simple	27-Nov-2025 17:19:04	Build Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Default Job #2 (JB-GJB57-JOB1-2) started building on agent Default Agent
simple	27-Nov-2025 17:19:04	
simple	27-Nov-2025 17:19:05	Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1
simple	27-Nov-2025 17:19:05	Executing build Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Default Job #2 (JB-GJB57-JOB1-2)
simple	27-Nov-2025 17:19:05	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	27-Nov-2025 17:19:05	Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1
simple	27-Nov-2025 17:19:05	Updating source code to revision: c0746f1378bd64b7cf72b082eca210d21f86feff
simple	27-Nov-2025 17:19:05	Fetching 'refs/heads/bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest' from 'https://gitlab.jalview.org/jalview/jalview.git'.
simple	27-Nov-2025 17:19:07	Checking out revision c0746f1378bd64b7cf72b082eca210d21f86feff.
simple	27-Nov-2025 17:19:07	From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0
simple	27-Nov-2025 17:19:07	   d92ec98..c0746f1  bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest -> origin/bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest
simple	27-Nov-2025 17:19:07	 * [new branch]      bug/JAL-4601_manual_import_of_jpred_annotation_data_doesnt_display_ss_consensus -> origin/bug/JAL-4601_manual_import_of_jpred_annotation_data_doesnt_display_ss_consensus
simple	27-Nov-2025 17:19:07	   b0fd08a..d96cd12  development/Release_2_11_5_Branch -> origin/development/Release_2_11_5_Branch
simple	27-Nov-2025 17:19:07	 * [new branch]      patch/JAL-4601_stk_ss_annots_showhide -> origin/patch/JAL-4601_stk_ss_annots_showhide
simple	27-Nov-2025 17:19:07	   86d2c84..a66e20b  releases/Release_2_11_5_Branch -> origin/releases/Release_2_11_5_Branch
simple	27-Nov-2025 17:19:10	Already on 'bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest'
simple	27-Nov-2025 17:19:10	Your branch is behind 'origin/bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest' by 1 commit, and can be fast-forwarded.
simple	27-Nov-2025 17:19:10	  (use "git pull" to update your local branch)
simple	27-Nov-2025 17:19:10	HEAD is now at c0746f1 JAL-4581.  Added an MD5 hash for jalview.ext.htsjdk.HtsContigDb.  Made jalview.util.DigestUtils for MD5 and SHA256 digest.  Adapted net.meyfa.sha256.Sha256 to not use java.nio.IntBuffer and java.nio.ByteBuffer (not supported by SwingJS).
simple	27-Nov-2025 17:19:10	Updated source code to revision: c0746f1378bd64b7cf72b082eca210d21f86feff
simple	27-Nov-2025 17:19:10	Finished task 'Checkout Default Repository' with result: Success
simple	27-Nov-2025 17:19:10	Running pre-build action: VCS Version Collector
simple	27-Nov-2025 17:19:10	Running pre-build action: Artifactory Release Staging
simple	27-Nov-2025 17:19:10	Starting task 'JalviewJS build site and distributable tar' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	27-Nov-2025 17:19:10	Bamboo Artifactory Plugin version: 2.6.2
command	27-Nov-2025 17:19:10	Beginning to execute external process for build 'Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Default Job #2 (JB-GJB57-JOB1-2)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest --info clean eclipse jalviewjsCreateJ2sSettings jalviewjs jalviewjsSiteTar\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_repository_revision_number=c0746f1378bd64b7cf72b082eca210d21f86feff\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GJB57-JOB1-2\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GJB57-JOB1\nbamboo_shortPlanName=bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=2\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GJB57-JOB1-2\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_repository_46498597_previous_revision_number=d92ec98a32dc75a9fd0c635c803d00d60ce92f97\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_shortPlanKey=GJB57\nbamboo_shortJobKey=JOB1\nbamboo_repository_46498597_name=Jalview Gitlab\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=c0746f1378bd64b7cf72b082eca210d21f86feff\nbamboo_buildTimeStamp=2025-11-27T17:13:25.980Z\nbamboo_repository_previous_revision_number=d92ec98a32dc75a9fd0c635c803d00d60ce92f97\nbamboo_repository_46498597_git_branch=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_planRepository_previousRevision=d92ec98a32dc75a9fd0c635c803d00d60ce92f97\nbamboo_repository_git_branch=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_buildResultKey=JB-GJB57-JOB1-2\nbamboo_repository_branch_name=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_buildPlanName=Jalview Builds - Gradle JalviewJS Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=c0746f1378bd64b7cf72b082eca210d21f86feff\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=d92ec98a32dc75a9fd0c635c803d00d60ce92f97\nbamboo_planRepository_branchDisplayName=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_repository_46498597_revision_number=c0746f1378bd64b7cf72b082eca210d21f86feff\nbamboo_plan_storageTag=plan-46302765\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1\nbamboo_planKey=JB-GJB57\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_repository_46498597_git_username=\nbamboo_planRepository_username=\nbamboo_repository_46498597_branch_name=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nbamboo_repository_46498597_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	27-Nov-2025 17:19:11	Initialized native services in: /srv/bamboo/home/bamboo/.gradle/native
build	27-Nov-2025 17:19:11	Initialized jansi services in: /srv/bamboo/home/bamboo/.gradle/native
build	27-Nov-2025 17:19:12	The client will now receive all logging from the daemon (pid: 22280). The daemon log file: /srv/bamboo/home/bamboo/.gradle/daemon/7.4.2/daemon-22280.out.log
build	27-Nov-2025 17:19:12	Starting 6th build in daemon [uptime: 4 hrs 34 mins 52.222 secs, performance: 100%, non-heap usage: 36% of 256 MiB]
build	27-Nov-2025 17:19:12	Using 4 worker leases.
build	27-Nov-2025 17:19:12	Watching the file system is configured to be enabled if available
build	27-Nov-2025 17:19:12	File system watching is inactive
build	27-Nov-2025 17:19:12	Starting Build
build	27-Nov-2025 17:19:12	Invalidating in-memory cache of /srv/bamboo/home/bamboo/.gradle/caches/journal-1/file-access.bin
build	27-Nov-2025 17:19:12	Invalidating in-memory cache of /srv/bamboo/home/bamboo/.gradle/caches/7.4.2/fileHashes/fileHashes.bin
build	27-Nov-2025 17:19:12	Invalidating in-memory cache of /srv/bamboo/home/bamboo/.gradle/caches/7.4.2/fileHashes/resourceHashesCache.bin
build	27-Nov-2025 17:19:12	Settings evaluated using settings file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/settings.gradle'.
build	27-Nov-2025 17:19:12	Projects loaded. Root project using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build.gradle'.
build	27-Nov-2025 17:19:12	Included projects: [root project 'jalview']
build	27-Nov-2025 17:19:13	
build	27-Nov-2025 17:19:13	> Configure project :
build	27-Nov-2025 17:19:13	Evaluating root project 'jalview' using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build.gradle'.
build	27-Nov-2025 17:19:13	Using properties from file './utils/channels/default/channel_gradle.properties'
build	27-Nov-2025 17:19:13	JALVIEW_VERSION is set to '2.11.5.1'
build	27-Nov-2025 17:19:13	HEADLESS BUILD
build	27-Nov-2025 17:19:13	J2S ENABLED
build	27-Nov-2025 17:19:13	Using a LOCAL profile.
build	27-Nov-2025 17:19:13	file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/main/java', not found
build	27-Nov-2025 17:19:13	file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/doc_build', not found
build	27-Nov-2025 17:19:13	file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/classes', not found
build	27-Nov-2025 17:19:13	eclipseDir exists
build	27-Nov-2025 17:19:13	All projects evaluated.
build	27-Nov-2025 17:19:13	Selected primary task 'clean' from project :
build	27-Nov-2025 17:19:13	Selected primary task 'eclipse' from project :
build	27-Nov-2025 17:19:13	Selected primary task 'jalviewjsCreateJ2sSettings' from project :
build	27-Nov-2025 17:19:13	Selected primary task 'jalviewjs' from project :
build	27-Nov-2025 17:19:13	Selected primary task 'jalviewjsSiteTar' from project :
build	27-Nov-2025 17:19:13	Tasks to be executed: [task ':clean', task ':eclipseClasspath', task ':eclipseJdt', task ':eclipseProject', task ':eclipse', task ':jalviewjsCreateJ2sSettings', task ':jalviewjsEclipsePaths', task ':jalviewjsEclipseCopyDropins', task ':jalviewjsSetEclipseWorkspace', task ':jalviewjsEclipseSetup', task ':jalviewjsEnableAltFileProperty', task ':eclipseSetup', task ':jalviewjsProjectImport', task ':jalviewjsTranspile', task ':jalviewjsCopyTransferSiteJs', task ':jalviewjsTransferUnzipLib', task ':jalviewjsTransferUnzipSwingJs', task ':jalviewjsTransferUnzipAllLibs', task ':jalviewjsSyncAllLibs', task ':copyResources', task ':createBuildProperties', task ':jalviewjsSyncBuildProperties', task ':jalviewjsBuildAllCores', task ':jalviewjsPublishCoreTemplates', task ':jalviewjsSyncCore', task ':copyChannelResources', task ':buildResources', task ':jalviewjsSyncResources', task ':jalviewjsSyncSiteResources', task ':jalviewjsPrepareSite', task ':jalviewjsBuildSite', task ':cleanJalviewjsChromiumUserDir', task ':jalviewjsChromiumProfile', task ':jalviewjsCopyStderrLaunchFile', task ':jalviewjsLaunchTest', task ':jalviewjs', task ':jalviewjsSiteTar']
build	27-Nov-2025 17:19:13	Tasks that were excluded: []
build	27-Nov-2025 17:19:13	:clean (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :clean
build	27-Nov-2025 17:19:14	Caching disabled for task ':clean' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Task ':clean' is not up-to-date because:
build	27-Nov-2025 17:19:14	  Task has not declared any outputs despite executing actions.
build	27-Nov-2025 17:19:14	:clean (Thread[Execution worker for ':',5,main]) completed. Took 0.949 secs.
build	27-Nov-2025 17:19:14	:jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :jalviewjsEclipsePaths
build	27-Nov-2025 17:19:14	Caching disabled for task ':jalviewjsEclipsePaths' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Task ':jalviewjsEclipsePaths' is not up-to-date because:
build	27-Nov-2025 17:19:14	  Task has not declared any outputs despite executing actions.
build	27-Nov-2025 17:19:14	Running task jalviewjsEclipsePaths as IN_ECLIPSE=false
build	27-Nov-2025 17:19:14	ECLIPSE VERSION=4.28.0
build	27-Nov-2025 17:19:14	:jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build	27-Nov-2025 17:19:14	destroyer locations for task group 0 (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	destroyer locations for task group 0 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:19:14	:eclipseClasspath (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :eclipseClasspath
build	27-Nov-2025 17:19:14	Caching disabled for task ':eclipseClasspath' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Task ':eclipseClasspath' is not up-to-date because:
build	27-Nov-2025 17:19:14	  Task.upToDateWhen is false.
build	27-Nov-2025 17:19:14	:eclipseClasspath (Thread[Execution worker for ':',5,main]) completed. Took 0.214 secs.
build	27-Nov-2025 17:19:14	:eclipseJdt (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :eclipseJdt
build	27-Nov-2025 17:19:14	Caching disabled for task ':eclipseJdt' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Task ':eclipseJdt' is not up-to-date because:
build	27-Nov-2025 17:19:14	  Task.upToDateWhen is false.
build	27-Nov-2025 17:19:14	:eclipseJdt (Thread[Execution worker for ':',5,main]) completed. Took 0.035 secs.
build	27-Nov-2025 17:19:14	:eclipseProject (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :eclipseProject
build	27-Nov-2025 17:19:14	Caching disabled for task ':eclipseProject' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Task ':eclipseProject' is not up-to-date because:
build	27-Nov-2025 17:19:14	  Task.upToDateWhen is false.
build	27-Nov-2025 17:19:14	:eclipseProject (Thread[Execution worker for ':',5,main]) completed. Took 0.012 secs.
build	27-Nov-2025 17:19:14	:eclipse (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :eclipse
build	27-Nov-2025 17:19:14	Skipping task ':eclipse' as it has no actions.
build	27-Nov-2025 17:19:14	:eclipse (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:19:14	:jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :jalviewjsCreateJ2sSettings
build	27-Nov-2025 17:19:14	Caching disabled for task ':jalviewjsCreateJ2sSettings' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Task ':jalviewjsCreateJ2sSettings' is not up-to-date because:
build	27-Nov-2025 17:19:14	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/config/j2s has been removed.
build	27-Nov-2025 17:19:14	  Output property 'outputFile' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/config/j2s has been removed.
build	27-Nov-2025 17:19:14	:jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) completed. Took 0.005 secs.
build	27-Nov-2025 17:19:14	:jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :jalviewjsEclipseCopyDropins
build	27-Nov-2025 17:19:14	Caching disabled for task ':jalviewjsEclipseCopyDropins' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Task ':jalviewjsEclipseCopyDropins' is not up-to-date because:
build	27-Nov-2025 17:19:14	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins has been removed.
build	27-Nov-2025 17:19:14	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins/com.seeq.eclipse.importprojects.jar has been removed.
build	27-Nov-2025 17:19:14	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins/net.sf.j2s.core-j11.jar has been removed.
build	27-Nov-2025 17:19:14	:jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) completed. Took 0.006 secs.
build	27-Nov-2025 17:19:14	:jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :jalviewjsSetEclipseWorkspace
build	27-Nov-2025 17:19:14	Caching disabled for task ':jalviewjsSetEclipseWorkspace' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Task ':jalviewjsSetEclipseWorkspace' is not up-to-date because:
build	27-Nov-2025 17:19:14	  Task.upToDateWhen is false.
build	27-Nov-2025 17:19:14	Running task jalviewjsSetEclipseWorkspace as IN_ECLIPSE=false
build	27-Nov-2025 17:19:14	EXISTING ECLIPSE WORKSPACE: /tmp/groovy-generated-tmpdir-3454697636647237598
build	27-Nov-2025 17:19:14	:jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build	27-Nov-2025 17:19:14	:jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :jalviewjsEclipseSetup
build	27-Nov-2025 17:19:14	Skipping task ':jalviewjsEclipseSetup' as it has no actions.
build	27-Nov-2025 17:19:14	:jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:19:14	:jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :jalviewjsEnableAltFileProperty UP-TO-DATE
build	27-Nov-2025 17:19:14	Caching disabled for task ':jalviewjsEnableAltFileProperty' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Skipping task ':jalviewjsEnableAltFileProperty' as it is up-to-date.
build	27-Nov-2025 17:19:14	:jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) completed. Took 0.003 secs.
build	27-Nov-2025 17:19:14	:eclipseSetup (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :eclipseSetup
build	27-Nov-2025 17:19:14	Skipping task ':eclipseSetup' as it has no actions.
build	27-Nov-2025 17:19:14	:eclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:19:14	:jalviewjsProjectImport (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:14	
build	27-Nov-2025 17:19:14	> Task :jalviewjsProjectImport UP-TO-DATE
build	27-Nov-2025 17:19:14	Caching disabled for task ':jalviewjsProjectImport' because:
build	27-Nov-2025 17:19:14	  Build cache is disabled
build	27-Nov-2025 17:19:14	Skipping task ':jalviewjsProjectImport' as it is up-to-date.
