simple	13-Nov-2024 18:25:00	Build Jalview Builds - Gradle JalviewJS Build - Default Job #471 (JB-GJB-JOB1-471) started building on agent Default Agent
simple	13-Nov-2024 18:25:00	
simple	13-Nov-2024 18:25:00	Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1
simple	13-Nov-2024 18:25:00	Executing build Jalview Builds - Gradle JalviewJS Build - Default Job #471 (JB-GJB-JOB1-471)
simple	13-Nov-2024 18:25:00	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	13-Nov-2024 18:25:00	Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1
simple	13-Nov-2024 18:25:00	Updating source code to revision: 544bd63f8e2c0122da4f309bdc415162fc1da737
simple	13-Nov-2024 18:25:00	Fetching 'refs/heads/develop' from 'http://source.jalview.org/git/jalview.git'.
simple	13-Nov-2024 18:25:00	Checking out revision 544bd63f8e2c0122da4f309bdc415162fc1da737.
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	13-Nov-2024 18:25:01	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	13-Nov-2024 18:25:03	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	13-Nov-2024 18:25:04	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	13-Nov-2024 18:25:05	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164
simple	13-Nov-2024 18:25:06	   a3bb626..544bd63  develop    -> origin/develop
simple	13-Nov-2024 18:25:06	 * [new branch]      patch/JAL-4077_jmolsaveloadwindows -> origin/patch/JAL-4077_jmolsaveloadwindows
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Pre_R29_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/RNAalifold does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_4_branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/VamJalview does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1499 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2103 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/hmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/mchmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-bh does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-jim does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/j2s/develop-toc does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/jalview-headless does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/clinvar does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/phyre2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/jim does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/kira does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/koen does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/mungo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/phyre does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/thomas does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/spikes/toch does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/remotes/origin/vamsasDemo does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Archived_Release_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Jalview_2_4_0b2 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_10_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_11_2_7 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_4_0 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_5_1 does not point to a valid object!
simple	13-Nov-2024 18:25:06	error: refs/tags/Release_2_6_1 does not point to a valid object!
simple	13-Nov-2024 18:25:07	Already on 'develop'
simple	13-Nov-2024 18:25:07	Your branch is behind 'origin/develop' by 10 commits, and can be fast-forwarded.
simple	13-Nov-2024 18:25:07	  (use "git pull" to update your local branch)
simple	13-Nov-2024 18:25:07	HEAD is now at 544bd63 JAL-2275 JAL-3921 JAL-4077 release notes JAL-4090
simple	13-Nov-2024 18:25:07	Updated source code to revision: 544bd63f8e2c0122da4f309bdc415162fc1da737
simple	13-Nov-2024 18:25:07	Finished task 'Checkout Default Repository' with result: Success
simple	13-Nov-2024 18:25:07	Running pre-build action: VCS Version Collector
simple	13-Nov-2024 18:25:07	Running pre-build action: Artifactory Release Staging
simple	13-Nov-2024 18:25:07	Starting task 'JalviewJS build site and distributable tar' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	13-Nov-2024 18:25:07	Bamboo Artifactory Plugin version: 2.6.2
command	13-Nov-2024 18:25:07	Beginning to execute external process for build 'Jalview Builds - Gradle JalviewJS Build - Default Job #471 (JB-GJB-JOB1-471)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest --info clean eclipse jalviewjsCreateJ2sSettings jalviewjs jalviewjsSiteTar\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=develop\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=develop\nbamboo_repository_revision_number=544bd63f8e2c0122da4f309bdc415162fc1da737\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GJB-JOB1-471\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GJB-JOB1\nbamboo_shortPlanName=Gradle JalviewJS Build\nbamboo_planRepository_name=Jalview Git\nLOGNAME=bamboo\nbamboo_buildNumber=471\nPWD=/\nbamboo_repository_12156996_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GJB-JOB1-471\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nSHELL=/bin/bash\nbamboo_repository_12156996_revision_number=544bd63f8e2c0122da4f309bdc415162fc1da737\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle JalviewJS Build\nbamboo_shortPlanKey=GJB\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=544bd63f8e2c0122da4f309bdc415162fc1da737\nbamboo_buildTimeStamp=2024-11-13T18:25:00.792Z\nbamboo_repository_previous_revision_number=a3bb626cf79d42346add84b85a593d20253e723a\nbamboo_planRepository_previousRevision=a3bb626cf79d42346add84b85a593d20253e723a\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=JB-GJB-JOB1-471\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Jalview Builds - Gradle JalviewJS Build - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=544bd63f8e2c0122da4f309bdc415162fc1da737\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Git\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=a3bb626cf79d42346add84b85a593d20253e723a\nbamboo_planRepository_branchDisplayName=develop\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=develop\nbamboo_repository_12156996_branch_name=develop\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_repository_12156996_previous_revision_number=a3bb626cf79d42346add84b85a593d20253e723a\nbamboo_plan_storageTag=plan-11960455\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_12156996_name=Jalview Git\nbamboo_repository_12156996_git_branch=develop\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_repository_12156996_git_username=\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1\nbamboo_planKey=JB-GJB\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=develop\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	13-Nov-2024 18:25:07	Initialized native services in: /srv/bamboo/home/bamboo/.gradle/native
build	13-Nov-2024 18:25:07	Initialized jansi services in: /srv/bamboo/home/bamboo/.gradle/native
build	13-Nov-2024 18:25:07	The client will now receive all logging from the daemon (pid: 22424). The daemon log file: /srv/bamboo/home/bamboo/.gradle/daemon/7.4.2/daemon-22424.out.log
build	13-Nov-2024 18:25:07	Starting 10th build in daemon [uptime: 2 hrs 14 mins 58.198 secs, performance: 100%, non-heap usage: 39% of 256 MiB]
build	13-Nov-2024 18:25:07	Using 4 worker leases.
build	13-Nov-2024 18:25:07	Watching the file system is configured to be enabled if available
build	13-Nov-2024 18:25:07	File system watching is inactive
build	13-Nov-2024 18:25:07	Starting Build
build	13-Nov-2024 18:25:07	Settings evaluated using settings file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/settings.gradle'.
build	13-Nov-2024 18:25:07	Projects loaded. Root project using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build.gradle'.
build	13-Nov-2024 18:25:07	Included projects: [root project 'jalview']
build	13-Nov-2024 18:25:08	
build	13-Nov-2024 18:25:08	> Configure project :
build	13-Nov-2024 18:25:08	Evaluating root project 'jalview' using build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build.gradle'.
build	13-Nov-2024 18:25:08	Using properties from file './utils/channels/default/channel_gradle.properties'
build	13-Nov-2024 18:25:08	JALVIEW_VERSION is set to '2.11.4.2'
build	13-Nov-2024 18:25:08	HEADLESS BUILD
build	13-Nov-2024 18:25:08	J2S ENABLED
build	13-Nov-2024 18:25:08	Using a LOCAL profile.
build	13-Nov-2024 18:25:08	file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/main/java', not found
build	13-Nov-2024 18:25:08	file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/resources/doc_build', not found
build	13-Nov-2024 18:25:08	file or directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/classes', not found
build	13-Nov-2024 18:25:08	eclipseDir exists
build	13-Nov-2024 18:25:08	All projects evaluated.
build	13-Nov-2024 18:25:08	Selected primary task 'clean' from project :
build	13-Nov-2024 18:25:08	Selected primary task 'eclipse' from project :
build	13-Nov-2024 18:25:08	Selected primary task 'jalviewjsCreateJ2sSettings' from project :
build	13-Nov-2024 18:25:08	Selected primary task 'jalviewjs' from project :
build	13-Nov-2024 18:25:08	Selected primary task 'jalviewjsSiteTar' from project :
build	13-Nov-2024 18:25:08	Tasks to be executed: [task ':clean', task ':eclipseClasspath', task ':eclipseJdt', task ':eclipseProject', task ':eclipse', task ':jalviewjsCreateJ2sSettings', task ':jalviewjsEclipsePaths', task ':jalviewjsEclipseCopyDropins', task ':jalviewjsSetEclipseWorkspace', task ':jalviewjsEclipseSetup', task ':jalviewjsEnableAltFileProperty', task ':eclipseSetup', task ':jalviewjsProjectImport', task ':jalviewjsTranspile', task ':jalviewjsCopyTransferSiteJs', task ':jalviewjsTransferUnzipLib', task ':jalviewjsTransferUnzipSwingJs', task ':jalviewjsTransferUnzipAllLibs', task ':jalviewjsSyncAllLibs', task ':copyResources', task ':createBuildProperties', task ':jalviewjsSyncBuildProperties', task ':jalviewjsBuildAllCores', task ':jalviewjsPublishCoreTemplates', task ':jalviewjsSyncCore', task ':copyChannelResources', task ':buildResources', task ':jalviewjsSyncResources', task ':jalviewjsSyncSiteResources', task ':jalviewjsPrepareSite', task ':jalviewjsBuildSite', task ':cleanJalviewjsChromiumUserDir', task ':jalviewjsChromiumProfile', task ':jalviewjsCopyStderrLaunchFile', task ':jalviewjsLaunchTest', task ':jalviewjs', task ':jalviewjsSiteTar']
build	13-Nov-2024 18:25:08	Tasks that were excluded: []
build	13-Nov-2024 18:25:08	:clean (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :clean
build	13-Nov-2024 18:25:09	Caching disabled for task ':clean' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Task ':clean' is not up-to-date because:
build	13-Nov-2024 18:25:09	  Task has not declared any outputs despite executing actions.
