simple 28-Nov-2025 17:46:25 Build Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Default Job #3 (JB-GJB57-JOB1-3) started building on agent Default Agent simple 28-Nov-2025 17:46:25 simple 28-Nov-2025 17:46:25 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 simple 28-Nov-2025 17:46:25 Executing build Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Default Job #3 (JB-GJB57-JOB1-3) simple 28-Nov-2025 17:46:25 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 28-Nov-2025 17:46:25 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 simple 28-Nov-2025 17:46:25 Updating source code to revision: 6f2c311824a96fc172e1713db11e8c1cdb24e48c simple 28-Nov-2025 17:46:25 Fetching 'refs/heads/bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest' from 'https://gitlab.jalview.org/jalview/jalview.git'. simple 28-Nov-2025 17:46:25 Checking out revision 6f2c311824a96fc172e1713db11e8c1cdb24e48c. simple 28-Nov-2025 17:46:25 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 simple 28-Nov-2025 17:46:25 c0746f1..6f2c311 bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest -> origin/bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest simple 28-Nov-2025 17:46:26 Already on 'bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest' simple 28-Nov-2025 17:46:26 Your branch is behind 'origin/bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest' by 3 commits, and can be fast-forwarded. simple 28-Nov-2025 17:46:26 (use "git pull" to update your local branch) simple 28-Nov-2025 17:46:26 HEAD is now at 6f2c311 JAL-4633 attempted workaround - really need a j2stest to verify that the j2s-ed expression is correct. simple 28-Nov-2025 17:46:26 Updated source code to revision: 6f2c311824a96fc172e1713db11e8c1cdb24e48c simple 28-Nov-2025 17:46:26 Finished task 'Checkout Default Repository' with result: Success simple 28-Nov-2025 17:46:26 Running pre-build action: VCS Version Collector simple 28-Nov-2025 17:46:26 Running pre-build action: Artifactory Release Staging simple 28-Nov-2025 17:46:26 Starting task 'JalviewJS build site and distributable tar' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 28-Nov-2025 17:46:26 Bamboo Artifactory Plugin version: 2.6.2 command 28-Nov-2025 17:46:26 Beginning to execute external process for build 'Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Default Job #3 (JB-GJB57-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest --info clean eclipse jalviewjsCreateJ2sSettings jalviewjs jalviewjsSiteTar\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_repository_revision_number=6f2c311824a96fc172e1713db11e8c1cdb24e48c\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GJB57-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GJB57-JOB1\nbamboo_shortPlanName=bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GJB57-JOB1-3\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_repository_46498597_previous_revision_number=c0746f1378bd64b7cf72b082eca210d21f86feff\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_shortPlanKey=GJB57\nbamboo_shortJobKey=JOB1\nbamboo_repository_46498597_name=Jalview Gitlab\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6f2c311824a96fc172e1713db11e8c1cdb24e48c\nbamboo_buildTimeStamp=2025-11-28T17:46:25.297Z\nbamboo_repository_previous_revision_number=c0746f1378bd64b7cf72b082eca210d21f86feff\nbamboo_repository_46498597_git_branch=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_planRepository_previousRevision=c0746f1378bd64b7cf72b082eca210d21f86feff\nbamboo_repository_git_branch=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_buildResultKey=JB-GJB57-JOB1-3\nbamboo_repository_branch_name=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_buildPlanName=Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6f2c311824a96fc172e1713db11e8c1cdb24e48c\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=c0746f1378bd64b7cf72b082eca210d21f86feff\nbamboo_planRepository_branchDisplayName=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_repository_46498597_revision_number=6f2c311824a96fc172e1713db11e8c1cdb24e48c\nbamboo_plan_storageTag=plan-46302765\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1\nbamboo_planKey=JB-GJB57\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_repository_46498597_git_username=\nbamboo_planRepository_username=\nbamboo_repository_46498597_branch_name=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_repository_46498597_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 28-Nov-2025 17:46:27 Initialized native services in: /srv/bamboo/home/bamboo/.gradle/native build 28-Nov-2025 17:46:27 Initialized jansi services in: /srv/bamboo/home/bamboo/.gradle/native build 28-Nov-2025 17:46:27 Removing 0 daemon stop events from registry build 28-Nov-2025 17:46:27 Starting a Gradle Daemon (subsequent builds will be faster) build 28-Nov-2025 17:46:27 Starting process 'Gradle build daemon'. Working directory: /srv/bamboo/home/bamboo/.gradle/daemon/7.4.2 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java --add-opens java.base/java.util=ALL-UNNAMED --add-opens java.base/java.lang=ALL-UNNAMED --add-opens java.base/java.lang.invoke=ALL-UNNAMED --add-opens java.base/java.util=ALL-UNNAMED --add-opens java.prefs/java.util.prefs=ALL-UNNAMED --add-opens java.prefs/java.util.prefs=ALL-UNNAMED --add-opens java.base/java.nio.charset=ALL-UNNAMED --add-opens java.base/java.net=ALL-UNNAMED --add-opens java.base/java.util.concurrent.atomic=ALL-UNNAMED -XX:MaxMetaspaceSize=256m -XX:+HeapDumpOnOutOfMemoryError -Xms256m -Xmx512m -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/home/bamboo/buildtools/gradle-7.4.2/lib/gradle-launcher-7.4.2.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 7.4.2 build 28-Nov-2025 17:46:27 Successfully started process 'Gradle build daemon' build 28-Nov-2025 17:46:29 An attempt to start the daemon took 1.589 secs. build 28-Nov-2025 17:46:29 The client will now receive all logging from the daemon (pid: 24471). The daemon log file: /srv/bamboo/home/bamboo/.gradle/daemon/7.4.2/daemon-24471.out.log build 28-Nov-2025 17:46:29 Starting build in new daemon [memory: 512 MiB] build 28-Nov-2025 17:46:29 Using 4 worker leases. build 28-Nov-2025 17:46:30 Watching the file system is configured to be enabled if available build 28-Nov-2025 17:46:30 File system watching is inactive build 28-Nov-2025 17:46:32 Starting Build build 28-Nov-2025 17:46:32 Settings evaluated using settings file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/settings.gradle'. build 28-Nov-2025 17:46:32 Projects loaded. Root project using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build.gradle'. build 28-Nov-2025 17:46:32 Included projects: [root project 'jalview'] build 28-Nov-2025 17:46:34 build 28-Nov-2025 17:46:34 > Configure project : build 28-Nov-2025 17:46:34 Evaluating root project 'jalview' using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build.gradle'. build 28-Nov-2025 17:46:35 Using properties from file './utils/channels/default/channel_gradle.properties' build 28-Nov-2025 17:46:35 JALVIEW_VERSION is set to '2.11.5.1' build 28-Nov-2025 17:46:35 HEADLESS BUILD build 28-Nov-2025 17:46:35 J2S ENABLED build 28-Nov-2025 17:46:35 Using a LOCAL profile. build 28-Nov-2025 17:46:36 file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/main/java', not found build 28-Nov-2025 17:46:36 file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/doc_build', not found build 28-Nov-2025 17:46:36 file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/classes', not found build 28-Nov-2025 17:46:36 eclipseDir exists build 28-Nov-2025 17:46:36 All projects evaluated. build 28-Nov-2025 17:46:36 Selected primary task 'clean' from project : build 28-Nov-2025 17:46:36 Selected primary task 'eclipse' from project : build 28-Nov-2025 17:46:36 Selected primary task 'jalviewjsCreateJ2sSettings' from project : build 28-Nov-2025 17:46:36 Selected primary task 'jalviewjs' from project : build 28-Nov-2025 17:46:36 Selected primary task 'jalviewjsSiteTar' from project : build 28-Nov-2025 17:46:37 Tasks to be executed: [task ':clean', task ':eclipseClasspath', task ':eclipseJdt', task ':eclipseProject', task ':eclipse', task ':jalviewjsCreateJ2sSettings', task ':jalviewjsEclipsePaths', task ':jalviewjsEclipseCopyDropins', task ':jalviewjsSetEclipseWorkspace', task ':jalviewjsEclipseSetup', task ':jalviewjsEnableAltFileProperty', task ':eclipseSetup', task ':jalviewjsProjectImport', task ':jalviewjsTranspile', task ':jalviewjsCopyTransferSiteJs', task ':jalviewjsTransferUnzipLib', task ':jalviewjsTransferUnzipSwingJs', task ':jalviewjsTransferUnzipAllLibs', task ':jalviewjsSyncAllLibs', task ':copyResources', task ':createBuildProperties', task ':jalviewjsSyncBuildProperties', task ':jalviewjsBuildAllCores', task ':jalviewjsPublishCoreTemplates', task ':jalviewjsSyncCore', task ':copyChannelResources', task ':buildResources', task ':jalviewjsSyncResources', task ':jalviewjsSyncSiteResources', task ':jalviewjsPrepareSite', task ':jalviewjsBuildSite', task ':cleanJalviewjsChromiumUserDir', task ':jalviewjsChromiumProfile', task ':jalviewjsCopyStderrLaunchFile', task ':jalviewjsLaunchTest', task ':jalviewjs', task ':jalviewjsSiteTar'] build 28-Nov-2025 17:46:37 Tasks that were excluded: [] build 28-Nov-2025 17:46:37 :clean (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :clean build 28-Nov-2025 17:46:38 Caching disabled for task ':clean' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Task ':clean' is not up-to-date because: build 28-Nov-2025 17:46:38 Task has not declared any outputs despite executing actions. build 28-Nov-2025 17:46:38 :clean (Thread[Execution worker for ':',5,main]) completed. Took 0.743 secs. build 28-Nov-2025 17:46:38 :jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :jalviewjsEclipsePaths build 28-Nov-2025 17:46:38 Caching disabled for task ':jalviewjsEclipsePaths' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Task ':jalviewjsEclipsePaths' is not up-to-date because: build 28-Nov-2025 17:46:38 Task has not declared any outputs despite executing actions. build 28-Nov-2025 17:46:38 Running task jalviewjsEclipsePaths as IN_ECLIPSE=false build 28-Nov-2025 17:46:38 ECLIPSE VERSION=4.28.0 build 28-Nov-2025 17:46:38 :jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs. build 28-Nov-2025 17:46:38 destroyer locations for task group 0 (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 destroyer locations for task group 0 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:46:38 :eclipseClasspath (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :eclipseClasspath build 28-Nov-2025 17:46:38 Caching disabled for task ':eclipseClasspath' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Task ':eclipseClasspath' is not up-to-date because: build 28-Nov-2025 17:46:38 Task.upToDateWhen is false. build 28-Nov-2025 17:46:38 :eclipseClasspath (Thread[Execution worker for ':',5,main]) completed. Took 0.449 secs. build 28-Nov-2025 17:46:38 :eclipseJdt (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :eclipseJdt build 28-Nov-2025 17:46:38 Caching disabled for task ':eclipseJdt' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Task ':eclipseJdt' is not up-to-date because: build 28-Nov-2025 17:46:38 Task.upToDateWhen is false. build 28-Nov-2025 17:46:38 :eclipseJdt (Thread[Execution worker for ':',5,main]) completed. Took 0.077 secs. build 28-Nov-2025 17:46:38 :eclipseProject (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :eclipseProject build 28-Nov-2025 17:46:38 Caching disabled for task ':eclipseProject' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Task ':eclipseProject' is not up-to-date because: build 28-Nov-2025 17:46:38 Task.upToDateWhen is false. build 28-Nov-2025 17:46:38 :eclipseProject (Thread[Execution worker for ':',5,main]) completed. Took 0.015 secs. build 28-Nov-2025 17:46:38 :eclipse (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :eclipse build 28-Nov-2025 17:46:38 Skipping task ':eclipse' as it has no actions. build 28-Nov-2025 17:46:38 :eclipse (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:46:38 :jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :jalviewjsCreateJ2sSettings build 28-Nov-2025 17:46:38 Caching disabled for task ':jalviewjsCreateJ2sSettings' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Task ':jalviewjsCreateJ2sSettings' is not up-to-date because: build 28-Nov-2025 17:46:38 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/config/j2s has been removed. build 28-Nov-2025 17:46:38 Output property 'outputFile' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/config/j2s has been removed. build 28-Nov-2025 17:46:38 :jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) completed. Took 0.049 secs. build 28-Nov-2025 17:46:38 :jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :jalviewjsEclipseCopyDropins build 28-Nov-2025 17:46:38 Caching disabled for task ':jalviewjsEclipseCopyDropins' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Task ':jalviewjsEclipseCopyDropins' is not up-to-date because: build 28-Nov-2025 17:46:38 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins has been removed. build 28-Nov-2025 17:46:38 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins/com.seeq.eclipse.importprojects.jar has been removed. build 28-Nov-2025 17:46:38 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins/net.sf.j2s.core-j11.jar has been removed. build 28-Nov-2025 17:46:38 :jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) completed. Took 0.025 secs. build 28-Nov-2025 17:46:38 :jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :jalviewjsSetEclipseWorkspace build 28-Nov-2025 17:46:38 Caching disabled for task ':jalviewjsSetEclipseWorkspace' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Task ':jalviewjsSetEclipseWorkspace' is not up-to-date because: build 28-Nov-2025 17:46:38 Task.upToDateWhen is false. build 28-Nov-2025 17:46:38 Running task jalviewjsSetEclipseWorkspace as IN_ECLIPSE=false build 28-Nov-2025 17:46:38 NEW ECLIPSE WORKSPACE: /tmp/groovy-generated-tmpdir-13219047944098099682 build 28-Nov-2025 17:46:38 :jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) completed. Took 0.011 secs. build 28-Nov-2025 17:46:38 :jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :jalviewjsEclipseSetup build 28-Nov-2025 17:46:38 Skipping task ':jalviewjsEclipseSetup' as it has no actions. build 28-Nov-2025 17:46:38 :jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:46:38 :jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :jalviewjsEnableAltFileProperty UP-TO-DATE build 28-Nov-2025 17:46:38 Caching disabled for task ':jalviewjsEnableAltFileProperty' because: build 28-Nov-2025 17:46:38 Build cache is disabled build 28-Nov-2025 17:46:38 Skipping task ':jalviewjsEnableAltFileProperty' as it is up-to-date. build 28-Nov-2025 17:46:38 :jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) completed. Took 0.004 secs. build 28-Nov-2025 17:46:38 :eclipseSetup (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:38 build 28-Nov-2025 17:46:38 > Task :eclipseSetup build 28-Nov-2025 17:46:38 Skipping task ':eclipseSetup' as it has no actions. build 28-Nov-2025 17:46:38 :eclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:46:38 :jalviewjsProjectImport (Thread[Execution worker for ':',5,main]) started. error 28-Nov-2025 17:46:40 SLF4J: No SLF4J providers were found. error 28-Nov-2025 17:46:40 SLF4J: Defaulting to no-operation (NOP) logger implementation error 28-Nov-2025 17:46:40 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details. build 28-Nov-2025 17:46:40 build 28-Nov-2025 17:46:40 > Task :jalviewjsProjectImport build 28-Nov-2025 17:46:40 Caching disabled for task ':jalviewjsProjectImport' because: build 28-Nov-2025 17:46:40 Build cache is disabled build 28-Nov-2025 17:46:40 Task ':jalviewjsProjectImport' is not up-to-date because: build 28-Nov-2025 17:46:40 Task.upToDateWhen is false. build 28-Nov-2025 17:46:40 Running task jalviewjsProjectImport as IN_ECLIPSE=false build 28-Nov-2025 17:46:40 Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application com.seeq.eclipse.importprojects.headlessimport -data /tmp/groovy-generated-tmpdir-13219047944098099682 -import /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s build 28-Nov-2025 17:46:40 Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse'' build 28-Nov-2025 17:46:53 :jalviewjsProjectImport (Thread[Execution worker for ':',5,main]) completed. Took 15.158 secs. build 28-Nov-2025 17:46:53 :jalviewjsTranspile (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:46:55 build 28-Nov-2025 17:46:55 > Task :jalviewjsTranspile build 28-Nov-2025 17:46:55 Caching disabled for task ':jalviewjsTranspile' because: build 28-Nov-2025 17:46:55 Build cache is disabled build 28-Nov-2025 17:46:55 Task ':jalviewjsTranspile' is not up-to-date because: build 28-Nov-2025 17:46:55 Task.upToDateWhen is false. build 28-Nov-2025 17:46:55 Running task jalviewjsTranspile as IN_ECLIPSE=false build 28-Nov-2025 17:46:55 Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application org.eclipse.jdt.apt.core.aptBuild -data /tmp/groovy-generated-tmpdir-13219047944098099682 -cleanBuild jalview --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s build 28-Nov-2025 17:46:55 Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse'' error 28-Nov-2025 17:46:55 SLF4J: No SLF4J providers were found. error 28-Nov-2025 17:46:55 SLF4J: Defaulting to no-operation (NOP) logger implementation error 28-Nov-2025 17:46:55 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details. build 28-Nov-2025 17:46:57 Invoking 'Java Builder' on '/jalview'. build 28-Nov-2025 17:46:57 net.sf.j2s.core.3.3.1/3.3.1-v1 started build 28-Nov-2025 17:46:57 J2S CompilationParticipant started build 28-Nov-2025 17:46:57 J2S isActive true /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 build 28-Nov-2025 17:46:57 J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 build 28-Nov-2025 17:46:59 J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 build 28-Nov-2025 17:46:59 Cleaning output folder for jalview build 28-Nov-2025 17:46:59 Build done build 28-Nov-2025 17:46:59 Invoking 'Gradle Project Builder' on '/jalview'. build 28-Nov-2025 17:46:59 Invoking 'Java Builder' on '/jalview'. build 28-Nov-2025 17:46:59 J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 build 28-Nov-2025 17:46:59 Preparing to build jalview build 28-Nov-2025 17:46:59 Cleaning output folder for jalview build 28-Nov-2025 17:46:59 J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 build 28-Nov-2025 17:46:59 Copying resources to the output folder build 28-Nov-2025 17:46:59 Analyzing sources build 28-Nov-2025 17:46:59 J2S buildStarting 1108 files, contexts.size() = 1, isBatch=true build 28-Nov-2025 17:46:59 Compiling jalview/src/com/github/reinert/jjschema build 28-Nov-2025 17:47:03 Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:03 (Found 1 warning) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:03 (Found 2 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:03 (Found 3 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:03 (Found 4 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 5 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 9 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 12 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 13 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 14 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 15 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 37 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 38 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 46 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 47 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 48 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 49 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 50 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 51 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 52 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 59 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 63 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 67 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 69 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 89 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 90 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 91 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 98 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 108 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 113 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 114 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 115 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 119 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 120 warnings) Compiling jalview/src/com/stevesoft/pat build 28-Nov-2025 17:47:04 (Found 120 warnings) Compiling jalview/src/com/stevesoft/pat/wrap build 28-Nov-2025 17:47:04 (Found 124 warnings) Compiling jalview/src/darrylbu/util build 28-Nov-2025 17:47:04 (Found 124 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2 build 28-Nov-2025 17:47:04 (Found 126 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2 build 28-Nov-2025 17:47:04 (Found 135 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2 build 28-Nov-2025 17:47:04 (Found 138 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2/port build 28-Nov-2025 17:47:04 (Found 138 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 145 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 152 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 190 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 197 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 253 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 285 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 292 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 360 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 363 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 366 warnings) Compiling jalview/src/ext/vamsas build 28-Nov-2025 17:47:04 (Found 367 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:04 (Found 372 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 375 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 382 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 387 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 420 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 428 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 429 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 430 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 431 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 433 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 434 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 435 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 441 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 448 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 474 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 478 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 480 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 515 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 581 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 582 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 588 warnings) Compiling jalview/src/jalview/analysis build 28-Nov-2025 17:47:05 (Found 588 warnings) Compiling jalview/src/jalview/analysis/scoremodels build 28-Nov-2025 17:47:05 (Found 598 warnings) Compiling jalview/src/jalview/analytics build 28-Nov-2025 17:47:05 (Found 598 warnings) Compiling jalview/src/jalview/api build 28-Nov-2025 17:47:05 (Found 598 warnings) Compiling jalview/src/jalview/api/analysis build 28-Nov-2025 17:47:05 (Found 599 warnings) Compiling jalview/src/jalview/api/structures build 28-Nov-2025 17:47:05 (Found 602 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 658 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 667 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 668 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 673 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 674 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 676 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 687 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 689 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 694 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 695 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 696 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 697 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 699 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 701 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 702 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 704 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 705 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 710 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 711 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 712 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 714 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 715 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 717 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 725 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 735 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 736 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 737 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 739 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 740 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 745 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 748 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 785 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 787 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 788 warnings) Compiling jalview/src/jalview/appletgui build 28-Nov-2025 17:47:06 (Found 788 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 792 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 794 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 795 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 802 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 804 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 3 errors + 862 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 3 errors + 867 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 3 errors + 869 warnings) Compiling jalview/src/jalview/bin build 28-Nov-2025 17:47:07 (Found 3 errors + 869 warnings) Compiling jalview/src/jalview/bin/argparser build 28-Nov-2025 17:47:07 (Found 3 errors + 870 warnings) Compiling jalview/src/jalview/bin/argparser build 28-Nov-2025 17:47:07 (Found 3 errors + 872 warnings) Compiling jalview/src/jalview/bin/argparser build 28-Nov-2025 17:47:07 (Found 3 errors + 873 warnings) Compiling jalview/src/jalview/bin/argparser build 28-Nov-2025 17:47:07 (Found 3 errors + 873 warnings) Compiling jalview/src/jalview/bin/groovy build 28-Nov-2025 17:47:07 (Found 3 errors + 873 warnings) Compiling jalview/src/jalview/commands build 28-Nov-2025 17:47:07 (Found 3 errors + 873 warnings) Compiling jalview/src/jalview/controller build 28-Nov-2025 17:47:07 (Found 3 errors + 873 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 886 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 887 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 888 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 891 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 892 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 893 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 899 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 903 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 905 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 906 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 907 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 908 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 913 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 914 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 922 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 923 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 924 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 927 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 933 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 937 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 941 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:07 (Found 3 errors + 943 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:08 (Found 3 errors + 944 warnings) Compiling jalview/src/jalview/datamodel build 28-Nov-2025 17:47:08 (Found 3 errors + 945 warnings) Compiling jalview/src/jalview/datamodel/annotations build 28-Nov-2025 17:47:08 (Found 3 errors + 945 warnings) Compiling jalview/src/jalview/datamodel/features build 28-Nov-2025 17:47:08 (Found 3 errors + 945 warnings) Compiling jalview/src/jalview/exceptions build 28-Nov-2025 17:47:08 (Found 3 errors + 945 warnings) Compiling jalview/src/jalview/ext/android build 28-Nov-2025 17:47:08 (Found 3 errors + 945 warnings) Compiling jalview/src/jalview/ext/ensembl build 28-Nov-2025 17:47:08 (Found 3 errors + 947 warnings) Compiling jalview/src/jalview/ext/ensembl build 28-Nov-2025 17:47:08 (Found 3 errors + 949 warnings) Compiling jalview/src/jalview/ext/ensembl build 28-Nov-2025 17:47:08 (Found 3 errors + 950 warnings) Compiling jalview/src/jalview/ext/ensembl build 28-Nov-2025 17:47:08 (Found 3 errors + 952 warnings) Compiling jalview/src/jalview/ext/ensembl build 28-Nov-2025 17:47:08 (Found 3 errors + 955 warnings) Compiling jalview/src/jalview/ext/htsjdk build 28-Nov-2025 17:47:08 (Found 3 errors + 956 warnings) Compiling jalview/src/jalview/ext/htsjdk build 28-Nov-2025 17:47:08 (Found 3 errors + 962 warnings) Compiling jalview/src/jalview/ext/jmol build 28-Nov-2025 17:47:08 (Found 3 errors + 966 warnings) Compiling jalview/src/jalview/ext/paradise build 28-Nov-2025 17:47:08 (Found 3 errors + 966 warnings) Compiling jalview/src/jalview/ext/pymol build 28-Nov-2025 17:47:08 (Found 3 errors + 968 warnings) Compiling jalview/src/jalview/ext/pymol build 28-Nov-2025 17:47:08 (Found 3 errors + 968 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera build 28-Nov-2025 17:47:08 (Found 3 errors + 969 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera build 28-Nov-2025 17:47:08 (Found 3 errors + 970 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera build 28-Nov-2025 17:47:08 (Found 3 errors + 970 warnings) Compiling jalview/src/jalview/ext/so build 28-Nov-2025 17:47:08 (Found 3 errors + 970 warnings) Compiling jalview/src/jalview/ext/varna build 28-Nov-2025 17:47:08 (Found 3 errors + 970 warnings) Compiling jalview/src/jalview/fts/api build 28-Nov-2025 17:47:08 (Found 3 errors + 971 warnings) Compiling jalview/src/jalview/fts/api build 28-Nov-2025 17:47:08 (Found 3 errors + 972 warnings) Compiling jalview/src/jalview/fts/core build 28-Nov-2025 17:47:08 (Found 3 errors + 975 warnings) Compiling jalview/src/jalview/fts/core build 28-Nov-2025 17:47:08 (Found 3 errors + 976 warnings) Compiling jalview/src/jalview/fts/core build 28-Nov-2025 17:47:08 (Found 3 errors + 977 warnings) Compiling jalview/src/jalview/fts/core build 28-Nov-2025 17:47:08 (Found 3 errors + 977 warnings) Compiling jalview/src/jalview/fts/service/alphafold build 28-Nov-2025 17:47:08 (Found 3 errors + 977 warnings) Compiling jalview/src/jalview/fts/service/pdb build 28-Nov-2025 17:47:08 (Found 3 errors + 984 warnings) Compiling jalview/src/jalview/fts/service/pdb build 28-Nov-2025 17:47:08 (Found 3 errors + 984 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons build 28-Nov-2025 17:47:08 (Found 3 errors + 986 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons build 28-Nov-2025 17:47:08 (Found 3 errors + 990 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons build 28-Nov-2025 17:47:08 (Found 3 errors + 994 warnings) Compiling jalview/src/jalview/fts/service/uniprot build 28-Nov-2025 17:47:08 (Found 3 errors + 994 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:08 (Found 3 errors + 995 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 997 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 998 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 999 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1000 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1001 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1002 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1003 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1009 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1012 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1013 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1014 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1023 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1053 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1054 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1056 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1057 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1058 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1063 