build	27-Nov-2025 17:19:14	:jalviewjsProjectImport (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:19:14	:jalviewjsTranspile (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:19:16	
build	27-Nov-2025 17:19:16	> Task :jalviewjsTranspile
build	27-Nov-2025 17:19:16	Caching disabled for task ':jalviewjsTranspile' because:
build	27-Nov-2025 17:19:16	  Build cache is disabled
build	27-Nov-2025 17:19:16	Task ':jalviewjsTranspile' is not up-to-date because:
build	27-Nov-2025 17:19:16	  Task.upToDateWhen is false.
build	27-Nov-2025 17:19:16	Running task jalviewjsTranspile as IN_ECLIPSE=false
build	27-Nov-2025 17:19:16	Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application org.eclipse.jdt.apt.core.aptBuild -data /tmp/groovy-generated-tmpdir-3454697636647237598 -cleanBuild jalview --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s
build	27-Nov-2025 17:19:16	Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''
error	27-Nov-2025 17:19:16	SLF4J: No SLF4J providers were found.
error	27-Nov-2025 17:19:16	SLF4J: Defaulting to no-operation (NOP) logger implementation
error	27-Nov-2025 17:19:16	SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
build	27-Nov-2025 17:19:23	Invoking 'Java Builder' on '/jalview'.
build	27-Nov-2025 17:19:24	net.sf.j2s.core.3.3.1/3.3.1-v1 started
build	27-Nov-2025 17:19:24	J2S CompilationParticipant started
build	27-Nov-2025 17:19:24	J2S isActive true /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 
build	27-Nov-2025 17:19:24	J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1
build	27-Nov-2025 17:19:24	J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1
build	27-Nov-2025 17:19:24	Cleaning output folder for jalview
build	27-Nov-2025 17:19:24	Build done
build	27-Nov-2025 17:19:24	Invoking 'Gradle Project Builder' on '/jalview'.
build	27-Nov-2025 17:19:26	Invoking 'Java Builder' on '/jalview'.
build	27-Nov-2025 17:19:26	J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1
build	27-Nov-2025 17:19:26	Preparing to build jalview
build	27-Nov-2025 17:19:26	Cleaning output folder for jalview
build	27-Nov-2025 17:19:26	J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1
build	27-Nov-2025 17:19:26	Copying resources to the output folder
build	27-Nov-2025 17:19:26	Analyzing sources
build	27-Nov-2025 17:19:26	J2S buildStarting 1107 files, contexts.size() = 1, isBatch=true
build	27-Nov-2025 17:19:26	Compiling jalview/src/com/github/reinert/jjschema
build	27-Nov-2025 17:19:29	Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 1 warning) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 2 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 3 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 4 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 5 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 9 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 12 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 13 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 14 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 15 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 37 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 38 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 46 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 47 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 48 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 49 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 50 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 51 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 52 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 59 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 63 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 67 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 69 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 89 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 90 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:29	(Found 91 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:30	(Found 98 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:30	(Found 108 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:30	(Found 113 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:30	(Found 114 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:30	(Found 115 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:30	(Found 119 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:30	(Found 120 warnings) Compiling jalview/src/com/stevesoft/pat
build	27-Nov-2025 17:19:30	(Found 120 warnings) Compiling jalview/src/com/stevesoft/pat/wrap
build	27-Nov-2025 17:19:30	(Found 124 warnings) Compiling jalview/src/darrylbu/util
build	27-Nov-2025 17:19:30	(Found 124 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	27-Nov-2025 17:19:30	(Found 126 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	27-Nov-2025 17:19:30	(Found 135 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	27-Nov-2025 17:19:30	(Found 138 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2/port
build	27-Nov-2025 17:19:30	(Found 138 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:30	(Found 145 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 152 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 190 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 197 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 253 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 285 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 292 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 360 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 363 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 366 warnings) Compiling jalview/src/ext/vamsas
build	27-Nov-2025 17:19:31	(Found 367 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 372 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 375 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 381 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 386 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 419 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 427 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 428 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 429 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 430 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 432 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 433 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 434 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 440 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 447 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 473 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:31	(Found 477 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:32	(Found 479 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:32	(Found 514 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:32	(Found 580 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:32	(Found 581 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:32	(Found 587 warnings) Compiling jalview/src/jalview/analysis
build	27-Nov-2025 17:19:32	(Found 587 warnings) Compiling jalview/src/jalview/analysis/scoremodels
build	27-Nov-2025 17:19:32	(Found 597 warnings) Compiling jalview/src/jalview/analytics
build	27-Nov-2025 17:19:32	(Found 597 warnings) Compiling jalview/src/jalview/api
build	27-Nov-2025 17:19:32	(Found 597 warnings) Compiling jalview/src/jalview/api/analysis
build	27-Nov-2025 17:19:32	(Found 598 warnings) Compiling jalview/src/jalview/api/structures
build	27-Nov-2025 17:19:32	(Found 601 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 657 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 666 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 667 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 672 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 673 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 675 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 686 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 688 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 693 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 694 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 695 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 696 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 698 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 700 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 701 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 703 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 704 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 709 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 710 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 711 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 713 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 714 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 716 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 724 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 734 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 735 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 736 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 738 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 739 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 744 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 747 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 784 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 786 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 787 warnings) Compiling jalview/src/jalview/appletgui
build	27-Nov-2025 17:19:33	(Found 787 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 791 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 793 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 794 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 801 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 803 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 3 errors + 861 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 3 errors + 866 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 3 errors + 868 warnings) Compiling jalview/src/jalview/bin
build	27-Nov-2025 17:19:33	(Found 3 errors + 868 warnings) Compiling jalview/src/jalview/bin/argparser
build	27-Nov-2025 17:19:33	(Found 3 errors + 869 warnings) Compiling jalview/src/jalview/bin/argparser
build	27-Nov-2025 17:19:33	(Found 3 errors + 871 warnings) Compiling jalview/src/jalview/bin/argparser
build	27-Nov-2025 17:19:33	(Found 3 errors + 872 warnings) Compiling jalview/src/jalview/bin/argparser
build	27-Nov-2025 17:19:33	(Found 3 errors + 872 warnings) Compiling jalview/src/jalview/bin/groovy
build	27-Nov-2025 17:19:33	(Found 3 errors + 872 warnings) Compiling jalview/src/jalview/commands
build	27-Nov-2025 17:19:34	(Found 3 errors + 872 warnings) Compiling jalview/src/jalview/controller
build	27-Nov-2025 17:19:34	(Found 3 errors + 872 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 885 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 886 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 887 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 890 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 891 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 892 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 898 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 902 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 904 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 905 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 906 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 907 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 912 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 913 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 921 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 922 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 923 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 926 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 932 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 936 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 940 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 942 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 943 warnings) Compiling jalview/src/jalview/datamodel
build	27-Nov-2025 17:19:34	(Found 3 errors + 944 warnings) Compiling jalview/src/jalview/datamodel/annotations
build	27-Nov-2025 17:19:34	(Found 3 errors + 944 warnings) Compiling jalview/src/jalview/datamodel/features
build	27-Nov-2025 17:19:34	(Found 3 errors + 944 warnings) Compiling jalview/src/jalview/exceptions
build	27-Nov-2025 17:19:34	(Found 3 errors + 944 warnings) Compiling jalview/src/jalview/ext/android
build	27-Nov-2025 17:19:34	(Found 3 errors + 944 warnings) Compiling jalview/src/jalview/ext/ensembl
build	27-Nov-2025 17:19:34	(Found 3 errors + 946 warnings) Compiling jalview/src/jalview/ext/ensembl
build	27-Nov-2025 17:19:34	(Found 3 errors + 948 warnings) Compiling jalview/src/jalview/ext/ensembl
build	27-Nov-2025 17:19:34	(Found 3 errors + 949 warnings) Compiling jalview/src/jalview/ext/ensembl
build	27-Nov-2025 17:19:34	(Found 3 errors + 951 warnings) Compiling jalview/src/jalview/ext/ensembl
build	27-Nov-2025 17:19:34	(Found 5 errors + 954 warnings) Compiling jalview/src/jalview/ext/htsjdk
build	27-Nov-2025 17:19:36	(Found 5 errors + 955 warnings) Compiling jalview/src/jalview/ext/htsjdk
build	27-Nov-2025 17:19:36	(Found 5 errors + 961 warnings) Compiling jalview/src/jalview/ext/jmol
build	27-Nov-2025 17:19:36	(Found 5 errors + 965 warnings) Compiling jalview/src/jalview/ext/paradise
build	27-Nov-2025 17:19:36	(Found 5 errors + 965 warnings) Compiling jalview/src/jalview/ext/pymol
build	27-Nov-2025 17:19:36	(Found 5 errors + 967 warnings) Compiling jalview/src/jalview/ext/pymol
build	27-Nov-2025 17:19:36	(Found 5 errors + 967 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	27-Nov-2025 17:19:36	(Found 5 errors + 968 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	27-Nov-2025 17:19:36	(Found 5 errors + 969 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	27-Nov-2025 17:19:36	(Found 5 errors + 969 warnings) Compiling jalview/src/jalview/ext/so
build	27-Nov-2025 17:19:36	(Found 5 errors + 969 warnings) Compiling jalview/src/jalview/ext/varna
build	27-Nov-2025 17:19:36	(Found 5 errors + 969 warnings) Compiling jalview/src/jalview/fts/api
build	27-Nov-2025 17:19:36	(Found 5 errors + 970 warnings) Compiling jalview/src/jalview/fts/api
build	27-Nov-2025 17:19:36	(Found 5 errors + 971 warnings) Compiling jalview/src/jalview/fts/core
build	27-Nov-2025 17:19:36	(Found 5 errors + 974 warnings) Compiling jalview/src/jalview/fts/core
build	27-Nov-2025 17:19:36	(Found 5 errors + 975 warnings) Compiling jalview/src/jalview/fts/core
build	27-Nov-2025 17:19:36	(Found 5 errors + 976 warnings) Compiling jalview/src/jalview/fts/core
build	27-Nov-2025 17:19:36	(Found 5 errors + 976 warnings) Compiling jalview/src/jalview/fts/service/alphafold
build	27-Nov-2025 17:19:36	(Found 5 errors + 976 warnings) Compiling jalview/src/jalview/fts/service/pdb
build	27-Nov-2025 17:19:36	(Found 5 errors + 983 warnings) Compiling jalview/src/jalview/fts/service/pdb
build	27-Nov-2025 17:19:36	(Found 5 errors + 983 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	27-Nov-2025 17:19:36	(Found 5 errors + 985 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	27-Nov-2025 17:19:36	(Found 5 errors + 989 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	27-Nov-2025 17:19:36	(Found 5 errors + 993 warnings) Compiling jalview/src/jalview/fts/service/uniprot
build	27-Nov-2025 17:19:36	(Found 5 errors + 993 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 994 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 996 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 997 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 998 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 999 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1000 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1001 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1002 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1008 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1011 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1012 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1013 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1022 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1052 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1053 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1055 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1056 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1057 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1062 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1063 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1064 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1069 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1070 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1074 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1079 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1080 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1082 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1083 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1084 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1085 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1086 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1092 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1093 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1094 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1095 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1096 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1098 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1099 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1100 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:36	(Found 5 errors + 1103 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1105 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1112 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1114 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1116 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1117 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1118 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1121 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1125 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1134 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1143 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1146 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1147 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1148 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1150 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1151 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1153 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1159 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1161 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1162 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1163 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1222 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1230 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1231 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1258 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1261 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1268 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1326 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1339 warnings) Compiling jalview/src/jalview/gui
build	27-Nov-2025 17:19:38	(Found 5 errors + 1341 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	27-Nov-2025 17:19:38	(Found 5 errors + 1343 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	27-Nov-2025 17:19:38	(Found 5 errors + 1348 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	27-Nov-2025 17:19:38	(Found 5 errors + 1348 warnings) Compiling jalview/src/jalview/httpserver