build	13-Nov-2024 18:25:09	:clean (Thread[Execution worker for ':',5,main]) completed. Took 0.921 secs.
build	13-Nov-2024 18:25:09	:jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :jalviewjsEclipsePaths
build	13-Nov-2024 18:25:09	Caching disabled for task ':jalviewjsEclipsePaths' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Task ':jalviewjsEclipsePaths' is not up-to-date because:
build	13-Nov-2024 18:25:09	  Task has not declared any outputs despite executing actions.
build	13-Nov-2024 18:25:09	Running task jalviewjsEclipsePaths as IN_ECLIPSE=false
build	13-Nov-2024 18:25:09	ECLIPSE VERSION=4.28.0
build	13-Nov-2024 18:25:09	:jalviewjsEclipsePaths (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:25:09	destroyer locations for task group 0 (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	destroyer locations for task group 0 (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:25:09	:eclipseClasspath (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :eclipseClasspath
build	13-Nov-2024 18:25:09	Caching disabled for task ':eclipseClasspath' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Task ':eclipseClasspath' is not up-to-date because:
build	13-Nov-2024 18:25:09	  Task.upToDateWhen is false.
build	13-Nov-2024 18:25:09	:eclipseClasspath (Thread[Execution worker for ':',5,main]) completed. Took 0.062 secs.
build	13-Nov-2024 18:25:09	:eclipseJdt (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :eclipseJdt
build	13-Nov-2024 18:25:09	Caching disabled for task ':eclipseJdt' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Task ':eclipseJdt' is not up-to-date because:
build	13-Nov-2024 18:25:09	  Task.upToDateWhen is false.
build	13-Nov-2024 18:25:09	:eclipseJdt (Thread[Execution worker for ':',5,main]) completed. Took 0.059 secs.
build	13-Nov-2024 18:25:09	:eclipseProject (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :eclipseProject
build	13-Nov-2024 18:25:09	Caching disabled for task ':eclipseProject' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Task ':eclipseProject' is not up-to-date because:
build	13-Nov-2024 18:25:09	  Task.upToDateWhen is false.
build	13-Nov-2024 18:25:09	:eclipseProject (Thread[Execution worker for ':',5,main]) completed. Took 0.004 secs.
build	13-Nov-2024 18:25:09	:eclipse (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :eclipse
build	13-Nov-2024 18:25:09	Skipping task ':eclipse' as it has no actions.
build	13-Nov-2024 18:25:09	:eclipse (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:25:09	:jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :jalviewjsCreateJ2sSettings
build	13-Nov-2024 18:25:09	Caching disabled for task ':jalviewjsCreateJ2sSettings' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Task ':jalviewjsCreateJ2sSettings' is not up-to-date because:
build	13-Nov-2024 18:25:09	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/config/j2s has been removed.
build	13-Nov-2024 18:25:09	  Output property 'outputFile' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/config/j2s has been removed.
build	13-Nov-2024 18:25:09	:jalviewjsCreateJ2sSettings (Thread[Execution worker for ':',5,main]) completed. Took 0.002 secs.
build	13-Nov-2024 18:25:09	:jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :jalviewjsEclipseCopyDropins
build	13-Nov-2024 18:25:09	Caching disabled for task ':jalviewjsEclipseCopyDropins' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Task ':jalviewjsEclipseCopyDropins' is not up-to-date because:
build	13-Nov-2024 18:25:09	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/eclipse_dropins has been removed.
build	13-Nov-2024 18:25:09	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/eclipse_dropins/com.seeq.eclipse.importprojects.jar has been removed.
build	13-Nov-2024 18:25:09	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/eclipse_dropins/net.sf.j2s.core-j11.jar has been removed.
build	13-Nov-2024 18:25:09	:jalviewjsEclipseCopyDropins (Thread[Execution worker for ':',5,main]) completed. Took 0.045 secs.
build	13-Nov-2024 18:25:09	:jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :jalviewjsSetEclipseWorkspace
build	13-Nov-2024 18:25:09	Caching disabled for task ':jalviewjsSetEclipseWorkspace' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Task ':jalviewjsSetEclipseWorkspace' is not up-to-date because:
build	13-Nov-2024 18:25:09	  Task.upToDateWhen is false.
build	13-Nov-2024 18:25:09	Running task jalviewjsSetEclipseWorkspace as IN_ECLIPSE=false
build	13-Nov-2024 18:25:09	EXISTING ECLIPSE WORKSPACE: /tmp/groovy-generated-tmpdir-9882307966825724401
build	13-Nov-2024 18:25:09	:jalviewjsSetEclipseWorkspace (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build	13-Nov-2024 18:25:09	:jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :jalviewjsEclipseSetup
build	13-Nov-2024 18:25:09	Skipping task ':jalviewjsEclipseSetup' as it has no actions.
build	13-Nov-2024 18:25:09	:jalviewjsEclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:25:09	:jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :jalviewjsEnableAltFileProperty UP-TO-DATE
build	13-Nov-2024 18:25:09	Caching disabled for task ':jalviewjsEnableAltFileProperty' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Skipping task ':jalviewjsEnableAltFileProperty' as it is up-to-date.
build	13-Nov-2024 18:25:09	:jalviewjsEnableAltFileProperty (Thread[Execution worker for ':',5,main]) completed. Took 0.001 secs.
build	13-Nov-2024 18:25:09	:eclipseSetup (Thread[Execution worker for ':',5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :eclipseSetup
build	13-Nov-2024 18:25:09	Skipping task ':eclipseSetup' as it has no actions.
build	13-Nov-2024 18:25:09	:eclipseSetup (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:25:09	:jalviewjsProjectImport (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:25:09	
build	13-Nov-2024 18:25:09	> Task :jalviewjsProjectImport UP-TO-DATE
build	13-Nov-2024 18:25:09	Caching disabled for task ':jalviewjsProjectImport' because:
build	13-Nov-2024 18:25:09	  Build cache is disabled
build	13-Nov-2024 18:25:09	Skipping task ':jalviewjsProjectImport' as it is up-to-date.
build	13-Nov-2024 18:25:09	:jalviewjsProjectImport (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.002 secs.
build	13-Nov-2024 18:25:09	:jalviewjsTranspile (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:25:11	
build	13-Nov-2024 18:25:11	> Task :jalviewjsTranspile
build	13-Nov-2024 18:25:11	Caching disabled for task ':jalviewjsTranspile' because:
build	13-Nov-2024 18:25:11	  Build cache is disabled
build	13-Nov-2024 18:25:11	Task ':jalviewjsTranspile' is not up-to-date because:
build	13-Nov-2024 18:25:11	  Task.upToDateWhen is false.
build	13-Nov-2024 18:25:11	Running task jalviewjsTranspile as IN_ECLIPSE=false
build	13-Nov-2024 18:25:11	Starting process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1 Command: /home/bamboo/buildtools/eclipse/latest/eclipse/eclipse -nosplash --launcher.suppressErrors -application org.eclipse.jdt.apt.core.aptBuild -data /tmp/groovy-generated-tmpdir-9882307966825724401 -cleanBuild jalview --launcher.appendVmargs -vmargs -Dorg.eclipse.equinox.p2.reconciler.dropins.directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/eclipse_dropins -Dnet.sf.j2s.core.headlessbuild=true -Dorg.jalview.jalviewjsj2sfilename=./build/jalviewjs/config/j2s
build	13-Nov-2024 18:25:11	Successfully started process 'command '/home/bamboo/buildtools/eclipse/latest/eclipse/eclipse''
error	13-Nov-2024 18:25:13	SLF4J: No SLF4J providers were found.
error	13-Nov-2024 18:25:13	SLF4J: Defaulting to no-operation (NOP) logger implementation
error	13-Nov-2024 18:25:13	SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
build	13-Nov-2024 18:25:23	Invoking 'Java Builder' on '/jalview'.
build	13-Nov-2024 18:25:24	net.sf.j2s.core.3.3.1/3.3.1-v1 started
build	13-Nov-2024 18:25:24	J2S CompilationParticipant started
build	13-Nov-2024 18:25:24	J2S isActive true /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1 
build	13-Nov-2024 18:25:24	J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1
build	13-Nov-2024 18:25:25	J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1
build	13-Nov-2024 18:25:25	Cleaning output folder for jalview
build	13-Nov-2024 18:25:25	Build done
build	13-Nov-2024 18:25:25	Invoking 'Gradle Project Builder' on '/jalview'.
build	13-Nov-2024 18:25:25	Invoking 'Java Builder' on '/jalview'.