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1064 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1065 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1070 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1071 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1075 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1080 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1081 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1083 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1084 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1085 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1086 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1087 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1093 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1094 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1095 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1096 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1097 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1099 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1100 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1101 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1104 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1106 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1113 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1115 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1117 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1118 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1119 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1122 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1126 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1135 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1144 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1147 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1148 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1149 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1151 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1152 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1154 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1160 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1162 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:10 (Found 3 errors + 1163 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1164 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1224 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1232 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1233 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1260 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1263 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1270 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1328 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1341 warnings) Compiling jalview/src/jalview/gui build 28-Nov-2025 17:47:11 (Found 3 errors + 1343 warnings) Compiling jalview/src/jalview/gui/structurechooser build 28-Nov-2025 17:47:11 (Found 3 errors + 1345 warnings) Compiling jalview/src/jalview/gui/structurechooser build 28-Nov-2025 17:47:11 (Found 3 errors + 1350 warnings) Compiling jalview/src/jalview/gui/structurechooser build 28-Nov-2025 17:47:11 (Found 3 errors + 1350 warnings) Compiling jalview/src/jalview/httpserver build 28-Nov-2025 17:47:11 (Found 3 errors + 1350 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1355 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1357 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1359 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1361 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1382 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1384 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1386 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1390 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1393 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1394 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1395 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1396 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1434 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1437 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1439 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1459 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1493 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1495 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1497 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1498 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1499 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1512 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1574 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1575 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:11 (Found 3 errors + 1576 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:12 (Found 3 errors + 1658 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:12 (Found 3 errors + 1663 warnings) Compiling jalview/src/jalview/io build 28-Nov-2025 17:47:12 (Found 3 errors + 1663 warnings) Compiling jalview/src/jalview/io/cache build 28-Nov-2025 17:47:12 (Found 3 errors + 1664 warnings) Compiling jalview/src/jalview/io/exceptions build 28-Nov-2025 17:47:12 (Found 3 errors + 1664 warnings) Compiling jalview/src/jalview/io/gff build 28-Nov-2025 17:47:12 (Found 3 errors + 1665 warnings) Compiling jalview/src/jalview/io/gff build 28-Nov-2025 17:47:12 (Found 3 errors + 1665 warnings) Compiling jalview/src/jalview/io/packed build 28-Nov-2025 17:47:12 (Found 3 errors + 1671 warnings) Compiling jalview/src/jalview/io/packed build 28-Nov-2025 17:47:12 (Found 3 errors + 1672 warnings) Compiling jalview/src/jalview/io/packed build 28-Nov-2025 17:47:12 (Found 3 errors + 1672 warnings) Compiling jalview/src/jalview/io/vamsas build 28-Nov-2025 17:47:12 (Found 3 errors + 1690 warnings) Compiling jalview/src/jalview/io/vamsas build 28-Nov-2025 17:47:12 (Found 3 errors + 1701 warnings) Compiling jalview/src/jalview/io/vamsas build 28-Nov-2025 17:47:12 (Found 3 errors + 1702 warnings) Compiling jalview/src/jalview/io/vamsas build 28-Nov-2025 17:47:12 (Found 3 errors + 1715 warnings) Compiling jalview/src/jalview/io/vamsas build 28-Nov-2025 17:47:12 (Found 3 errors + 1719 warnings) Compiling jalview/src/jalview/io/vamsas build 28-Nov-2025 17:47:12 (Found 3 errors + 1723 warnings) Compiling jalview/src/jalview/io/vamsas build 28-Nov-2025 17:47:12 (Found 3 errors + 1746 warnings) Compiling jalview/src/jalview/io/vamsas build 28-Nov-2025 17:47:12 (Found 3 errors + 1749 warnings) Compiling jalview/src/jalview/io/vcf build 28-Nov-2025 17:47:12 (Found 4 errors + 1758 warnings) Compiling jalview/src/jalview/javascript build 28-Nov-2025 17:47:12 (Found 4 errors + 1762 warnings) Compiling jalview/src/jalview/javascript build 28-Nov-2025 17:47:12 (Found 4 errors + 1763 warnings) Compiling jalview/src/jalview/javascript/json build 28-Nov-2025 17:47:12 (Found 4 errors + 1763 warnings) Compiling jalview/src/jalview/javascript/web build 28-Nov-2025 17:47:12 (Found 4 errors + 1764 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1765 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1766 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1769 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1770 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1771 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1772 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1773 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1776 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1778 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1786 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1787 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1788 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1793 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1795 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1797 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1798 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1801 warnings) Compiling jalview/src/jalview/jbgui build 28-Nov-2025 17:47:12 (Found 4 errors + 1801 warnings) Compiling jalview/src/jalview/json/binding/biojs build 28-Nov-2025 17:47:12 (Found 4 errors + 1801 warnings) Compiling jalview/src/jalview/json/binding/biojson/v1 build 28-Nov-2025 17:47:12 (Found 4 errors + 1804 warnings) Compiling jalview/src/jalview/log build 28-Nov-2025 17:47:12 (Found 4 errors + 1806 warnings) Compiling jalview/src/jalview/log build 28-Nov-2025 17:47:12 (Found 4 errors + 1807 warnings) Compiling jalview/src/jalview/log build 28-Nov-2025 17:47:12 (Found 4 errors + 1807 warnings) Compiling jalview/src/jalview/math build 28-Nov-2025 17:47:12 (Found 4 errors + 1808 warnings) Compiling jalview/src/jalview/math build 28-Nov-2025 17:47:12 (Found 4 errors + 1809 warnings) Compiling jalview/src/jalview/math build 28-Nov-2025 17:47:12 (Found 4 errors + 1836 warnings) Compiling jalview/src/jalview/project build 28-Nov-2025 17:47:12 (Found 4 errors + 1838 warnings) Compiling jalview/src/jalview/renderer build 28-Nov-2025 17:47:12 (Found 4 errors + 1839 warnings) Compiling jalview/src/jalview/renderer build 28-Nov-2025 17:47:12 (Found 4 errors + 1839 warnings) Compiling jalview/src/jalview/renderer/api build 28-Nov-2025 17:47:12 (Found 4 errors + 1839 warnings) Compiling jalview/src/jalview/renderer/seqfeatures build 28-Nov-2025 17:47:13 (Found 4 errors + 1839 warnings) Compiling jalview/src/jalview/rest build 28-Nov-2025 17:47:13 (Found 4 errors + 1839 warnings) Compiling jalview/src/jalview/schemes build 28-Nov-2025 17:47:13 (Found 4 errors + 1842 warnings) Compiling jalview/src/jalview/schemes build 28-Nov-2025 17:47:13 (Found 4 errors + 1842 warnings) Compiling jalview/src/jalview/structure build 28-Nov-2025 17:47:13 (Found 4 errors + 1843 warnings) Compiling jalview/src/jalview/structure build 28-Nov-2025 17:47:13 (Found 4 errors + 1844 warnings) Compiling jalview/src/jalview/structure build 28-Nov-2025 17:47:13 (Found 4 errors + 1849 warnings) Compiling jalview/src/jalview/structure build 28-Nov-2025 17:47:13 (Found 4 errors + 1850 warnings) Compiling jalview/src/jalview/structures/models build 28-Nov-2025 17:47:13 (Found 4 errors + 1850 warnings) Compiling jalview/src/jalview/urls build 28-Nov-2025 17:47:13 (Found 4 errors + 1851 warnings) Compiling jalview/src/jalview/urls build 28-Nov-2025 17:47:13 (Found 4 errors + 1851 warnings) Compiling jalview/src/jalview/urls/api build 28-Nov-2025 17:47:13 (Found 4 errors + 1851 warnings) Compiling jalview/src/jalview/urls/applet build 28-Nov-2025 17:47:13 (Found 4 errors + 1851 warnings) Compiling jalview/src/jalview/urls/desktop build 28-Nov-2025 17:47:13 (Found 4 errors + 1851 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1852 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1853 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1858 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1864 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1865 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1877 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1878 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1881 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1886 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1889 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1890 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1893 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1897 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1901 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1925 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1926 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1926 warnings) Compiling jalview/src/jalview/util/dialogrunner build 28-Nov-2025 17:47:13 (Found 4 errors + 1926 warnings) Compiling jalview/src/jalview/util/imagemaker build 28-Nov-2025 17:47:13 (Found 4 errors + 1926 warnings) Compiling jalview/src/jalview/util build 28-Nov-2025 17:47:13 (Found 4 errors + 1926 warnings) Compiling jalview/src/jalview/util/matcher build 28-Nov-2025 17:47:13 (Found 4 errors + 1926 warnings) Compiling jalview/src/jalview/viewmodel build 28-Nov-2025 17:47:13 (Found 4 errors + 1929 warnings) Compiling jalview/src/jalview/viewmodel build 28-Nov-2025 17:47:13 (Found 4 errors + 1929 warnings) Compiling jalview/src/jalview/viewmodel/annotationfilter build 28-Nov-2025 17:47:13 (Found 4 errors + 1930 warnings) Compiling jalview/src/jalview/viewmodel/seqfeatures build 28-Nov-2025 17:47:13 (Found 4 errors + 1930 warnings) Compiling jalview/src/jalview/viewmodel/styles build 28-Nov-2025 17:47:13 (Found 4 errors + 1930 warnings) Compiling jalview/src/jalview/workers build 28-Nov-2025 17:47:13 (Found 4 errors + 1932 warnings) Compiling jalview/src/jalview/workers build 28-Nov-2025 17:47:13 (Found 4 errors + 1936 warnings) Compiling jalview/src/jalview/workers build 28-Nov-2025 17:47:13 (Found 4 errors + 1936 warnings) Compiling jalview/src/jalview/ws build 28-Nov-2025 17:47:13 (Found 4 errors + 1938 warnings) Compiling jalview/src/jalview/ws build 28-Nov-2025 17:47:13 (Found 4 errors + 1942 warnings) Compiling jalview/src/jalview/ws build 28-Nov-2025 17:47:13 (Found 4 errors + 1942 warnings) Compiling jalview/src/jalview/ws/datamodel build 28-Nov-2025 17:47:13 (Found 4 errors + 1945 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold build 28-Nov-2025 17:47:13 (Found 4 errors + 1950 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold build 28-Nov-2025 17:47:13 (Found 4 errors + 1954 warnings) Compiling jalview/src/jalview/ws/dbsources build 28-Nov-2025 17:47:13 (Found 4 errors + 1955 warnings) Compiling jalview/src/jalview/ws/dbsources build 28-Nov-2025 17:47:13 (Found 4 errors + 1955 warnings) Compiling jalview/src/jalview/ws/ebi build 28-Nov-2025 17:47:13 (Found 4 errors + 1955 warnings) Compiling jalview/src/jalview/ws/io/mime build 28-Nov-2025 17:47:13 (Found 4 errors + 1955 warnings) Compiling jalview/src/jalview/ws/jws1 build 28-Nov-2025 17:47:13 (Found 4 errors + 1959 warnings) Compiling jalview/src/jalview/ws/jws1 build 28-Nov-2025 17:47:13 (Found 4 errors + 1967 warnings) Compiling jalview/src/jalview/ws/jws1 build 28-Nov-2025 17:47:13 (Found 4 errors + 1980 warnings) Compiling jalview/src/jalview/ws/jws1 build 28-Nov-2025 17:47:13 (Found 4 errors + 1994 warnings) Compiling jalview/src/jalview/ws/jws1 build 28-Nov-2025 17:47:13 (Found 4 errors + 2000 warnings) Compiling jalview/src/jalview/ws/jws1 build 28-Nov-2025 17:47:13 (Found 4 errors + 2001 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2002 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2012 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2019 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2033 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2036 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2040 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2046 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2052 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2064 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2066 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2070 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2096 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:13 (Found 4 errors + 2119 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:15 (Found 4 errors + 2120 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:15 (Found 4 errors + 2125 warnings) Compiling jalview/src/jalview/ws/jws2 build 28-Nov-2025 17:47:15 (Found 4 errors + 2131 warnings) Compiling jalview/src/jalview/ws/jws2/dm build 28-Nov-2025 17:47:15 (Found 4 errors + 2135 warnings) Compiling jalview/src/jalview/ws/jws2/dm build 28-Nov-2025 17:47:15 (Found 4 errors + 2138 warnings) Compiling jalview/src/jalview/ws/jws2/dm build 28-Nov-2025 17:47:15 (Found 4 errors + 2149 warnings) Compiling jalview/src/jalview/ws/jws2/dm build 28-Nov-2025 17:47:15 (Found 4 errors + 2156 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2 build 28-Nov-2025 17:47:15 (Found 4 errors + 2156 warnings) Compiling jalview/src/jalview/ws/params build 28-Nov-2025 17:47:15 (Found 4 errors + 2157 warnings) Compiling jalview/src/jalview/ws/params build 28-Nov-2025 17:47:15 (Found 4 errors + 2157 warnings) Compiling jalview/src/jalview/ws/params/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2158 warnings) Compiling jalview/src/jalview/ws/params/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2158 warnings) Compiling jalview/src/jalview/ws/rest build 28-Nov-2025 17:47:15 (Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/ws/rest build 28-Nov-2025 17:47:15 (Found 4 errors + 2164 warnings) Compiling jalview/src/jalview/ws/rest build 28-Nov-2025 17:47:15 (Found 4 errors + 2165 warnings) Compiling jalview/src/jalview/ws/rest build 28-Nov-2025 17:47:15 (Found 4 errors + 2166 warnings) Compiling jalview/src/jalview/ws/rest build 28-Nov-2025 17:47:15 (Found 4 errors + 2172 warnings) Compiling jalview/src/jalview/ws/rest build 28-Nov-2025 17:47:15 (Found 4 errors + 2181 warnings) Compiling jalview/src/jalview/ws/rest build 28-Nov-2025 17:47:15 (Found 4 errors + 2187 warnings) Compiling jalview/src/jalview/ws/rest build 28-Nov-2025 17:47:15 (Found 4 errors + 2187 warnings) Compiling jalview/src/jalview/ws/rest/params build 28-Nov-2025 17:47:15 (Found 4 errors + 2190 warnings) Compiling jalview/src/jalview/ws/seqfetcher build 28-Nov-2025 17:47:15 (Found 4 errors + 2190 warnings) Compiling jalview/src/jalview/ws/sifts build 28-Nov-2025 17:47:15 (Found 4 errors + 2192 warnings) Compiling jalview/src/jalview/ws/sifts build 28-Nov-2025 17:47:15 (Found 4 errors + 2195 warnings) Compiling jalview/src/jalview/ws/uimodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2195 warnings) Compiling jalview/src/jalview/ws/utils build 28-Nov-2025 17:47:15 (Found 4 errors + 2195 warnings) Compiling jalview/src/jalview/xml/binding/embl build 28-Nov-2025 17:47:15 (Found 4 errors + 2195 warnings) Compiling jalview/src/jalview/xml/binding/jalview build 28-Nov-2025 17:47:15 (Found 4 errors + 2195 warnings) Compiling jalview/src/jalview/xml/binding/sifts build 28-Nov-2025 17:47:15 (Found 4 errors + 2195 warnings) Compiling jalview/src/jalview/xml/binding/uniprot build 28-Nov-2025 17:47:15 (Found 4 errors + 2202 warnings) Compiling jalview/src/mc_view build 28-Nov-2025 17:47:15 (Found 4 errors + 2203 warnings) Compiling jalview/src/mc_view build 28-Nov-2025 17:47:15 (Found 4 errors + 2208 warnings) Compiling jalview/src/mc_view build 28-Nov-2025 17:47:15 (Found 4 errors + 2215 warnings) Compiling jalview/src/mc_view build 28-Nov-2025 17:47:15 (Found 4 errors + 2218 warnings) Compiling jalview/src/mc_view build 28-Nov-2025 17:47:15 (Found 4 errors + 2219 warnings) Compiling jalview/src/mc_view build 28-Nov-2025 17:47:15 (Found 4 errors + 2219 warnings) Compiling jalview/src/net/meyfa/sha256 build 28-Nov-2025 17:47:15 (Found 4 errors + 2219 warnings) Compiling jalview/src/org/jibble/epsgraphics build 28-Nov-2025 17:47:15 (Found 4 errors + 2220 warnings) Compiling jalview/src/org/jibble/epsgraphics build 28-Nov-2025 17:47:15 (Found 4 errors + 2226 warnings) Compiling jalview/src/org/jibble/epsgraphics build 28-Nov-2025 17:47:15 (Found 4 errors + 2226 warnings) Compiling jalview/src/org/json build 28-Nov-2025 17:47:15 (Found 4 errors + 2228 warnings) Compiling jalview/src/org/json build 28-Nov-2025 17:47:15 (Found 4 errors + 2229 warnings) Compiling jalview/src/org/json build 28-Nov-2025 17:47:15 (Found 4 errors + 2240 warnings) Compiling jalview/src/org/json/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2246 warnings) Compiling jalview/src/org/json/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2255 warnings) Compiling jalview/src/org/json/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2257 warnings) Compiling jalview/src/org/json/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2259 warnings) Compiling jalview/src/org/json/simple/parser build 28-Nov-2025 17:47:15 (Found 4 errors + 2334 warnings) Compiling jalview/src/org/json/simple/parser build 28-Nov-2025 17:47:15 (Found 4 errors + 2338 warnings) Compiling jalview/src/org/json/simple/parser build 28-Nov-2025 17:47:15 (Found 4 errors + 2338 warnings) Compiling jalview/src/org/stackoverflowusers/file build 28-Nov-2025 17:47:15 (Found 4 errors + 2338 warnings) Compiling jalview/src/swingjs/api build 28-Nov-2025 17:47:15 (Found 4 errors + 2338 warnings) Compiling jalview/src/swingjs/api/js build 28-Nov-2025 17:47:15 (Found 4 errors + 2339 warnings) Compiling jalview/src/uk/ac/ebi/picr/model build 28-Nov-2025 17:47:15 (Found 4 errors + 2341 warnings) Compiling jalview/src/uk/ac/ebi/picr/model build 28-Nov-2025 17:47:15 (Found 4 errors + 2342 warnings) Compiling jalview/src/uk/ac/ebi/picr/model build 28-Nov-2025 17:47:15 (Found 4 errors + 2344 warnings) Compiling jalview/src/uk/ac/ebi/picr/model build 28-Nov-2025 17:47:15 (Found 4 errors + 2347 warnings) Compiling jalview/src/uk/ac/ebi/www build 28-Nov-2025 17:47:15 (Found 4 errors + 2350 warnings) Compiling jalview/src/uk/ac/ebi/www build 28-Nov-2025 17:47:15 (Found 4 errors + 2353 warnings) Compiling jalview/src/uk/ac/ebi/www build 28-Nov-2025 17:47:15 (Found 4 errors + 2360 warnings) Compiling jalview/src/uk/ac/ebi/www build 28-Nov-2025 17:47:15 (Found 4 errors + 2408 warnings) Compiling jalview/src/uk/ac/ebi/www build 28-Nov-2025 17:47:15 (Found 4 errors + 2450 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService build 28-Nov-2025 17:47:15 (Found 4 errors + 2457 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService build 28-Nov-2025 17:47:15 (Found 4 errors + 2457 warnings) Compiling jalview/src/vamsas build 28-Nov-2025 17:47:15 (Found 4 errors + 2458 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2460 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2461 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2463 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2464 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2466 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2467 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2469 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2470 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2472 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2473 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2475 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2476 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2478 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2479 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2481 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2482 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2483 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2485 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2487 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2488 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2490 warnings) Compiling jalview/src/vamsas/objects/simple build 28-Nov-2025 17:47:15 (Found 4 errors + 2490 warnings) Cleaning output folder for jalview build 28-Nov-2025 17:47:15 (Found 4 errors + 2490 warnings) Copying resources to the output folder build 28-Nov-2025 17:47:15 (Found 4 errors + 2490 warnings) Analyzing sources build 28-Nov-2025 17:47:15 J2S buildStarting 293 files, contexts.size() = 2, isBatch=true build 28-Nov-2025 17:47:15 (Found 4 errors + 2490 warnings) Compiling jalview/test/jalview/analysis build 28-Nov-2025 17:47:15 (Found 4 errors + 2498 warnings) Compiling jalview/test/jalview/analysis build 28-Nov-2025 17:47:15 (Found 4 errors + 2500 warnings) Compiling jalview/test/jalview/analysis build 28-Nov-2025 17:47:15 (Found 4 errors + 2513 warnings) Compiling jalview/test/jalview/analysis build 28-Nov-2025 17:47:15 (Found 4 errors + 2526 warnings) Compiling jalview/test/jalview/analysis build 28-Nov-2025 17:47:15 (Found 4 errors + 2527 warnings) Compiling jalview/test/jalview/analysis build 28-Nov-2025 17:47:15 (Found 4 errors + 2529 warnings) Compiling jalview/test/jalview/analysis build 28-Nov-2025 17:47:15 (Found 4 errors + 2570 warnings) Compiling jalview/test/jalview/analysis build 28-Nov-2025 17:47:15 (Found 4 errors + 2570 warnings) Compiling jalview/test/jalview/analysis/scoremodels build 28-Nov-2025 17:47:15 (Found 4 errors + 2575 warnings) Compiling jalview/test/jalview/analysis/scoremodels build 28-Nov-2025 17:47:15 (Found 4 errors + 2576 warnings) Compiling jalview/test/jalview/analysis/scoremodels build 28-Nov-2025 17:47:15 (Found 4 errors + 2582 warnings) Compiling jalview/test/jalview/analysis/scoremodels build 28-Nov-2025 17:47:15 (Found 4 errors + 2583 warnings) Compiling jalview/test/jalview/bin build 28-Nov-2025 17:47:15 (Found 4 errors + 2584 warnings) Compiling jalview/test/jalview/bin build 28-Nov-2025 17:47:15 (Found 4 errors + 2585 warnings) Compiling jalview/test/jalview/bin build 28-Nov-2025 17:47:15 (Found 4 errors + 2588 warnings) Compiling jalview/test/jalview/bin/argparser build 28-Nov-2025 17:47:15 (Found 4 errors + 2595 warnings) Compiling jalview/test/jalview/commands build 28-Nov-2025 17:47:15 (Found 4 errors + 2596 warnings) Compiling jalview/test/jalview/controller build 28-Nov-2025 17:47:15 (Found 4 errors + 2596 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2597 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2610 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2611 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2613 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2622 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2623 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2625 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2627 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2629 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2630 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2631 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:15 (Found 4 errors + 2634 warnings) Compiling jalview/test/jalview/datamodel build 28-Nov-2025 17:47:16 (Found 4 errors + 2635 warnings) Compiling jalview/test/jalview/datamodel/features build 28-Nov-2025 17:47:16 (Found 4 errors + 2636 warnings) Compiling jalview/test/jalview/datamodel/features build 28-Nov-2025 17:47:16 (Found 4 errors + 2636 warnings) Compiling jalview/test/jalview/ext/android build 28-Nov-2025 17:47:16 (Found 4 errors + 2636 warnings) Compiling jalview/test/jalview/ext/ensembl build 28-Nov-2025 17:47:16 (Found 4 errors + 2636 warnings) Compiling jalview/test/jalview/ext/htsjdk build 28-Nov-2025 17:47:16 (Found 4 errors + 2637 warnings) Compiling jalview/test/jalview/ext/jmol build 28-Nov-2025 17:47:16 (Found 4 errors + 2638 warnings) Compiling jalview/test/jalview/ext/jmol build 28-Nov-2025 17:47:16 (Found 4 errors + 2638 warnings) Compiling jalview/test/jalview/ext/paradise build 28-Nov-2025 17:47:16 (Found 4 errors + 2638 warnings) Compiling jalview/test/jalview/ext/pymol build 28-Nov-2025 17:47:16 (Found 4 errors + 2638 warnings) Compiling jalview/test/jalview/ext/rbvi/chimera build 28-Nov-2025 17:47:16 (Found 4 errors + 2638 warnings) Compiling jalview/test/jalview/ext/so build 28-Nov-2025 17:47:16 (Found 4 errors + 2638 warnings) Compiling jalview/test/jalview/fts/core build 28-Nov-2025 17:47:16 (Found 4 errors + 2639 warnings) Compiling jalview/test/jalview/fts/service/pdb build 28-Nov-2025 17:47:16 (Found 4 errors + 2640 warnings) Compiling jalview/test/jalview/fts/service/pdb build 28-Nov-2025 17:47:16 (Found 4 errors + 2647 warnings) Compiling jalview/test/jalview/fts/threedbeacons build 28-Nov-2025 17:47:16 (Found 4 errors + 2652 warnings) Compiling jalview/test/jalview/fts/threedbeacons build 28-Nov-2025 17:47:16 (Found 4 errors + 2652 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2653 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2655 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2656 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2676 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2701 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2702 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2705 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2706 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2708 warnings) Compiling jalview/test/jalview/gui build 28-Nov-2025 17:47:16 (Found 4 errors + 2714 warnings) Compiling jalview/test/jalview/gui/structurechooser build 28-Nov-2025 17:47:16 (Found 4 errors + 2715 warnings) Compiling jalview/test/jalview/io build 28-Nov-2025 17:47:16 (Found 4 errors + 2719 warnings) Compiling jalview/test/jalview/io build 28-Nov-2025 17:47:16 (Found 4 errors + 2723 warnings) Compiling jalview/test/jalview/io build 28-Nov-2025 17:47:16 (Found 4 errors + 2727 warnings) Compiling jalview/test/jalview/io build 28-Nov-2025 17:47:16 (Found 4 errors + 2729 warnings) Compiling jalview/test/jalview/io build 28-Nov-2025 17:47:16 (Found 4 errors + 2730 warnings) Compiling jalview/test/jalview/io build 28-Nov-2025 17:47:16 (Found 4 errors + 2736 warnings) Compiling jalview/test/jalview/io build 28-Nov-2025 17:47:16 (Found 4 errors + 2738 warnings) Compiling jalview/test/jalview/io build 28-Nov-2025 17:47:16 (Found 4 errors + 2738 warnings) Compiling jalview/test/jalview/io/cache build 28-Nov-2025 17:47:16 (Found 4 errors + 2738 warnings) Compiling jalview/test/jalview/io/gff build 28-Nov-2025 17:47:16 (Found 4 errors + 2739 warnings) Compiling jalview/test/jalview/io/gff build 28-Nov-2025 17:47:16 (Found 4 errors + 2748 warnings) Compiling jalview/test/jalview/io/vcf build 28-Nov-2025 17:47:16 (Found 4 errors + 2748 warnings) Compiling jalview/test/jalview/math build 28-Nov-2025 17:47:16 (Found 4 errors + 2764 warnings) Compiling jalview/test/jalview/project build 28-Nov-2025 17:47:16 (Found 4 errors + 2765 warnings) Compiling jalview/test/jalview/renderer build 28-Nov-2025 17:47:16 (Found 4 errors + 2772 warnings) Compiling jalview/test/jalview/renderer build 28-Nov-2025 17:47:16 (Found 4 errors + 2772 warnings) Compiling jalview/test/jalview/renderer/seqfeatures build 28-Nov-2025 17:47:16 (Found 4 errors + 2772 warnings) Compiling jalview/test/jalview/schemes build 28-Nov-2025 17:47:17 (Found 4 errors + 2772 warnings) Compiling jalview/test/jalview/structure build 28-Nov-2025 17:47:17 (Found 4 errors + 2774 warnings) Compiling jalview/test/jalview/structure build 28-Nov-2025 17:47:17 (Found 4 errors + 2775 warnings) Compiling jalview/test/jalview/structure build 28-Nov-2025 17:47:17 (Found 4 errors + 2776 warnings) Compiling jalview/test/jalview/structure build 28-Nov-2025 17:47:17 (Found 4 errors + 2779 warnings) Compiling jalview/test/jalview/structure build 28-Nov-2025 17:47:17 (Found 4 errors + 2779 warnings) Compiling jalview/test/jalview/structures/models build 28-Nov-2025 17:47:17 (Found 4 errors + 2780 warnings) Compiling jalview/test/jalview/urls build 28-Nov-2025 17:47:17 (Found 4 errors + 2785 warnings) Compiling jalview/test/jalview/urls build 28-Nov-2025 17:47:17 (Found 4 errors + 2790 warnings) Compiling jalview/test/jalview/urls build 28-Nov-2025 17:47:17 (Found 4 errors + 2790 warnings) Compiling jalview/test/jalview/util build 28-Nov-2025 17:47:17 (Found 4 errors + 2797 warnings) Compiling jalview/test/jalview/util build 28-Nov-2025 17:47:17 (Found 4 errors + 2798 warnings) Compiling jalview/test/jalview/util build 28-Nov-2025 17:47:17 (Found 4 errors + 2802 warnings) Compiling jalview/test/jalview/util build 28-Nov-2025 17:47:17 (Found 4 errors + 2803 warnings) Compiling jalview/test/jalview/util build 28-Nov-2025 17:47:17 (Found 4 errors + 2808 warnings) Compiling jalview/test/jalview/util build 28-Nov-2025 17:47:17 (Found 4 errors + 2808 warnings) Compiling jalview/test/jalview/util/dialogrunner build 28-Nov-2025 17:47:17 (Found 4 errors + 2808 warnings) Compiling jalview/test/jalview/util/imagemaker build 28-Nov-2025 17:47:17 (Found 4 errors + 2808 warnings) Compiling jalview/test/jalview/util/matcher build 28-Nov-2025 17:47:17 (Found 4 errors + 2811 warnings) Compiling jalview/test/jalview/util/matcher build 28-Nov-2025 17:47:17 (Found 4 errors + 2811 warnings) Compiling jalview/test/jalview/viewmodel build 28-Nov-2025 17:47:17 (Found 4 errors + 2813 warnings) Compiling jalview/test/jalview/viewmodel/styles build 28-Nov-2025 17:47:17 (Found 4 errors + 2813 warnings) Compiling jalview/test/jalview/workers build 28-Nov-2025 17:47:17 (Found 4 errors + 2813 warnings) Compiling jalview/test/jalview/ws build 28-Nov-2025 17:47:17 (Found 4 errors + 2815 warnings) Compiling jalview/test/jalview/ws build 28-Nov-2025 17:47:17 (Found 4 errors + 2818 warnings) Compiling jalview/test/jalview/ws/dbsources build 28-Nov-2025 17:47:17 (Found 4 errors + 2819 warnings) Compiling jalview/test/jalview/ws/dbsources build 28-Nov-2025 17:47:17 (Found 4 errors + 2819 warnings) Compiling jalview/test/jalview/ws/ebi build 28-Nov-2025 17:47:17 (Found 4 errors + 2826 warnings) Compiling jalview/test/jalview/ws/gui build 28-Nov-2025 17:47:17 (Found 4 errors + 2826 warnings) Compiling jalview/test/jalview/ws/jabaws build 28-Nov-2025 17:47:17 (Found 