build	27-Nov-2025 17:19:38	(Found 5 errors + 1348 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1353 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1355 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1357 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1359 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1380 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1382 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1384 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1388 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1391 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1392 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1393 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1394 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1432 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1435 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1437 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1457 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1491 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1493 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1495 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1496 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1497 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1510 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1572 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1573 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1574 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1656 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1661 warnings) Compiling jalview/src/jalview/io
build	27-Nov-2025 17:19:38	(Found 5 errors + 1661 warnings) Compiling jalview/src/jalview/io/cache
build	27-Nov-2025 17:19:38	(Found 5 errors + 1662 warnings) Compiling jalview/src/jalview/io/exceptions
build	27-Nov-2025 17:19:38	(Found 5 errors + 1662 warnings) Compiling jalview/src/jalview/io/gff
build	27-Nov-2025 17:19:38	(Found 5 errors + 1663 warnings) Compiling jalview/src/jalview/io/gff
build	27-Nov-2025 17:19:38	(Found 5 errors + 1663 warnings) Compiling jalview/src/jalview/io/packed
build	27-Nov-2025 17:19:38	(Found 5 errors + 1669 warnings) Compiling jalview/src/jalview/io/packed
build	27-Nov-2025 17:19:38	(Found 5 errors + 1670 warnings) Compiling jalview/src/jalview/io/packed
build	27-Nov-2025 17:19:38	(Found 5 errors + 1670 warnings) Compiling jalview/src/jalview/io/vamsas
build	27-Nov-2025 17:19:38	(Found 5 errors + 1688 warnings) Compiling jalview/src/jalview/io/vamsas
build	27-Nov-2025 17:19:38	(Found 5 errors + 1699 warnings) Compiling jalview/src/jalview/io/vamsas
build	27-Nov-2025 17:19:38	(Found 5 errors + 1700 warnings) Compiling jalview/src/jalview/io/vamsas
build	27-Nov-2025 17:19:38	(Found 5 errors + 1713 warnings) Compiling jalview/src/jalview/io/vamsas
build	27-Nov-2025 17:19:38	(Found 5 errors + 1717 warnings) Compiling jalview/src/jalview/io/vamsas
build	27-Nov-2025 17:19:38	(Found 5 errors + 1721 warnings) Compiling jalview/src/jalview/io/vamsas
build	27-Nov-2025 17:19:38	(Found 5 errors + 1744 warnings) Compiling jalview/src/jalview/io/vamsas
build	27-Nov-2025 17:19:38	(Found 5 errors + 1747 warnings) Compiling jalview/src/jalview/io/vcf
build	27-Nov-2025 17:19:38	(Found 6 errors + 1756 warnings) Compiling jalview/src/jalview/javascript
build	27-Nov-2025 17:19:38	(Found 6 errors + 1760 warnings) Compiling jalview/src/jalview/javascript
build	27-Nov-2025 17:19:38	(Found 6 errors + 1761 warnings) Compiling jalview/src/jalview/javascript/json
build	27-Nov-2025 17:19:38	(Found 6 errors + 1761 warnings) Compiling jalview/src/jalview/javascript/web
build	27-Nov-2025 17:19:38	(Found 6 errors + 1762 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1763 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1764 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1767 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1768 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1769 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1770 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1771 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1774 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1776 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1784 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1785 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1786 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1791 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1793 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1795 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1796 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1799 warnings) Compiling jalview/src/jalview/jbgui
build	27-Nov-2025 17:19:38	(Found 6 errors + 1799 warnings) Compiling jalview/src/jalview/json/binding/biojs
build	27-Nov-2025 17:19:38	(Found 6 errors + 1799 warnings) Compiling jalview/src/jalview/json/binding/biojson/v1
build	27-Nov-2025 17:19:38	(Found 6 errors + 1802 warnings) Compiling jalview/src/jalview/log
build	27-Nov-2025 17:19:38	(Found 6 errors + 1804 warnings) Compiling jalview/src/jalview/log
build	27-Nov-2025 17:19:38	(Found 6 errors + 1805 warnings) Compiling jalview/src/jalview/log
build	27-Nov-2025 17:19:38	(Found 6 errors + 1805 warnings) Compiling jalview/src/jalview/math
build	27-Nov-2025 17:19:38	(Found 6 errors + 1806 warnings) Compiling jalview/src/jalview/math
build	27-Nov-2025 17:19:38	(Found 6 errors + 1807 warnings) Compiling jalview/src/jalview/math
build	27-Nov-2025 17:19:38	(Found 6 errors + 1834 warnings) Compiling jalview/src/jalview/project
build	27-Nov-2025 17:19:38	(Found 6 errors + 1836 warnings) Compiling jalview/src/jalview/renderer
build	27-Nov-2025 17:19:38	(Found 6 errors + 1837 warnings) Compiling jalview/src/jalview/renderer
build	27-Nov-2025 17:19:39	(Found 6 errors + 1837 warnings) Compiling jalview/src/jalview/renderer/api
build	27-Nov-2025 17:19:39	(Found 6 errors + 1837 warnings) Compiling jalview/src/jalview/renderer/seqfeatures
build	27-Nov-2025 17:19:39	(Found 6 errors + 1837 warnings) Compiling jalview/src/jalview/rest
build	27-Nov-2025 17:19:39	(Found 6 errors + 1837 warnings) Compiling jalview/src/jalview/schemes
build	27-Nov-2025 17:19:39	(Found 6 errors + 1840 warnings) Compiling jalview/src/jalview/schemes
build	27-Nov-2025 17:19:39	(Found 6 errors + 1840 warnings) Compiling jalview/src/jalview/structure
build	27-Nov-2025 17:19:39	(Found 6 errors + 1841 warnings) Compiling jalview/src/jalview/structure
build	27-Nov-2025 17:19:39	(Found 6 errors + 1842 warnings) Compiling jalview/src/jalview/structure
build	27-Nov-2025 17:19:40	(Found 6 errors + 1847 warnings) Compiling jalview/src/jalview/structure
build	27-Nov-2025 17:19:40	(Found 6 errors + 1848 warnings) Compiling jalview/src/jalview/structures/models
build	27-Nov-2025 17:19:40	(Found 6 errors + 1848 warnings) Compiling jalview/src/jalview/urls
build	27-Nov-2025 17:19:40	(Found 6 errors + 1849 warnings) Compiling jalview/src/jalview/urls
build	27-Nov-2025 17:19:40	(Found 6 errors + 1849 warnings) Compiling jalview/src/jalview/urls/api
build	27-Nov-2025 17:19:40	(Found 6 errors + 1849 warnings) Compiling jalview/src/jalview/urls/applet
build	27-Nov-2025 17:19:40	(Found 6 errors + 1849 warnings) Compiling jalview/src/jalview/urls/desktop
build	27-Nov-2025 17:19:40	(Found 6 errors + 1849 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1850 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1851 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1856 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1862 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1863 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1875 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1876 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1879 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1884 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1887 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1888 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1891 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1895 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 6 errors + 1899 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 8 errors + 1899 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 8 errors + 1923 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 8 errors + 1924 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 8 errors + 1924 warnings) Compiling jalview/src/jalview/util/dialogrunner
build	27-Nov-2025 17:19:40	(Found 8 errors + 1924 warnings) Compiling jalview/src/jalview/util/imagemaker
build	27-Nov-2025 17:19:40	(Found 8 errors + 1924 warnings) Compiling jalview/src/jalview/util
build	27-Nov-2025 17:19:40	(Found 8 errors + 1924 warnings) Compiling jalview/src/jalview/util/matcher
build	27-Nov-2025 17:19:40	(Found 8 errors + 1924 warnings) Compiling jalview/src/jalview/viewmodel
build	27-Nov-2025 17:19:40	(Found 8 errors + 1927 warnings) Compiling jalview/src/jalview/viewmodel
build	27-Nov-2025 17:19:40	(Found 8 errors + 1927 warnings) Compiling jalview/src/jalview/viewmodel/annotationfilter
build	27-Nov-2025 17:19:40	(Found 8 errors + 1928 warnings) Compiling jalview/src/jalview/viewmodel/seqfeatures
build	27-Nov-2025 17:19:40	(Found 8 errors + 1928 warnings) Compiling jalview/src/jalview/viewmodel/styles
build	27-Nov-2025 17:19:40	(Found 8 errors + 1928 warnings) Compiling jalview/src/jalview/workers
build	27-Nov-2025 17:19:40	(Found 8 errors + 1930 warnings) Compiling jalview/src/jalview/workers
build	27-Nov-2025 17:19:40	(Found 8 errors + 1934 warnings) Compiling jalview/src/jalview/workers
build	27-Nov-2025 17:19:40	(Found 8 errors + 1934 warnings) Compiling jalview/src/jalview/ws
build	27-Nov-2025 17:19:40	(Found 8 errors + 1936 warnings) Compiling jalview/src/jalview/ws
build	27-Nov-2025 17:19:40	(Found 8 errors + 1940 warnings) Compiling jalview/src/jalview/ws
build	27-Nov-2025 17:19:40	(Found 8 errors + 1940 warnings) Compiling jalview/src/jalview/ws/datamodel
build	27-Nov-2025 17:19:40	(Found 8 errors + 1943 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold
build	27-Nov-2025 17:19:40	(Found 8 errors + 1948 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold
build	27-Nov-2025 17:19:40	(Found 8 errors + 1952 warnings) Compiling jalview/src/jalview/ws/dbsources
build	27-Nov-2025 17:19:40	(Found 8 errors + 1953 warnings) Compiling jalview/src/jalview/ws/dbsources
build	27-Nov-2025 17:19:40	(Found 8 errors + 1953 warnings) Compiling jalview/src/jalview/ws/ebi
build	27-Nov-2025 17:19:40	(Found 8 errors + 1953 warnings) Compiling jalview/src/jalview/ws/io/mime
build	27-Nov-2025 17:19:40	(Found 8 errors + 1953 warnings) Compiling jalview/src/jalview/ws/jws1
build	27-Nov-2025 17:19:40	(Found 8 errors + 1957 warnings) Compiling jalview/src/jalview/ws/jws1
build	27-Nov-2025 17:19:40	(Found 8 errors + 1965 warnings) Compiling jalview/src/jalview/ws/jws1
build	27-Nov-2025 17:19:40	(Found 8 errors + 1978 warnings) Compiling jalview/src/jalview/ws/jws1
build	27-Nov-2025 17:19:40	(Found 8 errors + 1992 warnings) Compiling jalview/src/jalview/ws/jws1
build	27-Nov-2025 17:19:40	(Found 8 errors + 1998 warnings) Compiling jalview/src/jalview/ws/jws1
build	27-Nov-2025 17:19:40	(Found 8 errors + 1999 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2000 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2010 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2017 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2031 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2034 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2038 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2044 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2050 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2062 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2064 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2068 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2094 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2117 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2118 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2123 warnings) Compiling jalview/src/jalview/ws/jws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2129 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	27-Nov-2025 17:19:40	(Found 8 errors + 2133 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	27-Nov-2025 17:19:40	(Found 8 errors + 2136 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	27-Nov-2025 17:19:40	(Found 8 errors + 2147 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	27-Nov-2025 17:19:40	(Found 8 errors + 2154 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2
build	27-Nov-2025 17:19:40	(Found 8 errors + 2154 warnings) Compiling jalview/src/jalview/ws/params
build	27-Nov-2025 17:19:40	(Found 8 errors + 2155 warnings) Compiling jalview/src/jalview/ws/params
build	27-Nov-2025 17:19:40	(Found 8 errors + 2155 warnings) Compiling jalview/src/jalview/ws/params/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2156 warnings) Compiling jalview/src/jalview/ws/params/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2156 warnings) Compiling jalview/src/jalview/ws/rest
build	27-Nov-2025 17:19:40	(Found 8 errors + 2157 warnings) Compiling jalview/src/jalview/ws/rest
build	27-Nov-2025 17:19:40	(Found 8 errors + 2162 warnings) Compiling jalview/src/jalview/ws/rest
build	27-Nov-2025 17:19:40	(Found 8 errors + 2163 warnings) Compiling jalview/src/jalview/ws/rest
build	27-Nov-2025 17:19:40	(Found 8 errors + 2164 warnings) Compiling jalview/src/jalview/ws/rest
build	27-Nov-2025 17:19:40	(Found 8 errors + 2170 warnings) Compiling jalview/src/jalview/ws/rest
build	27-Nov-2025 17:19:40	(Found 8 errors + 2179 warnings) Compiling jalview/src/jalview/ws/rest
build	27-Nov-2025 17:19:40	(Found 8 errors + 2185 warnings) Compiling jalview/src/jalview/ws/rest
build	27-Nov-2025 17:19:40	(Found 8 errors + 2185 warnings) Compiling jalview/src/jalview/ws/rest/params
build	27-Nov-2025 17:19:40	(Found 8 errors + 2188 warnings) Compiling jalview/src/jalview/ws/seqfetcher
build	27-Nov-2025 17:19:40	(Found 8 errors + 2188 warnings) Compiling jalview/src/jalview/ws/sifts
build	27-Nov-2025 17:19:40	(Found 8 errors + 2190 warnings) Compiling jalview/src/jalview/ws/sifts
build	27-Nov-2025 17:19:40	(Found 8 errors + 2193 warnings) Compiling jalview/src/jalview/ws/uimodel
build	27-Nov-2025 17:19:40	(Found 8 errors + 2193 warnings) Compiling jalview/src/jalview/ws/utils
build	27-Nov-2025 17:19:40	(Found 8 errors + 2193 warnings) Compiling jalview/src/jalview/xml/binding/embl
build	27-Nov-2025 17:19:40	(Found 8 errors + 2193 warnings) Compiling jalview/src/jalview/xml/binding/jalview
build	27-Nov-2025 17:19:40	(Found 8 errors + 2193 warnings) Compiling jalview/src/jalview/xml/binding/sifts
build	27-Nov-2025 17:19:40	(Found 8 errors + 2193 warnings) Compiling jalview/src/jalview/xml/binding/uniprot
build	27-Nov-2025 17:19:40	(Found 8 errors + 2200 warnings) Compiling jalview/src/mc_view
build	27-Nov-2025 17:19:40	(Found 8 errors + 2201 warnings) Compiling jalview/src/mc_view
build	27-Nov-2025 17:19:40	(Found 8 errors + 2206 warnings) Compiling jalview/src/mc_view
build	27-Nov-2025 17:19:40	(Found 8 errors + 2213 warnings) Compiling jalview/src/mc_view
build	27-Nov-2025 17:19:40	(Found 8 errors + 2216 warnings) Compiling jalview/src/mc_view
build	27-Nov-2025 17:19:40	(Found 8 errors + 2217 warnings) Compiling jalview/src/mc_view
build	27-Nov-2025 17:19:40	(Found 8 errors + 2217 warnings) Compiling jalview/src/net/meyfa/sha256
build	27-Nov-2025 17:19:40	(Found 8 errors + 2217 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	27-Nov-2025 17:19:40	(Found 8 errors + 2218 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	27-Nov-2025 17:19:40	(Found 8 errors + 2224 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	27-Nov-2025 17:19:40	(Found 8 errors + 2224 warnings) Compiling jalview/src/org/json
build	27-Nov-2025 17:19:40	(Found 8 errors + 2226 warnings) Compiling jalview/src/org/json
build	27-Nov-2025 17:19:40	(Found 8 errors + 2227 warnings) Compiling jalview/src/org/json
build	27-Nov-2025 17:19:40	(Found 8 errors + 2238 warnings) Compiling jalview/src/org/json/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2244 warnings) Compiling jalview/src/org/json/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2253 warnings) Compiling jalview/src/org/json/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2255 warnings) Compiling jalview/src/org/json/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2257 warnings) Compiling jalview/src/org/json/simple/parser
build	27-Nov-2025 17:19:40	(Found 8 errors + 2332 warnings) Compiling jalview/src/org/json/simple/parser
build	27-Nov-2025 17:19:40	(Found 8 errors + 2336 warnings) Compiling jalview/src/org/json/simple/parser
build	27-Nov-2025 17:19:40	(Found 8 errors + 2336 warnings) Compiling jalview/src/org/stackoverflowusers/file
build	27-Nov-2025 17:19:40	(Found 8 errors + 2336 warnings) Compiling jalview/src/swingjs/api
build	27-Nov-2025 17:19:40	(Found 8 errors + 2336 warnings) Compiling jalview/src/swingjs/api/js
build	27-Nov-2025 17:19:40	(Found 8 errors + 2337 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	27-Nov-2025 17:19:40	(Found 8 errors + 2339 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	27-Nov-2025 17:19:40	(Found 8 errors + 2340 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	27-Nov-2025 17:19:40	(Found 8 errors + 2342 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	27-Nov-2025 17:19:40	(Found 8 errors + 2345 warnings) Compiling jalview/src/uk/ac/ebi/www
build	27-Nov-2025 17:19:40	(Found 8 errors + 2348 warnings) Compiling jalview/src/uk/ac/ebi/www
build	27-Nov-2025 17:19:40	(Found 8 errors + 2351 warnings) Compiling jalview/src/uk/ac/ebi/www
build	27-Nov-2025 17:19:40	(Found 8 errors + 2358 warnings) Compiling jalview/src/uk/ac/ebi/www
build	27-Nov-2025 17:19:40	(Found 8 errors + 2406 warnings) Compiling jalview/src/uk/ac/ebi/www
build	27-Nov-2025 17:19:40	(Found 8 errors + 2448 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService
build	27-Nov-2025 17:19:40	(Found 8 errors + 2455 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService
build	27-Nov-2025 17:19:40	(Found 8 errors + 2455 warnings) Compiling jalview/src/vamsas
build	27-Nov-2025 17:19:40	(Found 8 errors + 2456 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2458 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2459 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2461 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2462 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2464 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2465 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2467 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2468 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2470 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2471 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2473 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2474 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2476 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2477 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2479 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2480 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2481 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2483 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2485 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2486 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2488 warnings) Compiling jalview/src/vamsas/objects/simple
build	27-Nov-2025 17:19:40	(Found 8 errors + 2488 warnings) Cleaning output folder for jalview
build	27-Nov-2025 17:19:40	(Found 8 errors + 2488 warnings) Copying resources to the output folder