build	13-Nov-2024 18:25:25	J2S aboutToBuild jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1
build	13-Nov-2024 18:25:25	Preparing to build jalview
build	13-Nov-2024 18:25:25	Cleaning output folder for jalview
build	13-Nov-2024 18:25:25	J2S cleanStarting /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1
build	13-Nov-2024 18:25:25	Copying resources to the output folder
build	13-Nov-2024 18:25:25	Analyzing sources
build	13-Nov-2024 18:25:25	J2S buildStarting 1103 files, contexts.size() = 1, isBatch=true
build	13-Nov-2024 18:25:25	Compiling jalview/src/com/github/reinert/jjschema
build	13-Nov-2024 18:25:27	Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:27	(Found 1 warning) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:27	(Found 2 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:27	(Found 3 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 4 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 5 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 9 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 12 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 13 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 14 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 15 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 37 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 38 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 46 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 47 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 48 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 49 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 50 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 51 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 52 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 59 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 63 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 67 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 69 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 89 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 90 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 91 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 98 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 108 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 113 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 114 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 115 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 119 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 120 warnings) Compiling jalview/src/com/stevesoft/pat
build	13-Nov-2024 18:25:28	(Found 120 warnings) Compiling jalview/src/com/stevesoft/pat/wrap
build	13-Nov-2024 18:25:28	(Found 124 warnings) Compiling jalview/src/darrylbu/util
build	13-Nov-2024 18:25:28	(Found 124 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	13-Nov-2024 18:25:28	(Found 126 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	13-Nov-2024 18:25:28	(Found 135 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2
build	13-Nov-2024 18:25:28	(Found 138 warnings) Compiling jalview/src/ext/edu/ucsf/rbvi/strucviz2/port
build	13-Nov-2024 18:25:28	(Found 138 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:28	(Found 145 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:28	(Found 152 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:28	(Found 190 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:28	(Found 197 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:28	(Found 253 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:28	(Found 285 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:28	(Found 292 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:28	(Found 360 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:29	(Found 363 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:29	(Found 366 warnings) Compiling jalview/src/ext/vamsas
build	13-Nov-2024 18:25:29	(Found 368 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 372 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 377 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 382 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 415 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 423 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 424 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 425 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 426 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 428 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 429 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 430 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 436 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 443 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 469 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 473 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 474 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 509 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 573 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 574 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 580 warnings) Compiling jalview/src/jalview/analysis
build	13-Nov-2024 18:25:29	(Found 580 warnings) Compiling jalview/src/jalview/analysis/scoremodels
build	13-Nov-2024 18:25:29	(Found 583 warnings) Compiling jalview/src/jalview/analysis/scoremodels
build	13-Nov-2024 18:25:29	(Found 593 warnings) Compiling jalview/src/jalview/analytics
build	13-Nov-2024 18:25:29	(Found 593 warnings) Compiling jalview/src/jalview/api
build	13-Nov-2024 18:25:29	(Found 593 warnings) Compiling jalview/src/jalview/api/analysis
build	13-Nov-2024 18:25:29	(Found 595 warnings) Compiling jalview/src/jalview/api/structures
build	13-Nov-2024 18:25:29	(Found 598 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:29	(Found 654 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:29	(Found 663 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:29	(Found 664 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:29	(Found 669 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:29	(Found 670 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:29	(Found 672 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:29	(Found 683 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 685 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 690 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 691 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 692 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 693 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 695 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 697 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 698 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 700 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 701 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 706 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 707 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 708 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 710 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 711 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 713 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 721 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 731 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 732 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 733 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 735 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 736 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 741 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 744 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 781 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 783 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 784 warnings) Compiling jalview/src/jalview/appletgui
build	13-Nov-2024 18:25:30	(Found 784 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 788 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 791 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 792 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 799 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 801 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 3 errors + 859 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 3 errors + 864 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 3 errors + 866 warnings) Compiling jalview/src/jalview/bin
build	13-Nov-2024 18:25:30	(Found 3 errors + 866 warnings) Compiling jalview/src/jalview/bin/argparser
build	13-Nov-2024 18:25:30	(Found 3 errors + 867 warnings) Compiling jalview/src/jalview/bin/argparser
build	13-Nov-2024 18:25:30	(Found 3 errors + 869 warnings) Compiling jalview/src/jalview/bin/argparser
build	13-Nov-2024 18:25:30	(Found 3 errors + 870 warnings) Compiling jalview/src/jalview/bin/argparser
build	13-Nov-2024 18:25:30	(Found 3 errors + 870 warnings) Compiling jalview/src/jalview/bin/groovy
build	13-Nov-2024 18:25:30	(Found 3 errors + 870 warnings) Compiling jalview/src/jalview/commands
build	13-Nov-2024 18:25:30	(Found 3 errors + 870 warnings) Compiling jalview/src/jalview/controller
build	13-Nov-2024 18:25:30	(Found 3 errors + 870 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:30	(Found 3 errors + 883 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 884 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 885 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 888 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 889 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 890 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 896 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 900 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 902 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 903 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 904 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 905 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 910 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 911 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 919 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 920 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 921 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 924 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 930 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 934 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 938 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 940 warnings) Compiling jalview/src/jalview/datamodel
build	13-Nov-2024 18:25:31	(Found 3 errors + 941 warnings) Compiling jalview/src/jalview/datamodel/annotations
build	13-Nov-2024 18:25:31	(Found 3 errors + 941 warnings) Compiling jalview/src/jalview/datamodel/features
build	13-Nov-2024 18:25:31	(Found 3 errors + 941 warnings) Compiling jalview/src/jalview/exceptions
build	13-Nov-2024 18:25:31	(Found 3 errors + 941 warnings) Compiling jalview/src/jalview/ext/android
build	13-Nov-2024 18:25:31	(Found 3 errors + 941 warnings) Compiling jalview/src/jalview/ext/ensembl
build	13-Nov-2024 18:25:31	(Found 3 errors + 943 warnings) Compiling jalview/src/jalview/ext/ensembl
build	13-Nov-2024 18:25:31	(Found 3 errors + 945 warnings) Compiling jalview/src/jalview/ext/ensembl
build	13-Nov-2024 18:25:31	(Found 3 errors + 946 warnings) Compiling jalview/src/jalview/ext/ensembl
build	13-Nov-2024 18:25:31	(Found 3 errors + 948 warnings) Compiling jalview/src/jalview/ext/ensembl
build	13-Nov-2024 18:25:31	(Found 3 errors + 951 warnings) Compiling jalview/src/jalview/ext/htsjdk