4 errors + 2827 warnings) Compiling jalview/test/jalview/ws/jabaws build 28-Nov-2025 17:47:17 (Found 4 errors + 2828 warnings) Compiling jalview/test/jalview/ws/jabaws build 28-Nov-2025 17:47:17 (Found 4 errors + 2832 warnings) Compiling jalview/test/jalview/ws/jabaws build 28-Nov-2025 17:47:17 (Found 4 errors + 2847 warnings) Compiling jalview/test/jalview/ws/jws2 build 28-Nov-2025 17:47:17 (Found 4 errors + 2847 warnings) Compiling jalview/test/jalview/ws/rest build 28-Nov-2025 17:47:17 (Found 4 errors + 2848 warnings) Compiling jalview/test/jalview/ws/rest build 28-Nov-2025 17:47:17 (Found 4 errors + 2848 warnings) Compiling jalview/test/jalview/ws/seqfetcher build 28-Nov-2025 17:47:17 (Found 4 errors + 2849 warnings) Compiling jalview/test/jalview/ws/sifts build 28-Nov-2025 17:47:17 (Found 4 errors + 2851 warnings) Compiling jalview/test/jalview/ws/utils build 28-Nov-2025 17:47:17 (Found 4 errors + 2867 warnings) Compiling jalview/test/junit/extensions build 28-Nov-2025 17:47:17 (Found 4 errors + 2869 warnings) Compiling jalview/test/junit/extensions build 28-Nov-2025 17:47:17 (Found 4 errors + 2869 warnings) Compiling jalview/test/mc_view build 28-Nov-2025 17:47:17 (Found 4 errors + 2870 warnings) Compiling jalview/test/mc_view build 28-Nov-2025 17:47:17 J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.j2s build 28-Nov-2025 17:47:17 j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename build 28-Nov-2025 17:47:17 J2S System.getProperty("org.jalview.jalviewjsj2sfilename") = ./build/jalviewjs/config/j2s build 28-Nov-2025 17:47:17 J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/config/j2s build 28-Nov-2025 17:47:17 j2s.compiler.status = enable build 28-Nov-2025 17:47:17 j2s.compiler.java.version = 8 build 28-Nov-2025 17:47:17 J2S compiler version set to 8 build 28-Nov-2025 17:47:17 j2s.break.on.error = false build 28-Nov-2025 17:47:17 j2s.exact.long = true build 28-Nov-2025 17:47:17 j2s.async.thread = false build 28-Nov-2025 17:47:17 j2s.compiler.mode = nodebug build 28-Nov-2025 17:47:17 j2s.site.directory = ./build/jalviewjs/tmp/site_js build 28-Nov-2025 17:47:17 J2S writing to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s build 28-Nov-2025 17:47:17 j2s.log.methods.declared = build 28-Nov-2025 17:47:17 j2s.log.methods.called = build 28-Nov-2025 17:47:17 j2s.excluded.paths = test;testng;util build 28-Nov-2025 17:47:17 j2s.compiler.read.annotations = true build 28-Nov-2025 17:47:17 j2s.compiler.ignored.annotations = CallerSensitive;ConstructorProperties;Deprecated;Override;SafeVarargs;SuppressWarnings;FunctionalInterface;Documented;Inherited;Native;Repeatable;Retention; build 28-Nov-2025 17:47:17 j2s.testing = false build 28-Nov-2025 17:47:17 j2s.compiler.nonqualified.packages = build 28-Nov-2025 17:47:17 j2s.compiler.nonqualified.classes = build 28-Nov-2025 17:47:17 j2s.class.replacements = build 28-Nov-2025 17:47:17 j2s.template.html = utils/jalviewjs/template.html build 28-Nov-2025 17:47:17 J2S using HTML template /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/utils/jalviewjs/template.html build 28-Nov-2025 17:47:17 J2S building JavaScript jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Fri Nov 28 17:47:17 GMT 2025 build 28-Nov-2025 17:47:17 J2S building JavaScript for 1108 files build 28-Nov-2025 17:47:17 J2S transpiling (1/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/github/reinert/jjschema/Attributes.java build 28-Nov-2025 17:47:18 j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/com build 28-Nov-2025 17:47:18 J2S transpiling (2/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/AmpersandRule.java build 28-Nov-2025 17:47:18 J2S transpiling (3/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Any.java build 28-Nov-2025 17:47:18 J2S transpiling (4/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/BackG.java build 28-Nov-2025 17:47:18 J2S transpiling (5/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/BackMatch.java build 28-Nov-2025 17:47:18 J2S transpiling (6/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/BackRefRule.java build 28-Nov-2025 17:47:18 J2S transpiling (7/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Backup.java build 28-Nov-2025 17:47:18 J2S transpiling (8/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/BasicStringBufferLike.java build 28-Nov-2025 17:47:18 J2S transpiling (9/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Bits.java build 28-Nov-2025 17:47:18 J2S transpiling (10/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Boundary.java build 28-Nov-2025 17:47:18 J2S transpiling (11/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Bracket.java build 28-Nov-2025 17:47:18 J2S transpiling (12/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/CaseMgr.java build 28-Nov-2025 17:47:18 J2S transpiling (13/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/ChangeRule.java build 28-Nov-2025 17:47:18 J2S transpiling (14/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/CodeRule.java build 28-Nov-2025 17:47:18 J2S transpiling (15/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Ctrl.java build 28-Nov-2025 17:47:18 J2S transpiling (16/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Custom.java build 28-Nov-2025 17:47:18 J2S transpiling (17/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/CustomEndpoint.java build 28-Nov-2025 17:47:18 J2S transpiling (18/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/DirFileRegex.java build 28-Nov-2025 17:47:18 J2S transpiling (19/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/DotMulti.java build 28-Nov-2025 17:47:18 J2S transpiling (20/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/End.java build 28-Nov-2025 17:47:18 J2S transpiling (21/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/FastBracket.java build 28-Nov-2025 17:47:18 J2S transpiling (22/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/FastMulti.java build 28-Nov-2025 17:47:18 J2S transpiling (23/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/FileRegex.java build 28-Nov-2025 17:47:18 J2S transpiling (24/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Group.java build 28-Nov-2025 17:47:18 J2S transpiling (25/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/LeftRule.java build 28-Nov-2025 17:47:19 J2S transpiling (26/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Multi.java build 28-Nov-2025 17:47:19 J2S transpiling (27/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/MultiMin.java build 28-Nov-2025 17:47:19 J2S transpiling (28/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Multi_stage2.java build 28-Nov-2025 17:47:19 J2S transpiling (29/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NoPattern.java build 28-Nov-2025 17:47:19 J2S transpiling (30/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NonDirFileRegex.java build 28-Nov-2025 17:47:19 J2S transpiling (31/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NotImplementedError.java build 28-Nov-2025 17:47:19 J2S transpiling (32/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NullPattern.java build 28-Nov-2025 17:47:19 J2S transpiling (33/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NullRule.java build 28-Nov-2025 17:47:19 J2S transpiling (34/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Or.java build 28-Nov-2025 17:47:19 J2S transpiling (35/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/OrMark.java build 28-Nov-2025 17:47:19 J2S transpiling (36/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/PartialBuffer.java build 28-Nov-2025 17:47:19 J2S transpiling (37/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Pattern.java build 28-Nov-2025 17:47:19 J2S transpiling (38/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/PatternSub.java build 28-Nov-2025 17:47:19 J2S transpiling (39/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/PopRule.java build 28-Nov-2025 17:47:19 J2S transpiling (40/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Prop.java build 28-Nov-2025 17:47:20 J2S transpiling (41/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Pthings.java build 28-Nov-2025 17:47:20 J2S transpiling (42/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/PushRule.java build 28-Nov-2025 17:47:20 J2S transpiling (43/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RBuffer.java build 28-Nov-2025 17:47:20 J2S transpiling (44/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Range.java build 28-Nov-2025 17:47:20 J2S transpiling (45/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegOpt.java build 28-Nov-2025 17:47:20 J2S transpiling (46/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegRes.java build 28-Nov-2025 17:47:20 J2S transpiling (47/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegSyntax.java build 28-Nov-2025 17:47:20 J2S transpiling (48/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegSyntaxError.java build 28-Nov-2025 17:47:20 J2S transpiling (49/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Regex.java build 28-Nov-2025 17:47:20 J2S transpiling (50/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegexReader.java build 28-Nov-2025 17:47:20 J2S transpiling (51/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegexTokenizer.java build 28-Nov-2025 17:47:20 J2S transpiling (52/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegexWriter.java build 28-Nov-2025 17:47:20 >>>main found for com.stevesoft.pat.RegexWriter build 28-Nov-2025 17:47:20 J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/com_stevesoft_pat_RegexWriter.html build 28-Nov-2025 17:47:20 J2S transpiling (53/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/ReplaceRule.java build 28-Nov-2025 17:47:20 J2S transpiling (54/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Replacer.java build 28-Nov-2025 17:47:20 J2S transpiling (55/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RightRule.java build 28-Nov-2025 17:47:20 J2S transpiling (56/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Rthings.java build 28-Nov-2025 17:47:20 J2S transpiling (57/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RuleHolder.java build 28-Nov-2025 17:47:20 J2S transpiling (58/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Skip.java build 28-Nov-2025 17:47:20 J2S transpiling (59/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Skip2.java build 28-Nov-2025 17:47:20 J2S transpiling (60/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/SkipBMH.java build 28-Nov-2025 17:47:20 J2S transpiling (61/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Skipped.java build 28-Nov-2025 17:47:20 J2S transpiling (62/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/SpecialRule.java build 28-Nov-2025 17:47:20 J2S transpiling (63/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Start.java build 28-Nov-2025 17:47:20 J2S transpiling (64/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/StrPos.java build 28-Nov-2025 17:47:20 J2S transpiling (65/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/StringBufferLike.java build 28-Nov-2025 17:47:20 J2S transpiling (66/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/StringLike.java build 28-Nov-2025 17:47:20 J2S transpiling (67/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/StringRule.java build 28-Nov-2025 17:47:20 J2S transpiling (68/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/SubMark.java build 28-Nov-2025 17:47:20 J2S transpiling (69/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/TransPat.java build 28-Nov-2025 17:47:20 J2S transpiling (70/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Transformer.java build 28-Nov-2025 17:47:20 J2S transpiling (71/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/UniValidator.java build 28-Nov-2025 17:47:20 J2S transpiling (72/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Validator.java build 28-Nov-2025 17:47:20 J2S transpiling (73/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/WantMoreTextReplaceRule.java build 28-Nov-2025 17:47:20 J2S transpiling (74/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/lookAhead.java build 28-Nov-2025 17:47:20 J2S transpiling (75/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/oneChar.java build 28-Nov-2025 17:47:20 J2S transpiling (76/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/parsePerl.java build 28-Nov-2025 17:47:20 J2S transpiling (77/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/patInf.java build 28-Nov-2025 17:47:20 J2S transpiling (78/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/patInt.java build 28-Nov-2025 17:47:20 J2S transpiling (79/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/wrap/CharArrayBufferWrap.java build 28-Nov-2025 17:47:20 J2S transpiling (80/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/wrap/CharArrayWrap.java build 28-Nov-2025 17:47:20 J2S transpiling (81/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/wrap/RandomAccessFileWrap.java build 28-Nov-2025 17:47:20 J2S transpiling (82/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/wrap/StringBufferWrap.java build 28-Nov-2025 17:47:20 J2S transpiling (83/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/wrap/StringWrap.java build 28-Nov-2025 17:47:20 J2S transpiling (84/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/wrap/WriterWrap.java build 28-Nov-2025 17:47:20 J2S transpiling (85/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/darrylbu/util/SwingUtils.java build 28-Nov-2025 17:47:20 j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/darrylbu to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/darrylbu build 28-Nov-2025 17:47:20 J2S transpiling (86/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimUtils.java build 28-Nov-2025 17:47:21 j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/ext build 28-Nov-2025 17:47:21 J2S transpiling (87/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraChain.java build 28-Nov-2025 17:47:21 J2S transpiling (88/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java build 28-Nov-2025 17:47:21 J2S transpiling (89/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraModel.java build 28-Nov-2025 17:47:21 J2S transpiling (90/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraResidue.java build 28-Nov-2025 17:47:21 J2S transpiling (91/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraStructuralObject.java build 28-Nov-2025 17:47:21 J2S transpiling (92/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraTreeModel.java build 28-Nov-2025 17:47:21 J2S transpiling (93/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/StructureManager.java build 28-Nov-2025 17:47:21 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/JpredService.java build 28-Nov-2025 17:47:21 J2S transpiling (101/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/JpredServiceLocator.java build 28-Nov-2025 17:47:21 J2S transpiling (102/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/JpredSoapBindingStub.java build 28-Nov-2025 17:47:21 J2S transpiling (103/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/MuscleWS.java build 28-Nov-2025 17:47:21 J2S transpiling (104/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/MuscleWSService.java build 28-Nov-2025 17:47:21 J2S transpiling (105/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/MuscleWSServiceLocator.java build 28-Nov-2025 17:47:21 J2S transpiling (106/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/MuscleWSSoapBindingStub.java build 28-Nov-2025 17:47:21 J2S transpiling (107/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/RegistryServiceSoapBindingStub.java build 28-Nov-2025 17:47:21 J2S transpiling (108/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/SeqSearchI.java build 28-Nov-2025 17:47:21 J2S transpiling (109/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/SeqSearchServiceLocator.java build 28-Nov-2025 17:47:21 J2S transpiling (110/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/SeqSearchServiceService.java build 28-Nov-2025 17:47:21 J2S transpiling (111/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java build 28-Nov-2025 17:47:21 J2S transpiling (112/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/ServiceHandle.java build 28-Nov-2025 17:47:21 J2S transpiling (113/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/ext/vamsas/ServiceHandles.java build 28-Nov-2025 17:47:21 J2S transpiling (114/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/analysis/AAFrequency.java build 28-Nov-2025 17:47:22 j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/jalview build 28-Nov-2025 17:47:22 J2S transpiling (115/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/analysis/AlignSeq.java build 28-Nov-2025 17:47:22 J2S transpiling (116/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/analysis/AlignmentAnnotationUtils.java build 28-Nov-2025 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transpiling (165/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/AlignmentViewPanel.java build 28-Nov-2025 17:47:24 J2S transpiling (166/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/BuildDetailsI.java build 28-Nov-2025 17:47:24 J2S transpiling (167/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/ComplexAlignFile.java build 28-Nov-2025 17:47:24 J2S transpiling (168/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/DBRefEntryI.java build 28-Nov-2025 17:47:24 J2S transpiling (169/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/FeatureColourI.java build 28-Nov-2025 17:47:24 J2S transpiling (170/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/FeatureRenderer.java build 28-Nov-2025 17:47:24 J2S transpiling (171/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/FeatureSettingsControllerI.java build 28-Nov-2025 17:47:24 J2S transpiling (172/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/FeatureSettingsModelI.java build 28-Nov-2025 17:47:24 J2S transpiling (173/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/FeaturesDisplayedI.java build 28-Nov-2025 17:47:24 J2S transpiling (174/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/FeaturesSourceI.java build 28-Nov-2025 17:47:24 J2S transpiling (175/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/FinderI.java build 28-Nov-2025 17:47:24 J2S transpiling (176/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/OOMHandlerI.java build 28-Nov-2025 17:47:24 J2S transpiling (177/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/RendererListenerI.java build 28-Nov-2025 17:47:24 J2S transpiling (178/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/RotatableCanvasI.java build 28-Nov-2025 17:47:24 J2S transpiling (179/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/SequenceRenderer.java build 28-Nov-2025 17:47:24 J2S transpiling (180/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/SequenceStructureBinding.java build 28-Nov-2025 17:47:24 J2S transpiling (181/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/SiftsClientI.java build 28-Nov-2025 17:47:24 J2S transpiling (182/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/SplitContainerI.java build 28-Nov-2025 17:47:24 J2S transpiling (183/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/StructureSelectionManagerProvider.java build 28-Nov-2025 17:47:24 J2S transpiling (184/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/ViewStyleI.java build 28-Nov-2025 17:47:24 J2S transpiling (185/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/analysis/PairwiseScoreModelI.java build 28-Nov-2025 17:47:24 J2S transpiling (186/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/analysis/ScoreModelI.java build 28-Nov-2025 17:47:24 J2S transpiling (187/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/analysis/SimilarityParamsI.java build 28-Nov-2025 17:47:24 J2S transpiling (188/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/structures/JalviewStructureDisplayI.java build 28-Nov-2025 17:47:24 J2S transpiling (189/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/APopupMenu.java build 28-Nov-2025 17:47:25 J2S transpiling (190/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AlignFrame.java build 28-Nov-2025 17:47:25 J2S transpiling (191/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AlignViewport.java build 28-Nov-2025 17:47:25 J2S transpiling (192/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AlignmentPanel.java build 28-Nov-2025 17:47:25 J2S transpiling (193/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationColourChooser.java build 28-Nov-2025 17:47:25 J2S transpiling (194/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationColumnChooser.java build 28-Nov-2025 17:47:25 J2S transpiling (195/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationLabels.java build 28-Nov-2025 17:47:25 J2S transpiling (196/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationPanel.java build 28-Nov-2025 17:47:25 J2S transpiling (197/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationRowFilter.java build 28-Nov-2025 17:47:25 J2S transpiling (198/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AppletJmol.java build 28-Nov-2025 17:47:26 J2S transpiling (199/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AppletJmolBinding.java build 28-Nov-2025 17:47:26 J2S transpiling (200/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/CutAndPasteTransfer.java build 28-Nov-2025 17:47:26 J2S transpiling (201/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/EditNameDialog.java build 28-Nov-2025 17:47:26 J2S transpiling (202/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/EmbmenuFrame.java build 28-Nov-2025 17:47:26 J2S transpiling (203/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/ExtJmol.java build 28-Nov-2025 17:47:26 J2S transpiling (204/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/FeatureColourChooser.java build 28-Nov-2025 17:47:26 J2S transpiling (205/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/FeatureRenderer.java build 28-Nov-2025 17:47:26 J2S transpiling (206/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/FeatureSettings.java build 28-Nov-2025 17:47:26 J2S transpiling (207/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/Finder.java build 28-Nov-2025 17:47:26 J2S transpiling (208/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/FontChooser.java build 28-Nov-2025 17:47:26 J2S transpiling (209/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/IdCanvas.java build 28-Nov-2025 17:47:26 J2S transpiling (210/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/IdPanel.java build 28-Nov-2025 17:47:26 J2S transpiling (211/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/IdwidthAdjuster.java build 28-Nov-2025 17:47:26 J2S transpiling (212/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/JVDialog.java build 28-Nov-2025 17:47:26 J2S transpiling (213/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/OverviewCanvas.java build 28-Nov-2025 17:47:26 >>class jalview.appletgui.OverviewCanvas extended java.awt.Component now extends java.awt.Label build 28-Nov-2025 17:47:26 J2S transpiling (214/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/OverviewPanel.java build 28-Nov-2025 17:47:26 J2S transpiling (215/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/PCAPanel.java build 28-Nov-2025 17:47:26 J2S transpiling (216/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/PaintRefresher.java build 28-Nov-2025 17:47:26 J2S transpiling (217/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/PairwiseAlignPanel.java build 28-Nov-2025 17:47:26 J2S transpiling (218/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/RedundancyPanel.java build 28-Nov-2025 17:47:27 J2S transpiling (219/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/RotatableCanvas.java build 28-Nov-2025 17:47:28 J2S transpiling (220/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/ScalePanel.java build 28-Nov-2025 17:47:28 J2S transpiling (221/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SeqCanvas.java build 28-Nov-2025 17:47:28 J2S transpiling (222/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SeqPanel.java build 28-Nov-2025 17:47:28 J2S transpiling (223/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SequenceRenderer.java build 28-Nov-2025 17:47:28 J2S transpiling (224/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SliderPanel.java build 28-Nov-2025 17:47:28 J2S transpiling (225/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SplitFrame.java build 28-Nov-2025 17:47:28 J2S transpiling (226/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/TitledPanel.java build 28-Nov-2025 17:47:28 J2S transpiling (227/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/Tooltip.java build 28-Nov-2025 17:47:28 J2S transpiling (228/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/TreeCanvas.java build 28-Nov-2025 17:47:28 J2S transpiling (229/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/TreePanel.java build 28-Nov-2025 17:47:28 J2S transpiling (230/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/UserDefinedColours.java build 28-Nov-2025 17:47:28 J2S transpiling (231/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/ArgsParser.java build 28-Nov-2025 17:47:28 J2S transpiling (232/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/BuildDetails.java build 28-Nov-2025 17:47:28 J2S transpiling (233/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Cache.java build 28-Nov-2025 17:47:28 J2S transpiling (234/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Commands.java build 28-Nov-2025 17:47:28 J2S transpiling (235/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Console.java build 28-Nov-2025 17:47:28 J2S transpiling (236/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/GetMemory.java build 28-Nov-2025 17:47:28 J2S transpiling (237/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/GetdownLauncherUpdate.java build 28-Nov-2025 17:47:28 >>>main found for jalview.bin.GetdownLauncherUpdate build 28-Nov-2025 17:47:28 J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_GetdownLauncherUpdate.html build 28-Nov-2025 17:47:28 J2S transpiling (238/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/HiDPISetting.java build 28-Nov-2025 17:47:28 J2S transpiling (239/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Jalview.java build 28-Nov-2025 17:47:28 >>>main found for jalview.bin.Jalview build 28-Nov-2025 17:47:28 J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_Jalview.html build 28-Nov-2025 17:47:28 J2S transpiling (240/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/JalviewJS2.java build 28-Nov-2025 17:47:28 >>>main found for jalview.bin.JalviewJS2 build 28-Nov-2025 17:47:28 J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewJS2.html build 28-Nov-2025 17:47:28 J2S transpiling (241/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/JalviewLite.java build 28-Nov-2025 17:47:28 J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewLite_applet.html build 28-Nov-2025 17:47:28 J2S transpiling (242/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/JalviewLiteURLRetrieve.java build 28-Nov-2025 17:47:28 J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewLiteURLRetrieve_applet.html build 28-Nov-2025 17:47:28 J2S transpiling (243/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/JalviewTaskbar.java build 28-Nov-2025 17:47:28 J2S transpiling (244/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Launcher.java build 28-Nov-2025 17:47:28 >>>main found for jalview.bin.Launcher build 28-Nov-2025 17:47:28 J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_Launcher.html build 28-Nov-2025 17:47:28 J2S transpiling (245/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/MemorySetting.java build 28-Nov-2025 17:47:28 J2S transpiling (246/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/ScreenInfo.java build 28-Nov-2025 17:47:28 J2S transpiling (247/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/Arg.java build 28-Nov-2025 17:47:28 J2S transpiling (248/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/ArgParser.java build 28-Nov-2025 17:47:28 J2S transpiling (249/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/ArgValue.java build 28-Nov-2025 17:47:28 J2S transpiling (250/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/ArgValues.java build 28-Nov-2025 17:47:28 J2S transpiling (251/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/ArgValuesMap.java build 28-Nov-2025 17:47:28 J2S transpiling (252/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/BootstrapArgs.java build 28-Nov-2025 17:47:28 J2S transpiling (253/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/StructureLine.java build 28-Nov-2025 17:47:28 J2S transpiling (254/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/StructuresFile.java build 28-Nov-2025 17:47:28 J2S transpiling (255/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/SubVals.java build 28-Nov-2025 17:47:28 J2S transpiling (256/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/groovy/JalviewObject.java build 28-Nov-2025 17:47:28 J2S transpiling (257/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/groovy/JalviewObjectI.java build 28-Nov-2025 17:47:28 J2S transpiling (258/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/ChangeCaseCommand.java build 28-Nov-2025 17:47:28 J2S transpiling (259/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/CommandI.java build 28-Nov-2025 17:47:28 J2S transpiling (260/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/EditCommand.java build 28-Nov-2025 17:47:29 J2S transpiling (261/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/JustifyLeftOrRightCommand.java build 28-Nov-2025 17:47:29 J2S transpiling (262/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/OrderCommand.java build 28-Nov-2025 17:47:29 J2S transpiling (263/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/RemoveGapColCommand.java build 28-Nov-2025 17:47:29 J2S transpiling (264/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/RemoveGapsCommand.java build 28-Nov-2025 17:47:29 J2S transpiling (265/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/SlideSequencesCommand.java build 28-Nov-2025 17:47:29 J2S transpiling (266/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/TrimRegionCommand.java build 28-Nov-2025 17:47:29 J2S transpiling (267/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/controller/AlignViewController.java build 28-Nov-2025 17:47:29 J2S transpiling (268/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/controller/FeatureSettingsController.java build 28-Nov-2025 17:47:29 J2S transpiling (269/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/controller/FeatureSettingsControllerGuiI.java build 28-Nov-2025 17:47:29 J2S transpiling (270/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ASequence.java build 28-Nov-2025 17:47:29 J2S transpiling (271/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ASequenceI.java build 28-Nov-2025 17:47:29 J2S transpiling (272/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AlignExportSettingsAdapter.java build 28-Nov-2025 17:47:29 J2S transpiling (273/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AlignedCodon.java build 28-Nov-2025 17:47:29 J2S transpiling (274/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AlignedCodonFrame.java build 28-Nov-2025 17:47:29 J2S transpiling (275/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Alignment.java build 28-Nov-2025 17:47:29 J2S transpiling (276/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AlignmentAnnotation.java build 28-Nov-2025 17:47:29 J2S transpiling (277/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AlignmentExportData.java build 28-Nov-2025 17:47:29 J2S transpiling (278/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AlignmentI.java build 28-Nov-2025 17:47:29 J2S transpiling (279/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AlignmentOrder.java build 28-Nov-2025 17:47:29 J2S transpiling (280/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AlignmentView.java build 28-Nov-2025 17:47:29 J2S transpiling (281/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AllColsCollection.java build 28-Nov-2025 17:47:29 J2S transpiling (282/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AllColsIterator.java build 28-Nov-2025 17:47:29 J2S transpiling (283/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AllRowsCollection.java build 28-Nov-2025 17:47:29 J2S transpiling (284/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AllRowsIterator.java build 28-Nov-2025 17:47:29 J2S transpiling (285/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/AnnotatedCollectionI.java build 28-Nov-2025 17:47:29 J2S transpiling (286/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Annotation.java build 28-Nov-2025 17:47:29 J2S transpiling (287/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/BinaryNode.java build 28-Nov-2025 17:47:29 J2S transpiling (288/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/BinarySequence.java build 28-Nov-2025 17:47:29 J2S transpiling (289/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/CigarArray.java build 28-Nov-2025 17:47:29 J2S transpiling (290/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/CigarBase.java build 28-Nov-2025 17:47:29 J2S transpiling (291/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/CigarCigar.java build 28-Nov-2025 17:47:29 J2S transpiling (292/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/CigarSimple.java build 28-Nov-2025 17:47:29 J2S transpiling (293/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ColumnSelection.java build 28-Nov-2025 17:47:29 J2S transpiling (294/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContactListI.java build 28-Nov-2025 17:47:29 J2S transpiling (295/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContactListImpl.java build 28-Nov-2025 17:47:29 J2S transpiling (296/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContactListProviderI.java build 28-Nov-2025 17:47:29 J2S transpiling (297/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContactMapHolder.java build 28-Nov-2025 17:47:29 J2S transpiling (298/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContactMapHolderI.java build 28-Nov-2025 17:47:29 J2S transpiling (299/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContactMatrix.java build 28-Nov-2025 17:47:29 J2S transpiling (300/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContactMatrixI.java build 28-Nov-2025 17:47:30 J2S transpiling (301/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContactRange.java build 28-Nov-2025 17:47:30 J2S transpiling (302/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ContiguousI.java build 28-Nov-2025 17:47:30 J2S transpiling (303/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/DBRefEntry.java build 28-Nov-2025 17:47:30 J2S transpiling (304/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/DBRefSource.java build 28-Nov-2025 17:47:30 J2S transpiling (305/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/FeatureProperties.java build 28-Nov-2025 17:47:30 J2S transpiling (306/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/FloatContactMatrix.java build 28-Nov-2025 17:47:30 J2S transpiling (307/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/GeneLociI.java build 28-Nov-2025 17:47:30 J2S transpiling (308/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/GeneLocus.java build 28-Nov-2025 17:47:30 J2S transpiling (309/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/GraphLine.java build 28-Nov-2025 17:47:30 J2S transpiling (310/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/GroupSet.java build 28-Nov-2025 17:47:30 J2S transpiling (311/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/GroupSetHolder.java build 28-Nov-2025 17:47:30 J2S transpiling (312/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/GroupSetI.java build 28-Nov-2025 17:47:30 J2S transpiling (313/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/HiddenColumns.java build 28-Nov-2025 17:47:30 J2S transpiling (314/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/HiddenColumnsCursor.java build 28-Nov-2025 17:47:30 J2S transpiling (315/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/HiddenCursorPosition.java build 28-Nov-2025 17:47:30 J2S transpiling (316/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/HiddenSequences.java build 28-Nov-2025 17:47:30 J2S transpiling (317/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/IncompleteCodonException.java build 28-Nov-2025 17:47:30 J2S transpiling (318/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/MappedFeatures.java build 28-Nov-2025 17:47:30 J2S transpiling (319/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Mapping.java build 28-Nov-2025 17:47:30 J2S transpiling (320/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/MappingType.java build 28-Nov-2025 17:47:30 J2S transpiling (321/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/NodeTransformI.java build 28-Nov-2025 17:47:30 J2S transpiling (322/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/PDBEntry.java build 28-Nov-2025 17:47:30 J2S transpiling (323/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Point.java build 28-Nov-2025 17:47:30 J2S transpiling (324/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Profile.java build 28-Nov-2025 17:47:30 J2S transpiling (325/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ProfileI.java build 28-Nov-2025 17:47:30 J2S transpiling (326/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Profiles.java build 28-Nov-2025 17:47:30 J2S transpiling (327/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ProfilesI.java build 28-Nov-2025 17:47:30 J2S transpiling (328/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Provenance.java build 28-Nov-2025 17:47:30 J2S transpiling (329/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ProvenanceEntry.java build 28-Nov-2025 17:47:30 J2S transpiling (330/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Range.java build 28-Nov-2025 17:47:30 J2S transpiling (331/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/RangeElementsIterator.java build 28-Nov-2025 17:47:30 J2S transpiling (332/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SecondaryStructureAnnotation.java build 28-Nov-2025 17:47:30 J2S transpiling (339/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SecondaryStructureCount.java build 28-Nov-2025 17:47:30 J2S transpiling (340/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SeqCigar.java build 28-Nov-2025 17:47:30 J2S transpiling (341/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SeqDistanceContactMatrix.java build 28-Nov-2025 17:47:30 J2S transpiling (342/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/Sequence.java build 28-Nov-2025 17:47:30 J2S transpiling (343/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SequenceCollectionI.java build 28-Nov-2025 17:47:30 J2S transpiling (344/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SequenceCursor.java build 28-Nov-2025 17:47:30 J2S transpiling (345/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SequenceDummy.java build 28-Nov-2025 17:47:30 J2S transpiling (346/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SequenceFeature.java build 28-Nov-2025 17:47:30 J2S transpiling (347/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SequenceGroup.java build 28-Nov-2025 17:47:30 J2S transpiling (348/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SequenceI.java build 28-Nov-2025 17:47:30 J2S transpiling (349/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SequenceNode.java build 28-Nov-2025 17:47:30 J2S transpiling (350/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/SequencePoint.java build 28-Nov-2025 17:47:30 J2S transpiling (351/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/StartRegionIterator.java build 28-Nov-2025 17:47:30 J2S transpiling (352/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/StructureViewerModel.java build 28-Nov-2025 17:47:30 J2S transpiling (353/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/VisibleColsCollection.java build 28-Nov-2025 17:47:30 J2S transpiling (354/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/VisibleContigsIterator.java build 28-Nov-2025 17:47:30 J2S transpiling (355/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/VisibleRowsCollection.java build 28-Nov-2025 17:47:30 J2S transpiling (356/1108) 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build 28-Nov-2025 17:47:30 J2S transpiling (362/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureLocationI.java build 28-Nov-2025 17:47:30 J2S transpiling (363/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureMatcher.java build 28-Nov-2025 17:47:30 J2S transpiling (364/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureMatcherI.java build 28-Nov-2025 17:47:30 J2S transpiling (365/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureMatcherSet.java build 28-Nov-2025 17:47:30 J2S transpiling (366/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureMatcherSetI.java build 28-Nov-2025 17:47:30 J2S transpiling (367/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureSource.java build 28-Nov-2025 17:47:30 J2S transpiling (368/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureSourceI.java build 28-Nov-2025 17:47:30 J2S transpiling (369/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureSources.java build 28-Nov-2025 17:47:30 J2S transpiling (370/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/FeatureStore.java build 28-Nov-2025 17:47:30 J2S transpiling (371/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/SequenceFeatures.java build 28-Nov-2025 17:47:30 J2S transpiling (372/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/features/SequenceFeaturesI.java build 28-Nov-2025 17:47:30 J2S transpiling (373/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/exceptions/JalviewException.java build 28-Nov-2025 17:47:30 J2S transpiling (374/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/android/ContainerHelpers.java build 28-Nov-2025 17:47:30 J2S transpiling (375/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/android/SparseDoubleArray.java build 28-Nov-2025 17:47:30 J2S transpiling (376/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/android/SparseIntArray.java build 28-Nov-2025 17:47:30 J2S transpiling (377/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/android/SparseShortArray.java build 28-Nov-2025 17:47:30 J2S transpiling (378/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblCdna.java build 28-Nov-2025 17:47:30 J2S transpiling (379/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblCds.java build 28-Nov-2025 17:47:30 J2S transpiling (380/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblData.java build 28-Nov-2025 17:47:30 J2S transpiling (381/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblFeatures.java build 28-Nov-2025 17:47:30 J2S transpiling (382/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblGene.java build 28-Nov-2025 17:47:30 J2S transpiling (383/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblGenome.java build 28-Nov-2025 17:47:30 J2S transpiling (384/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblGenomes.java build 28-Nov-2025 17:47:30 J2S transpiling (385/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblInfo.java build 28-Nov-2025 17:47:31 J2S transpiling (386/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblLookup.java build 28-Nov-2025 17:47:31 J2S transpiling (387/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblMap.java build 28-Nov-2025 17:47:31 J2S transpiling (388/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblProtein.java build 28-Nov-2025 17:47:31 J2S transpiling (389/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblRestClient.java build 28-Nov-2025 17:47:31 J2S transpiling (390/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblSeqProxy.java build 28-Nov-2025 17:47:31 J2S transpiling (391/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java build 28-Nov-2025 17:47:31 J2S transpiling (392/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblSymbol.java build 28-Nov-2025 17:47:31 J2S transpiling (393/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/EnsemblXref.java build 28-Nov-2025 17:47:31 J2S transpiling (394/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/ensembl/Species.java build 28-Nov-2025 17:47:31 J2S transpiling (395/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/htsjdk/HtsContigDb.java build 28-Nov-2025 17:47:31 J2S transpiling (396/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/htsjdk/VCFReader.java build 28-Nov-2025 17:47:31 J2S transpiling (397/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/jmol/JalviewJmolBinding.java build 28-Nov-2025 17:47:31 J2S transpiling (398/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/jmol/JmolCommands.java build 28-Nov-2025 17:47:31 J2S transpiling (399/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/jmol/JmolParser.java build 28-Nov-2025 17:47:31 J2S transpiling (400/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/paradise/Annotate3D.java build 28-Nov-2025 17:47:31 J2S transpiling (401/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/pymol/PymolCommands.java build 28-Nov-2025 17:47:31 J2S transpiling (402/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/pymol/PymolManager.java build 28-Nov-2025 17:47:31 J2S transpiling (403/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/rbvi/chimera/ChimeraCommands.java build 28-Nov-2025 17:47:31 J2S transpiling (404/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/rbvi/chimera/ChimeraListener.java build 28-Nov-2025 17:47:31 J2S transpiling (405/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/rbvi/chimera/ChimeraXCommands.java build 28-Nov-2025 17:47:31 J2S transpiling (406/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/rbvi/chimera/ChimeraXManager.java build 28-Nov-2025 17:47:31 J2S transpiling (407/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java build 28-Nov-2025 17:47:31 J2S transpiling (408/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/so/SequenceOntology.java build 28-Nov-2025 17:47:31 J2S transpiling (409/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/varna/JalviewVarnaBinding.java build 28-Nov-2025 17:47:31 J2S transpiling (410/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/varna/RnaModel.java build 28-Nov-2025 17:47:31 J2S transpiling (411/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ext/varna/VarnaCommands.java build 28-Nov-2025 17:47:31 J2S transpiling (412/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/api/FTSData.java build 28-Nov-2025 17:47:31 J2S transpiling (413/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/api/FTSDataColumnI.java build 28-Nov-2025 17:47:31 J2S transpiling (414/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/api/FTSRestClientI.java build 28-Nov-2025 17:47:31 J2S transpiling (415/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/api/GFTSPanelI.java build 28-Nov-2025 17:47:31 J2S transpiling (416/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/api/StructureFTSRestClientI.java build 28-Nov-2025 17:47:31 J2S transpiling (417/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/core/DecimalFormatTableCellRenderer.java build 28-Nov-2025 17:47:31 J2S transpiling (418/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/core/FTSDataColumnPreferences.java build 28-Nov-2025 17:47:31 J2S transpiling (419/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/core/FTSRestClient.java build 28-Nov-2025 17:47:31 J2S transpiling (420/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/core/FTSRestRequest.java build 28-Nov-2025 17:47:31 J2S transpiling (421/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/core/FTSRestResponse.java build 28-Nov-2025 17:47:31 J2S transpiling (422/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/core/GFTSPanel.java build 28-Nov-2025 17:47:31 J2S transpiling (423/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/service/alphafold/AlphafoldRestClient.java build 28-Nov-2025 17:47:31 J2S transpiling (424/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/service/pdb/PDBFTSPanel.java build 28-Nov-2025 17:47:31 J2S transpiling (425/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/service/pdb/PDBFTSRestClient.java build 28-Nov-2025 17:47:32 J2S transpiling (426/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/service/threedbeacons/TDB_FTSData.java build 28-Nov-2025 17:47:32 J2S transpiling (427/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/service/threedbeacons/TDBeaconsFTSPanel.java build 28-Nov-2025 17:47:32 J2S transpiling (428/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/service/threedbeacons/TDBeaconsFTSRestClient.java build 28-Nov-2025 17:47:32 J2S transpiling (429/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/service/uniprot/UniProtFTSRestClient.java build 28-Nov-2025 17:47:32 J2S transpiling (430/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/fts/service/uniprot/UniprotFTSPanel.java build 28-Nov-2025 17:47:32 J2S transpiling (431/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/APQHandlers.java build 28-Nov-2025 17:47:32 J2S transpiling (432/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AlignExportOptions.java build 28-Nov-2025 17:47:33 J2S transpiling (433/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AlignFrame.java build 28-Nov-2025 17:47:33 J2S transpiling (434/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AlignViewport.java build 28-Nov-2025 17:47:33 J2S transpiling (435/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AlignmentPanel.java build 28-Nov-2025 17:47:33 J2S transpiling (436/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AnnotationChooser.java build 28-Nov-2025 17:47:33 J2S transpiling (437/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AnnotationColourChooser.java build 28-Nov-2025 17:47:33 J2S transpiling (438/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AnnotationColumnChooser.java build 28-Nov-2025 17:47:33 J2S transpiling (439/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AppVarna.java build 28-Nov-2025 17:47:33 J2S transpiling (446/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AppVarnaBinding.java build 28-Nov-2025 17:47:33 J2S transpiling (447/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/AssociatePdbFileWithSeq.java build 28-Nov-2025 17:47:33 J2S transpiling (448/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/BlogReader.java build 28-Nov-2025 17:47:33 J2S transpiling (449/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/CalculationChooser.java build 28-Nov-2025 17:47:33 J2S transpiling (450/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/ChimeraViewFrame.java build 28-Nov-2025 17:47:33 J2S transpiling (451/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/ChimeraXViewFrame.java build 28-Nov-2025 17:47:33 J2S transpiling (452/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/ColourMenuHelper.java build 28-Nov-2025 17:47:33 J2S transpiling (453/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/ComboBoxTooltipRenderer.java build 28-Nov-2025 17:47:34 J2S transpiling (454/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/Console.java build 28-Nov-2025 17:47:34 J2S transpiling (455/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/CrossRefAction.java build 28-Nov-2025 17:47:34 J2S transpiling (456/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/CutAndPasteHtmlTransfer.java build 28-Nov-2025 17:47:34 J2S transpiling (457/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/OverviewCanvas.java build 28-Nov-2025 17:47:35 J2S transpiling (488/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/OverviewPanel.java build 28-Nov-2025 17:47:35 J2S transpiling (489/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/PCAPanel.java build 28-Nov-2025 17:47:35 J2S transpiling (490/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/PaSiMapPanel.java build 28-Nov-2025 17:47:35 J2S transpiling (491/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/PaintRefresher.java build 28-Nov-2025 17:47:35 J2S transpiling (492/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/PairwiseAlignPanel.java build 28-Nov-2025 17:47:35 J2S transpiling (493/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/ScalePanel.java build 28-Nov-2025 17:47:36 J2S transpiling (506/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/SeqCanvas.java build 28-Nov-2025 17:47:36 J2S transpiling (507/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/SeqPanel.java build 28-Nov-2025 17:47:36 J2S transpiling (508/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/SequenceFetcher.java build 28-Nov-2025 17:47:37 J2S transpiling (509/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/SequenceRenderer.java build 28-Nov-2025 17:47:37 J2S transpiling (510/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/Slider.java build 28-Nov-2025 17:47:37 J2S transpiling (511/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/SliderPanel.java build 28-Nov-2025 17:47:37 J2S transpiling (512/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/SplashScreen.java build 28-Nov-2025 17:47:37 J2S transpiling (513/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/SplitFrame.java build 28-Nov-2025 17:47:37 J2S transpiling (514/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/StructureChooser.java build 28-Nov-2025 17:47:37 J2S transpiling (515/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/StructureViewer.java build 28-Nov-2025 17:47:37 J2S transpiling (516/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/StructureViewerBase.java build 28-Nov-2025 17:47:37 J2S transpiling (517/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/gui/TextColourChooser.java build 28-Nov-2025 17:47:37 J2S transpiling (518/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/AlignmentFileReaderI.java build 28-Nov-2025 17:47:38 J2S transpiling (537/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/AlignmentFileWriterI.java build 28-Nov-2025 17:47:38 J2S transpiling (538/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/AlignmentProperties.java build 28-Nov-2025 17:47:38 J2S transpiling (539/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/AnnotationFile.java build 28-Nov-2025 17:47:38 J2S transpiling (540/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/AppletFormatAdapter.java build 28-Nov-2025 17:47:38 J2S transpiling (541/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/BLCFile.java build 28-Nov-2025 17:47:38 J2S transpiling (542/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/BackupFilenameFilter.java build 28-Nov-2025 17:47:38 J2S transpiling (543/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/BackupFilenameParts.java build 28-Nov-2025 17:47:38 J2S transpiling (544/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/BackupFiles.java build 28-Nov-2025 17:47:38 J2S transpiling (545/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/BackupFilesPresetEntry.java build 28-Nov-2025 17:47:38 J2S transpiling (546/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/BioJsHTMLOutput.java build 28-Nov-2025 17:47:38 J2S transpiling (547/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/ClustalFile.java build 28-Nov-2025 17:47:38 J2S transpiling (548/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/DBRefFile.java build 28-Nov-2025 17:47:38 J2S transpiling (549/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/DataSourceType.java build 28-Nov-2025 17:47:38 J2S transpiling (550/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/EMBLLikeFlatFile.java build 28-Nov-2025 17:47:38 J2S transpiling (551/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/EmblFlatFile.java build 28-Nov-2025 17:47:38 J2S transpiling (552/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FastaFile.java build 28-Nov-2025 17:47:38 J2S transpiling (553/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FeaturesFile.java build 28-Nov-2025 17:47:38 J2S transpiling (554/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FileFormat.java build 28-Nov-2025 17:47:38 J2S transpiling (555/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FileFormatException.java build 28-Nov-2025 17:47:38 J2S transpiling (556/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FileFormatI.java build 28-Nov-2025 17:47:38 J2S transpiling (557/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FileFormats.java build 28-Nov-2025 17:47:38 J2S transpiling (558/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FileLoader.java build 28-Nov-2025 17:47:40 J2S transpiling (559/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FileParse.java build 28-Nov-2025 17:47:40 J2S transpiling (560/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/FormatAdapter.java build 28-Nov-2025 17:47:40 J2S transpiling (561/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/GenBankFile.java build 28-Nov-2025 17:47:40 J2S transpiling (562/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/HTMLOutput.java build 28-Nov-2025 17:47:40 J2S transpiling (563/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/HtmlFile.java build 28-Nov-2025 17:47:40 J2S transpiling (564/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/HtmlSvgOutput.java build 28-Nov-2025 17:47:40 J2S transpiling (565/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/IdentifyFile.java build 28-Nov-2025 17:47:40 J2S transpiling (566/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/InputStreamParser.java build 28-Nov-2025 17:47:40 J2S transpiling (567/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/IntKeyStringValueEntry.java build 28-Nov-2025 17:47:40 J2S transpiling (568/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/JPredFile.java build 28-Nov-2025 17:47:40 J2S transpiling (569/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/JSONFile.java build 28-Nov-2025 17:47:40 J2S transpiling (570/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/JalviewFileChooser.java build 28-Nov-2025 17:47:40 J2S transpiling (571/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/JalviewFileFilter.java build 28-Nov-2025 17:47:40 J2S transpiling (572/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/JalviewFileView.java build 28-Nov-2025 17:47:40 J2S transpiling (573/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/JnetAnnotationMaker.java build 28-Nov-2025 17:47:40 J2S transpiling (574/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/MSFfile.java build 28-Nov-2025 17:47:40 J2S transpiling (575/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/ModellerDescription.java build 28-Nov-2025 17:47:40 J2S transpiling (576/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/NewickFile.java build 28-Nov-2025 17:47:40 J2S transpiling (577/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/PContactPredictionFile.java build 28-Nov-2025 17:47:40 J2S transpiling (578/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/PDBFeatureSettings.java build 28-Nov-2025 17:47:40 J2S transpiling (579/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/PIRFile.java build 28-Nov-2025 17:47:40 J2S transpiling (580/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/PfamFile.java build 28-Nov-2025 17:47:40 J2S transpiling (581/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/PhylipFile.java build 28-Nov-2025 17:47:40 J2S transpiling (582/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/PileUpfile.java build 28-Nov-2025 17:47:40 J2S transpiling (583/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/RnamlFile.java build 28-Nov-2025 17:47:40 J2S transpiling (584/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/ScoreMatrixFile.java build 28-Nov-2025 17:47:40 J2S transpiling (585/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/SequenceAnnotationReport.java build 28-Nov-2025 17:47:40 J2S transpiling (586/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/SimpleBlastFile.java build 28-Nov-2025 17:47:40 J2S transpiling (587/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/StockholmFile.java build 28-Nov-2025 17:47:40 J2S transpiling (588/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/StructureFile.java build 28-Nov-2025 17:47:40 J2S transpiling (589/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/TCoffeeScoreFile.java build 28-Nov-2025 17:47:40 J2S transpiling (590/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/VamsasAppDatastore.java build 28-Nov-2025 17:47:40 J2S transpiling (591/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/WSWUBlastClient.java build 28-Nov-2025 17:47:40 J2S transpiling (592/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/cache/AppCache.java build 28-Nov-2025 17:47:40 J2S transpiling (593/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/cache/JvCacheableInputBox.java build 28-Nov-2025 17:47:40 J2S transpiling (594/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/exceptions/ImageOutputException.java build 28-Nov-2025 17:47:40 J2S transpiling (595/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/ExonerateHelper.java build 28-Nov-2025 17:47:40 J2S transpiling (596/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/Gff2Helper.java build 28-Nov-2025 17:47:40 J2S transpiling (597/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/Gff3Helper.java build 28-Nov-2025 17:47:40 J2S transpiling (598/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/GffConstants.java build 28-Nov-2025 17:47:40 J2S transpiling (599/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/GffHelperBase.java build 28-Nov-2025 17:47:40 J2S transpiling (600/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/GffHelperFactory.java build 28-Nov-2025 17:47:40 J2S transpiling (601/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/GffHelperI.java build 28-Nov-2025 17:47:40 J2S transpiling (602/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/InterProScanHelper.java build 28-Nov-2025 17:47:40 J2S transpiling (603/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/SequenceOntologyFactory.java build 28-Nov-2025 17:47:40 J2S transpiling (604/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/SequenceOntologyI.java build 28-Nov-2025 17:47:40 J2S transpiling (605/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/gff/SequenceOntologyLite.java build 28-Nov-2025 17:47:40 J2S transpiling (606/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/packed/DataProvider.java build 28-Nov-2025 17:47:40 J2S transpiling (607/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/packed/JalviewDataset.java build 28-Nov-2025 17:47:40 J2S transpiling (608/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/packed/ParsePackedSet.java build 28-Nov-2025 17:47:40 J2S transpiling (609/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/packed/SimpleDataProvider.java build 28-Nov-2025 17:47:40 J2S transpiling (610/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/Datasetsequence.java build 28-Nov-2025 17:47:40 J2S transpiling (611/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/DatastoreItem.java build 28-Nov-2025 17:47:40 J2S transpiling (612/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/DatastoreRegistry.java build 28-Nov-2025 17:47:40 J2S transpiling (613/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/Dbref.java build 28-Nov-2025 17:47:40 J2S transpiling (614/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/LocalDocSyncObject.java build 28-Nov-2025 17:47:40 J2S transpiling (615/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/Rangetype.java build 28-Nov-2025 17:47:40 J2S transpiling (616/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/Sequencefeature.java build 28-Nov-2025 17:47:40 J2S transpiling (617/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/Sequencemapping.java build 28-Nov-2025 17:47:40 J2S transpiling (618/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vamsas/Tree.java build 28-Nov-2025 17:47:40 J2S transpiling (619/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/io/vcf/VCFLoader.java build 28-Nov-2025 17:47:40 J2S transpiling (620/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/JSFunctionExec.java build 28-Nov-2025 17:47:40 J2S transpiling (621/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/JalviewLiteJsApi.java build 28-Nov-2025 17:47:40 J2S transpiling (622/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/JsCallBack.java build 28-Nov-2025 17:47:40 J2S transpiling (623/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/JsSelectionSender.java build 28-Nov-2025 17:47:40 J2S transpiling (624/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/MouseOverListener.java build 28-Nov-2025 17:47:40 J2S transpiling (625/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/MouseOverStructureListener.java build 28-Nov-2025 17:47:40 J2S transpiling (626/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/json/JSON.java build 28-Nov-2025 17:47:40 J2S transpiling (627/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/web/Client.java build 28-Nov-2025 17:47:40 J2S transpiling (628/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/web/ClientResponse.java build 28-Nov-2025 17:47:40 J2S transpiling (629/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/javascript/web/WebResource.java build 28-Nov-2025 17:47:40 J2S transpiling (630/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/FilterOption.java build 28-Nov-2025 17:47:40 J2S transpiling (631/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GAlignFrame.java build 28-Nov-2025 17:47:41 J2S transpiling (632/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GAlignmentPanel.java build 28-Nov-2025 17:47:41 J2S transpiling (633/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java build 28-Nov-2025 17:47:41 J2S transpiling (634/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GCutAndPasteTransfer.java build 28-Nov-2025 17:47:41 J2S transpiling (635/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GDesktop.java build 28-Nov-2025 17:47:41 J2S transpiling (636/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GFinder.java build 28-Nov-2025 17:47:41 J2S transpiling (637/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GFontChooser.java