build	27-Nov-2025 17:19:41	(Found 8 errors + 2488 warnings) Analyzing sources
build	27-Nov-2025 17:19:41	J2S buildStarting 293 files, contexts.size() = 2, isBatch=true
build	27-Nov-2025 17:19:41	(Found 8 errors + 2488 warnings) Compiling jalview/test/jalview/analysis
build	27-Nov-2025 17:19:42	(Found 8 errors + 2496 warnings) Compiling jalview/test/jalview/analysis
build	27-Nov-2025 17:19:42	(Found 8 errors + 2498 warnings) Compiling jalview/test/jalview/analysis
build	27-Nov-2025 17:19:42	(Found 8 errors + 2511 warnings) Compiling jalview/test/jalview/analysis
build	27-Nov-2025 17:19:42	(Found 8 errors + 2524 warnings) Compiling jalview/test/jalview/analysis
build	27-Nov-2025 17:19:42	(Found 8 errors + 2525 warnings) Compiling jalview/test/jalview/analysis
build	27-Nov-2025 17:19:42	(Found 8 errors + 2527 warnings) Compiling jalview/test/jalview/analysis
build	27-Nov-2025 17:19:42	(Found 8 errors + 2568 warnings) Compiling jalview/test/jalview/analysis
build	27-Nov-2025 17:19:42	(Found 8 errors + 2568 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	27-Nov-2025 17:19:42	(Found 8 errors + 2573 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	27-Nov-2025 17:19:42	(Found 8 errors + 2574 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	27-Nov-2025 17:19:42	(Found 8 errors + 2580 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	27-Nov-2025 17:19:42	(Found 8 errors + 2581 warnings) Compiling jalview/test/jalview/bin
build	27-Nov-2025 17:19:42	(Found 8 errors + 2582 warnings) Compiling jalview/test/jalview/bin
build	27-Nov-2025 17:19:42	(Found 8 errors + 2583 warnings) Compiling jalview/test/jalview/bin
build	27-Nov-2025 17:19:42	(Found 8 errors + 2586 warnings) Compiling jalview/test/jalview/bin/argparser
build	27-Nov-2025 17:19:42	(Found 8 errors + 2593 warnings) Compiling jalview/test/jalview/commands
build	27-Nov-2025 17:19:42	(Found 8 errors + 2594 warnings) Compiling jalview/test/jalview/controller
build	27-Nov-2025 17:19:42	(Found 8 errors + 2594 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2595 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2608 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2609 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2611 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2620 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2621 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2623 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2625 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2627 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2628 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2629 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2632 warnings) Compiling jalview/test/jalview/datamodel
build	27-Nov-2025 17:19:42	(Found 8 errors + 2633 warnings) Compiling jalview/test/jalview/datamodel/features
build	27-Nov-2025 17:19:42	(Found 8 errors + 2634 warnings) Compiling jalview/test/jalview/datamodel/features
build	27-Nov-2025 17:19:42	(Found 8 errors + 2634 warnings) Compiling jalview/test/jalview/ext/android
build	27-Nov-2025 17:19:42	(Found 8 errors + 2634 warnings) Compiling jalview/test/jalview/ext/ensembl
build	27-Nov-2025 17:19:42	(Found 8 errors + 2634 warnings) Compiling jalview/test/jalview/ext/htsjdk
build	27-Nov-2025 17:19:42	(Found 8 errors + 2635 warnings) Compiling jalview/test/jalview/ext/jmol
build	27-Nov-2025 17:19:42	(Found 8 errors + 2636 warnings) Compiling jalview/test/jalview/ext/jmol
build	27-Nov-2025 17:19:42	(Found 8 errors + 2636 warnings) Compiling jalview/test/jalview/ext/paradise
build	27-Nov-2025 17:19:42	(Found 8 errors + 2636 warnings) Compiling jalview/test/jalview/ext/pymol
build	27-Nov-2025 17:19:42	(Found 8 errors + 2636 warnings) Compiling jalview/test/jalview/ext/rbvi/chimera
build	27-Nov-2025 17:19:42	(Found 8 errors + 2636 warnings) Compiling jalview/test/jalview/ext/so
build	27-Nov-2025 17:19:42	(Found 8 errors + 2636 warnings) Compiling jalview/test/jalview/fts/core
build	27-Nov-2025 17:19:42	(Found 8 errors + 2637 warnings) Compiling jalview/test/jalview/fts/service/pdb
build	27-Nov-2025 17:19:42	(Found 8 errors + 2638 warnings) Compiling jalview/test/jalview/fts/service/pdb
build	27-Nov-2025 17:19:42	(Found 8 errors + 2645 warnings) Compiling jalview/test/jalview/fts/threedbeacons
build	27-Nov-2025 17:19:42	(Found 8 errors + 2650 warnings) Compiling jalview/test/jalview/fts/threedbeacons
build	27-Nov-2025 17:19:42	(Found 8 errors + 2650 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2651 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2653 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2654 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2674 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2699 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2700 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2703 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2704 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2706 warnings) Compiling jalview/test/jalview/gui
build	27-Nov-2025 17:19:42	(Found 8 errors + 2712 warnings) Compiling jalview/test/jalview/gui/structurechooser
build	27-Nov-2025 17:19:42	(Found 8 errors + 2713 warnings) Compiling jalview/test/jalview/io
build	27-Nov-2025 17:19:42	(Found 8 errors + 2717 warnings) Compiling jalview/test/jalview/io
build	27-Nov-2025 17:19:42	(Found 8 errors + 2721 warnings) Compiling jalview/test/jalview/io
build	27-Nov-2025 17:19:42	(Found 8 errors + 2725 warnings) Compiling jalview/test/jalview/io
build	27-Nov-2025 17:19:42	(Found 8 errors + 2727 warnings) Compiling jalview/test/jalview/io
build	27-Nov-2025 17:19:42	(Found 8 errors + 2728 warnings) Compiling jalview/test/jalview/io
build	27-Nov-2025 17:19:42	(Found 8 errors + 2734 warnings) Compiling jalview/test/jalview/io
build	27-Nov-2025 17:19:42	(Found 8 errors + 2736 warnings) Compiling jalview/test/jalview/io
build	27-Nov-2025 17:19:42	(Found 8 errors + 2736 warnings) Compiling jalview/test/jalview/io/cache
build	27-Nov-2025 17:19:42	(Found 8 errors + 2736 warnings) Compiling jalview/test/jalview/io/gff
build	27-Nov-2025 17:19:42	(Found 8 errors + 2737 warnings) Compiling jalview/test/jalview/io/gff
build	27-Nov-2025 17:19:42	(Found 8 errors + 2746 warnings) Compiling jalview/test/jalview/io/vcf
build	27-Nov-2025 17:19:42	(Found 8 errors + 2746 warnings) Compiling jalview/test/jalview/math
build	27-Nov-2025 17:19:42	(Found 8 errors + 2762 warnings) Compiling jalview/test/jalview/project
build	27-Nov-2025 17:19:42	(Found 8 errors + 2763 warnings) Compiling jalview/test/jalview/renderer
build	27-Nov-2025 17:19:42	(Found 8 errors + 2770 warnings) Compiling jalview/test/jalview/renderer
build	27-Nov-2025 17:19:42	(Found 8 errors + 2770 warnings) Compiling jalview/test/jalview/renderer/seqfeatures
build	27-Nov-2025 17:19:42	(Found 8 errors + 2770 warnings) Compiling jalview/test/jalview/schemes
build	27-Nov-2025 17:19:42	(Found 8 errors + 2770 warnings) Compiling jalview/test/jalview/structure
build	27-Nov-2025 17:19:42	(Found 8 errors + 2772 warnings) Compiling jalview/test/jalview/structure
build	27-Nov-2025 17:19:42	(Found 8 errors + 2773 warnings) Compiling jalview/test/jalview/structure
build	27-Nov-2025 17:19:42	(Found 8 errors + 2774 warnings) Compiling jalview/test/jalview/structure
build	27-Nov-2025 17:19:42	(Found 8 errors + 2777 warnings) Compiling jalview/test/jalview/structure
build	27-Nov-2025 17:19:42	(Found 8 errors + 2777 warnings) Compiling jalview/test/jalview/structures/models
build	27-Nov-2025 17:19:42	(Found 8 errors + 2778 warnings) Compiling jalview/test/jalview/urls
build	27-Nov-2025 17:19:42	(Found 8 errors + 2783 warnings) Compiling jalview/test/jalview/urls
build	27-Nov-2025 17:19:42	(Found 8 errors + 2788 warnings) Compiling jalview/test/jalview/urls
build	27-Nov-2025 17:19:42	(Found 8 errors + 2788 warnings) Compiling jalview/test/jalview/util
build	27-Nov-2025 17:19:42	(Found 8 errors + 2795 warnings) Compiling jalview/test/jalview/util
build	27-Nov-2025 17:19:42	(Found 8 errors + 2796 warnings) Compiling jalview/test/jalview/util
build	27-Nov-2025 17:19:42	(Found 8 errors + 2800 warnings) Compiling jalview/test/jalview/util
build	27-Nov-2025 17:19:42	(Found 8 errors + 2801 warnings) Compiling jalview/test/jalview/util
build	27-Nov-2025 17:19:42	(Found 8 errors + 2806 warnings) Compiling jalview/test/jalview/util
build	27-Nov-2025 17:19:43	(Found 8 errors + 2806 warnings) Compiling jalview/test/jalview/util/dialogrunner
build	27-Nov-2025 17:19:43	(Found 8 errors + 2806 warnings) Compiling jalview/test/jalview/util/imagemaker
build	27-Nov-2025 17:19:43	(Found 8 errors + 2806 warnings) Compiling jalview/test/jalview/util/matcher
build	27-Nov-2025 17:19:43	(Found 8 errors + 2809 warnings) Compiling jalview/test/jalview/util/matcher
build	27-Nov-2025 17:19:43	(Found 8 errors + 2809 warnings) Compiling jalview/test/jalview/viewmodel
build	27-Nov-2025 17:19:43	(Found 8 errors + 2811 warnings) Compiling jalview/test/jalview/viewmodel/styles
build	27-Nov-2025 17:19:43	(Found 8 errors + 2811 warnings) Compiling jalview/test/jalview/workers
build	27-Nov-2025 17:19:43	(Found 8 errors + 2811 warnings) Compiling jalview/test/jalview/ws
build	27-Nov-2025 17:19:43	(Found 8 errors + 2813 warnings) Compiling jalview/test/jalview/ws
build	27-Nov-2025 17:19:43	(Found 8 errors + 2816 warnings) Compiling jalview/test/jalview/ws/dbsources
build	27-Nov-2025 17:19:43	(Found 8 errors + 2817 warnings) Compiling jalview/test/jalview/ws/dbsources
build	27-Nov-2025 17:19:43	(Found 8 errors + 2817 warnings) Compiling jalview/test/jalview/ws/ebi
build	27-Nov-2025 17:19:43	(Found 8 errors + 2824 warnings) Compiling jalview/test/jalview/ws/gui
build	27-Nov-2025 17:19:43	(Found 8 errors + 2824 warnings) Compiling jalview/test/jalview/ws/jabaws
build	27-Nov-2025 17:19:43	(Found 8 errors + 2825 warnings) Compiling jalview/test/jalview/ws/jabaws
build	27-Nov-2025 17:19:43	(Found 8 errors + 2826 warnings) Compiling jalview/test/jalview/ws/jabaws
build	27-Nov-2025 17:19:43	(Found 8 errors + 2830 warnings) Compiling jalview/test/jalview/ws/jabaws
build	27-Nov-2025 17:19:43	(Found 8 errors + 2845 warnings) Compiling jalview/test/jalview/ws/jws2
build	27-Nov-2025 17:19:43	(Found 8 errors + 2845 warnings) Compiling jalview/test/jalview/ws/rest
build	27-Nov-2025 17:19:43	(Found 8 errors + 2846 warnings) Compiling jalview/test/jalview/ws/rest
build	27-Nov-2025 17:19:43	(Found 8 errors + 2846 warnings) Compiling jalview/test/jalview/ws/seqfetcher
build	27-Nov-2025 17:19:43	(Found 8 errors + 2847 warnings) Compiling jalview/test/jalview/ws/sifts
build	27-Nov-2025 17:19:43	(Found 8 errors + 2849 warnings) Compiling jalview/test/jalview/ws/utils
build	27-Nov-2025 17:19:43	(Found 8 errors + 2865 warnings) Compiling jalview/test/junit/extensions
build	27-Nov-2025 17:19:43	(Found 8 errors + 2867 warnings) Compiling jalview/test/junit/extensions
build	27-Nov-2025 17:19:43	(Found 8 errors + 2867 warnings) Compiling jalview/test/mc_view
build	27-Nov-2025 17:19:43	(Found 8 errors + 2868 warnings) Compiling jalview/test/mc_view
build	27-Nov-2025 17:19:43	J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.j2s
build	27-Nov-2025 17:19:43	j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename
build	27-Nov-2025 17:19:43	J2S System.getProperty("org.jalview.jalviewjsj2sfilename") = ./build/jalviewjs/config/j2s
build	27-Nov-2025 17:19:43	J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/config/j2s
build	27-Nov-2025 17:19:43	j2s.compiler.status = enable
build	27-Nov-2025 17:19:43	j2s.compiler.java.version = 8
build	27-Nov-2025 17:19:43	J2S compiler version set to 8
build	27-Nov-2025 17:19:43	j2s.break.on.error = false
build	27-Nov-2025 17:19:43	j2s.exact.long = true
build	27-Nov-2025 17:19:43	j2s.async.thread = false
build	27-Nov-2025 17:19:43	j2s.compiler.mode = nodebug
build	27-Nov-2025 17:19:43	j2s.site.directory = ./build/jalviewjs/tmp/site_js
build	27-Nov-2025 17:19:43	J2S writing to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s
build	27-Nov-2025 17:19:43	j2s.log.methods.declared = <no log file>
build	27-Nov-2025 17:19:43	j2s.log.methods.called = <no log file>
build	27-Nov-2025 17:19:43	j2s.excluded.paths = test;testng;util
build	27-Nov-2025 17:19:43	j2s.compiler.read.annotations = true
build	27-Nov-2025 17:19:43	j2s.compiler.ignored.annotations = CallerSensitive;ConstructorProperties;Deprecated;Override;SafeVarargs;SuppressWarnings;FunctionalInterface;Documented;Inherited;Native;Repeatable;Retention;
build	27-Nov-2025 17:19:43	j2s.testing = false
build	27-Nov-2025 17:19:43	j2s.compiler.nonqualified.packages = <none>
build	27-Nov-2025 17:19:43	j2s.compiler.nonqualified.classes = <none>
build	27-Nov-2025 17:19:43	j2s.class.replacements = <none>
build	27-Nov-2025 17:19:43	j2s.template.html = utils/jalviewjs/template.html
build	27-Nov-2025 17:19:43	J2S using HTML template /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/utils/jalviewjs/template.html
build	27-Nov-2025 17:19:43	J2S building JavaScript jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Thu Nov 27 17:19:43 GMT 2025
build	27-Nov-2025 17:19:43	J2S building JavaScript for 1107 files
build	27-Nov-2025 17:19:43	J2S transpiling (1/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/github/reinert/jjschema/Attributes.java
build	27-Nov-2025 17:19:44	j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/com
build	27-Nov-2025 17:19:44	J2S transpiling (2/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/AmpersandRule.java
build	27-Nov-2025 17:19:44	J2S transpiling (3/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Any.java
build	27-Nov-2025 17:19:44	J2S transpiling (4/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/BackG.java
build	27-Nov-2025 17:19:44	J2S transpiling (5/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/BackMatch.java
build	27-Nov-2025 17:19:44	J2S transpiling (6/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/BackRefRule.java
build	27-Nov-2025 17:19:44	J2S transpiling (7/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Backup.java
build	27-Nov-2025 17:19:44	J2S transpiling (8/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/BasicStringBufferLike.java
build	27-Nov-2025 17:19:44	J2S transpiling (9/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Bits.java
build	27-Nov-2025 17:19:44	J2S transpiling (10/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Boundary.java
build	27-Nov-2025 17:19:44	J2S transpiling (11/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Bracket.java
build	27-Nov-2025 17:19:44	J2S transpiling (12/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/CaseMgr.java
build	27-Nov-2025 17:19:44	J2S transpiling (13/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/ChangeRule.java
build	27-Nov-2025 17:19:44	J2S transpiling (14/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/CodeRule.java
build	27-Nov-2025 17:19:44	J2S transpiling (15/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Ctrl.java
build	27-Nov-2025 17:19:44	J2S transpiling (16/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Custom.java
build	27-Nov-2025 17:19:44	J2S transpiling (17/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/CustomEndpoint.java
build	27-Nov-2025 17:19:44	J2S transpiling (18/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/DirFileRegex.java
build	27-Nov-2025 17:19:44	J2S transpiling (19/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/DotMulti.java
build	27-Nov-2025 17:19:44	J2S transpiling (20/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/End.java
build	27-Nov-2025 17:19:44	J2S transpiling (21/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/FastBracket.java
build	27-Nov-2025 17:19:44	J2S transpiling (22/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/FastMulti.java
build	27-Nov-2025 17:19:44	J2S transpiling (23/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/FileRegex.java
build	27-Nov-2025 17:19:44	J2S transpiling (24/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Group.java
build	27-Nov-2025 17:19:44	J2S transpiling (25/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/LeftRule.java
build	27-Nov-2025 17:19:44	J2S transpiling (26/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Multi.java
build	27-Nov-2025 17:19:44	J2S transpiling (27/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/MultiMin.java
build	27-Nov-2025 17:19:45	J2S transpiling (28/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Multi_stage2.java
build	27-Nov-2025 17:19:45	J2S transpiling (29/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NoPattern.java
build	27-Nov-2025 17:19:45	J2S transpiling (30/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NonDirFileRegex.java
build	27-Nov-2025 17:19:45	J2S transpiling (31/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NotImplementedError.java
build	27-Nov-2025 17:19:45	J2S transpiling (32/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NullPattern.java
build	27-Nov-2025 17:19:45	J2S transpiling (33/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/NullRule.java
build	27-Nov-2025 17:19:45	J2S transpiling (34/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Or.java
build	27-Nov-2025 17:19:45	J2S transpiling (35/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/OrMark.java
build	27-Nov-2025 17:19:45	J2S transpiling (36/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/PartialBuffer.java
build	27-Nov-2025 17:19:45	J2S transpiling (37/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Pattern.java
build	27-Nov-2025 17:19:45	J2S transpiling (38/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/PatternSub.java
build	27-Nov-2025 17:19:45	J2S transpiling (39/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/PopRule.java
build	27-Nov-2025 17:19:45	J2S transpiling (40/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Prop.java
build	27-Nov-2025 17:19:45	J2S transpiling (41/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Pthings.java
build	27-Nov-2025 17:19:45	J2S transpiling (42/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/PushRule.java
build	27-Nov-2025 17:19:45	J2S transpiling (43/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RBuffer.java
build	27-Nov-2025 17:19:45	J2S transpiling (44/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Range.java
build	27-Nov-2025 17:19:45	J2S transpiling (45/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegOpt.java
build	27-Nov-2025 17:19:45	J2S transpiling (46/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegRes.java
build	27-Nov-2025 17:19:45	J2S transpiling (47/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegSyntax.java
build	27-Nov-2025 17:19:45	J2S transpiling (48/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegSyntaxError.java
build	27-Nov-2025 17:19:45	J2S transpiling (49/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Regex.java
build	27-Nov-2025 17:19:45	J2S transpiling (50/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegexReader.java
build	27-Nov-2025 17:19:45	J2S transpiling (51/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegexTokenizer.java
build	27-Nov-2025 17:19:45	J2S transpiling (52/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RegexWriter.java
build	27-Nov-2025 17:19:45	>>>main found for com.stevesoft.pat.RegexWriter
build	27-Nov-2025 17:19:45	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/com_stevesoft_pat_RegexWriter.html
build	27-Nov-2025 17:19:45	J2S transpiling (53/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/ReplaceRule.java
build	27-Nov-2025 17:19:45	J2S transpiling (54/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Replacer.java
build	27-Nov-2025 17:19:45	J2S transpiling (55/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RightRule.java
build	27-Nov-2025 17:19:45	J2S transpiling (56/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Rthings.java
build	27-Nov-2025 17:19:45	J2S transpiling (57/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/RuleHolder.java