build	13-Nov-2024 18:25:31	(Found 3 errors + 952 warnings) Compiling jalview/src/jalview/ext/htsjdk
build	13-Nov-2024 18:25:31	(Found 3 errors + 957 warnings) Compiling jalview/src/jalview/ext/jmol
build	13-Nov-2024 18:25:31	(Found 3 errors + 961 warnings) Compiling jalview/src/jalview/ext/paradise
build	13-Nov-2024 18:25:31	(Found 3 errors + 961 warnings) Compiling jalview/src/jalview/ext/pymol
build	13-Nov-2024 18:25:31	(Found 3 errors + 963 warnings) Compiling jalview/src/jalview/ext/pymol
build	13-Nov-2024 18:25:31	(Found 3 errors + 963 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	13-Nov-2024 18:25:31	(Found 3 errors + 964 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	13-Nov-2024 18:25:31	(Found 3 errors + 965 warnings) Compiling jalview/src/jalview/ext/rbvi/chimera
build	13-Nov-2024 18:25:31	(Found 3 errors + 965 warnings) Compiling jalview/src/jalview/ext/so
build	13-Nov-2024 18:25:31	(Found 3 errors + 965 warnings) Compiling jalview/src/jalview/ext/varna
build	13-Nov-2024 18:25:31	(Found 3 errors + 965 warnings) Compiling jalview/src/jalview/fts/api
build	13-Nov-2024 18:25:31	(Found 3 errors + 966 warnings) Compiling jalview/src/jalview/fts/api
build	13-Nov-2024 18:25:31	(Found 3 errors + 967 warnings) Compiling jalview/src/jalview/fts/core
build	13-Nov-2024 18:25:31	(Found 3 errors + 970 warnings) Compiling jalview/src/jalview/fts/core
build	13-Nov-2024 18:25:31	(Found 3 errors + 971 warnings) Compiling jalview/src/jalview/fts/core
build	13-Nov-2024 18:25:31	(Found 3 errors + 972 warnings) Compiling jalview/src/jalview/fts/core
build	13-Nov-2024 18:25:31	(Found 3 errors + 972 warnings) Compiling jalview/src/jalview/fts/service/alphafold
build	13-Nov-2024 18:25:31	(Found 3 errors + 972 warnings) Compiling jalview/src/jalview/fts/service/pdb
build	13-Nov-2024 18:25:31	(Found 3 errors + 979 warnings) Compiling jalview/src/jalview/fts/service/pdb
build	13-Nov-2024 18:25:31	(Found 3 errors + 979 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	13-Nov-2024 18:25:31	(Found 3 errors + 981 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	13-Nov-2024 18:25:31	(Found 3 errors + 985 warnings) Compiling jalview/src/jalview/fts/service/threedbeacons
build	13-Nov-2024 18:25:31	(Found 3 errors + 989 warnings) Compiling jalview/src/jalview/fts/service/uniprot
build	13-Nov-2024 18:25:31	(Found 3 errors + 989 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:31	(Found 3 errors + 990 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 992 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 993 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 994 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 995 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 996 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 997 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 998 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1004 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1007 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1008 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1009 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1018 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1048 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1058 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1059 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1060 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1061 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1066 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1067 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1068 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1073 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1074 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1078 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1083 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1084 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1086 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1087 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1088 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1089 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1090 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1096 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1097 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1098 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1099 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:32	(Found 3 errors + 1100 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1102 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1103 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1104 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1107 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1109 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1116 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1118 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1120 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1121 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1122 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1124 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1128 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1137 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1146 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1149 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1150 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1151 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1153 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1154 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1156 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1162 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1165 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1166 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1204 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1209 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1210 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1237 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1240 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1247 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1305 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1318 warnings) Compiling jalview/src/jalview/gui
build	13-Nov-2024 18:25:33	(Found 3 errors + 1320 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	13-Nov-2024 18:25:33	(Found 3 errors + 1322 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	13-Nov-2024 18:25:33	(Found 3 errors + 1327 warnings) Compiling jalview/src/jalview/gui/structurechooser
build	13-Nov-2024 18:25:33	(Found 3 errors + 1327 warnings) Compiling jalview/src/jalview/httpserver
build	13-Nov-2024 18:25:33	(Found 3 errors + 1327 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1332 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1334 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1336 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1338 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1358 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1360 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1362 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1366 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:33	(Found 3 errors + 1369 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1370 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1371 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1372 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1410 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1413 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1415 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1435 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1468 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1470 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1472 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1473 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1474 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1487 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1549 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1550 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1551 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1633 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1638 warnings) Compiling jalview/src/jalview/io
build	13-Nov-2024 18:25:34	(Found 3 errors + 1638 warnings) Compiling jalview/src/jalview/io/cache
build	13-Nov-2024 18:25:34	(Found 3 errors + 1639 warnings) Compiling jalview/src/jalview/io/exceptions
build	13-Nov-2024 18:25:34	(Found 3 errors + 1639 warnings) Compiling jalview/src/jalview/io/gff
build	13-Nov-2024 18:25:34	(Found 3 errors + 1640 warnings) Compiling jalview/src/jalview/io/gff
build	13-Nov-2024 18:25:34	(Found 3 errors + 1640 warnings) Compiling jalview/src/jalview/io/packed
build	13-Nov-2024 18:25:34	(Found 3 errors + 1646 warnings) Compiling jalview/src/jalview/io/packed
build	13-Nov-2024 18:25:34	(Found 3 errors + 1648 warnings) Compiling jalview/src/jalview/io/packed
build	13-Nov-2024 18:25:34	(Found 3 errors + 1648 warnings) Compiling jalview/src/jalview/io/vamsas
build	13-Nov-2024 18:25:34	(Found 3 errors + 1666 warnings) Compiling jalview/src/jalview/io/vamsas
build	13-Nov-2024 18:25:34	(Found 3 errors + 1677 warnings) Compiling jalview/src/jalview/io/vamsas
build	13-Nov-2024 18:25:34	(Found 3 errors + 1678 warnings) Compiling jalview/src/jalview/io/vamsas
build	13-Nov-2024 18:25:34	(Found 3 errors + 1691 warnings) Compiling jalview/src/jalview/io/vamsas
build	13-Nov-2024 18:25:34	(Found 3 errors + 1695 warnings) Compiling jalview/src/jalview/io/vamsas
build	13-Nov-2024 18:25:34	(Found 3 errors + 1699 warnings) Compiling jalview/src/jalview/io/vamsas
build	13-Nov-2024 18:25:34	(Found 3 errors + 1722 warnings) Compiling jalview/src/jalview/io/vamsas
build	13-Nov-2024 18:25:34	(Found 3 errors + 1725 warnings) Compiling jalview/src/jalview/io/vcf
build	13-Nov-2024 18:25:34	(Found 4 errors + 1734 warnings) Compiling jalview/src/jalview/javascript
build	13-Nov-2024 18:25:34	(Found 4 errors + 1738 warnings) Compiling jalview/src/jalview/javascript
build	13-Nov-2024 18:25:34	(Found 4 errors + 1739 warnings) Compiling jalview/src/jalview/javascript/json
build	13-Nov-2024 18:25:34	(Found 4 errors + 1739 warnings) Compiling jalview/src/jalview/javascript/web
build	13-Nov-2024 18:25:34	(Found 4 errors + 1740 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1741 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1742 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1745 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1746 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1747 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1748 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1749 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1752 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1754 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1762 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1763 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1764 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1769 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1771 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1772 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1775 warnings) Compiling jalview/src/jalview/jbgui
build	13-Nov-2024 18:25:34	(Found 4 errors + 1775 warnings) Compiling jalview/src/jalview/json/binding/biojs