build 28-Nov-2025 17:47:41 J2S transpiling (638/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GPCAPanel.java build 28-Nov-2025 17:47:41 J2S transpiling (639/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GPaSiMapPanel.java build 28-Nov-2025 17:47:41 J2S transpiling (640/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GPairwiseAlignPanel.java build 28-Nov-2025 17:47:41 J2S transpiling (641/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GPreferences.java build 28-Nov-2025 17:47:41 J2S transpiling (642/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GRestInputParamEditDialog.java build 28-Nov-2025 17:47:41 J2S transpiling (643/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GRestServiceEditorPane.java build 28-Nov-2025 17:47:41 J2S transpiling (644/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GRnaStructureViewer.java build 28-Nov-2025 17:47:42 J2S transpiling (645/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GSequenceLink.java build 28-Nov-2025 17:47:42 J2S transpiling (646/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GSliderPanel.java build 28-Nov-2025 17:47:42 J2S transpiling (647/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GSplitFrame.java build 28-Nov-2025 17:47:42 J2S transpiling (648/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GStructureChooser.java build 28-Nov-2025 17:47:42 J2S transpiling (649/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GStructureViewer.java build 28-Nov-2025 17:47:42 J2S transpiling (650/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GTreePanel.java build 28-Nov-2025 17:47:42 J2S transpiling (651/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GUserDefinedColours.java build 28-Nov-2025 17:47:42 J2S transpiling (652/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GWebserviceInfo.java build 28-Nov-2025 17:47:42 J2S transpiling (653/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/jbgui/GWsPreferences.java build 28-Nov-2025 17:47:42 J2S transpiling (654/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojs/BioJSReleasePojo.java build 28-Nov-2025 17:47:42 J2S transpiling (655/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojs/BioJSRepositoryPojo.java build 28-Nov-2025 17:47:42 J2S transpiling (656/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java build 28-Nov-2025 17:47:42 J2S transpiling (657/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojson/v1/AlignmentPojo.java build 28-Nov-2025 17:47:42 J2S transpiling (658/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojson/v1/AnnotationDisplaySettingPojo.java build 28-Nov-2025 17:47:42 J2S transpiling (659/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojson/v1/AnnotationPojo.java build 28-Nov-2025 17:47:42 J2S transpiling (660/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojson/v1/ColourSchemeMapper.java build 28-Nov-2025 17:47:42 J2S transpiling (661/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java build 28-Nov-2025 17:47:42 J2S transpiling (662/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java build 28-Nov-2025 17:47:42 J2S transpiling (663/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/json/binding/biojson/v1/SequencePojo.java build 28-Nov-2025 17:47:42 J2S transpiling (664/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/log/JLogger.java build 28-Nov-2025 17:47:42 J2S transpiling (665/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/log/JLoggerI.java build 28-Nov-2025 17:47:42 J2S transpiling (666/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/log/JLoggerLog4j.java build 28-Nov-2025 17:47:42 J2S transpiling (667/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/log/JalviewAppender.java build 28-Nov-2025 17:47:42 J2S transpiling (668/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/math/AlignmentDimension.java build 28-Nov-2025 17:47:42 J2S transpiling (669/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/math/Matrix.java build 28-Nov-2025 17:47:42 J2S transpiling (670/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/math/MatrixI.java build 28-Nov-2025 17:47:42 J2S transpiling (671/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/math/MiscMath.java build 28-Nov-2025 17:47:42 J2S transpiling (672/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/math/RotatableMatrix.java build 28-Nov-2025 17:47:42 J2S transpiling (673/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/math/SameLengthException.java build 28-Nov-2025 17:47:42 J2S transpiling (674/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/math/SparseMatrix.java build 28-Nov-2025 17:47:42 J2S transpiling (675/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/project/Jalview2XML.java build 28-Nov-2025 17:47:42 J2S transpiling (676/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/AnnotationRenderer.java build 28-Nov-2025 17:47:42 J2S transpiling (677/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/AnnotationRendererFactory.java build 28-Nov-2025 17:47:42 J2S transpiling (678/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/AwtRenderPanelI.java build 28-Nov-2025 17:47:42 J2S transpiling (679/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/ContactGeometry.java build 28-Nov-2025 17:47:42 J2S transpiling (680/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/ContactMapRenderer.java build 28-Nov-2025 17:47:42 J2S transpiling (681/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/OverviewRenderer.java build 28-Nov-2025 17:47:42 J2S transpiling (682/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/OverviewResColourFinder.java build 28-Nov-2025 17:47:42 J2S transpiling (683/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/ResidueColourFinder.java build 28-Nov-2025 17:47:42 J2S transpiling (684/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/ResidueShader.java build 28-Nov-2025 17:47:42 J2S transpiling (685/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/ResidueShaderI.java build 28-Nov-2025 17:47:42 J2S transpiling (686/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/ScaleRenderer.java build 28-Nov-2025 17:47:42 J2S transpiling (687/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/api/AnnotationRendererFactoryI.java build 28-Nov-2025 17:47:42 J2S transpiling (688/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/api/AnnotationRowRendererI.java build 28-Nov-2025 17:47:42 J2S transpiling (689/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/seqfeatures/FeatureColourFinder.java build 28-Nov-2025 17:47:42 J2S transpiling (690/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/renderer/seqfeatures/FeatureRenderer.java build 28-Nov-2025 17:47:42 J2S transpiling (691/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/rest/RestHandler.java build 28-Nov-2025 17:47:42 J2S transpiling (692/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/AnnotationColourGradient.java build 28-Nov-2025 17:47:42 J2S transpiling (693/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/BlossomColourScheme.java build 28-Nov-2025 17:47:42 J2S transpiling (694/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/Blosum62ColourScheme.java build 28-Nov-2025 17:47:42 J2S transpiling (695/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/BuriedColourScheme.java build 28-Nov-2025 17:47:42 J2S transpiling (696/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ClustalxColourScheme.java build 28-Nov-2025 17:47:42 J2S transpiling (697/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ColourSchemeI.java build 28-Nov-2025 17:47:42 J2S transpiling (698/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ColourSchemeLoader.java build 28-Nov-2025 17:47:42 J2S transpiling (699/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ColourSchemeProperty.java build 28-Nov-2025 17:47:42 J2S transpiling (700/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ColourSchemes.java build 28-Nov-2025 17:47:42 J2S transpiling (701/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/Consensus.java build 28-Nov-2025 17:47:42 J2S transpiling (702/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/CovariationColourScheme.java build 28-Nov-2025 17:47:42 J2S transpiling (703/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/FeatureColour.java build 28-Nov-2025 17:47:42 J2S transpiling (704/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/FeatureSettingsAdapter.java build 28-Nov-2025 17:47:43 J2S transpiling (705/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/FlowerColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (706/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/FollowerColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (707/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/HelixColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (708/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/HydrophobicColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (709/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/IdColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (710/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/JalviewColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (711/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/NucleotideAmbiguityColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (712/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/NucleotideColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (713/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/OceanColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (714/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/PIDColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (715/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/PurinePyrimidineColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (716/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/RNAHelicesColour.java build 28-Nov-2025 17:47:43 J2S transpiling (717/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/RNAHelicesColourChooser.java build 28-Nov-2025 17:47:43 J2S transpiling (718/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/RNAInteractionColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (719/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ResidueColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (720/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ResidueProperties.java build 28-Nov-2025 17:47:43 J2S transpiling (721/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ScoreColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (722/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/StrandColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (723/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/SunsetColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (724/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/TCoffeeColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (725/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/TaylorColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (726/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/TurnColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (727/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/UserColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (728/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/schemes/ZappoColourScheme.java build 28-Nov-2025 17:47:43 J2S transpiling (729/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/AlignmentViewPanelListener.java build 28-Nov-2025 17:47:43 J2S transpiling (730/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/AtomSpec.java build 28-Nov-2025 17:47:43 J2S transpiling (731/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/AtomSpecModel.java build 28-Nov-2025 17:47:43 J2S transpiling (732/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/CommandListener.java build 28-Nov-2025 17:47:43 J2S transpiling (733/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/SecondaryStructureListener.java build 28-Nov-2025 17:47:43 J2S transpiling (734/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/SelectionListener.java build 28-Nov-2025 17:47:43 J2S transpiling (735/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/SelectionSource.java build 28-Nov-2025 17:47:43 J2S transpiling (736/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/SequenceListener.java build 28-Nov-2025 17:47:43 J2S transpiling (737/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/StructureCommand.java build 28-Nov-2025 17:47:43 J2S transpiling (738/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/StructureCommandI.java build 28-Nov-2025 17:47:43 J2S transpiling (739/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/StructureCommandsBase.java build 28-Nov-2025 17:47:43 J2S transpiling (740/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/VamsasListener.java build 28-Nov-2025 17:47:43 J2S transpiling (747/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structure/VamsasSource.java build 28-Nov-2025 17:47:43 J2S transpiling (748/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structures/models/AAStructureBindingModel.java build 28-Nov-2025 17:47:43 J2S transpiling (749/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/structures/models/SequenceStructureBindingModel.java build 28-Nov-2025 17:47:43 J2S transpiling (750/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/urls/CustomUrlProvider.java build 28-Nov-2025 17:47:43 J2S transpiling (751/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/urls/IdOrgSettings.java build 28-Nov-2025 17:47:43 J2S transpiling (752/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/urls/IdentifiersUrlProvider.java build 28-Nov-2025 17:47:43 J2S transpiling (753/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/urls/UrlLinkDisplay.java build 28-Nov-2025 17:47:43 J2S transpiling (754/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/urls/UrlLinkTableModel.java build 28-Nov-2025 17:47:43 J2S transpiling (755/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/urls/UrlProvider.java build 28-Nov-2025 17:47:43 J2S transpiling (756/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/urls/UrlProviderImpl.java build 28-Nov-2025 17:47:43 J2S transpiling (757/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/urls/api/UrlProviderFactoryI.java build 28-Nov-2025 17:47:43 J2S transpiling (758/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/BrowserLauncher.java build 28-Nov-2025 17:47:44 J2S transpiling (765/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/CaseInsensitiveString.java build 28-Nov-2025 17:47:44 J2S transpiling (766/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ChannelProperties.java build 28-Nov-2025 17:47:44 J2S transpiling (767/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ColorUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (768/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/Comparison.java build 28-Nov-2025 17:47:44 J2S transpiling (769/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/Constants.java build 28-Nov-2025 17:47:44 J2S transpiling (770/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/DBRefUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (771/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/DigestUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (772/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/DnaUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (773/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ErrorLog.java build 28-Nov-2025 17:47:44 J2S transpiling (774/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/FileUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (775/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/Format.java build 28-Nov-2025 17:47:44 J2S transpiling (776/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/GroupUrlLink.java build 28-Nov-2025 17:47:44 J2S transpiling (777/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/HttpUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (778/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ImageMaker.java build 28-Nov-2025 17:47:44 J2S transpiling (779/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/IntRangeComparator.java build 28-Nov-2025 17:47:44 J2S transpiling (780/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/JSONUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (781/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/LaunchUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (782/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/LinkedIdentityHashSet.java build 28-Nov-2025 17:47:44 J2S transpiling (783/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/Log4j.java build 28-Nov-2025 17:47:44 J2S transpiling (784/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/MapList.java build 28-Nov-2025 17:47:44 J2S transpiling (785/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/MapUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (786/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/MappingUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (787/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/MathUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (788/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/MessageManager.java build 28-Nov-2025 17:47:44 J2S transpiling (789/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ParseHtmlBodyAndLinks.java build 28-Nov-2025 17:47:44 J2S transpiling (790/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/Platform.java build 28-Nov-2025 17:47:44 J2S transpiling (791/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/QuickSort.java build 28-Nov-2025 17:47:44 J2S transpiling (792/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ReverseListIterator.java build 28-Nov-2025 17:47:44 J2S transpiling (793/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/SetUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (794/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ShiftList.java build 28-Nov-2025 17:47:44 J2S transpiling (795/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ShortcutKeyMaskExWrapper.java build 28-Nov-2025 17:47:44 J2S transpiling (796/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ShortcutKeyMaskExWrapper11.java build 28-Nov-2025 17:47:44 J2S transpiling (797/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ShortcutKeyMaskExWrapper8.java build 28-Nov-2025 17:47:44 J2S transpiling (798/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/ShortcutKeyMaskExWrapperI.java build 28-Nov-2025 17:47:44 J2S transpiling (799/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/SparseCount.java build 28-Nov-2025 17:47:44 J2S transpiling (800/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/util/StringUtils.java build 28-Nov-2025 17:47:44 J2S transpiling (801/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/workers/AnnotationWorker.java build 28-Nov-2025 17:47:44 J2S transpiling (831/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/workers/ColumnCounterSetWorker.java build 28-Nov-2025 17:47:44 J2S transpiling (832/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/workers/ComplementConsensusThread.java build 28-Nov-2025 17:47:44 J2S transpiling (833/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/workers/ConsensusThread.java build 28-Nov-2025 17:47:44 J2S transpiling (834/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/workers/ConservationThread.java build 28-Nov-2025 17:47:44 J2S transpiling (835/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/workers/FeatureSetCounterI.java build 28-Nov-2025 17:47:44 J2S transpiling (836/1108) 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/JobStateSummary.java build 28-Nov-2025 17:47:45 J2S transpiling (843/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/SequenceFetcher.java build 28-Nov-2025 17:47:45 J2S transpiling (844/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/SequenceFetcherFactory.java build 28-Nov-2025 17:47:45 J2S transpiling (845/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/WSClient.java build 28-Nov-2025 17:47:45 J2S transpiling (846/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/WSClientI.java build 28-Nov-2025 17:47:45 J2S transpiling (847/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/WSMenuEntryProviderI.java build 28-Nov-2025 17:47:45 J2S transpiling (848/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/datamodel/MappableContactMatrixI.java build 28-Nov-2025 17:47:45 J2S transpiling (849/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/datamodel/alphafold/MappableContactMatrix.java build 28-Nov-2025 17:47:45 J2S transpiling (850/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java build 28-Nov-2025 17:47:45 J2S transpiling (851/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/EBIAlfaFold.java build 28-Nov-2025 17:47:45 J2S transpiling (852/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java build 28-Nov-2025 17:47:45 J2S transpiling (853/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/EmblCdsSource.java build 28-Nov-2025 17:47:45 J2S transpiling (854/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/EmblFlatfileSource.java build 28-Nov-2025 17:47:45 J2S transpiling (855/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/EmblSource.java build 28-Nov-2025 17:47:45 J2S transpiling (856/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/EmblXmlSource.java build 28-Nov-2025 17:47:45 J2S transpiling (857/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/GeneDbSource.java build 28-Nov-2025 17:47:45 J2S transpiling (858/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/Pdb.java build 28-Nov-2025 17:47:45 J2S transpiling (859/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/Pfam.java build 28-Nov-2025 17:47:45 J2S transpiling (860/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/PfamFull.java build 28-Nov-2025 17:47:45 J2S transpiling (861/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/PfamSeed.java build 28-Nov-2025 17:47:45 J2S transpiling (862/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/Rfam.java build 28-Nov-2025 17:47:45 J2S transpiling (863/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/RfamFull.java build 28-Nov-2025 17:47:45 J2S transpiling (864/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/RfamSeed.java build 28-Nov-2025 17:47:45 J2S transpiling (865/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/TDBeacons.java build 28-Nov-2025 17:47:45 J2S transpiling (866/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/Uniprot.java build 28-Nov-2025 17:47:45 J2S transpiling (867/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/UniprotName.java build 28-Nov-2025 17:47:45 J2S transpiling (868/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/dbsources/Xfam.java build 28-Nov-2025 17:47:45 J2S transpiling (869/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/ebi/EBIFetchClient.java build 28-Nov-2025 17:47:45 J2S transpiling (870/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/io/mime/HttpContentHandler.java build 28-Nov-2025 17:47:45 J2S transpiling (871/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/io/mime/JalviewMimeContentHandler.java build 28-Nov-2025 17:47:45 J2S transpiling (872/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/io/mime/MimeTypes.java build 28-Nov-2025 17:47:45 J2S transpiling (873/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/Annotate3D.java build 28-Nov-2025 17:47:45 J2S transpiling (874/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/Discoverer.java build 28-Nov-2025 17:47:45 J2S transpiling (875/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/JPredClient.java build 28-Nov-2025 17:47:45 J2S transpiling (876/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/JPredThread.java build 28-Nov-2025 17:47:45 J2S transpiling (877/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/JWS1Thread.java build 28-Nov-2025 17:47:45 J2S transpiling (878/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/MsaWSClient.java build 28-Nov-2025 17:47:45 J2S transpiling (879/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/MsaWSThread.java build 28-Nov-2025 17:47:45 J2S transpiling (880/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/SeqSearchWSClient.java build 28-Nov-2025 17:47:45 J2S transpiling (881/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/SeqSearchWSThread.java build 28-Nov-2025 17:47:46 J2S transpiling (882/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/WS1Client.java build 28-Nov-2025 17:47:46 J2S transpiling (883/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws1/WSJob.java build 28-Nov-2025 17:47:46 J2S transpiling (884/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/AAConClient.java build 28-Nov-2025 17:47:46 J2S transpiling (885/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/AADisorderClient.java build 28-Nov-2025 17:47:46 J2S transpiling (886/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/AWS2Thread.java build 28-Nov-2025 17:47:47 J2S transpiling (887/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/AbstractJabaCalcWorker.java build 28-Nov-2025 17:47:47 J2S transpiling (888/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/JWs2Job.java build 28-Nov-2025 17:47:47 J2S transpiling (889/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/JabaParamStore.java build 28-Nov-2025 17:47:47 J2S transpiling (890/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/JabaPreset.java build 28-Nov-2025 17:47:47 J2S transpiling (891/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/JabaWsServerQuery.java build 28-Nov-2025 17:47:47 J2S transpiling (892/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/JabawsCalcWorker.java build 28-Nov-2025 17:47:47 J2S transpiling (893/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java build 28-Nov-2025 17:47:47 J2S transpiling (894/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/Jws2Client.java build 28-Nov-2025 17:47:47 J2S transpiling (895/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/Jws2Discoverer.java build 28-Nov-2025 17:47:47 J2S transpiling (896/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/MsaWSClient.java build 28-Nov-2025 17:47:47 J2S transpiling (897/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/MsaWSThread.java build 28-Nov-2025 17:47:47 J2S transpiling (898/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/ParameterUtils.java build 28-Nov-2025 17:47:47 J2S transpiling (899/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/RNAalifoldClient.java build 28-Nov-2025 17:47:47 J2S transpiling (900/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/SequenceAnnotationWSClient.java build 28-Nov-2025 17:47:47 J2S transpiling (901/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/dm/AAConSettings.java build 28-Nov-2025 17:47:47 J2S transpiling (902/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/dm/JabaOption.java build 28-Nov-2025 17:47:47 J2S transpiling (903/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/dm/JabaParameter.java build 28-Nov-2025 17:47:47 J2S transpiling (904/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/dm/JabaValueConstrain.java build 28-Nov-2025 17:47:47 J2S transpiling (905/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/dm/JabaWsParamSet.java build 28-Nov-2025 17:47:47 J2S transpiling (906/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/jabaws2/Jws2Instance.java build 28-Nov-2025 17:47:47 J2S transpiling (907/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java build 28-Nov-2025 17:47:47 J2S transpiling (908/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/ArgumentI.java build 28-Nov-2025 17:47:47 J2S transpiling (909/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/AutoCalcSetting.java build 28-Nov-2025 17:47:47 J2S transpiling (910/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/InvalidArgumentException.java build 28-Nov-2025 17:47:47 J2S transpiling (911/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/OptionI.java build 28-Nov-2025 17:47:47 J2S transpiling (912/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/ParamDatastoreI.java build 28-Nov-2025 17:47:47 J2S transpiling (913/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/ParamManager.java build 28-Nov-2025 17:47:47 J2S transpiling (914/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/ParameterI.java build 28-Nov-2025 17:47:47 J2S transpiling (915/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/ValueConstrainI.java build 28-Nov-2025 17:47:47 J2S transpiling (916/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/WsParamSetI.java build 28-Nov-2025 17:47:47 J2S transpiling (917/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/simple/BooleanOption.java build 28-Nov-2025 17:47:47 J2S transpiling (918/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/simple/IntegerParameter.java build 28-Nov-2025 17:47:47 J2S transpiling (919/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/simple/Option.java build 28-Nov-2025 17:47:47 J2S transpiling (920/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/simple/Parameter.java build 28-Nov-2025 17:47:47 J2S transpiling (921/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/params/simple/StringChoiceParameter.java build 28-Nov-2025 17:47:47 J2S transpiling (922/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/AlignmentProcessor.java build 28-Nov-2025 17:47:47 J2S transpiling (923/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/HttpResultSet.java build 28-Nov-2025 17:47:47 J2S transpiling (924/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/InputType.java build 28-Nov-2025 17:47:47 J2S transpiling (925/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/NoValidInputDataException.java build 28-Nov-2025 17:47:47 J2S transpiling (926/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/RestClient.java build 28-Nov-2025 17:47:47 J2S transpiling (927/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/RestJob.java build 28-Nov-2025 17:47:47 J2S transpiling (928/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/RestJobThread.java build 28-Nov-2025 17:47:47 J2S transpiling (929/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/RestServiceDescription.java build 28-Nov-2025 17:47:47 J2S transpiling (930/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/params/Alignment.java build 28-Nov-2025 17:47:47 J2S transpiling (931/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/params/AnnotationFile.java build 28-Nov-2025 17:47:47 J2S transpiling (932/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/params/JobConstant.java build 28-Nov-2025 17:47:47 J2S transpiling (933/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/params/SeqGroupIndexVector.java build 28-Nov-2025 17:47:47 J2S transpiling (934/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/params/SeqIdVector.java build 28-Nov-2025 17:47:47 J2S transpiling (935/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/params/SeqVector.java build 28-Nov-2025 17:47:47 J2S transpiling (936/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/rest/params/Tree.java build 28-Nov-2025 17:47:47 J2S transpiling (937/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/seqfetcher/ASequenceFetcher.java build 28-Nov-2025 17:47:47 J2S transpiling (938/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/seqfetcher/DbSourceProxy.java build 28-Nov-2025 17:47:47 J2S transpiling (939/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java build 28-Nov-2025 17:47:47 J2S transpiling (940/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/sifts/MappingOutputPojo.java build 28-Nov-2025 17:47:47 J2S transpiling (941/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/sifts/SiftsClient.java build 28-Nov-2025 17:47:47 J2S transpiling (942/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/sifts/SiftsException.java build 28-Nov-2025 17:47:47 J2S transpiling (943/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/sifts/SiftsSettings.java build 28-Nov-2025 17:47:47 J2S transpiling (944/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/uimodel/AlignAnalysisUIText.java build 28-Nov-2025 17:47:47 J2S transpiling (945/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/ws/utils/UrlDownloadClient.java build 28-Nov-2025 17:47:47 J2S transpiling (946/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/embl/EntrySetType.java build 28-Nov-2025 17:47:47 J2S transpiling (947/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/embl/EntryType.java build 28-Nov-2025 17:47:47 J2S transpiling (948/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/embl/ObjectFactory.java build 28-Nov-2025 17:47:47 J2S transpiling (949/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/embl/ROOT.java build 28-Nov-2025 17:47:47 J2S transpiling (950/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/embl/XrefType.java build 28-Nov-2025 17:47:47 J2S transpiling (951/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/AlcodonFrame.java build 28-Nov-2025 17:47:47 J2S transpiling (952/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/Annotation.java build 