build... simple 04-Jun-2026 15:43:40 Stopping timer. simple 04-Jun-2026 15:43:40 Build JB-GJB59-JOB1-7 completed. simple 04-Jun-2026 15:43:40 Running on server: post build plugin 'NCover Results Collector' simple 04-Jun-2026 15:43:40 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 04-Jun-2026 15:43:40 Running on server: post build plugin 'Clover Delta Calculator' simple 04-Jun-2026 15:43:40 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 04-Jun-2026 15:43:40 All post build plugins have finished simple 04-Jun-2026 15:43:40 Generating build results summary... simple 04-Jun-2026 15:43:40 Saving build results to disk... simple 04-Jun-2026 15:43:40 Logging substituted variables... simple 04-Jun-2026 15:43:40 Indexing build results... simple 04-Jun-2026 15:43:40 Finished building JB-GJB59-JOB1-7.