build	13-Nov-2024 18:25:34	(Found 4 errors + 1775 warnings) Compiling jalview/src/jalview/json/binding/biojson/v1
build	13-Nov-2024 18:25:34	(Found 4 errors + 1778 warnings) Compiling jalview/src/jalview/log
build	13-Nov-2024 18:25:34	(Found 4 errors + 1780 warnings) Compiling jalview/src/jalview/log
build	13-Nov-2024 18:25:34	(Found 4 errors + 1781 warnings) Compiling jalview/src/jalview/log
build	13-Nov-2024 18:25:34	(Found 4 errors + 1781 warnings) Compiling jalview/src/jalview/math
build	13-Nov-2024 18:25:34	(Found 4 errors + 1782 warnings) Compiling jalview/src/jalview/math
build	13-Nov-2024 18:25:34	(Found 4 errors + 1783 warnings) Compiling jalview/src/jalview/math
build	13-Nov-2024 18:25:35	(Found 4 errors + 1809 warnings) Compiling jalview/src/jalview/project
build	13-Nov-2024 18:25:35	(Found 4 errors + 1810 warnings) Compiling jalview/src/jalview/renderer
build	13-Nov-2024 18:25:35	(Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/renderer
build	13-Nov-2024 18:25:35	(Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/renderer/api
build	13-Nov-2024 18:25:35	(Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/renderer/seqfeatures
build	13-Nov-2024 18:25:35	(Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/rest
build	13-Nov-2024 18:25:35	(Found 4 errors + 1811 warnings) Compiling jalview/src/jalview/schemes
build	13-Nov-2024 18:25:35	(Found 4 errors + 1814 warnings) Compiling jalview/src/jalview/schemes
build	13-Nov-2024 18:25:35	(Found 4 errors + 1814 warnings) Compiling jalview/src/jalview/structure
build	13-Nov-2024 18:25:35	(Found 4 errors + 1815 warnings) Compiling jalview/src/jalview/structure
build	13-Nov-2024 18:25:35	(Found 4 errors + 1816 warnings) Compiling jalview/src/jalview/structure
build	13-Nov-2024 18:25:35	(Found 4 errors + 1821 warnings) Compiling jalview/src/jalview/structure
build	13-Nov-2024 18:25:35	(Found 4 errors + 1822 warnings) Compiling jalview/src/jalview/structures/models
build	13-Nov-2024 18:25:35	(Found 4 errors + 1822 warnings) Compiling jalview/src/jalview/urls
build	13-Nov-2024 18:25:35	(Found 4 errors + 1823 warnings) Compiling jalview/src/jalview/urls
build	13-Nov-2024 18:25:35	(Found 4 errors + 1823 warnings) Compiling jalview/src/jalview/urls/api
build	13-Nov-2024 18:25:35	(Found 4 errors + 1823 warnings) Compiling jalview/src/jalview/urls/applet
build	13-Nov-2024 18:25:35	(Found 4 errors + 1823 warnings) Compiling jalview/src/jalview/urls/desktop
build	13-Nov-2024 18:25:35	(Found 4 errors + 1823 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1824 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1825 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1831 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1832 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1844 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1845 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1849 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1854 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1857 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1858 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1861 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1865 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1869 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1893 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/util/dialogrunner
build	13-Nov-2024 18:25:35	(Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/util/imagemaker
build	13-Nov-2024 18:25:35	(Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/util
build	13-Nov-2024 18:25:35	(Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/util/matcher
build	13-Nov-2024 18:25:35	(Found 4 errors + 1894 warnings) Compiling jalview/src/jalview/viewmodel
build	13-Nov-2024 18:25:35	(Found 4 errors + 1897 warnings) Compiling jalview/src/jalview/viewmodel
build	13-Nov-2024 18:25:35	(Found 4 errors + 1897 warnings) Compiling jalview/src/jalview/viewmodel/annotationfilter
build	13-Nov-2024 18:25:35	(Found 4 errors + 1898 warnings) Compiling jalview/src/jalview/viewmodel/seqfeatures
build	13-Nov-2024 18:25:35	(Found 4 errors + 1898 warnings) Compiling jalview/src/jalview/viewmodel/styles
build	13-Nov-2024 18:25:36	(Found 4 errors + 1898 warnings) Compiling jalview/src/jalview/workers
build	13-Nov-2024 18:25:36	(Found 4 errors + 1902 warnings) Compiling jalview/src/jalview/workers
build	13-Nov-2024 18:25:36	(Found 4 errors + 1902 warnings) Compiling jalview/src/jalview/ws
build	13-Nov-2024 18:25:36	(Found 4 errors + 1904 warnings) Compiling jalview/src/jalview/ws
build	13-Nov-2024 18:25:36	(Found 4 errors + 1908 warnings) Compiling jalview/src/jalview/ws
build	13-Nov-2024 18:25:36	(Found 4 errors + 1908 warnings) Compiling jalview/src/jalview/ws/datamodel
build	13-Nov-2024 18:25:36	(Found 4 errors + 1911 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold
build	13-Nov-2024 18:25:36	(Found 4 errors + 1916 warnings) Compiling jalview/src/jalview/ws/datamodel/alphafold
build	13-Nov-2024 18:25:36	(Found 4 errors + 1921 warnings) Compiling jalview/src/jalview/ws/dbsources
build	13-Nov-2024 18:25:36	(Found 4 errors + 1922 warnings) Compiling jalview/src/jalview/ws/dbsources
build	13-Nov-2024 18:25:36	(Found 4 errors + 1922 warnings) Compiling jalview/src/jalview/ws/ebi
build	13-Nov-2024 18:25:36	(Found 4 errors + 1922 warnings) Compiling jalview/src/jalview/ws/io/mime
build	13-Nov-2024 18:25:36	(Found 4 errors + 1922 warnings) Compiling jalview/src/jalview/ws/jws1
build	13-Nov-2024 18:25:36	(Found 4 errors + 1926 warnings) Compiling jalview/src/jalview/ws/jws1
build	13-Nov-2024 18:25:36	(Found 4 errors + 1934 warnings) Compiling jalview/src/jalview/ws/jws1
build	13-Nov-2024 18:25:36	(Found 4 errors + 1947 warnings) Compiling jalview/src/jalview/ws/jws1
build	13-Nov-2024 18:25:36	(Found 4 errors + 1961 warnings) Compiling jalview/src/jalview/ws/jws1
build	13-Nov-2024 18:25:36	(Found 4 errors + 1967 warnings) Compiling jalview/src/jalview/ws/jws1
build	13-Nov-2024 18:25:36	(Found 4 errors + 1968 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 1969 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 1979 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 1986 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2000 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2003 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2007 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2013 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2019 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2031 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2033 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2037 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2063 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2086 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2087 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2092 warnings) Compiling jalview/src/jalview/ws/jws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2098 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	13-Nov-2024 18:25:36	(Found 4 errors + 2102 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	13-Nov-2024 18:25:36	(Found 4 errors + 2105 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	13-Nov-2024 18:25:36	(Found 4 errors + 2116 warnings) Compiling jalview/src/jalview/ws/jws2/dm
build	13-Nov-2024 18:25:36	(Found 4 errors + 2123 warnings) Compiling jalview/src/jalview/ws/jws2/jabaws2
build	13-Nov-2024 18:25:36	(Found 4 errors + 2123 warnings) Compiling jalview/src/jalview/ws/params
build	13-Nov-2024 18:25:36	(Found 4 errors + 2124 warnings) Compiling jalview/src/jalview/ws/params
build	13-Nov-2024 18:25:36	(Found 4 errors + 2124 warnings) Compiling jalview/src/jalview/ws/params/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2125 warnings) Compiling jalview/src/jalview/ws/params/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2125 warnings) Compiling jalview/src/jalview/ws/rest
build	13-Nov-2024 18:25:36	(Found 4 errors + 2126 warnings) Compiling jalview/src/jalview/ws/rest
build	13-Nov-2024 18:25:36	(Found 4 errors + 2131 warnings) Compiling jalview/src/jalview/ws/rest
build	13-Nov-2024 18:25:36	(Found 4 errors + 2132 warnings) Compiling jalview/src/jalview/ws/rest
build	13-Nov-2024 18:25:36	(Found 4 errors + 2133 warnings) Compiling jalview/src/jalview/ws/rest
build	13-Nov-2024 18:25:36	(Found 4 errors + 2139 warnings) Compiling jalview/src/jalview/ws/rest
build	13-Nov-2024 18:25:36	(Found 4 errors + 2148 warnings) Compiling jalview/src/jalview/ws/rest
build	13-Nov-2024 18:25:36	(Found 4 errors + 2154 warnings) Compiling jalview/src/jalview/ws/rest
build	13-Nov-2024 18:25:36	(Found 4 errors + 2154 warnings) Compiling jalview/src/jalview/ws/rest/params
build	13-Nov-2024 18:25:36	(Found 4 errors + 2157 warnings) Compiling jalview/src/jalview/ws/seqfetcher
build	13-Nov-2024 18:25:36	(Found 4 errors + 2157 warnings) Compiling jalview/src/jalview/ws/sifts
build	13-Nov-2024 18:25:36	(Found 4 errors + 2159 warnings) Compiling jalview/src/jalview/ws/sifts
build	13-Nov-2024 18:25:36	(Found 4 errors + 2162 warnings) Compiling jalview/src/jalview/ws/uimodel
build	13-Nov-2024 18:25:36	(Found 4 errors + 2162 warnings) Compiling jalview/src/jalview/ws/utils
build	13-Nov-2024 18:25:36	(Found 4 errors + 2162 warnings) Compiling jalview/src/jalview/xml/binding/embl
build	13-Nov-2024 18:25:36	(Found 4 errors + 2162 warnings) Compiling jalview/src/jalview/xml/binding/jalview
build	13-Nov-2024 18:25:36	(Found 4 errors + 2162 warnings) Compiling jalview/src/jalview/xml/binding/sifts
build	13-Nov-2024 18:25:36	(Found 4 errors + 2162 warnings) Compiling jalview/src/jalview/xml/binding/uniprot
build	13-Nov-2024 18:25:36	(Found 4 errors + 2169 warnings) Compiling jalview/src/mc_view
build	13-Nov-2024 18:25:36	(Found 4 errors + 2170 warnings) Compiling jalview/src/mc_view
build	13-Nov-2024 18:25:36	(Found 4 errors + 2175 warnings) Compiling jalview/src/mc_view
build	13-Nov-2024 18:25:36	(Found 4 errors + 2182 warnings) Compiling jalview/src/mc_view
build	13-Nov-2024 18:25:36	(Found 4 errors + 2183 warnings) Compiling jalview/src/mc_view
build	13-Nov-2024 18:25:36	(Found 4 errors + 2184 warnings) Compiling jalview/src/mc_view
build	13-Nov-2024 18:25:36	(Found 4 errors + 2184 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	13-Nov-2024 18:25:36	(Found 4 errors + 2185 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	13-Nov-2024 18:25:36	(Found 4 errors + 2191 warnings) Compiling jalview/src/org/jibble/epsgraphics
build	13-Nov-2024 18:25:36	(Found 4 errors + 2191 warnings) Compiling jalview/src/org/json
build	13-Nov-2024 18:25:36	(Found 4 errors + 2193 warnings) Compiling jalview/src/org/json
build	13-Nov-2024 18:25:36	(Found 4 errors + 2194 warnings) Compiling jalview/src/org/json
build	13-Nov-2024 18:25:36	(Found 4 errors + 2205 warnings) Compiling jalview/src/org/json/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2211 warnings) Compiling jalview/src/org/json/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2220 warnings) Compiling jalview/src/org/json/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2222 warnings) Compiling jalview/src/org/json/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2224 warnings) Compiling jalview/src/org/json/simple/parser
build	13-Nov-2024 18:25:36	(Found 4 errors + 2299 warnings) Compiling jalview/src/org/json/simple/parser
build	13-Nov-2024 18:25:36	(Found 4 errors + 2303 warnings) Compiling jalview/src/org/json/simple/parser