28-Nov-2025 17:47:47 J2S transpiling (953/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/AnnotationColourScheme.java build 28-Nov-2025 17:47:47 J2S transpiling (954/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/AnnotationElement.java build 28-Nov-2025 17:47:47 J2S transpiling (955/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/DoubleMatrix.java build 28-Nov-2025 17:47:47 J2S transpiling (956/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/DoubleVector.java build 28-Nov-2025 17:47:47 J2S transpiling (957/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/Feature.java build 28-Nov-2025 17:47:47 J2S transpiling (958/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/FeatureMatcher.java build 28-Nov-2025 17:47:47 J2S transpiling (959/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/FeatureMatcherSet.java build 28-Nov-2025 17:47:47 J2S transpiling (960/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/FilterBy.java build 28-Nov-2025 17:47:47 J2S transpiling (961/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/JalviewModel.java build 28-Nov-2025 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28-Nov-2025 17:47:47 J2S transpiling (974/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/SequenceType.java build 28-Nov-2025 17:47:47 J2S transpiling (975/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/ThresholdType.java build 28-Nov-2025 17:47:47 J2S transpiling (976/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/VAMSAS.java build 28-Nov-2025 17:47:47 J2S transpiling (977/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/WebServiceParameterSet.java build 28-Nov-2025 17:47:47 J2S transpiling (978/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/jalview/package-info.java build 28-Nov-2025 17:47:47 J2S transpiling (979/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/sifts/Alignment.java build 28-Nov-2025 17:47:47 J2S transpiling (980/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/sifts/EntityType.java build 28-Nov-2025 17:47:47 J2S transpiling (981/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/sifts/Entry.java build 28-Nov-2025 17:47:47 J2S transpiling (982/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/sifts/ObjectFactory.java build 28-Nov-2025 17:47:47 J2S transpiling (983/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/sifts/package-info.java build 28-Nov-2025 17:47:47 J2S transpiling (984/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/CitationType.java build 28-Nov-2025 17:47:47 J2S transpiling (985/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/CofactorType.java build 28-Nov-2025 17:47:47 J2S transpiling (986/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/CommentType.java build 28-Nov-2025 17:47:47 J2S transpiling (987/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/ConsortiumType.java build 28-Nov-2025 17:47:47 J2S transpiling (988/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/DbReferenceType.java build 28-Nov-2025 17:47:47 J2S transpiling (989/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/Entry.java build 28-Nov-2025 17:47:47 J2S transpiling (990/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/EventType.java build 28-Nov-2025 17:47:47 J2S transpiling 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/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/PhysiologicalReactionType.java build 28-Nov-2025 17:47:47 J2S transpiling (1009/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/PositionType.java build 28-Nov-2025 17:47:47 J2S transpiling (1010/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/PropertyType.java build 28-Nov-2025 17:47:47 J2S transpiling (1011/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/ProteinExistenceType.java build 28-Nov-2025 17:47:47 J2S transpiling (1012/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/ProteinType.java build 28-Nov-2025 17:47:47 J2S transpiling (1013/1108) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/xml/binding/uniprot/ReactionType.java build 28-Nov-2025 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17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/DBRefUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/DnaUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/FileUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/FormatTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/HttpUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ImageMakerTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/JSONUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/LaunchUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/Log4jTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/MapListTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/MappingUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/MathUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/MessageManagerTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ParseHtmlBodyAndLinksTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/PlatformTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/QuickSortTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/SetUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ShiftListTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/SparseCountTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/StringUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/UrlLinkTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/dialogrunner/DialogRunnerTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/imagemaker/BitmapImageSizeTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/matcher/ConditionTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/matcher/MatcherTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/viewmodel/OverviewDimensionsHideHiddenTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/viewmodel/OverviewDimensionsShowHiddenTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/viewmodel/ViewportRangesTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/viewmodel/styles/ViewStyleTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/workers/AlignCalcManagerTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/PDBSequenceFetcherTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/SequenceFetcherTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/EBIAlphaFoldTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/EmblXmlSourceTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/PfamFullTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/PfamSeedTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/RemoteFormatTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/RfamFullTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/RfamSeedTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/UniprotTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/XfamFetcherTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/ebi/EBIFetchClientTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/gui/Jws2ParamView.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jabaws/DisorderAnnotExportImport.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jabaws/MinJabawsClientTests.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jabaws/RNAStructExportImport.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jws2/ParameterUtilsTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/rest/RestClientTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/rest/ShmmrRSBSService.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/seqfetcher/DbRefFetcherTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/sifts/SiftsClientTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/utils/UrlDownloadClientTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/junit/extensions/PA.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/junit/extensions/PrivilegedAccessor.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/AtomTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/BondTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/PDBChainTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/PDBfileTest.java build 28-Nov-2025 17:47:49 J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/ResidueTest.java build 28-Nov-2025 17:47:49 J2S processed 1108 .java files, created 1139 .js files and 7 .html files, copied 6 resources build 28-Nov-2025 17:47:49 J2S buildFinished 1108 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 build 28-Nov-2025 17:47:49 J2S buildFinished nerror = 0 Fri Nov 28 17:47:49 GMT 2025 build 28-Nov-2025 17:47:49 (Found 4 errors + 2870 warnings) Build done build 28-Nov-2025 17:47:49 Invoking 'Gradle Project Builder' on '/jalview'. build 28-Nov-2025 17:47:51 :jalviewjsTranspile (Thread[Execution worker for ':',5,main]) completed. Took 57.129 secs. build 28-Nov-2025 17:47:51 :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:51 build 28-Nov-2025 17:47:51 > Task :jalviewjsCopyTransferSiteJs build 28-Nov-2025 17:47:51 Caching disabled for task ':jalviewjsCopyTransferSiteJs' because: build 28-Nov-2025 17:47:51 Build cache is disabled build 28-Nov-2025 17:47:51 Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because: build 28-Nov-2025 17:47:51 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site has been removed. build 28-Nov-2025 17:47:51 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed. build 28-Nov-2025 17:47:51 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_GetdownLauncherUpdate.html has been removed. build 28-Nov-2025 17:47:51 :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) completed. Took 0.459 secs. build 28-Nov-2025 17:47:51 :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:52 build 28-Nov-2025 17:47:52 > Task :jalviewjsTransferUnzipLib build 28-Nov-2025 17:47:52 Caching disabled for task ':jalviewjsTransferUnzipLib' because: build 28-Nov-2025 17:47:52 Build cache is disabled build 28-Nov-2025 17:47:52 Task ':jalviewjsTransferUnzipLib' is not up-to-date because: build 28-Nov-2025 17:47:52 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_lib has been removed. build 28-Nov-2025 17:47:52 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_AlignmentDemo.html has been removed. build 28-Nov-2025 17:47:52 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_fragseq_FragSeqGUI.html has been removed. build 28-Nov-2025 17:47:52 :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) completed. Took 0.823 secs. build 28-Nov-2025 17:47:52 :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:53 build 28-Nov-2025 17:47:53 > Task :jalviewjsTransferUnzipSwingJs build 28-Nov-2025 17:47:53 Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because: build 28-Nov-2025 17:47:53 Build cache is disabled build 28-Nov-2025 17:47:53 Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because: build 28-Nov-2025 17:47:53 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_swingjs has been removed. build 28-Nov-2025 17:47:53 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_swingjs/___j2sflags.htm has been removed. build 28-Nov-2025 17:47:53 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_swingjs/debug.log has been removed. build 28-Nov-2025 17:47:53 :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) completed. Took 1.096 secs. build 28-Nov-2025 17:47:53 :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:53 build 28-Nov-2025 17:47:53 > Task :jalviewjsTransferUnzipAllLibs build 28-Nov-2025 17:47:53 Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions. build 28-Nov-2025 17:47:53 :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:47:53 :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:54 build 28-Nov-2025 17:47:54 > Task :jalviewjsSyncAllLibs build 28-Nov-2025 17:47:54 Caching disabled for task ':jalviewjsSyncAllLibs' because: build 28-Nov-2025 17:47:54 Build cache is disabled build 28-Nov-2025 17:47:54 Task ':jalviewjsSyncAllLibs' is not up-to-date because: build 28-Nov-2025 17:47:54 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CDL.js has changed. build 28-Nov-2025 17:47:54 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/Cookie.js has changed. build 28-Nov-2025 17:47:54 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CookieList.js has changed. build 28-Nov-2025 17:47:54 :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 1.529 secs. build 28-Nov-2025 17:47:54 :copyResources (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:54 build 28-Nov-2025 17:47:54 > Task :copyResources build 28-Nov-2025 17:47:54 Caching disabled for task ':copyResources' because: build 28-Nov-2025 17:47:54 Build cache is disabled build 28-Nov-2025 17:47:54 Task ':copyResources' is not up-to-date because: build 28-Nov-2025 17:47:54 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build has been removed. build 28-Nov-2025 17:47:54 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build/AmbiguityCodes.dat has been removed. build 28-Nov-2025 17:47:54 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build/authors.props has been removed. build 28-Nov-2025 17:47:54 :copyResources (Thread[Execution worker for ':',5,main]) completed. Took 0.107 secs. build 28-Nov-2025 17:47:54 :createBuildProperties (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:54 build 28-Nov-2025 17:47:54 > Task :createBuildProperties build 28-Nov-2025 17:47:54 Caching disabled for task ':createBuildProperties' because: build 28-Nov-2025 17:47:54 Build cache is disabled build 28-Nov-2025 17:47:54 Task ':createBuildProperties' is not up-to-date because: build 28-Nov-2025 17:47:54 Value of input property 'comment' has changed for task ':createBuildProperties' build 28-Nov-2025 17:47:54 Value of input property 'properties' has changed for task ':createBuildProperties' build 28-Nov-2025 17:47:54 :createBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.011 secs. build 28-Nov-2025 17:47:54 :jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:54 build 28-Nov-2025 17:47:54 > Task :jalviewjsSyncBuildProperties build 28-Nov-2025 17:47:54 Caching disabled for task ':jalviewjsSyncBuildProperties' because: build 28-Nov-2025 17:47:54 Build cache is disabled build 28-Nov-2025 17:47:54 Task ':jalviewjsSyncBuildProperties' is not up-to-date because: build 28-Nov-2025 17:47:54 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed. build 28-Nov-2025 17:47:54 :jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.141 secs. build 28-Nov-2025 17:47:54 :jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:47:57 build 28-Nov-2025 17:47:57 > Task :jalviewjsBuildAllCores build 28-Nov-2025 17:47:57 Execution optimizations have been disabled for task ':jalviewjsBuildAllCores' to ensure correctness due to the following reasons: build 28-Nov-2025 17:47:57 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_lib/swingjs/j2s'. Reason: Task ':jalviewjsBuildAllCores' uses this output of task ':jalviewjsTransferUnzipLib' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 28-Nov-2025 17:47:57 Invalidating VFS because task ':jalviewjsBuildAllCores' failed validation build 28-Nov-2025 17:47:57 Caching disabled for task ':jalviewjsBuildAllCores' because: build 28-Nov-2025 17:47:57 Build cache is disabled build 28-Nov-2025 17:47:57 Task ':jalviewjsBuildAllCores' is not up-to-date because: build 28-Nov-2025 17:47:57 Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. build 28-Nov-2025 17:47:57 Creating core for jalview... build 28-Nov-2025 17:47:57 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js build 28-Nov-2025 17:47:57 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js build 28-Nov-2025 17:47:57 build 28-Nov-2025 17:47:57 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js' build 28-Nov-2025 17:47:57 build 28-Nov-2025 17:47:57 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js build 28-Nov-2025 17:47:57 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 28-Nov-2025 17:48:09 -- build 28-Nov-2025 17:48:09 Creating core for jvexamplefile... build 28-Nov-2025 17:48:09 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js build 28-Nov-2025 17:48:09 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js build 28-Nov-2025 17:48:09 build 28-Nov-2025 17:48:09 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js' build 28-Nov-2025 17:48:09 build 28-Nov-2025 17:48:09 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js build 28-Nov-2025 17:48:09 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 28-Nov-2025 17:48:12 -- build 28-Nov-2025 17:48:12 Creating core for _jalview... build 28-Nov-2025 17:48:12 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js build 28-Nov-2025 17:48:12 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js build 28-Nov-2025 17:48:12 build 28-Nov-2025 17:48:12 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js' build 28-Nov-2025 17:48:12 build 28-Nov-2025 17:48:12 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js build 28-Nov-2025 17:48:12 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 28-Nov-2025 17:48:14 -- build 28-Nov-2025 17:48:14 Creating core for _stevesoft... build 28-Nov-2025 17:48:14 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js build 28-Nov-2025 17:48:14 Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js build 28-Nov-2025 17:48:14 build 28-Nov-2025 17:48:14 Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js' build 28-Nov-2025 17:48:14 build 28-Nov-2025 17:48:14 Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js build 28-Nov-2025 17:48:14 Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' build 28-Nov-2025 17:48:19 -- build 28-Nov-2025 17:48:19 :jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) completed. Took 24.227 secs. build 28-Nov-2025 17:48:19 :jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:19 build 28-Nov-2025 17:48:19 > Task :jalviewjsPublishCoreTemplates build 28-Nov-2025 17:48:19 Caching disabled for task ':jalviewjsPublishCoreTemplates' because: build 28-Nov-2025 17:48:19 Build cache is disabled build 28-Nov-2025 17:48:19 Task ':jalviewjsPublishCoreTemplates' is not up-to-date because: build 28-Nov-2025 17:48:19 Output property '$1$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jalview.html has been removed. build 28-Nov-2025 17:48:19 Output property '$1$2' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jvexamplefile.html has been removed. build 28-Nov-2025 17:48:19 Output property '$1$3' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_core/JalviewJS__jalview.html has been removed. build 28-Nov-2025 17:48:19 :jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) completed. Took 0.026 secs. build 28-Nov-2025 17:48:19 :jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:19 build 28-Nov-2025 17:48:19 > Task :jalviewjsSyncCore build 28-Nov-2025 17:48:19 Caching disabled for task ':jalviewjsSyncCore' because: build 28-Nov-2025 17:48:19 Build cache is disabled build 28-Nov-2025 17:48:19 Task ':jalviewjsSyncCore' is not up-to-date because: build 28-Nov-2025 17:48:19 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/JalviewJS__jalview.html has been removed. build 28-Nov-2025 17:48:19 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/JalviewJS__stevesoft.html has been removed. build 28-Nov-2025 17:48:19 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/JalviewJS_jalview.html has been removed. build 28-Nov-2025 17:48:19 :jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) completed. Took 0.237 secs. build 28-Nov-2025 17:48:19 :copyChannelResources (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:19 build 28-Nov-2025 17:48:19 > Task :copyChannelResources build 28-Nov-2025 17:48:19 Execution optimizations have been disabled for task ':copyChannelResources' to ensure correctness due to the following reasons: build 28-Nov-2025 17:48:19 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 28-Nov-2025 17:48:19 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build'. Reason: Task ':jalviewjsSyncBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 28-Nov-2025 17:48:19 Invalidating VFS because task ':copyChannelResources' failed validation build 28-Nov-2025 17:48:19 Caching disabled for task ':copyChannelResources' because: build 28-Nov-2025 17:48:19 Build cache is disabled build 28-Nov-2025 17:48:19 Task ':copyChannelResources' is not up-to-date because: build 28-Nov-2025 17:48:19 Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. build 28-Nov-2025 17:48:19 :copyChannelResources (Thread[Execution worker for ':',5,main]) completed. Took 0.034 secs. build 28-Nov-2025 17:48:19 :buildResources (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:19 build 28-Nov-2025 17:48:19 > Task :buildResources build 28-Nov-2025 17:48:19 Skipping task ':buildResources' as it has no actions. build 28-Nov-2025 17:48:19 :buildResources (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:48:19 :jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:19 build 28-Nov-2025 17:48:19 > Task :jalviewjsSyncResources build 28-Nov-2025 17:48:19 Caching disabled for task ':jalviewjsSyncResources' because: build 28-Nov-2025 17:48:19 Build cache is disabled build 28-Nov-2025 17:48:19 Task ':jalviewjsSyncResources' is not up-to-date because: build 28-Nov-2025 17:48:19 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has changed. build 28-Nov-2025 17:48:19 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/AmbiguityCodes.dat has been removed. build 28-Nov-2025 17:48:19 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/authors.props has been removed. build 28-Nov-2025 17:48:19 :jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) completed. Took 0.193 secs. build 28-Nov-2025 17:48:19 :jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:20 build 28-Nov-2025 17:48:20 > Task :jalviewjsSyncSiteResources build 28-Nov-2025 17:48:20 Caching disabled for task ':jalviewjsSyncSiteResources' because: build 28-Nov-2025 17:48:20 Build cache is disabled build 28-Nov-2025 17:48:20 Task ':jalviewjsSyncSiteResources' is not up-to-date because: build 28-Nov-2025 17:48:20 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_JalviewJS2.html has changed. build 28-Nov-2025 17:48:20 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/applets-nocore.html has been removed. build 28-Nov-2025 17:48:20 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/applets.html has been removed. build 28-Nov-2025 17:48:20 :jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) completed. Took 0.215 secs. build 28-Nov-2025 17:48:20 :jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:20 build 28-Nov-2025 17:48:20 > Task :jalviewjsPrepareSite build 28-Nov-2025 17:48:20 Skipping task ':jalviewjsPrepareSite' as it has no actions. build 28-Nov-2025 17:48:20 :jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:48:20 :jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:20 build 28-Nov-2025 17:48:20 > Task :jalviewjsBuildSite build 28-Nov-2025 17:48:20 Skipping task ':jalviewjsBuildSite' as it has no actions. build 28-Nov-2025 17:48:20 :jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:48:20 :cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:20 build 28-Nov-2025 17:48:20 > Task :cleanJalviewjsChromiumUserDir UP-TO-DATE build 28-Nov-2025 17:48:20 Caching disabled for task ':cleanJalviewjsChromiumUserDir' because: build 28-Nov-2025 17:48:20 Build cache is disabled build 28-Nov-2025 17:48:20 Skipping task ':cleanJalviewjsChromiumUserDir' as it is up-to-date. build 28-Nov-2025 17:48:20 :cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs. build 28-Nov-2025 17:48:20 :jalviewjsChromiumProfile (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:20 build 28-Nov-2025 17:48:20 > Task :jalviewjsChromiumProfile build 28-Nov-2025 17:48:20 Caching disabled for task ':jalviewjsChromiumProfile' because: build 28-Nov-2025 17:48:20 Build cache is disabled build 28-Nov-2025 17:48:20 Task ':jalviewjsChromiumProfile' is not up-to-date because: build 28-Nov-2025 17:48:20 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/chromium/First Run has been removed. build 28-Nov-2025 17:48:20 :jalviewjsChromiumProfile (Thread[Execution worker for ':',5,main]) completed. Took 0.004 secs. build 28-Nov-2025 17:48:20 :jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:20 build 28-Nov-2025 17:48:20 > Task :jalviewjsCopyStderrLaunchFile build 28-Nov-2025 17:48:20 Caching disabled for task ':jalviewjsCopyStderrLaunchFile' because: build 28-Nov-2025 17:48:20 Build cache is disabled build 28-Nov-2025 17:48:20 Task ':jalviewjsCopyStderrLaunchFile' is not up-to-date because: build 28-Nov-2025 17:48:20 Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed. build 28-Nov-2025 17:48:20 Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed. build 28-Nov-2025 17:48:20 :jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':',5,main]) completed. Took 0.135 secs. build 28-Nov-2025 17:48:20 :jalviewjsLaunchTest (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:20 COMMAND: '/home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html' build 28-Nov-2025 17:48:20 Starting process 'command '/home/bamboo/buildtools/chromium/chrome''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html build 28-Nov-2025 17:48:20 Successfully started process 'command '/home/bamboo/buildtools/chromium/chrome'' error 28-Nov-2025 17:48:20 [25091:25091:1128/174820.832662:WARNING:chrome_main_delegate.cc(593)] This is Thorium version: 114.0.5735.134 (not a warning) error 28-Nov-2025 17:48:21 [25091:25091:1128/174821.130350:WARNING:chrome_browser_cloud_management_controller.cc(87)] Could not create policy manager as CBCM is not enabled. error 28-Nov-2025 17:48:21 [25091:25106:1128/174821.510639:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 28-Nov-2025 17:48:21 [25091:25106:1128/174821.517876:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 28-Nov-2025 17:48:21 [25091:25106:1128/174821.517900:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 28-Nov-2025 17:48:21 [25091:25106:1128/174821.517912:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") build 28-Nov-2025 17:48:22 build 28-Nov-2025 17:48:22 > Task :jalviewjsLaunchTest build 28-Nov-2025 17:48:22 Caching disabled for task ':jalviewjsLaunchTest' because: build 28-Nov-2025 17:48:22 Build cache is disabled build 28-Nov-2025 17:48:22 Task ':jalviewjsLaunchTest' is not up-to-date because: build 28-Nov-2025 17:48:22 Task has not declared any outputs despite executing actions. build 28-Nov-2025 17:48:22 error 28-Nov-2025 17:48:22 [25091:25091:1128/174821.625487:ERROR:chrome_browser_cloud_management_controller.cc(162)] Cloud management controller initialization aborted as CBCM is not enabled. error 28-Nov-2025 17:48:22 [25091:25106:1128/174821.852273:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 28-Nov-2025 17:48:22 [25091:25106:1128/174821.852294:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix") error 28-Nov-2025 17:48:22 [25117:25117:1128/174821.944089:ERROR:vaapi_wrapper.cc(3273)] Failed to initialize VAAPI libs error 28-Nov-2025 17:48:22 [25117:25117:1128/174821.965779:WARNING:sandbox_linux.cc(393)] InitializeSandbox() called with multiple threads in process gpu-process. error 28-Nov-2025 17:48:22 [25119:25146:1128/174822.121561:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration error 28-Nov-2025 17:48:22 [25119:25146:1128/174822.121815:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration error 28-Nov-2025 17:48:22 [25091:25103:1128/174822.142494:WARNING:external_pref_loader.cc(294)] You are using an old-style extension deployment method (external_extensions.json), which will soon be deprecated. (see http://developer.chrome.com/extensions/external_extensions.html) error 28-Nov-2025 17:48:22 [25091:25091:1128/174822.518334:WARNING:bluez_dbus_manager.cc(247)] Floss manager not present, cannot set Floss enable/disable. error 28-Nov-2025 17:48:22 [25091:25091:1128/174822.518440:ERROR:object_proxy.cc(590)] Failed to call method: org.freedesktop.portal.Settings.Read: object_path= /org/freedesktop/portal/desktop: unknown error type: error 28-Nov-2025 17:48:23 [25091:25091:1128/174822.954989:INFO:CONSOLE(13141)] "J2SApplet load testApplet loadClazz...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141) error 28-Nov-2025 17:48:23 [25091:25091:1128/174822.955009:INFO:CONSOLE(13141)] "J2SApplet load testApplet start applet...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.014040:INFO:CONSOLE(13084)] "j2sApplet exec testApplet loadClazz null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.032295:INFO:CONSOLE(16968)] "j2sApplet exec testApplet start applet null error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.032316:INFO:CONSOLE(13084)] "j2sApplet exec testApplet start applet null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.033707:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Class.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.043744:INFO:CONSOLE(26)] "transpiler was unknown now 3.3.1-v1 for java.lang.Class error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.043765:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Jalview.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.046803:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/groovy/JalviewObjectI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.049106:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/Platform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.053038:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Console.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.056132:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.jalview.org error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.056153:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.jalview.org error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.056166:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.compbio.dundee.ac.uk error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.056180:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.compbio.dundee.ac.uk error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.056192:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Hashtable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.061985:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Dictionary.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.065165:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Map.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.067645:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.073126:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.076634:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.078766:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFrameViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.080852:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSApp.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.082625:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSInterface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.084138:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletStub.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.085741:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.087358:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URL.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.089756:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/Interface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.091391:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.091567:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.093543:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.096108:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.097757:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractCollection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.099296:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.100962:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Iterable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.102554:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Set.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.105343:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Enumeration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.112105:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Iterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.116576:INFO:CONSOLE(16968)] "JSApp get parameter: language = null error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.116598:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSUtil.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.119257:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/JSUtilI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.121132:INFO:CONSOLE(16968)] "swingjs.JSUtil initialized;debug=false error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.121200:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Locale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.124090:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/BaseLocale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.128529:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/StringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.130226:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AbstractStringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.132530:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LocaleUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.135861:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Enum.