build	27-Nov-2025 17:19:45	J2S transpiling (58/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Skip.java
build	27-Nov-2025 17:19:45	J2S transpiling (59/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Skip2.java
build	27-Nov-2025 17:19:45	J2S transpiling (60/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/SkipBMH.java
build	27-Nov-2025 17:19:45	J2S transpiling (61/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Skipped.java
build	27-Nov-2025 17:19:45	J2S transpiling (62/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/SpecialRule.java
build	27-Nov-2025 17:19:45	J2S transpiling (63/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Start.java
build	27-Nov-2025 17:19:45	J2S transpiling (64/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/StrPos.java
build	27-Nov-2025 17:19:45	J2S transpiling (65/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/StringBufferLike.java
build	27-Nov-2025 17:19:45	J2S transpiling (66/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/StringLike.java
build	27-Nov-2025 17:19:45	J2S transpiling (67/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/StringRule.java
build	27-Nov-2025 17:19:46	J2S transpiling (68/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/SubMark.java
build	27-Nov-2025 17:19:46	J2S transpiling (69/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/TransPat.java
build	27-Nov-2025 17:19:46	J2S transpiling (70/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Transformer.java
build	27-Nov-2025 17:19:46	J2S transpiling (71/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/UniValidator.java
build	27-Nov-2025 17:19:46	J2S transpiling (72/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/com/stevesoft/pat/Validator.java
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build	27-Nov-2025 17:19:49	J2S transpiling (176/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/OOMHandlerI.java
build	27-Nov-2025 17:19:49	J2S transpiling (177/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/RendererListenerI.java
build	27-Nov-2025 17:19:49	J2S transpiling (178/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/RotatableCanvasI.java
build	27-Nov-2025 17:19:49	J2S transpiling (179/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/SequenceRenderer.java
build	27-Nov-2025 17:19:49	J2S transpiling (180/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/SequenceStructureBinding.java
build	27-Nov-2025 17:19:49	J2S transpiling (181/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/SiftsClientI.java
build	27-Nov-2025 17:19:49	J2S transpiling (182/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/SplitContainerI.java
build	27-Nov-2025 17:19:49	J2S transpiling (183/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/StructureSelectionManagerProvider.java
build	27-Nov-2025 17:19:49	J2S transpiling (184/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/ViewStyleI.java
build	27-Nov-2025 17:19:49	J2S transpiling (185/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/analysis/PairwiseScoreModelI.java
build	27-Nov-2025 17:19:49	J2S transpiling (186/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/analysis/ScoreModelI.java
build	27-Nov-2025 17:19:49	J2S transpiling (187/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/analysis/SimilarityParamsI.java
build	27-Nov-2025 17:19:49	J2S transpiling (188/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/api/structures/JalviewStructureDisplayI.java
build	27-Nov-2025 17:19:49	J2S transpiling (189/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/APopupMenu.java
build	27-Nov-2025 17:19:50	J2S transpiling (190/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AlignFrame.java
build	27-Nov-2025 17:19:51	J2S transpiling (191/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AlignViewport.java
build	27-Nov-2025 17:19:51	J2S transpiling (192/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AlignmentPanel.java
build	27-Nov-2025 17:19:51	J2S transpiling (193/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationColourChooser.java
build	27-Nov-2025 17:19:51	J2S transpiling (194/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationColumnChooser.java
build	27-Nov-2025 17:19:51	J2S transpiling (195/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationLabels.java
build	27-Nov-2025 17:19:51	J2S transpiling (196/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationPanel.java
build	27-Nov-2025 17:19:51	J2S transpiling (197/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AnnotationRowFilter.java
build	27-Nov-2025 17:19:51	J2S transpiling (198/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AppletJmol.java
build	27-Nov-2025 17:19:51	J2S transpiling (199/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/AppletJmolBinding.java
build	27-Nov-2025 17:19:51	J2S transpiling (200/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/CutAndPasteTransfer.java
build	27-Nov-2025 17:19:51	J2S transpiling (201/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/EditNameDialog.java
build	27-Nov-2025 17:19:51	J2S transpiling (202/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/EmbmenuFrame.java
build	27-Nov-2025 17:19:51	J2S transpiling (203/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/ExtJmol.java
build	27-Nov-2025 17:19:51	J2S transpiling (204/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/FeatureColourChooser.java
build	27-Nov-2025 17:19:51	J2S transpiling (205/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/FeatureRenderer.java
build	27-Nov-2025 17:19:51	J2S transpiling (206/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/FeatureSettings.java
build	27-Nov-2025 17:19:51	J2S transpiling (207/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/Finder.java
build	27-Nov-2025 17:19:51	J2S transpiling (208/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/FontChooser.java
build	27-Nov-2025 17:19:51	J2S transpiling (209/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/IdCanvas.java
build	27-Nov-2025 17:19:51	J2S transpiling (210/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/IdPanel.java
build	27-Nov-2025 17:19:51	J2S transpiling (211/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/IdwidthAdjuster.java
build	27-Nov-2025 17:19:51	J2S transpiling (212/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/JVDialog.java
build	27-Nov-2025 17:19:51	J2S transpiling (213/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/OverviewCanvas.java
build	27-Nov-2025 17:19:51	>>class jalview.appletgui.OverviewCanvas extended java.awt.Component now extends java.awt.Label
build	27-Nov-2025 17:19:51	J2S transpiling (214/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/OverviewPanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (215/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/PCAPanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (216/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/PaintRefresher.java
build	27-Nov-2025 17:19:53	J2S transpiling (217/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/PairwiseAlignPanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (218/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/RedundancyPanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (219/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/RotatableCanvas.java
build	27-Nov-2025 17:19:53	J2S transpiling (220/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/ScalePanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (221/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SeqCanvas.java
build	27-Nov-2025 17:19:53	J2S transpiling (222/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SeqPanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (223/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SequenceRenderer.java
build	27-Nov-2025 17:19:53	J2S transpiling (224/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SliderPanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (225/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/SplitFrame.java
build	27-Nov-2025 17:19:53	J2S transpiling (226/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/TitledPanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (227/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/Tooltip.java
build	27-Nov-2025 17:19:53	J2S transpiling (228/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/TreeCanvas.java
build	27-Nov-2025 17:19:53	J2S transpiling (229/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/TreePanel.java
build	27-Nov-2025 17:19:53	J2S transpiling (230/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/appletgui/UserDefinedColours.java
build	27-Nov-2025 17:19:53	J2S transpiling (231/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/ArgsParser.java
build	27-Nov-2025 17:19:53	J2S transpiling (232/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/BuildDetails.java
build	27-Nov-2025 17:19:53	J2S transpiling (233/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Cache.java
build	27-Nov-2025 17:19:53	J2S transpiling (234/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Commands.java
build	27-Nov-2025 17:19:53	J2S transpiling (235/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Console.java
build	27-Nov-2025 17:19:53	J2S transpiling (236/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/GetMemory.java
build	27-Nov-2025 17:19:53	J2S transpiling (237/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/GetdownLauncherUpdate.java
build	27-Nov-2025 17:19:53	>>>main found for jalview.bin.GetdownLauncherUpdate
build	27-Nov-2025 17:19:53	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_GetdownLauncherUpdate.html
build	27-Nov-2025 17:19:53	J2S transpiling (238/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/HiDPISetting.java
build	27-Nov-2025 17:19:53	J2S transpiling (239/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Jalview.java
build	27-Nov-2025 17:19:53	>>>main found for jalview.bin.Jalview
build	27-Nov-2025 17:19:53	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_Jalview.html
build	27-Nov-2025 17:19:53	J2S transpiling (240/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/JalviewJS2.java
build	27-Nov-2025 17:19:53	>>>main found for jalview.bin.JalviewJS2
build	27-Nov-2025 17:19:53	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewJS2.html
build	27-Nov-2025 17:19:53	J2S transpiling (241/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/JalviewLite.java
build	27-Nov-2025 17:19:53	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewLite_applet.html
build	27-Nov-2025 17:19:53	J2S transpiling (242/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/JalviewLiteURLRetrieve.java
build	27-Nov-2025 17:19:53	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewLiteURLRetrieve_applet.html
build	27-Nov-2025 17:19:53	J2S transpiling (243/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/JalviewTaskbar.java
build	27-Nov-2025 17:19:53	J2S transpiling (244/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/Launcher.java
build	27-Nov-2025 17:19:53	>>>main found for jalview.bin.Launcher
build	27-Nov-2025 17:19:53	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_Launcher.html
build	27-Nov-2025 17:19:53	J2S transpiling (245/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/MemorySetting.java
build	27-Nov-2025 17:19:53	J2S transpiling (246/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/ScreenInfo.java
build	27-Nov-2025 17:19:53	J2S transpiling (247/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/Arg.java
build	27-Nov-2025 17:19:54	J2S transpiling (248/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/ArgParser.java
build	27-Nov-2025 17:19:54	J2S transpiling (249/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/ArgValue.java
build	27-Nov-2025 17:19:54	J2S transpiling (250/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/ArgValues.java
build	27-Nov-2025 17:19:54	J2S transpiling (251/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/ArgValuesMap.java
build	27-Nov-2025 17:19:54	J2S transpiling (252/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/BootstrapArgs.java
build	27-Nov-2025 17:19:54	J2S transpiling (253/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/StructureLine.java
build	27-Nov-2025 17:19:54	J2S transpiling (254/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/StructuresFile.java
build	27-Nov-2025 17:19:54	J2S transpiling (255/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/argparser/SubVals.java
build	27-Nov-2025 17:19:54	J2S transpiling (256/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/groovy/JalviewObject.java
build	27-Nov-2025 17:19:54	J2S transpiling (257/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/bin/groovy/JalviewObjectI.java
build	27-Nov-2025 17:19:54	J2S transpiling (258/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/ChangeCaseCommand.java
build	27-Nov-2025 17:19:54	J2S transpiling (259/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/CommandI.java
build	27-Nov-2025 17:19:54	J2S transpiling (260/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/EditCommand.java
build	27-Nov-2025 17:19:54	J2S transpiling (261/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/JustifyLeftOrRightCommand.java
build	27-Nov-2025 17:19:54	J2S transpiling (262/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/OrderCommand.java
build	27-Nov-2025 17:19:55	J2S transpiling (263/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/RemoveGapColCommand.java
build	27-Nov-2025 17:19:55	J2S transpiling (264/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/RemoveGapsCommand.java
build	27-Nov-2025 17:19:55	J2S transpiling (265/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/SlideSequencesCommand.java
build	27-Nov-2025 17:19:55	J2S transpiling (266/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/commands/TrimRegionCommand.java
build	27-Nov-2025 17:19:55	J2S transpiling (267/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/controller/AlignViewController.java
build	27-Nov-2025 17:19:55	J2S transpiling (268/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/controller/FeatureSettingsController.java
build	27-Nov-2025 17:19:55	J2S transpiling (269/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/controller/FeatureSettingsControllerGuiI.java
build	27-Nov-2025 17:19:55	J2S transpiling (270/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ASequence.java
build	27-Nov-2025 17:19:55	J2S transpiling (271/1107) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/src/jalview/datamodel/ASequenceI.java
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build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/structures/models/AAStructureBindingModelTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/urls/AppletUrlProviderFactoryTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/urls/CustomUrlProviderTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/urls/DesktopUrlProviderFactoryTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/urls/IdentifiersUrlProviderTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/urls/UrlLinkDisplayTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/urls/UrlLinkTableModelTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/urls/UrlProviderTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ArrayUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/CaseInsensitiveStringTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ColorUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ComparisonTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/DBRefUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/DnaUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/FileUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/FormatTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/HttpUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ImageMakerTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/JSONUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/LaunchUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/Log4jTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/MapListTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/MappingUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/MathUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/MessageManagerTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ParseHtmlBodyAndLinksTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/PlatformTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/QuickSortTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/SetUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/ShiftListTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/SparseCountTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/StringUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/UrlLinkTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/dialogrunner/DialogRunnerTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/imagemaker/BitmapImageSizeTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/matcher/ConditionTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/util/matcher/MatcherTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/viewmodel/OverviewDimensionsHideHiddenTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/viewmodel/OverviewDimensionsShowHiddenTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/viewmodel/ViewportRangesTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/viewmodel/styles/ViewStyleTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/workers/AlignCalcManagerTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/PDBSequenceFetcherTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/SequenceFetcherTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/EmblXmlSourceTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/PfamFullTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/PfamSeedTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/RemoteFormatTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/RfamFullTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/RfamSeedTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/UniprotTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/dbsources/XfamFetcherTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/ebi/EBIFetchClientTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/gui/Jws2ParamView.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jabaws/MinJabawsClientTests.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jabaws/RNAStructExportImport.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/jws2/ParameterUtilsTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/rest/RestClientTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/rest/ShmmrRSBSService.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/sifts/SiftsClientTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/jalview/ws/utils/UrlDownloadClientTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/junit/extensions/PA.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/junit/extensions/PrivilegedAccessor.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/AtomTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/BondTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/PDBChainTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/PDBfileTest.java
build	27-Nov-2025 17:20:16	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/test/mc_view/ResidueTest.java
build	27-Nov-2025 17:20:16	J2S processed 1107 .java files, created 1138 .js files and 7 .html files, copied 6 resources
build	27-Nov-2025 17:20:16	J2S buildFinished 1107 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1
build	27-Nov-2025 17:20:16	J2S buildFinished nerror = 0 Thu Nov 27 17:20:16 GMT 2025
build	27-Nov-2025 17:20:16	(Found 8 errors + 2868 warnings) Build done
build	27-Nov-2025 17:20:16	Invoking 'Gradle Project Builder' on '/jalview'.