build	13-Nov-2024 18:25:36	(Found 4 errors + 2303 warnings) Compiling jalview/src/org/stackoverflowusers/file
build	13-Nov-2024 18:25:36	(Found 4 errors + 2303 warnings) Compiling jalview/src/swingjs/api
build	13-Nov-2024 18:25:36	(Found 4 errors + 2303 warnings) Compiling jalview/src/swingjs/api/js
build	13-Nov-2024 18:25:36	(Found 4 errors + 2304 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	13-Nov-2024 18:25:36	(Found 4 errors + 2306 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	13-Nov-2024 18:25:36	(Found 4 errors + 2307 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	13-Nov-2024 18:25:36	(Found 4 errors + 2309 warnings) Compiling jalview/src/uk/ac/ebi/picr/model
build	13-Nov-2024 18:25:36	(Found 4 errors + 2312 warnings) Compiling jalview/src/uk/ac/ebi/www
build	13-Nov-2024 18:25:36	(Found 4 errors + 2315 warnings) Compiling jalview/src/uk/ac/ebi/www
build	13-Nov-2024 18:25:36	(Found 4 errors + 2318 warnings) Compiling jalview/src/uk/ac/ebi/www
build	13-Nov-2024 18:25:36	(Found 4 errors + 2325 warnings) Compiling jalview/src/uk/ac/ebi/www
build	13-Nov-2024 18:25:36	(Found 4 errors + 2373 warnings) Compiling jalview/src/uk/ac/ebi/www
build	13-Nov-2024 18:25:36	(Found 4 errors + 2415 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService
build	13-Nov-2024 18:25:36	(Found 4 errors + 2422 warnings) Compiling jalview/src/uk/ac/ebi/www/picr/AccessionMappingService
build	13-Nov-2024 18:25:36	(Found 4 errors + 2422 warnings) Compiling jalview/src/vamsas
build	13-Nov-2024 18:25:36	(Found 4 errors + 2423 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2425 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2426 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2428 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2429 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2431 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2432 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2434 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2435 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2437 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2438 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2440 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2441 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2443 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2444 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2446 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2447 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2448 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2450 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2452 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2453 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2455 warnings) Compiling jalview/src/vamsas/objects/simple
build	13-Nov-2024 18:25:36	(Found 4 errors + 2455 warnings) Cleaning output folder for jalview
build	13-Nov-2024 18:25:36	(Found 4 errors + 2455 warnings) Copying resources to the output folder
build	13-Nov-2024 18:25:37	(Found 4 errors + 2455 warnings) Analyzing sources
build	13-Nov-2024 18:25:37	J2S buildStarting 291 files, contexts.size() = 2, isBatch=true
build	13-Nov-2024 18:25:37	(Found 4 errors + 2455 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2463 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2465 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2478 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2491 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2492 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2494 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2535 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2537 warnings) Compiling jalview/test/jalview/analysis
build	13-Nov-2024 18:25:38	(Found 4 errors + 2537 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	13-Nov-2024 18:25:38	(Found 4 errors + 2542 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	13-Nov-2024 18:25:38	(Found 4 errors + 2543 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	13-Nov-2024 18:25:38	(Found 4 errors + 2549 warnings) Compiling jalview/test/jalview/analysis/scoremodels
build	13-Nov-2024 18:25:38	(Found 4 errors + 2550 warnings) Compiling jalview/test/jalview/bin
build	13-Nov-2024 18:25:38	(Found 4 errors + 2551 warnings) Compiling jalview/test/jalview/bin
build	13-Nov-2024 18:25:38	(Found 4 errors + 2552 warnings) Compiling jalview/test/jalview/bin
build	13-Nov-2024 18:25:38	(Found 4 errors + 2555 warnings) Compiling jalview/test/jalview/bin/argparser
build	13-Nov-2024 18:25:38	(Found 4 errors + 2562 warnings) Compiling jalview/test/jalview/commands
build	13-Nov-2024 18:25:38	(Found 4 errors + 2563 warnings) Compiling jalview/test/jalview/controller
build	13-Nov-2024 18:25:38	(Found 4 errors + 2563 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2564 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2577 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2578 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2580 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2589 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2590 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2592 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2593 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2595 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2596 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2597 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2600 warnings) Compiling jalview/test/jalview/datamodel
build	13-Nov-2024 18:25:38	(Found 4 errors + 2601 warnings) Compiling jalview/test/jalview/datamodel/features
build	13-Nov-2024 18:25:38	(Found 4 errors + 2602 warnings) Compiling jalview/test/jalview/datamodel/features
build	13-Nov-2024 18:25:38	(Found 4 errors + 2602 warnings) Compiling jalview/test/jalview/ext/android
build	13-Nov-2024 18:25:38	(Found 4 errors + 2602 warnings) Compiling jalview/test/jalview/ext/ensembl
build	13-Nov-2024 18:25:38	(Found 4 errors + 2602 warnings) Compiling jalview/test/jalview/ext/htsjdk
build	13-Nov-2024 18:25:38	(Found 4 errors + 2603 warnings) Compiling jalview/test/jalview/ext/jmol
build	13-Nov-2024 18:25:38	(Found 4 errors + 2604 warnings) Compiling jalview/test/jalview/ext/jmol
build	13-Nov-2024 18:25:38	(Found 4 errors + 2604 warnings) Compiling jalview/test/jalview/ext/paradise
build	13-Nov-2024 18:25:38	(Found 4 errors + 2604 warnings) Compiling jalview/test/jalview/ext/pymol
build	13-Nov-2024 18:25:38	(Found 4 errors + 2604 warnings) Compiling jalview/test/jalview/ext/rbvi/chimera
build	13-Nov-2024 18:25:39	(Found 4 errors + 2604 warnings) Compiling jalview/test/jalview/ext/so
build	13-Nov-2024 18:25:39	(Found 4 errors + 2604 warnings) Compiling jalview/test/jalview/fts/core
build	13-Nov-2024 18:25:39	(Found 4 errors + 2605 warnings) Compiling jalview/test/jalview/fts/service/pdb
build	13-Nov-2024 18:25:39	(Found 4 errors + 2606 warnings) Compiling jalview/test/jalview/fts/service/pdb
build	13-Nov-2024 18:25:39	(Found 4 errors + 2613 warnings) Compiling jalview/test/jalview/fts/threedbeacons
build	13-Nov-2024 18:25:39	(Found 4 errors + 2618 warnings) Compiling jalview/test/jalview/fts/threedbeacons
build	13-Nov-2024 18:25:39	(Found 4 errors + 2618 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2620 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2622 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2623 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2643 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2668 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2669 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2672 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2673 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2675 warnings) Compiling jalview/test/jalview/gui
build	13-Nov-2024 18:25:39	(Found 4 errors + 2681 warnings) Compiling jalview/test/jalview/gui/structurechooser
build	13-Nov-2024 18:25:39	(Found 4 errors + 2682 warnings) Compiling jalview/test/jalview/io
build	13-Nov-2024 18:25:39	(Found 4 errors + 2683 warnings) Compiling jalview/test/jalview/io
build	13-Nov-2024 18:25:39	(Found 4 errors + 2687 warnings) Compiling jalview/test/jalview/io
build	13-Nov-2024 18:25:39	(Found 4 errors + 2691 warnings) Compiling jalview/test/jalview/io
build	13-Nov-2024 18:25:39	(Found 4 errors + 2693 warnings) Compiling jalview/test/jalview/io
build	13-Nov-2024 18:25:39	(Found 4 errors + 2694 warnings) Compiling jalview/test/jalview/io
build	13-Nov-2024 18:25:39	(Found 4 errors + 2700 warnings) Compiling jalview/test/jalview/io
build	13-Nov-2024 18:25:39	(Found 4 errors + 2702 warnings) Compiling jalview/test/jalview/io
build	13-Nov-2024 18:25:39	(Found 4 errors + 2702 warnings) Compiling jalview/test/jalview/io/cache
build	13-Nov-2024 18:25:39	(Found 4 errors + 2702 warnings) Compiling jalview/test/jalview/io/gff
build	13-Nov-2024 18:25:39	(Found 4 errors + 2703 warnings) Compiling jalview/test/jalview/io/gff
build	13-Nov-2024 18:25:39	(Found 4 errors + 2712 warnings) Compiling jalview/test/jalview/io/vcf
build	13-Nov-2024 18:25:39	(Found 4 errors + 2712 warnings) Compiling jalview/test/jalview/math
build	13-Nov-2024 18:25:39	(Found 4 errors + 2716 warnings) Compiling jalview/test/jalview/project
build	13-Nov-2024 18:25:39	(Found 4 errors + 2717 warnings) Compiling jalview/test/jalview/renderer
build	13-Nov-2024 18:25:39	(Found 4 errors + 2724 warnings) Compiling jalview/test/jalview/renderer
build	13-Nov-2024 18:25:39	(Found 4 errors + 2724 warnings) Compiling jalview/test/jalview/renderer/seqfeatures
build	13-Nov-2024 18:25:39	(Found 4 errors + 2724 warnings) Compiling jalview/test/jalview/schemes
build	13-Nov-2024 18:25:39	(Found 4 errors + 2724 warnings) Compiling jalview/test/jalview/structure
build	13-Nov-2024 18:25:39	(Found 4 errors + 2726 warnings) Compiling jalview/test/jalview/structure
build	13-Nov-2024 18:25:39	(Found 4 errors + 2727 warnings) Compiling jalview/test/jalview/structure
build	13-Nov-2024 18:25:39	(Found 4 errors + 2728 warnings) Compiling jalview/test/jalview/structure
build	13-Nov-2024 18:25:39	(Found 4 errors + 2731 warnings) Compiling jalview/test/jalview/structure
build	13-Nov-2024 18:25:39	(Found 4 errors + 2731 warnings) Compiling jalview/test/jalview/structures/models
build	13-Nov-2024 18:25:39	(Found 4 errors + 2732 warnings) Compiling jalview/test/jalview/urls
build	13-Nov-2024 18:25:39	(Found 4 errors + 2737 warnings) Compiling jalview/test/jalview/urls
build	13-Nov-2024 18:25:39	(Found 4 errors + 2742 warnings) Compiling jalview/test/jalview/urls
build	13-Nov-2024 18:25:39	(Found 4 errors + 2742 warnings) Compiling jalview/test/jalview/util
build	13-Nov-2024 18:25:39	(Found 4 errors + 2749 warnings) Compiling jalview/test/jalview/util
build	13-Nov-2024 18:25:39	(Found 4 errors + 2750 warnings) Compiling jalview/test/jalview/util
build	13-Nov-2024 18:25:39	(Found 4 errors + 2754 warnings) Compiling jalview/test/jalview/util
build	13-Nov-2024 18:25:39	(Found 4 errors + 2755 warnings) Compiling jalview/test/jalview/util
build	13-Nov-2024 18:25:39	(Found 4 errors + 2760 warnings) Compiling jalview/test/jalview/util
build	13-Nov-2024 18:25:39	(Found 4 errors + 2760 warnings) Compiling jalview/test/jalview/util/dialogrunner
build	13-Nov-2024 18:25:39	(Found 4 errors + 2760 warnings) Compiling jalview/test/jalview/util/imagemaker
build	13-Nov-2024 18:25:39	(Found 4 errors + 2760 warnings) Compiling jalview/test/jalview/util/matcher
build	13-Nov-2024 18:25:39	(Found 4 errors + 2763 warnings) Compiling jalview/test/jalview/util/matcher