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.138149:INFO:CONSOLE(16968)] "JSApp get parameter: name = testApplet error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.138168:INFO:CONSOLE(16968)] "JSApp get parameter: syncId = 461023473969856 error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.138179:INFO:CONSOLE(16968)] "JSApp initialized error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.138762:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Dimension.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.147326:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Dimension2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.148921:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Lst.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.151352:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ArrayList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.154649:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.156395:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/List.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.161573:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/RandomAccess.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.163304:INFO:CONSOLE(16968)] "JSAppletViewer initializing2 error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.164376:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Insets.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.166370:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.170238:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.172340:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Thread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.175343:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/JSThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.177149:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.179833:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.181644:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Toolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.184472:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/ComponentFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.186943:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.190842:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.192498:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.194479:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PostEventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.196132:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.198440:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.200747:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/ChangeListenerMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.202229:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.204272:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.206722:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentThreadAppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.208514:INFO:CONSOLE(16968)] "JSToolkit initialized error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.208528:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.210794:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.213007:INFO:CONSOLE(16968)] "JSGraphicsConfiguration initialized error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.213021:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.214666:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.214681:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.216021:INFO:CONSOLE(16968)] "JSGraphicsEnvironment initialized error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.216170:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSScreenDevice error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.216265:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSScreenDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.219744:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.221487:INFO:CONSOLE(16968)] "JSScreenDevice initialized error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.226859:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=0 status=0 error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.226874:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingUtilities.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.229671:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.231302:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentKeyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.232691:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InvocationEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.234269:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.235904:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.237342:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ActiveEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.240381:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AWTAutoShutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.242569:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.244457:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/IdentityHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.247650:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventDispatchThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.250047:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.252138:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventFilter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.253983:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Arrays.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.260104:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.261959:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=1 error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.261973:INFO:CONSOLE(16968)] "JSAppletViewer runloader error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.262495:INFO:CONSOLE(16968)] "JSApp get parameter: main = jalview.bin.Jalview error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.262509:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSDummyApplet error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.262517:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSDummyApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.264873:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.267456:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/JSApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.270047:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.272031:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Container.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.274825:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.277218:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Component.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.280864:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageObserver.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.283026:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RootPaneContainer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.288670:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FlowLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.291010:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.293998:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ComponentOrientation.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.295622:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JRootPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.297510:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.302880:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/RequestFocusController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.304525:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/EventListenerList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.306433:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.308690:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.311311:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.311327:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/HTML5LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.313611:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.315459:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/FontUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.317347:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Font.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.319422:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/UIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.322576:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIDefaults.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.325477:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Color.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.328070:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Paint.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.329964:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Transparency.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.331887:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ColorUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.335335:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/SwingLazyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.337782:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/InsetsUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.340354:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/BorderUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.342396:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/Border.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.344558:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/EtchedBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.346464:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/AbstractBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.348256:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/DimensionUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.350548:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/EmptyBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.355925:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RepaintManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.362098:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingPaintEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.364308:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PaintEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.366673:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPanelUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.368096:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLightweightUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.370356:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSComponentUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.377324:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.379798:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/ComponentPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.382240:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSEventHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.385119:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.386872:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/peer/DropTargetPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.389453:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/LightweightPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.390636:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/ContainerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.393963:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.396216:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.399682:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.401214:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventPostProcessor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.402527:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTKeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.407350:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.410891:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSequentialList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.412878:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Deque.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.424168:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.427041:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultKeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.431435:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.433909:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.436004:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.438359:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collections.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.447403:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFocusPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.449656:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/KeyboardFocusManagerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.451811:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/DOMNode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.456563:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Cursor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.459992:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JLayeredPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.463608:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLayeredPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.466420:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/BorderLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.468380:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager2.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.472230:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ArrayTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.475156:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/FocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.477058:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LayoutFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.482887:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SortingFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.489921:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InternalFrameFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.491654:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.493206:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingDefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.495205:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LayoutComparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.497743:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Comparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.500134:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRootPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.502065:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSAppletUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.506775:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LightweightDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.509121:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AWTEventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.512002:INFO:CONSOLE(16968)] "testApplet loaded error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.512016:INFO:CONSOLE(298)] "testApplet loaded", source: swingjs/j2s/swingjs/JSUtil.js (298) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.519788:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=76 error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.519803:INFO:CONSOLE(16968)] "testApplet running jalview.bin.Jalview error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.519812:INFO:CONSOLE(298)] "testApplet running jalview.bin.Jalview", source: swingjs/j2s/swingjs/JSUtil.js (298) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.520230:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/PT.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.522804:INFO:CONSOLE(16968)] "Running main(args) in class jalview.bin.Jalview error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.529641:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/BootstrapArgs.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.534212:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Objects.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.539656:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/Arg.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.543198:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ChannelProperties.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.545383:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Properties.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.547663:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/File.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.549882:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/FileSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.551756:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.554485:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.557189:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/channel.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.566318:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/BufferedInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.567958:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/FilterInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.569683:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/InputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.571550:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/Closeable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.572886:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AutoCloseable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.574733:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/ByteArrayInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.576043:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/HttpUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.577914:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.579839:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/HttpURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.581378:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.582970:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/ContentHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.584941:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Rdr.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.586730:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/api/GenericLineReader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.591334:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AU.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.594599:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-16.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.599197:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ImageIcon.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.600820:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Icon.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.602509:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/SB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.605790:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSImagekit error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.605806:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSImagekit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.607884:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageConsumer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.610931:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.616024:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/BufferedImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.621389:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Image.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.623040:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/RenderedImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.624792:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.627183:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DirectColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.629002:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/PackedColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.630724:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/color/ColorSpace.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.633070:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/Raster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.634842:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DataBufferInt.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.636347:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DataBuffer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.646580:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/DataStealer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.648532:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/SunWritableRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.650843:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/WritableRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.653065:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/java2d/StateTrackable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.655329:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/java2d/StateTrackableDelegate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.657560:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Point.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.659225:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Point2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.661232:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/SinglePixelPackedSampleModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.663205:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/SampleModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.665679:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/IntegerInterleavedRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.668112:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/IntegerComponentRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.670121:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Rectangle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.672201:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Rectangle2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.674238:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/RectangularShape.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.676098:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Shape.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.681655:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Base64.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.685808:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.688333:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-48.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.694690:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-64.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.703321:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-128.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.715153:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-256.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.720926:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-512.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.737247:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/StructureViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.739690:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.741623:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/RegularEnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.743365:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Spliterators.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.746242:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Spliterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.749020:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/StreamSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.750456:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/StreamOpFlag.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.752238:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EnumMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.755946:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/ReferencePipeline.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.758124:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/AbstractPipeline.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.760197:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/PipelineHelper.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.765989:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/BaseStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.767709:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/Stream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.769993:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/Function.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.772161:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/StreamShape.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.776027:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/Collectors.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.779239:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/Collector.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.782598:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/Supplier.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.787198:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/StringJoiner.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.788527:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/BiConsumer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.790751:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/BinaryOperator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.792629:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/BiFunction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.794710:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/ReduceOps.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.797241:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/TerminalOp.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.799274:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/TerminalSink.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.801204:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/Sink.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.803250:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/function/Consumer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.807251:INFO:CONSOLE(26)] "launcher.appdir property not found error 28-Nov-2025 17:48:23 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.807268:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Cache.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:23 [25091:25091:1128/174823.809903:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/datamodel/PDBEntry.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.816834:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureImportSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.818032:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.819862:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/Format.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.821917:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.823160:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleServiceProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.825186:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.828855:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/JRELocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.830853:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/ResourceBundleBasedAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.832499:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.834919:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.837357:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/SPILocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.840306:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AuxLocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.843815:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleDataMetaInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.845893:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/StringTokenizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.848634:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.851597:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/AccessController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.854655:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/DateFormatProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.856783:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AvailableLanguageTags.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.859692:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LanguageTag.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.863260:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/SimpleDateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.889162:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/AttributedCharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.901791:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/CharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.912396:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimeZone.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.978384:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174823.989692:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfoFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.012908:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/calendar/tzdb.dat", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.023617:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.046344:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInput.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.068960:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Calendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.089338:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/spi/CalendarProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.109428:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.121556:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/GregorianCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.136118:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.148428:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of sun.util.calendar.Gregorian error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.148446:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/Gregorian.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.161207:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/BaseCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.173378:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/AbstractCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.185467:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataUtility.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.195953:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CalendarDataProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.206913:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleServiceProviderPool.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.216832:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/BreakIteratorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.226718:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/CollatorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.229071:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.231201:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DecimalFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.233479:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/NumberFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.235179:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CurrencyNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.236939:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.238729:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/TimeZoneNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.241282:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.243021:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedExceptionAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.244829:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ServiceLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.248476:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleResources.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.250649:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ref/ReferenceQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.253118:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/LocaleData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.256067:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.259898:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.260366:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/CalendarData.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.262657:INFO:CONSOLE(16968)] "JSUtil caching 1780 bytes for swingjs/j2s/sun/util/resources/CalendarData.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.262674:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of java.util.PropertyResourceBundle error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.262683:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/PropertyResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.267261:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.267278:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.269307:INFO:CONSOLE(16968)] "JSUtil caching 1943 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.270393:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.270409:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.272293:INFO:CONSOLE(16968)] "JSUtil caching 1786 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.272806:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.273243:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.273941:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.273971:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarDate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.277851:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.279515:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.281884:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/FormatData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.283908:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/ParallelListResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.286422:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.290126:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en_GB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.294239:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/NumberFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.296809:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.299284:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.302153:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/FieldPosition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.304189:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DigitList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.306839:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/math/RoundingMode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.312680:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/LaunchUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.315383:INFO:CONSOLE(16968)] "Jalview non-release Version: TEST error 28-Nov-2025 17:48:24 Jalview non-release Installation: unknown error 28-Nov-2025 17:48:24 Channel: default error 28-Nov-2025 17:48:24 Build Date: unknown error 28-Nov-2025 17:48:24 Preferences file: unknown error 28-Nov-2025 17:48:24 Log file: unknown error 28-Nov-2025 17:48:24 Java version: 1.8 error 28-Nov-2025 17:48:24 Java home: https://. error 28-Nov-2025 17:48:24 Java launch class: unknown error 28-Nov-2025 17:48:24 Java platform: Mozilla/5.0 5.0 (X11) (Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/114.0.0.0 Safari/537.36) error 28-Nov-2025 17:48:24 Java LAF: SwingJS (swingjs.plaf.HTML5LookAndFeel) error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.315400:INFO:CONSOLE(26)] "Using default properties file '/TEMP/swingjs/.jalview_nonrelease_properties' error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.315411:INFO:CONSOLE(26)] "Falling back to properties file '/TEMP/swingjs/.jalview_properties' error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.315421:INFO:CONSOLE(26)] "Could not load bootstrap preferences file '/TEMP/swingjs/.jalview_properties' error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.315775:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.318731:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.320908:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/BuildDetails.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.322229:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/BuildDetailsI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.324026:INFO:CONSOLE(16968)] "Jalview non-release version: TEST (Source git-commit:6f2c311824 [bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest]) error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.324042:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/ArgsParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.326772:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Vector.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.329744:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.331974:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLogger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.333790:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerLog4j.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.335726:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Runtime.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.337685:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ApplicationShutdownHooks.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.340133:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Shutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.342644:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.345312:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.356484:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.359129:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/sifts/SiftsSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.361127:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/urls/IdOrgSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.364700:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/PIRFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.366225:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.368383:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileParse.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.371194:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileReaderI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.373243:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileWriterI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.375726:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/ArgParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.379762:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/JumboEnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.385737:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ArgParserUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.388363:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormats.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.389892:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.398679:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormatI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.405528:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/UserAgent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.407349:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Formatter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.410708:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Pattern.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.417678:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Matcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.419640:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/MatchResult.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.428209:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/Desktop.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.440343:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/jbgui/GDesktop.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.448435:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JFrame.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.472539:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSFrame.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.496352:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Window.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.545519:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/WindowConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.572368:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTargetListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.577543:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/ClipboardOwner.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.584589:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/IProgressIndicator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.598591:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/StructureSelectionManagerProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.602749:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/SplashScreen.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.605009:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/HyperlinkListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.607031:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/barton_group-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.610455:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/UoD_banner-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.617901:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphics2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.621004:INFO:CONSOLE(16968)] "JSGraphics2D pixelRatio is 1.0 error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.621018:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/RenderingHints.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.624706:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/AffineTransform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.627879:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/BasicStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.629297:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Stroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.637850:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSFrameUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.640200:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSWindowUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.642380:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/WindowPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.644041:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.646035:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.647713:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/FramePeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.649605:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEventMulticaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.651395:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.654375:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.656381:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.657940:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.659395:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.661648:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowFocusListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.663336:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowStateListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.665221:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ActionListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.666759:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ItemListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.668210:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AdjustmentListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.669643:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/TextListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.671099:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputMethodListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.672617:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.674045:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyBoundsListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.675557:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseWheelListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.678581:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuBar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.680493:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/MenuElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.684060:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultSingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.686608:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.688593:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuBarUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.691256:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/DefaultMenuLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.693573:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BoxLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.696346:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/DefaultLookup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.699217:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/LazyActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.700852:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ActionMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.702559:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.704650:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.709825:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.711935:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/AbstractButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.714362:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ItemSelectable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.717366:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.719278:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.721660:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.723956:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.728412:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.730184:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.731892:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/basic/BasicBorders.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.734728:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/Constructor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.736563:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AccessibleObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.738155:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AnnotatedElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.740123:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/ButtonListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.742097:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/AncestorListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.743910:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentInputMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.745440:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ComponentInputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.746967:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.758194:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BorderFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.762134:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/BevelBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.789412:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JCheckBoxMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.792299:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JToggleButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.794727:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.797047:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.798556:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRadioButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.812698:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/APQHandlers.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.814708:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/MessageManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.816658:INFO:CONSOLE(16968)] "INFO: Getting messages for lang: en_GB error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.817058:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.817319:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.824540:INFO:CONSOLE(16968)] "JSUtil caching 92337 bytes for swingjs/j2s/lang/Messages.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.850237:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.850491:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.855586:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en_GB.properties error 28-Nov-2025 17:48:24 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.855607:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.860730:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.864183:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.865781:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/font/FontRenderContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.882067:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.884675:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper8.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.886680:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapperI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.888576:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.892375:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.894011:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:24 [25091:25091:1128/174824.895654:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.921766:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ToolTipManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.925417:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.928730:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Timer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.931855:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.934704:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.937377:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPopupMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.939942:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.941987:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/JQueryUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.947201:INFO:CONSOLE(16968)] "JSUtil getting Java resource swingjs/jquery/j2sMenu.js error 28-Nov-2025 17:48:25 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.947402:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/j2sMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.949567:INFO:CONSOLE(16968)] "Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [24845] error 28-Nov-2025 17:48:25 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.951020:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuKeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.953588:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.957741:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/CompoundBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.961748:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JSeparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.964070:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.965509:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174824.991668:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyboardManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.012868:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SizeRequirements.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.022741:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.047427:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/JalviewChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.052360:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executors.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.056275:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/TimeUnit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.059181:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/LinkedBlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.061618:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.063541:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/BlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.065318:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/atomic/AtomicInteger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.067100:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/ReentrantLock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.068778:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Lock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.070677:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractQueuedSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.073160:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractOwnableSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.075159:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Condition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.077040:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadPoolExecutor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.079389:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/AbstractExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.081645:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.083014:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.084588:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/RejectedExecutionHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.086123:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.087945:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Semaphore.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.090030:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureSelectionManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.094544:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JDesktopPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.101521:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSDesktopPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.105224:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultDesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.107605:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.113188:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTarget.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.116509:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTargetContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.118000:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/SystemFlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.120079:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.121688:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.125262:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP error 28-Nov-2025 17:48:25 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.126858:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/JalviewTaskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.128950:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Taskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.132609:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/Resizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.135867:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSFunction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.155765:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.157061:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Commands.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.161282:INFO:CONSOLE(16968)] "WARN: Error when running commands error 28-Nov-2025 17:48:25 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.161301:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.191245:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/net/ssl/HttpsURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.199523:INFO:CONSOLE(10504)] "xhr.open binary async=false url=https://www.jalview.org/jalview-js//swingjs/j2s/build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.212188:INFO:CONSOLE(26)] "Non-fatal exception when checking version at https://www.jalview.org/jalview-js//swingjs/j2s/build_properties: error 28-Nov-2025 17:48:25 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.212210:INFO:CONSOLE(26)] "java.io.FileNotFoundException: opening https://www.jalview.org/jalview-js//swingjs/j2s/build_properties error 28-Nov-2025 17:48:25 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.212220:INFO:CONSOLE(26)] "anonymous.anonymous(Unknown Source) error 28-Nov-2025 17:48:25 ", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.225231:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/HTML5CanvasContext2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.231203:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.235826:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunGraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.252953:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/CausedFocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.266842:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.272521:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimSort.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.275403:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ListIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.328288:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/SentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.331628:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663) error 28-Nov-2025 17:48:25 [25091:25091:1128/174825.437772:WARNING:pref_notifier_impl.cc(41)] Pref observer for media_router.cast_allow_all_ips found at shutdown. build 28-Nov-2025 17:48:30 build 28-Nov-2025 17:48:30 > Task :jalviewjsLaunchTest build 28-Nov-2025 17:48:30 Found line '[25091:25091:1128/174825.125262:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP' build 28-Nov-2025 17:48:30 :jalviewjsLaunchTest (Thread[Execution worker for ':',5,main]) completed. Took 10.581 secs. build 28-Nov-2025 17:48:30 :jalviewjs (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:30 build 28-Nov-2025 17:48:30 > Task :jalviewjs build 28-Nov-2025 17:48:30 Skipping task ':jalviewjs' as it has no actions. build 28-Nov-2025 17:48:30 :jalviewjs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:48:30 :jalviewjsSiteTar (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:32 build 28-Nov-2025 17:48:32 > Task :jalviewjsSiteTar build 28-Nov-2025 17:48:32 Execution optimizations have been disabled for task ':jalviewjsSiteTar' to ensure correctness due to the following reasons: build 28-Nov-2025 17:48:32 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site'. Reason: Task ':jalviewjsSiteTar' uses this output of task ':jalviewjsCopyStderrLaunchFile' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 28-Nov-2025 17:48:32 Invalidating VFS because task ':jalviewjsSiteTar' failed validation build 28-Nov-2025 17:48:32 Caching disabled for task ':jalviewjsSiteTar' because: build 28-Nov-2025 17:48:32 Build cache is disabled build 28-Nov-2025 17:48:32 Task ':jalviewjsSiteTar' is not up-to-date because: build 28-Nov-2025 17:48:32 Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. build 28-Nov-2025 17:48:33 :jalviewjsSiteTar (Thread[Execution worker for ':',5,main]) completed. Took 2.625 secs. build 28-Nov-2025 17:48:33 producer locations for task group 1 (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:33 producer locations for task group 1 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:48:33 producer locations for task group 2 (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:33 producer locations for task group 2 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:48:33 producer locations for task group 3 (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:33 producer locations for task group 3 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:48:33 producer locations for task group 4 (Thread[Execution worker for ':',5,main]) started. build 28-Nov-2025 17:48:33 producer locations for task group 4 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. build 28-Nov-2025 17:48:33 build 28-Nov-2025 17:48:33 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. build 28-Nov-2025 17:48:33 build 28-Nov-2025 17:48:33 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. build 28-Nov-2025 17:48:33 build 28-Nov-2025 17:48:33 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings build 28-Nov-2025 17:48:33 build 28-Nov-2025 17:48:33 Execution optimizations have been disabled for 3 invalid unit(s) of work during this build to ensure correctness. build 28-Nov-2025 17:48:33 Please consult deprecation warnings for more details. build 28-Nov-2025 17:48:33 build 28-Nov-2025 17:48:33 BUILD SUCCESSFUL in 2m 6s build 28-Nov-2025 17:48:33 29 actionable tasks: 27 executed, 2 up-to-date build 28-Nov-2025 17:48:33 VCS Checkout Cache (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/vcs-1) removing files not accessed on or after Fri Nov 21 17:46:30 GMT 2025. build 28-Nov-2025 17:48:33 VCS Checkout Cache (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/vcs-1) cleanup deleted 0 files/directories. build 28-Nov-2025 17:48:33 VCS Checkout Cache (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/vcs-1) cleaned up in 0.001 secs. build 28-Nov-2025 17:48:33 dependencies-accessors (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/7.4.2/dependencies-accessors) removing files not accessed on or after Fri Nov 21 17:46:31 GMT 2025. build 28-Nov-2025 17:48:33 dependencies-accessors (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/7.4.2/dependencies-accessors) cleanup deleted 0 files/directories. build 28-Nov-2025 17:48:33 dependencies-accessors (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/7.4.2/dependencies-accessors) cleaned up in 0.0 secs. simple 28-Nov-2025 17:48:33 Finished task 'JalviewJS build site and distributable tar' with result: Success simple 28-Nov-2025 17:48:33 Running post build plugin 'NCover Results Collector' simple 28-Nov-2025 17:48:33 Running post build plugin 'Artifact Copier' simple 28-Nov-2025 17:48:33 Publishing an artifact: JalviewJS site tar file simple 28-Nov-2025 17:48:33 Finished publishing of artifact Shared artifact: [JalviewJS site tar file], pattern: [jalviewjs-site-*.tar.gz] anchored at: [build/distributions/] in 42.25 ms simple 28-Nov-2025 17:48:33 Publishing an artifact: JalviewJS site simple 28-Nov-2025 17:48:39 Finished publishing of artifact Shared artifact: [JalviewJS site], pattern: [**/*] anchored at: [build/jalviewjs/site] in 5.328 s simple 28-Nov-2025 17:48:39 Running post build plugin 'Artifactory Release Management Staging' simple 28-Nov-2025 17:48:39 Running post build plugin 'Artifactory Build Info Copier' simple 28-Nov-2025 17:48:39 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 28-Nov-2025 17:48:39 Running post build plugin 'npm Cache Cleanup' simple 28-Nov-2025 17:48:39 Running post build plugin 'Clover Results Collector' simple 28-Nov-2025 17:48:39 Running post build plugin 'Docker Container Cleanup' simple 28-Nov-2025 17:48:39 Finalising the build... simple 28-Nov-2025 17:48:39 Stopping timer. simple 28-Nov-2025 17:48:39 Build JB-GJB57-JOB1-3 completed. simple 28-Nov-2025 17:48:39 Running on server: post build plugin 'NCover Results Collector' simple 28-Nov-2025 17:48:39 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 28-Nov-2025 17:48:39 Running on server: post build plugin 'Clover Delta Calculator' simple 28-Nov-2025 17:48:39 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 28-Nov-2025 17:48:39 All post build plugins have finished simple 28-Nov-2025 17:48:39 Generating build results summary... simple 28-Nov-2025 17:48:39 Saving build results to disk... simple 28-Nov-2025 17:48:39 Logging substituted variables... simple 28-Nov-2025 17:48:39 Indexing build results... simple 28-Nov-2025 17:48:39 Finished building JB-GJB57-JOB1-3.