build	27-Nov-2025 17:20:33	
build	27-Nov-2025 17:20:33	> Configure project :
build	27-Nov-2025 17:20:33	Using properties from file './utils/channels/default/channel_gradle.properties'
build	27-Nov-2025 17:20:33	JALVIEW_VERSION is set to '2.11.5.1'
build	27-Nov-2025 17:20:34	Setting IN_ECLIPSE to false as System.properties['net.sf.j2s.core.headlessbuild'] == 'true'
build	27-Nov-2025 17:20:34	HEADLESS BUILD
build	27-Nov-2025 17:20:34	J2S ENABLED
build	27-Nov-2025 17:20:34	Using a LOCAL profile.
build	27-Nov-2025 17:20:35	eclipseDir exists
build	27-Nov-2025 17:20:35	
build	27-Nov-2025 17:20:35	> Task :nothing UP-TO-DATE
build	27-Nov-2025 17:20:36	
build	27-Nov-2025 17:20:36	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	27-Nov-2025 17:20:36	
build	27-Nov-2025 17:20:36	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	27-Nov-2025 17:20:36	
build	27-Nov-2025 17:20:36	See https://docs.gradle.org/7.6.4/userguide/command_line_interface.html#sec:command_line_warnings
build	27-Nov-2025 17:20:36	
build	27-Nov-2025 17:20:36	BUILD SUCCESSFUL in 19s
build	27-Nov-2025 17:20:37	Invalidating in-memory cache of /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/buildOutputCleanup/outputFiles.bin
build	27-Nov-2025 17:20:37	:jalviewjsTranspile (Thread[Execution worker for ':',5,main]) completed. Took 1 mins 22.417 secs.
build	27-Nov-2025 17:20:37	:jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:37	
build	27-Nov-2025 17:20:37	> Task :jalviewjsCopyTransferSiteJs
build	27-Nov-2025 17:20:37	Caching disabled for task ':jalviewjsCopyTransferSiteJs' because:
build	27-Nov-2025 17:20:37	  Build cache is disabled
build	27-Nov-2025 17:20:37	Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because:
build	27-Nov-2025 17:20:37	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site has been removed.
build	27-Nov-2025 17:20:37	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed.
build	27-Nov-2025 17:20:37	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_GetdownLauncherUpdate.html has been removed.
build	27-Nov-2025 17:20:37	:jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) completed. Took 0.271 secs.
build	27-Nov-2025 17:20:37	:jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:38	
build	27-Nov-2025 17:20:38	> Task :jalviewjsTransferUnzipLib
build	27-Nov-2025 17:20:38	Caching disabled for task ':jalviewjsTransferUnzipLib' because:
build	27-Nov-2025 17:20:38	  Build cache is disabled
build	27-Nov-2025 17:20:38	Task ':jalviewjsTransferUnzipLib' is not up-to-date because:
build	27-Nov-2025 17:20:38	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_lib has been removed.
build	27-Nov-2025 17:20:38	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_AlignmentDemo.html has been removed.
build	27-Nov-2025 17:20:38	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_fragseq_FragSeqGUI.html has been removed.
build	27-Nov-2025 17:20:38	:jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) completed. Took 0.448 secs.
build	27-Nov-2025 17:20:38	:jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:39	
build	27-Nov-2025 17:20:39	> Task :jalviewjsTransferUnzipSwingJs
build	27-Nov-2025 17:20:39	Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because:
build	27-Nov-2025 17:20:39	  Build cache is disabled
build	27-Nov-2025 17:20:39	Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because:
build	27-Nov-2025 17:20:39	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_swingjs has been removed.
build	27-Nov-2025 17:20:39	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_swingjs/___j2sflags.htm has been removed.
build	27-Nov-2025 17:20:39	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_swingjs/debug.log has been removed.
build	27-Nov-2025 17:20:39	:jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) completed. Took 1.301 secs.
build	27-Nov-2025 17:20:39	:jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:39	
build	27-Nov-2025 17:20:39	> Task :jalviewjsTransferUnzipAllLibs
build	27-Nov-2025 17:20:39	Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions.
build	27-Nov-2025 17:20:39	:jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:20:39	:jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:40	
build	27-Nov-2025 17:20:40	> Task :jalviewjsSyncAllLibs
build	27-Nov-2025 17:20:40	Caching disabled for task ':jalviewjsSyncAllLibs' because:
build	27-Nov-2025 17:20:40	  Build cache is disabled
build	27-Nov-2025 17:20:40	Task ':jalviewjsSyncAllLibs' is not up-to-date because:
build	27-Nov-2025 17:20:40	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CDL.js has changed.
build	27-Nov-2025 17:20:40	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/Cookie.js has changed.
build	27-Nov-2025 17:20:40	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CookieList.js has changed.
build	27-Nov-2025 17:20:40	:jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 1.581 secs.
build	27-Nov-2025 17:20:40	:copyResources (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:40	
build	27-Nov-2025 17:20:40	> Task :copyResources
build	27-Nov-2025 17:20:40	Caching disabled for task ':copyResources' because:
build	27-Nov-2025 17:20:40	  Build cache is disabled
build	27-Nov-2025 17:20:40	Task ':copyResources' is not up-to-date because:
build	27-Nov-2025 17:20:40	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build has been removed.
build	27-Nov-2025 17:20:40	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build/AmbiguityCodes.dat has been removed.
build	27-Nov-2025 17:20:40	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build/authors.props has been removed.
build	27-Nov-2025 17:20:40	:copyResources (Thread[Execution worker for ':',5,main]) completed. Took 0.061 secs.
build	27-Nov-2025 17:20:40	:createBuildProperties (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:40	
build	27-Nov-2025 17:20:40	> Task :createBuildProperties
build	27-Nov-2025 17:20:40	Caching disabled for task ':createBuildProperties' because:
build	27-Nov-2025 17:20:40	  Build cache is disabled
build	27-Nov-2025 17:20:40	Task ':createBuildProperties' is not up-to-date because:
build	27-Nov-2025 17:20:40	  Value of input property 'comment' has changed for task ':createBuildProperties'
build	27-Nov-2025 17:20:40	  Value of input property 'properties' has changed for task ':createBuildProperties'
build	27-Nov-2025 17:20:40	:createBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.006 secs.
build	27-Nov-2025 17:20:40	:jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:40	
build	27-Nov-2025 17:20:40	> Task :jalviewjsSyncBuildProperties
build	27-Nov-2025 17:20:40	Caching disabled for task ':jalviewjsSyncBuildProperties' because:
build	27-Nov-2025 17:20:40	  Build cache is disabled
build	27-Nov-2025 17:20:40	Task ':jalviewjsSyncBuildProperties' is not up-to-date because:
build	27-Nov-2025 17:20:40	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed.
build	27-Nov-2025 17:20:40	:jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.118 secs.
build	27-Nov-2025 17:20:40	:jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:20:42	
build	27-Nov-2025 17:20:42	> Task :jalviewjsBuildAllCores
build	27-Nov-2025 17:20:42	Execution optimizations have been disabled for task ':jalviewjsBuildAllCores' to ensure correctness due to the following reasons:
build	27-Nov-2025 17:20:42	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_lib/swingjs/j2s'. Reason: Task ':jalviewjsBuildAllCores' uses this output of task ':jalviewjsTransferUnzipLib' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	27-Nov-2025 17:20:42	Invalidating VFS because task ':jalviewjsBuildAllCores' failed validation
build	27-Nov-2025 17:20:42	Caching disabled for task ':jalviewjsBuildAllCores' because:
build	27-Nov-2025 17:20:42	  Build cache is disabled
build	27-Nov-2025 17:20:42	Task ':jalviewjsBuildAllCores' is not up-to-date because:
build	27-Nov-2025 17:20:42	  Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build	27-Nov-2025 17:20:42	Creating core for jalview...
build	27-Nov-2025 17:20:42	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js
build	27-Nov-2025 17:20:42	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js
build	27-Nov-2025 17:20:42	
build	27-Nov-2025 17:20:42	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js'
build	27-Nov-2025 17:20:42	
build	27-Nov-2025 17:20:42	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js
build	27-Nov-2025 17:20:42	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	27-Nov-2025 17:20:54	--
build	27-Nov-2025 17:20:54	Creating core for jvexamplefile...
build	27-Nov-2025 17:20:54	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js
build	27-Nov-2025 17:20:54	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js
build	27-Nov-2025 17:20:54	
build	27-Nov-2025 17:20:54	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js'
build	27-Nov-2025 17:20:54	
build	27-Nov-2025 17:20:54	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js
build	27-Nov-2025 17:20:54	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	27-Nov-2025 17:20:58	--
build	27-Nov-2025 17:20:58	Creating core for _jalview...
build	27-Nov-2025 17:20:58	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js
build	27-Nov-2025 17:20:58	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js
build	27-Nov-2025 17:20:58	
build	27-Nov-2025 17:20:58	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js'
build	27-Nov-2025 17:20:58	
build	27-Nov-2025 17:20:58	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js
build	27-Nov-2025 17:20:58	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	27-Nov-2025 17:20:59	--
build	27-Nov-2025 17:20:59	Creating core for _stevesoft...
build	27-Nov-2025 17:20:59	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js
build	27-Nov-2025 17:20:59	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js
build	27-Nov-2025 17:20:59	
build	27-Nov-2025 17:20:59	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js'
build	27-Nov-2025 17:20:59	
build	27-Nov-2025 17:20:59	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js
build	27-Nov-2025 17:20:59	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	27-Nov-2025 17:21:03	--
build	27-Nov-2025 17:21:03	:jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) completed. Took 22.375 secs.
build	27-Nov-2025 17:21:03	:jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:03	
build	27-Nov-2025 17:21:03	> Task :jalviewjsPublishCoreTemplates
build	27-Nov-2025 17:21:03	Caching disabled for task ':jalviewjsPublishCoreTemplates' because:
build	27-Nov-2025 17:21:03	  Build cache is disabled
build	27-Nov-2025 17:21:03	Task ':jalviewjsPublishCoreTemplates' is not up-to-date because:
build	27-Nov-2025 17:21:03	  Output property '$1$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jalview.html has been removed.
build	27-Nov-2025 17:21:03	  Output property '$1$2' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jvexamplefile.html has been removed.
build	27-Nov-2025 17:21:03	  Output property '$1$3' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/tmp/site_core/JalviewJS__jalview.html has been removed.
build	27-Nov-2025 17:21:03	:jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) completed. Took 0.019 secs.
build	27-Nov-2025 17:21:03	:jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:03	
build	27-Nov-2025 17:21:03	> Task :jalviewjsSyncCore
build	27-Nov-2025 17:21:03	Caching disabled for task ':jalviewjsSyncCore' because:
build	27-Nov-2025 17:21:03	  Build cache is disabled
build	27-Nov-2025 17:21:03	Task ':jalviewjsSyncCore' is not up-to-date because:
build	27-Nov-2025 17:21:03	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/JalviewJS__jalview.html has been removed.
build	27-Nov-2025 17:21:03	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/JalviewJS__stevesoft.html has been removed.
build	27-Nov-2025 17:21:03	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/JalviewJS_jalview.html has been removed.
build	27-Nov-2025 17:21:03	:jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) completed. Took 0.263 secs.
build	27-Nov-2025 17:21:03	:copyChannelResources (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:03	
build	27-Nov-2025 17:21:03	> Task :copyChannelResources
build	27-Nov-2025 17:21:03	Execution optimizations have been disabled for task ':copyChannelResources' to ensure correctness due to the following reasons:
build	27-Nov-2025 17:21:03	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	27-Nov-2025 17:21:03	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/resources/resources_build'. Reason: Task ':jalviewjsSyncBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	27-Nov-2025 17:21:03	Invalidating VFS because task ':copyChannelResources' failed validation
build	27-Nov-2025 17:21:03	Caching disabled for task ':copyChannelResources' because:
build	27-Nov-2025 17:21:03	  Build cache is disabled
build	27-Nov-2025 17:21:03	Task ':copyChannelResources' is not up-to-date because:
build	27-Nov-2025 17:21:03	  Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build	27-Nov-2025 17:21:03	:copyChannelResources (Thread[Execution worker for ':',5,main]) completed. Took 0.009 secs.
build	27-Nov-2025 17:21:03	:buildResources (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:03	
build	27-Nov-2025 17:21:03	> Task :buildResources
build	27-Nov-2025 17:21:03	Skipping task ':buildResources' as it has no actions.
build	27-Nov-2025 17:21:03	:buildResources (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:21:03	:jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:03	
build	27-Nov-2025 17:21:03	> Task :jalviewjsSyncResources
build	27-Nov-2025 17:21:03	Caching disabled for task ':jalviewjsSyncResources' because:
build	27-Nov-2025 17:21:03	  Build cache is disabled
build	27-Nov-2025 17:21:03	Task ':jalviewjsSyncResources' is not up-to-date because:
build	27-Nov-2025 17:21:03	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has changed.