build	13-Nov-2024 18:25:39	(Found 4 errors + 2763 warnings) Compiling jalview/test/jalview/viewmodel
build	13-Nov-2024 18:25:40	(Found 4 errors + 2764 warnings) Compiling jalview/test/jalview/viewmodel/styles
build	13-Nov-2024 18:25:40	(Found 4 errors + 2764 warnings) Compiling jalview/test/jalview/workers
build	13-Nov-2024 18:25:40	(Found 4 errors + 2764 warnings) Compiling jalview/test/jalview/ws
build	13-Nov-2024 18:25:40	(Found 4 errors + 2766 warnings) Compiling jalview/test/jalview/ws
build	13-Nov-2024 18:25:40	(Found 4 errors + 2769 warnings) Compiling jalview/test/jalview/ws/dbsources
build	13-Nov-2024 18:25:40	(Found 4 errors + 2770 warnings) Compiling jalview/test/jalview/ws/dbsources
build	13-Nov-2024 18:25:40	(Found 4 errors + 2770 warnings) Compiling jalview/test/jalview/ws/ebi
build	13-Nov-2024 18:25:40	(Found 4 errors + 2777 warnings) Compiling jalview/test/jalview/ws/gui
build	13-Nov-2024 18:25:40	(Found 4 errors + 2777 warnings) Compiling jalview/test/jalview/ws/jabaws
build	13-Nov-2024 18:25:40	(Found 4 errors + 2778 warnings) Compiling jalview/test/jalview/ws/jabaws
build	13-Nov-2024 18:25:40	(Found 4 errors + 2779 warnings) Compiling jalview/test/jalview/ws/jabaws
build	13-Nov-2024 18:25:40	(Found 4 errors + 2783 warnings) Compiling jalview/test/jalview/ws/jabaws
build	13-Nov-2024 18:25:40	(Found 4 errors + 2798 warnings) Compiling jalview/test/jalview/ws/jws2
build	13-Nov-2024 18:25:40	(Found 4 errors + 2798 warnings) Compiling jalview/test/jalview/ws/rest
build	13-Nov-2024 18:25:40	(Found 4 errors + 2799 warnings) Compiling jalview/test/jalview/ws/rest
build	13-Nov-2024 18:25:40	(Found 4 errors + 2799 warnings) Compiling jalview/test/jalview/ws/seqfetcher
build	13-Nov-2024 18:25:40	(Found 4 errors + 2800 warnings) Compiling jalview/test/jalview/ws/sifts
build	13-Nov-2024 18:25:40	(Found 4 errors + 2802 warnings) Compiling jalview/test/jalview/ws/utils
build	13-Nov-2024 18:25:40	(Found 4 errors + 2818 warnings) Compiling jalview/test/junit/extensions
build	13-Nov-2024 18:25:40	(Found 4 errors + 2820 warnings) Compiling jalview/test/junit/extensions
build	13-Nov-2024 18:25:40	(Found 4 errors + 2820 warnings) Compiling jalview/test/mc_view
build	13-Nov-2024 18:25:40	(Found 4 errors + 2821 warnings) Compiling jalview/test/mc_view
build	13-Nov-2024 18:25:40	J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/.j2s
build	13-Nov-2024 18:25:40	j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename
build	13-Nov-2024 18:25:40	J2S System.getProperty("org.jalview.jalviewjsj2sfilename") = ./build/jalviewjs/config/j2s
build	13-Nov-2024 18:25:40	J2S using configuration file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/config/j2s
build	13-Nov-2024 18:25:40	j2s.compiler.status = enable
build	13-Nov-2024 18:25:40	j2s.compiler.java.version = 8
build	13-Nov-2024 18:25:40	J2S compiler version set to 8
build	13-Nov-2024 18:25:40	j2s.break.on.error = false
build	13-Nov-2024 18:25:40	j2s.exact.long = true
build	13-Nov-2024 18:25:40	j2s.async.thread = false
build	13-Nov-2024 18:25:40	j2s.compiler.mode = nodebug
build	13-Nov-2024 18:25:40	j2s.site.directory = ./build/jalviewjs/tmp/site_js
build	13-Nov-2024 18:25:40	J2S writing to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s
build	13-Nov-2024 18:25:40	j2s.log.methods.declared = <no log file>
build	13-Nov-2024 18:25:40	j2s.log.methods.called = <no log file>
build	13-Nov-2024 18:25:40	j2s.excluded.paths = test;testng;util
build	13-Nov-2024 18:25:40	j2s.compiler.read.annotations = true
build	13-Nov-2024 18:25:40	j2s.compiler.ignored.annotations = CallerSensitive;ConstructorProperties;Deprecated;Override;SafeVarargs;SuppressWarnings;FunctionalInterface;Documented;Inherited;Native;Repeatable;Retention;
build	13-Nov-2024 18:25:40	j2s.testing = false
build	13-Nov-2024 18:25:40	j2s.compiler.nonqualified.packages = <none>
build	13-Nov-2024 18:25:40	j2s.compiler.nonqualified.classes = <none>
build	13-Nov-2024 18:25:40	j2s.class.replacements = <none>
build	13-Nov-2024 18:25:40	j2s.template.html = utils/jalviewjs/template.html
build	13-Nov-2024 18:25:40	J2S using HTML template /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/utils/jalviewjs/template.html
build	13-Nov-2024 18:25:40	J2S building JavaScript jalview /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1 Wed Nov 13 18:25:40 GMT 2024
build	13-Nov-2024 18:25:40	J2S building JavaScript for 1103 files
build	13-Nov-2024 18:25:40	J2S transpiling (1/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/github/reinert/jjschema/Attributes.java
build	13-Nov-2024 18:25:40	j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/com
build	13-Nov-2024 18:25:40	J2S transpiling (2/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/AmpersandRule.java
build	13-Nov-2024 18:25:40	J2S transpiling (3/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Any.java
build	13-Nov-2024 18:25:40	J2S transpiling (4/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/BackG.java
build	13-Nov-2024 18:25:40	J2S transpiling (5/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/BackMatch.java
build	13-Nov-2024 18:25:40	J2S transpiling (6/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/BackRefRule.java
build	13-Nov-2024 18:25:40	J2S transpiling (7/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Backup.java
build	13-Nov-2024 18:25:40	J2S transpiling (8/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/BasicStringBufferLike.java
build	13-Nov-2024 18:25:40	J2S transpiling (9/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Bits.java
build	13-Nov-2024 18:25:41	J2S transpiling (10/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Boundary.java
build	13-Nov-2024 18:25:41	J2S transpiling (11/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Bracket.java
build	13-Nov-2024 18:25:41	J2S transpiling (12/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/CaseMgr.java
build	13-Nov-2024 18:25:41	J2S transpiling (13/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/ChangeRule.java
build	13-Nov-2024 18:25:41	J2S transpiling (14/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/CodeRule.java
build	13-Nov-2024 18:25:41	J2S transpiling (15/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Ctrl.java
build	13-Nov-2024 18:25:41	J2S transpiling (16/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Custom.java
build	13-Nov-2024 18:25:41	J2S transpiling (17/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/CustomEndpoint.java
build	13-Nov-2024 18:25:41	J2S transpiling (18/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/DirFileRegex.java
build	13-Nov-2024 18:25:41	J2S transpiling (19/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/DotMulti.java
build	13-Nov-2024 18:25:41	J2S transpiling (20/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/End.java
build	13-Nov-2024 18:25:41	J2S transpiling (21/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/FastBracket.java
build	13-Nov-2024 18:25:41	J2S transpiling (22/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/FastMulti.java
build	13-Nov-2024 18:25:41	J2S transpiling (23/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/FileRegex.java
build	13-Nov-2024 18:25:41	J2S transpiling (24/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Group.java
build	13-Nov-2024 18:25:41	J2S transpiling (25/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/LeftRule.java
build	13-Nov-2024 18:25:41	J2S transpiling (26/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Multi.java
build	13-Nov-2024 18:25:41	J2S transpiling (27/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/MultiMin.java
build	13-Nov-2024 18:25:41	J2S transpiling (28/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Multi_stage2.java
build	13-Nov-2024 18:25:41	J2S transpiling (29/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/NoPattern.java
build	13-Nov-2024 18:25:41	J2S transpiling (30/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/NonDirFileRegex.java
build	13-Nov-2024 18:25:41	J2S transpiling (31/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/NotImplementedError.java
build	13-Nov-2024 18:25:41	J2S transpiling (32/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/NullPattern.java
build	13-Nov-2024 18:25:41	J2S transpiling (33/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/NullRule.java
build	13-Nov-2024 18:25:41	J2S transpiling (34/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Or.java
build	13-Nov-2024 18:25:41	J2S transpiling (35/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/OrMark.java
build	13-Nov-2024 18:25:41	J2S transpiling (36/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/PartialBuffer.java
build	13-Nov-2024 18:25:41	J2S transpiling (37/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Pattern.java
build	13-Nov-2024 18:25:41	J2S transpiling (38/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/PatternSub.java
build	13-Nov-2024 18:25:41	J2S transpiling (39/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/PopRule.java
build	13-Nov-2024 18:25:41	J2S transpiling (40/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Prop.java
build	13-Nov-2024 18:25:41	J2S transpiling (41/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Pthings.java
build	13-Nov-2024 18:25:41	J2S transpiling (42/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/PushRule.java
build	13-Nov-2024 18:25:41	J2S transpiling (43/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RBuffer.java
build	13-Nov-2024 18:25:41	J2S transpiling (44/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Range.java
build	13-Nov-2024 18:25:41	J2S transpiling (45/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RegOpt.java
build	13-Nov-2024 18:25:41	J2S transpiling (46/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RegRes.java
build	13-Nov-2024 18:25:41	J2S transpiling (47/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RegSyntax.java
build	13-Nov-2024 18:25:41	J2S transpiling (48/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RegSyntaxError.java
build	13-Nov-2024 18:25:41	J2S transpiling (49/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Regex.java
build	13-Nov-2024 18:25:42	J2S transpiling (50/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RegexReader.java
build	13-Nov-2024 18:25:42	J2S transpiling (51/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RegexTokenizer.java
build	13-Nov-2024 18:25:42	J2S transpiling (52/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RegexWriter.java
build	13-Nov-2024 18:25:42	>>>main found for com.stevesoft.pat.RegexWriter
build	13-Nov-2024 18:25:42	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/com_stevesoft_pat_RegexWriter.html
build	13-Nov-2024 18:25:42	J2S transpiling (53/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/ReplaceRule.java
build	13-Nov-2024 18:25:42	J2S transpiling (54/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Replacer.java
build	13-Nov-2024 18:25:42	J2S transpiling (55/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RightRule.java
build	13-Nov-2024 18:25:42	J2S transpiling (56/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Rthings.java
build	13-Nov-2024 18:25:42	J2S transpiling (57/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/RuleHolder.java
build	13-Nov-2024 18:25:42	J2S transpiling (58/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Skip.java
build	13-Nov-2024 18:25:42	J2S transpiling (59/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Skip2.java
build	13-Nov-2024 18:25:42	J2S transpiling (60/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/SkipBMH.java