build	27-Nov-2025 17:21:03	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/AmbiguityCodes.dat has been removed.
build	27-Nov-2025 17:21:03	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/j2s/authors.props has been removed.
build	27-Nov-2025 17:21:03	:jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) completed. Took 0.158 secs.
build	27-Nov-2025 17:21:03	:jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:04	
build	27-Nov-2025 17:21:04	> Task :jalviewjsSyncSiteResources
build	27-Nov-2025 17:21:04	Caching disabled for task ':jalviewjsSyncSiteResources' because:
build	27-Nov-2025 17:21:04	  Build cache is disabled
build	27-Nov-2025 17:21:04	Task ':jalviewjsSyncSiteResources' is not up-to-date because:
build	27-Nov-2025 17:21:04	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_JalviewJS2.html has changed.
build	27-Nov-2025 17:21:04	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/applets-nocore.html has been removed.
build	27-Nov-2025 17:21:04	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/applets.html has been removed.
build	27-Nov-2025 17:21:04	:jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) completed. Took 0.177 secs.
build	27-Nov-2025 17:21:04	:jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:04	
build	27-Nov-2025 17:21:04	> Task :jalviewjsPrepareSite
build	27-Nov-2025 17:21:04	Skipping task ':jalviewjsPrepareSite' as it has no actions.
build	27-Nov-2025 17:21:04	:jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:21:04	:jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:04	
build	27-Nov-2025 17:21:04	> Task :jalviewjsBuildSite
build	27-Nov-2025 17:21:04	Skipping task ':jalviewjsBuildSite' as it has no actions.
build	27-Nov-2025 17:21:04	:jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:21:04	:cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:04	
build	27-Nov-2025 17:21:04	> Task :cleanJalviewjsChromiumUserDir UP-TO-DATE
build	27-Nov-2025 17:21:04	Caching disabled for task ':cleanJalviewjsChromiumUserDir' because:
build	27-Nov-2025 17:21:04	  Build cache is disabled
build	27-Nov-2025 17:21:04	Skipping task ':cleanJalviewjsChromiumUserDir' as it is up-to-date.
build	27-Nov-2025 17:21:04	:cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build	27-Nov-2025 17:21:04	:jalviewjsChromiumProfile (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:04	
build	27-Nov-2025 17:21:04	> Task :jalviewjsChromiumProfile
build	27-Nov-2025 17:21:04	Caching disabled for task ':jalviewjsChromiumProfile' because:
build	27-Nov-2025 17:21:04	  Build cache is disabled
build	27-Nov-2025 17:21:04	Task ':jalviewjsChromiumProfile' is not up-to-date because:
build	27-Nov-2025 17:21:04	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/chromium/First Run has been removed.
build	27-Nov-2025 17:21:04	:jalviewjsChromiumProfile (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs.
build	27-Nov-2025 17:21:04	:jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:04	
build	27-Nov-2025 17:21:04	> Task :jalviewjsCopyStderrLaunchFile
build	27-Nov-2025 17:21:04	Caching disabled for task ':jalviewjsCopyStderrLaunchFile' because:
build	27-Nov-2025 17:21:04	  Build cache is disabled
build	27-Nov-2025 17:21:04	Task ':jalviewjsCopyStderrLaunchFile' is not up-to-date because:
build	27-Nov-2025 17:21:04	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed.
build	27-Nov-2025 17:21:04	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed.
build	27-Nov-2025 17:21:04	:jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':',5,main]) completed. Took 0.065 secs.
build	27-Nov-2025 17:21:04	:jalviewjsLaunchTest (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:04	COMMAND: '/home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html'
build	27-Nov-2025 17:21:04	Starting process 'command '/home/bamboo/buildtools/chromium/chrome''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1 Command: /home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html
build	27-Nov-2025 17:21:04	Successfully started process 'command '/home/bamboo/buildtools/chromium/chrome''
error	27-Nov-2025 17:21:05	[29715:29715:1127/172104.662886:WARNING:chrome_main_delegate.cc(593)] This is Thorium version: 114.0.5735.134 (not a warning)
error	27-Nov-2025 17:21:05	[29715:29715:1127/172105.154039:WARNING:chrome_browser_cloud_management_controller.cc(87)] Could not create policy manager as CBCM is not enabled.
error	27-Nov-2025 17:21:05	[29715:29738:1127/172105.564828:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	27-Nov-2025 17:21:05	[29715:29738:1127/172105.572879:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	27-Nov-2025 17:21:05	[29715:29738:1127/172105.572907:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	27-Nov-2025 17:21:05	[29715:29738:1127/172105.572925:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	27-Nov-2025 17:21:05	[29715:29715:1127/172105.700683:ERROR:chrome_browser_cloud_management_controller.cc(162)] Cloud management controller initialization aborted as CBCM is not enabled.
error	27-Nov-2025 17:21:05	[29715:29738:1127/172105.825023:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	27-Nov-2025 17:21:05	[29715:29738:1127/172105.825052:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	27-Nov-2025 17:21:06	[29751:29751:1127/172105.982338:ERROR:vaapi_wrapper.cc(3273)] Failed to initialize VAAPI libs
error	27-Nov-2025 17:21:06	[29715:29735:1127/172105.989653:WARNING:external_pref_loader.cc(294)] You are using an old-style extension deployment method (external_extensions.json), which will soon be deprecated. (see http://developer.chrome.com/extensions/external_extensions.html)
error	27-Nov-2025 17:21:06	[29751:29751:1127/172105.991146:WARNING:sandbox_linux.cc(393)] InitializeSandbox() called with multiple threads in process gpu-process.
build	27-Nov-2025 17:21:06	
build	27-Nov-2025 17:21:06	> Task :jalviewjsLaunchTest
build	27-Nov-2025 17:21:06	Caching disabled for task ':jalviewjsLaunchTest' because:
build	27-Nov-2025 17:21:06	  Build cache is disabled
build	27-Nov-2025 17:21:06	Task ':jalviewjsLaunchTest' is not up-to-date because:
build	27-Nov-2025 17:21:06	  Task has not declared any outputs despite executing actions.
error	27-Nov-2025 17:21:06	[29752:29788:1127/172106.075302:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration
error	27-Nov-2025 17:21:06	[29752:29788:1127/172106.077650:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration
error	27-Nov-2025 17:21:06	[29715:29715:1127/172106.554443:WARNING:bluez_dbus_manager.cc(247)] Floss manager not present, cannot set Floss enable/disable.
error	27-Nov-2025 17:21:06	[29715:29715:1127/172106.554553:ERROR:object_proxy.cc(590)] Failed to call method: org.freedesktop.portal.Settings.Read: object_path= /org/freedesktop/portal/desktop: unknown error type: 
build	27-Nov-2025 17:21:06	
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.037993:INFO:CONSOLE(13141)] "J2SApplet load testApplet loadClazz...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.038023:INFO:CONSOLE(13141)] "J2SApplet load testApplet start applet...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.140254:INFO:CONSOLE(13084)] "j2sApplet exec testApplet loadClazz null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.160531:INFO:CONSOLE(16968)] "j2sApplet exec testApplet start applet null
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.160552:INFO:CONSOLE(13084)] "j2sApplet exec testApplet start applet null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.161991:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Class.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.177559:INFO:CONSOLE(26)] "transpiler was unknown now 3.3.1-v1 for java.lang.Class
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.177642:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Jalview.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.181356:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/groovy/JalviewObjectI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.183549:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/Platform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.185962:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Console.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.188196:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.jalview.org
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.188215:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.jalview.org
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.188227:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.compbio.dundee.ac.uk
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.188238:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.compbio.dundee.ac.uk
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.189045:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Hashtable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.195489:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Dictionary.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.199807:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Map.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.202855:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.207010:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.211440:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.216020:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFrameViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.218130:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSApp.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.220720:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSInterface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.222990:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletStub.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.224911:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.227045:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URL.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.229720:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/Interface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.231392:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.231525:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.235927:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.239215:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.241924:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractCollection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.244935:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.246548:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Iterable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.248800:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Set.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.253285:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Enumeration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.256141:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Iterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.260171:INFO:CONSOLE(16968)] "JSApp get parameter: language = null
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.260196:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSUtil.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.264225:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/JSUtilI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.266827:INFO:CONSOLE(16968)] "swingjs.JSUtil initialized;debug=false
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.266846:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Locale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.270157:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/BaseLocale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.273352:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/StringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.275941:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AbstractStringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.280619:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LocaleUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.284165:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Enum.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.286212:INFO:CONSOLE(16968)] "JSApp get parameter: name = testApplet
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.286231:INFO:CONSOLE(16968)] "JSApp get parameter: syncId = 7725566714875445
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.286241:INFO:CONSOLE(16968)] "JSApp initialized
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.286561:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Dimension.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.296589:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Dimension2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.299071:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Lst.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.300975:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ArrayList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.303567:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.305721:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/List.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.308173:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/RandomAccess.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.310762:INFO:CONSOLE(16968)] "JSAppletViewer initializing2
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.310788:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Insets.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.314298:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.317297:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.320201:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Thread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.325677:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/JSThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.329173:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.334843:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.340328:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Toolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.351499:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/ComponentFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.354564:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.357246:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.359398:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.362131:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PostEventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.364894:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.371335:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.377355:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/ChangeListenerMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.382473:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.384518:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.387160:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentThreadAppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.389824:INFO:CONSOLE(16968)] "JSToolkit initialized
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.389843:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.392604:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.396747:INFO:CONSOLE(16968)] "JSGraphicsConfiguration initialized
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.396768:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.399716:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.399743:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.402786:INFO:CONSOLE(16968)] "JSGraphicsEnvironment initialized
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.402823:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSScreenDevice
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.402831:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSScreenDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.404656:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.406830:INFO:CONSOLE(16968)] "JSScreenDevice initialized
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.414550:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=0 status=0
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.414575:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingUtilities.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.418091:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.419954:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentKeyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.421847:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InvocationEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.424356:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.428119:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.433999:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ActiveEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.435991:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AWTAutoShutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.439527:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.441537:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/IdentityHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.444373:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventDispatchThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.446937:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.450338:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventFilter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.452826:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Arrays.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.456971:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.461293:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=1
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.461310:INFO:CONSOLE(16968)] "JSAppletViewer runloader
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.461830:INFO:CONSOLE(16968)] "JSApp get parameter: main = jalview.bin.Jalview
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.461845:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSDummyApplet
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.462436:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSDummyApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.463967:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.465716:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/JSApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.467539:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.470466:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Container.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.473775:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.476154:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Component.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.481530:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageObserver.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.486242:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RootPaneContainer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.489463:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FlowLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.497619:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.500096:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ComponentOrientation.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.502310:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JRootPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.505777:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.511710:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/RequestFocusController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.513920:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/EventListenerList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.516615:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.519057:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.522524:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel
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error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.522542:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/HTML5LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.529073:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.532028:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/FontUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.534634:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Font.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.537634:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/UIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.542367:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIDefaults.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.545357:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Color.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.548841:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Paint.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.551439:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Transparency.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.553813:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ColorUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.556823:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/SwingLazyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.559925:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/InsetsUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.561555:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/BorderUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.563775:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/Border.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.565922:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/EtchedBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.568201:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/AbstractBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.570382:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/DimensionUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.573403:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/EmptyBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.577282:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RepaintManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.580345:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingPaintEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.584777:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PaintEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.587541:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPanelUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.590009:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLightweightUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.592229:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSComponentUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.596109:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.600727:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/ComponentPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.603221:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSEventHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.604895:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.606660:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/peer/DropTargetPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.608888:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/LightweightPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.610949:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/ContainerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.614197:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.617686:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.620712:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.622210:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventPostProcessor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.624001:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTKeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.626921:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.632425:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Deque.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.635953:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultKeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.638693:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.640950:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.643450:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.645479:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collections.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.653991:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFocusPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.655944:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/KeyboardFocusManagerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.658813:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/DOMNode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.661610:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Cursor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.672558:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JLayeredPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.675642:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLayeredPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.678792:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/BorderLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.680862:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager2.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.683293:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ArrayTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.685912:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/FocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.687874:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LayoutFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.689459:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SortingFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.695296:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InternalFrameFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.697997:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.699551:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingDefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.701400:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LayoutComparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.703398:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Comparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.708799:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRootPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.711116:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSAppletUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.716592:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LightweightDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.718897:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AWTEventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.720949:INFO:CONSOLE(16968)] "testApplet loaded
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.721020:INFO:CONSOLE(298)] "testApplet loaded", source: swingjs/j2s/swingjs/JSUtil.js (298)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.732132:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=76
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.732162:INFO:CONSOLE(16968)] "testApplet running jalview.bin.Jalview
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.732177:INFO:CONSOLE(298)] "testApplet running jalview.bin.Jalview", source: swingjs/j2s/swingjs/JSUtil.js (298)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.732190:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/PT.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.734682:INFO:CONSOLE(16968)] "Running main(args) in class jalview.bin.Jalview
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.740496:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/BootstrapArgs.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.743159:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Objects.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.745188:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/Arg.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.752188:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ChannelProperties.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.754594:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Properties.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.757464:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/File.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.759457:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/FileSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.761703:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.763450:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.766053:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/channel.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.779527:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/BufferedInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.781952:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/FilterInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.784151:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/InputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.785703:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/Closeable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.787327:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AutoCloseable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.789291:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/ByteArrayInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.791668:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/HttpUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.798165:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.798733:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/HttpURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.803880:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.807206:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/ContentHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.810853:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Rdr.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.815628:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/api/GenericLineReader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.820963:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AU.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.825015:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-16.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.828040:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ImageIcon.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.830103:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Icon.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.834043:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/SB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.836805:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSImagekit
error	27-Nov-2025 17:21:07	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.836822:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSImagekit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.841509:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageConsumer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.847371:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.850102:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/BufferedImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.853140:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Image.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.855425:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/RenderedImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.857779:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.860816:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DirectColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.862605:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/PackedColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.864475:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/color/ColorSpace.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.866662:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/Raster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.868949:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DataBufferInt.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.870680:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DataBuffer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.873536:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/DataStealer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.875788:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/SunWritableRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.877032:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/WritableRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.878998:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/java2d/StateTrackable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.881160:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/java2d/StateTrackableDelegate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.883667:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Point.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.885631:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Point2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.887588:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/SinglePixelPackedSampleModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.890209:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/SampleModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.892340:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/IntegerInterleavedRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.895858:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/IntegerComponentRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:07	[29715:29715:1127/172107.898918:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Rectangle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.903454:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Rectangle2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.905856:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/RectangularShape.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.907807:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Shape.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.911158:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Base64.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.930535:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.936434:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-48.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.942370:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-64.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.947958:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-128.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.959524:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-256.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.964609:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-512.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
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error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.981351:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.985647:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/RegularEnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.994758:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/StreamOpFlag.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172107.996981:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EnumMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.002954:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/stream/AbstractPipeline.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.061433:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/datamodel/PDBEntry.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.064273:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureImportSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.067258:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.069182:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/Format.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.072222:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.074130:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleServiceProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.076798:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.079290:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/JRELocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.081191:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/ResourceBundleBasedAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.084989:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.089970:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.093842:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/SPILocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.097225:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AuxLocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.100563:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleDataMetaInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.102647:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/StringTokenizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.105503:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.107348:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/AccessController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.109287:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/DateFormatProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.111156:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AvailableLanguageTags.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:08	[29715:29715:1127/172108.112875:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LanguageTag.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.115959:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/SimpleDateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.118399:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/AttributedCharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.120115:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/CharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.122335:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimeZone.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.160494:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.163305:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfoFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.166150:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/calendar/tzdb.dat", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.177706:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.180552:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInput.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.196928:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Calendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.200512:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/spi/CalendarProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.203258:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.205858:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/GregorianCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.209484:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.212140:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of sun.util.calendar.Gregorian
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.212157:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/Gregorian.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.216050:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/BaseCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.218468:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/AbstractCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.222766:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataUtility.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.227001:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CalendarDataProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.229658:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleServiceProviderPool.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.233222:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/BreakIteratorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.235890:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/CollatorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.242758:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.249766:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DecimalFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.256378:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/NumberFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.260139:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CurrencyNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.266034:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.268794:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/TimeZoneNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.272871:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.276334:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedExceptionAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.286291:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ServiceLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.290047:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleResources.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.295183:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ref/ReferenceQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.299689:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/LocaleData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.305107:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.310261:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.310286:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/CalendarData.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.317920:INFO:CONSOLE(16968)] "JSUtil caching 1780 bytes for swingjs/j2s/sun/util/resources/CalendarData.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.317941:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of java.util.PropertyResourceBundle
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.317950:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/PropertyResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.322632:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.322670:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.329858:INFO:CONSOLE(16968)] "JSUtil caching 1943 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.329878:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.329888:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.336406:INFO:CONSOLE(16968)] "JSUtil caching 1786 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.336426:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.336436:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.336444:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.336452:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarDate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.353316:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.393463:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.445338:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/FormatData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.484227:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/ParallelListResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.525337:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.556266:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en_GB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.581243:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/NumberFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.622546:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.634803:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.642923:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/FieldPosition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.645214:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DigitList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.649181:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/math/RoundingMode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.661654:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/LaunchUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.666988:INFO:CONSOLE(16968)] "Jalview non-release Version: TEST
error	27-Nov-2025 17:21:09	Jalview non-release Installation: unknown
error	27-Nov-2025 17:21:09	Channel: default
error	27-Nov-2025 17:21:09	Build Date: unknown
error	27-Nov-2025 17:21:09	Preferences file: unknown
error	27-Nov-2025 17:21:09	Log file: unknown
error	27-Nov-2025 17:21:09	Java version: 1.8
error	27-Nov-2025 17:21:09	Java home: https://.
error	27-Nov-2025 17:21:09	Java launch class: unknown
error	27-Nov-2025 17:21:09	Java platform: Mozilla/5.0  5.0 (X11) (Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/114.0.0.0 Safari/537.36)
error	27-Nov-2025 17:21:09	Java LAF: SwingJS (swingjs.plaf.HTML5LookAndFeel)
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.667009:INFO:CONSOLE(26)] "Using default properties file '/TEMP/swingjs/.jalview_nonrelease_properties'
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.667020:INFO:CONSOLE(26)] "Falling back to properties file '/TEMP/swingjs/.jalview_properties'
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.667028:INFO:CONSOLE(26)] "Could not load bootstrap preferences file '/TEMP/swingjs/.jalview_properties'
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.667497:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.670018:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.675302:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/BuildDetails.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.676617:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/BuildDetailsI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.680344:INFO:CONSOLE(16968)] "Jalview non-release version: TEST (Source git-commit:c0746f1378 [bug/JAL-4581_jalviewjs_support_for_java_security_messagedigest])
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.680363:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/ArgsParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.683782:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Vector.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.687184:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.692491:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLogger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.696178:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLoggerLog4j.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.698890:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Runtime.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.702291:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ApplicationShutdownHooks.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.705148:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Shutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.709728:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.713863:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/authors.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.727898:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.735825:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/ws/sifts/SiftsSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.738824:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/urls/IdOrgSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.745561:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/PIRFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.747903:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.750716:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileParse.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.760531:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileReaderI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.769493:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileWriterI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.772279:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/ArgParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.776506:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/JumboEnumSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.779626:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ArgParserUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.784488:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormats.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.789274:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.793033:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormatI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.799415:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/UserAgent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.809799:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Formatter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.813330:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Pattern.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.816471:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Matcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.818609:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/MatchResult.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.824227:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/Desktop.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.830684:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/jbgui/GDesktop.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.833339:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JFrame.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.836403:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSFrame.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.839675:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Window.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.843779:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/WindowConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.847719:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTargetListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.851658:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/ClipboardOwner.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.853980:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/IProgressIndicator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.855715:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/StructureSelectionManagerProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.857493:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/SplashScreen.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.859704:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/HyperlinkListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.894608:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/barton_group-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.910875:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/UoD_banner-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.935623:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphics2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.966745:INFO:CONSOLE(16968)] "JSGraphics2D pixelRatio is 1.0
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.966767:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/RenderingHints.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172108.984956:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/AffineTransform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.005694:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/BasicStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.023618:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Stroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.026476:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSFrameUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.030194:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSWindowUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.033358:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/WindowPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.035230:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.037161:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.038701:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/FramePeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.040738:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEventMulticaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.042721:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.044418:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.046000:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.047214:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.048971:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.050451:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowFocusListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.051620:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowStateListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.053486:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ActionListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.055433:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ItemListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.061482:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AdjustmentListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.063444:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/TextListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.066252:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputMethodListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.068078:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.069556:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyBoundsListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.071156:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseWheelListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.079183:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuBar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.082294:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/MenuElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.085397:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultSingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.087640:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.090121:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuBarUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.092224:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/DefaultMenuLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.095653:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BoxLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.097785:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/DefaultLookup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.100008:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/LazyActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.101587:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ActionMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.103090:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.106568:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.112297:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.116163:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/AbstractButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.119677:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ItemSelectable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.122861:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.124871:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.129915:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.132202:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.134902:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.138112:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.141324:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/basic/BasicBorders.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.144088:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/Constructor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.146040:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AccessibleObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.148346:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AnnotatedElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.151777:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/ButtonListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.154683:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/AncestorListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.156970:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentInputMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.158763:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ComponentInputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.165367:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.180301:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BorderFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.186296:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/BevelBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.211740:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JCheckBoxMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.215056:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JToggleButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.218250:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.220274:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.221939:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRadioButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.236498:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/APQHandlers.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.238650:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/MessageManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.241845:INFO:CONSOLE(16968)] "INFO: Getting messages for lang: en_GB
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.241867:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.241888:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.266026:INFO:CONSOLE(16968)] "JSUtil caching 92337 bytes for swingjs/j2s/lang/Messages.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.276808:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.277015:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.282417:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en_GB.properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.282437:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.289204:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.291588:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.293890:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/font/FontRenderContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.308716:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.311319:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper8.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.312765:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapperI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.314940:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.318298:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.320190:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.322474:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.343971:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ToolTipManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.346701:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.349360:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Timer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.352245:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.355233:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.357647:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPopupMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.360866:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.363259:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/JQueryUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.368796:INFO:CONSOLE(16968)] "JSUtil getting Java resource swingjs/jquery/j2sMenu.js
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.369105:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/j2sMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.371171:INFO:CONSOLE(16968)] "Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [24845]
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.372422:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuKeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.375808:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.379677:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/CompoundBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.383720:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JSeparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.386137:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.387924:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.412943:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyboardManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.435992:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SizeRequirements.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.446191:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.466594:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/JalviewChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.469496:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executors.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.472272:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/TimeUnit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.474646:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/LinkedBlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.477364:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.478862:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/BlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.480444:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/atomic/AtomicInteger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.482140:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/ReentrantLock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.483714:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Lock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.485749:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractQueuedSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.487865:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractOwnableSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.489640:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Condition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.491356:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadPoolExecutor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.493908:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/AbstractExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.495639:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.497230:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.499287:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/RejectedExecutionHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.501072:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.503203:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Semaphore.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.507492:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureSelectionManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.512827:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JDesktopPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.516375:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSDesktopPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.519073:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultDesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.521737:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.526930:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTarget.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.532607:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTargetContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.534598:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/SystemFlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.537186:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.539020:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.542760:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.542805:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/JalviewTaskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.547006:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Taskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.550096:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/Resizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.553189:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSFunction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.574153:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.576801:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Commands.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.580780:INFO:CONSOLE(16968)] "WARN: Error when running commands
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.580797:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.633022:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/net/ssl/HttpsURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.636625:INFO:CONSOLE(10504)] "xhr.open binary async=false url=https://www.jalview.org/jalview-js//swingjs/j2s/build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.668196:INFO:CONSOLE(26)] "Non-fatal exception when checking version at https://www.jalview.org/jalview-js//swingjs/j2s/build_properties:
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.668216:INFO:CONSOLE(26)] "java.io.FileNotFoundException: opening https://www.jalview.org/jalview-js//swingjs/j2s/build_properties
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.668227:INFO:CONSOLE(26)] "anonymous.anonymous(Unknown Source)
error	27-Nov-2025 17:21:09	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.677070:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/HTML5CanvasContext2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.680566:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.683019:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunGraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.710255:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/CausedFocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.713470:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.718376:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimSort.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.722668:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ListIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.779685:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/SentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:09	[29715:29715:1127/172109.783372:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	27-Nov-2025 17:21:10	[29715:29715:1127/172109.915888:WARNING:pref_notifier_impl.cc(41)] Pref observer for media_router.cast_allow_all_ips found at shutdown.
build	27-Nov-2025 17:21:10	
build	27-Nov-2025 17:21:10	> Task :jalviewjsLaunchTest
build	27-Nov-2025 17:21:10	Found line '[29715:29715:1127/172109.542760:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP'
build	27-Nov-2025 17:21:10	:jalviewjsLaunchTest (Thread[Execution worker for ':',5,main]) completed. Took 5.98 secs.
build	27-Nov-2025 17:21:10	:jalviewjs (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:10	
build	27-Nov-2025 17:21:10	> Task :jalviewjs
build	27-Nov-2025 17:21:10	Skipping task ':jalviewjs' as it has no actions.
build	27-Nov-2025 17:21:10	:jalviewjs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:21:10	:jalviewjsSiteTar (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:12	
build	27-Nov-2025 17:21:12	> Task :jalviewjsSiteTar
build	27-Nov-2025 17:21:12	Execution optimizations have been disabled for task ':jalviewjsSiteTar' to ensure correctness due to the following reasons:
build	27-Nov-2025 17:21:12	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/build/jalviewjs/site'. Reason: Task ':jalviewjsSiteTar' uses this output of task ':jalviewjsCopyStderrLaunchFile' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	27-Nov-2025 17:21:12	Invalidating VFS because task ':jalviewjsSiteTar' failed validation
build	27-Nov-2025 17:21:12	Caching disabled for task ':jalviewjsSiteTar' because:
build	27-Nov-2025 17:21:12	  Build cache is disabled
build	27-Nov-2025 17:21:12	Task ':jalviewjsSiteTar' is not up-to-date because:
build	27-Nov-2025 17:21:12	  Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build	27-Nov-2025 17:21:13	:jalviewjsSiteTar (Thread[Execution worker for ':',5,main]) completed. Took 3.129 secs.
build	27-Nov-2025 17:21:13	producer locations for task group 1 (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:13	producer locations for task group 1 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:21:13	producer locations for task group 2 (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:13	producer locations for task group 2 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:21:13	producer locations for task group 3 (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:13	producer locations for task group 3 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:21:13	producer locations for task group 4 (Thread[Execution worker for ':',5,main]) started.
build	27-Nov-2025 17:21:13	producer locations for task group 4 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	27-Nov-2025 17:21:13	
build	27-Nov-2025 17:21:13	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	27-Nov-2025 17:21:13	
build	27-Nov-2025 17:21:13	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	27-Nov-2025 17:21:13	
build	27-Nov-2025 17:21:13	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	27-Nov-2025 17:21:13	
build	27-Nov-2025 17:21:13	Execution optimizations have been disabled for 3 invalid unit(s) of work during this build to ensure correctness.
build	27-Nov-2025 17:21:13	Please consult deprecation warnings for more details.
build	27-Nov-2025 17:21:13	
build	27-Nov-2025 17:21:13	BUILD SUCCESSFUL in 2m 3s
build	27-Nov-2025 17:21:13	29 actionable tasks: 26 executed, 3 up-to-date
build	27-Nov-2025 17:21:13	dependencies-accessors (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/7.4.2/dependencies-accessors) removing files not accessed on or after Thu Nov 20 17:19:11 GMT 2025.
build	27-Nov-2025 17:21:13	dependencies-accessors (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/7.4.2/dependencies-accessors) cleanup deleted 0 files/directories.
build	27-Nov-2025 17:21:13	dependencies-accessors (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB57-JOB1/.gradle/7.4.2/dependencies-accessors) cleaned up in 0.0 secs.
simple	27-Nov-2025 17:21:13	Finished task 'JalviewJS build site and distributable tar' with result: Success
simple	27-Nov-2025 17:21:13	Running post build plugin 'NCover Results Collector'
simple	27-Nov-2025 17:21:13	Running post build plugin 'Artifact Copier'
simple	27-Nov-2025 17:21:13	Publishing an artifact: JalviewJS site tar file
simple	27-Nov-2025 17:21:13	Finished publishing of artifact Shared artifact: [JalviewJS site tar file], pattern: [jalviewjs-site-*.tar.gz] anchored at: [build/distributions/] in 37.68 ms
simple	27-Nov-2025 17:21:13	Publishing an artifact: JalviewJS site
simple	27-Nov-2025 17:21:20	Finished publishing of artifact Shared artifact: [JalviewJS site], pattern: [**/*] anchored at: [build/jalviewjs/site] in 6.287 s
simple	27-Nov-2025 17:21:20	Running post build plugin 'Artifactory Release Management Staging'
simple	27-Nov-2025 17:21:20	Running post build plugin 'Artifactory Build Info Copier'
simple	27-Nov-2025 17:21:20	Running post build plugin 'Artifactory Gradle Properties Info Copier'
simple	27-Nov-2025 17:21:20	Running post build plugin 'npm Cache Cleanup'
simple	27-Nov-2025 17:21:20	Running post build plugin 'Clover Results Collector'
simple	27-Nov-2025 17:21:20	Running post build plugin 'Docker Container Cleanup'
simple	27-Nov-2025 17:21:20	Finalising the build...
simple	27-Nov-2025 17:21:20	Stopping timer.
simple	27-Nov-2025 17:21:20	Build JB-GJB57-JOB1-2 completed.
simple	27-Nov-2025 17:21:20	Running on server: post build plugin 'NCover Results Collector'
simple	27-Nov-2025 17:21:20	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	27-Nov-2025 17:21:20	Running on server: post build plugin 'Clover Delta Calculator'
simple	27-Nov-2025 17:21:20	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	27-Nov-2025 17:21:20	All post build plugins have finished
simple	27-Nov-2025 17:21:20	Generating build results summary...
simple	27-Nov-2025 17:21:20	Saving build results to disk...
simple	27-Nov-2025 17:21:20	Logging substituted variables...
simple	27-Nov-2025 17:21:20	Indexing build results...
simple	27-Nov-2025 17:21:20	Finished building JB-GJB57-JOB1-2.