build	13-Nov-2024 18:25:42	J2S transpiling (61/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Skipped.java
build	13-Nov-2024 18:25:42	J2S transpiling (62/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/SpecialRule.java
build	13-Nov-2024 18:25:42	J2S transpiling (63/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Start.java
build	13-Nov-2024 18:25:42	J2S transpiling (64/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/StrPos.java
build	13-Nov-2024 18:25:42	J2S transpiling (65/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/StringBufferLike.java
build	13-Nov-2024 18:25:42	J2S transpiling (66/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/StringLike.java
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build	13-Nov-2024 18:25:42	J2S transpiling (68/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/SubMark.java
build	13-Nov-2024 18:25:42	J2S transpiling (69/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/TransPat.java
build	13-Nov-2024 18:25:42	J2S transpiling (70/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Transformer.java
build	13-Nov-2024 18:25:42	J2S transpiling (71/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/UniValidator.java
build	13-Nov-2024 18:25:42	J2S transpiling (72/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/Validator.java
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build	13-Nov-2024 18:25:42	J2S transpiling (74/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/lookAhead.java
build	13-Nov-2024 18:25:42	J2S transpiling (75/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/oneChar.java
build	13-Nov-2024 18:25:42	J2S transpiling (76/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/parsePerl.java
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build	13-Nov-2024 18:25:42	J2S transpiling (79/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/wrap/CharArrayBufferWrap.java
build	13-Nov-2024 18:25:42	J2S transpiling (80/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/wrap/CharArrayWrap.java
build	13-Nov-2024 18:25:42	J2S transpiling (81/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/wrap/RandomAccessFileWrap.java
build	13-Nov-2024 18:25:42	J2S transpiling (82/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/com/stevesoft/pat/wrap/StringBufferWrap.java
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build	13-Nov-2024 18:25:42	J2S transpiling (85/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/darrylbu/util/SwingUtils.java
build	13-Nov-2024 18:25:42	j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/darrylbu to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/darrylbu
build	13-Nov-2024 18:25:42	J2S transpiling (86/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimUtils.java
build	13-Nov-2024 18:25:42	j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/ext to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/ext
build	13-Nov-2024 18:25:42	J2S transpiling (87/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraChain.java
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build	13-Nov-2024 18:25:43	J2S transpiling (96/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/ext/vamsas/IRegistry.java
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build	13-Nov-2024 18:25:43	J2S transpiling (99/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/ext/vamsas/Jpred.java
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build	13-Nov-2024 18:25:43	J2S transpiling (103/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/ext/vamsas/MuscleWS.java
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build	13-Nov-2024 18:25:43	J2S transpiling (107/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/ext/vamsas/RegistryServiceSoapBindingStub.java
build	13-Nov-2024 18:25:43	J2S transpiling (108/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/ext/vamsas/SeqSearchI.java
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build	13-Nov-2024 18:25:43	j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/jalview
build	13-Nov-2024 18:25:43	J2S transpiling (115/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/AlignSeq.java
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build	13-Nov-2024 18:25:44	J2S transpiling (120/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/AverageDistanceEngine.java
build	13-Nov-2024 18:25:44	J2S transpiling (121/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/AverageDistanceTree.java
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build	13-Nov-2024 18:25:44	J2S transpiling (127/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/CrossRef.java
build	13-Nov-2024 18:25:44	J2S transpiling (128/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/Dna.java
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build	13-Nov-2024 18:25:45	J2S transpiling (151/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/scoremodels/ScoreModels.java
build	13-Nov-2024 18:25:45	J2S transpiling (152/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/scoremodels/SecondaryStructureDistanceModel.java
build	13-Nov-2024 18:25:45	J2S transpiling (153/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/scoremodels/SimilarityParams.java
build	13-Nov-2024 18:25:45	J2S transpiling (154/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/scoremodels/SimilarityScoreModel.java
build	13-Nov-2024 18:25:45	J2S transpiling (155/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analysis/scoremodels/SmithWatermanModel.java
build	13-Nov-2024 18:25:45	J2S transpiling (156/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/analytics/Plausible.java
build	13-Nov-2024 18:25:45	J2S transpiling (157/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignCalcManagerI.java
build	13-Nov-2024 18:25:45	J2S transpiling (158/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignCalcWorkerI.java
build	13-Nov-2024 18:25:45	J2S transpiling (159/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignExportSettingsI.java
build	13-Nov-2024 18:25:45	J2S transpiling (160/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignViewControllerGuiI.java
build	13-Nov-2024 18:25:45	J2S transpiling (161/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignViewControllerI.java
build	13-Nov-2024 18:25:45	J2S transpiling (162/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignViewportI.java
build	13-Nov-2024 18:25:45	J2S transpiling (163/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignmentColsCollectionI.java
build	13-Nov-2024 18:25:45	J2S transpiling (164/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignmentRowsCollectionI.java
build	13-Nov-2024 18:25:45	J2S transpiling (165/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/AlignmentViewPanel.java
build	13-Nov-2024 18:25:45	J2S transpiling (166/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/BuildDetailsI.java
build	13-Nov-2024 18:25:45	J2S transpiling (167/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/ComplexAlignFile.java
build	13-Nov-2024 18:25:45	J2S transpiling (168/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/DBRefEntryI.java
build	13-Nov-2024 18:25:45	J2S transpiling (169/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/FeatureColourI.java
build	13-Nov-2024 18:25:45	J2S transpiling (170/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/FeatureRenderer.java
build	13-Nov-2024 18:25:45	J2S transpiling (171/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/FeatureSettingsControllerI.java
build	13-Nov-2024 18:25:45	J2S transpiling (172/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/FeatureSettingsModelI.java
build	13-Nov-2024 18:25:45	J2S transpiling (173/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/FeaturesDisplayedI.java
build	13-Nov-2024 18:25:45	J2S transpiling (174/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/FeaturesSourceI.java
build	13-Nov-2024 18:25:45	J2S transpiling (175/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/FinderI.java
build	13-Nov-2024 18:25:45	J2S transpiling (176/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/OOMHandlerI.java
build	13-Nov-2024 18:25:45	J2S transpiling (177/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/RendererListenerI.java
build	13-Nov-2024 18:25:45	J2S transpiling (178/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/RotatableCanvasI.java
build	13-Nov-2024 18:25:45	J2S transpiling (179/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/SequenceRenderer.java
build	13-Nov-2024 18:25:45	J2S transpiling (180/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/SequenceStructureBinding.java
build	13-Nov-2024 18:25:45	J2S transpiling (181/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/SiftsClientI.java
build	13-Nov-2024 18:25:45	J2S transpiling (182/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/SplitContainerI.java
build	13-Nov-2024 18:25:45	J2S transpiling (183/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/StructureSelectionManagerProvider.java
build	13-Nov-2024 18:25:45	J2S transpiling (184/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/ViewStyleI.java
build	13-Nov-2024 18:25:45	J2S transpiling (185/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/analysis/PairwiseScoreModelI.java
build	13-Nov-2024 18:25:45	J2S transpiling (186/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/analysis/ScoreModelI.java
build	13-Nov-2024 18:25:45	J2S transpiling (187/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/analysis/SimilarityParamsI.java
build	13-Nov-2024 18:25:45	J2S transpiling (188/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/api/structures/JalviewStructureDisplayI.java
build	13-Nov-2024 18:25:45	J2S transpiling (189/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/APopupMenu.java
build	13-Nov-2024 18:25:45	J2S transpiling (190/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AlignFrame.java
build	13-Nov-2024 18:25:46	J2S transpiling (191/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AlignViewport.java
build	13-Nov-2024 18:25:46	J2S transpiling (192/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AlignmentPanel.java
build	13-Nov-2024 18:25:46	J2S transpiling (193/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AnnotationColourChooser.java
build	13-Nov-2024 18:25:46	J2S transpiling (194/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AnnotationColumnChooser.java
build	13-Nov-2024 18:25:46	J2S transpiling (195/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AnnotationLabels.java
build	13-Nov-2024 18:25:46	J2S transpiling (196/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AnnotationPanel.java
build	13-Nov-2024 18:25:46	J2S transpiling (197/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AnnotationRowFilter.java
build	13-Nov-2024 18:25:46	J2S transpiling (198/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AppletJmol.java
build	13-Nov-2024 18:25:47	J2S transpiling (199/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/AppletJmolBinding.java
build	13-Nov-2024 18:25:47	J2S transpiling (200/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/CutAndPasteTransfer.java
build	13-Nov-2024 18:25:47	J2S transpiling (201/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/EditNameDialog.java
build	13-Nov-2024 18:25:47	J2S transpiling (202/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/EmbmenuFrame.java
build	13-Nov-2024 18:25:47	J2S transpiling (203/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/ExtJmol.java
build	13-Nov-2024 18:25:47	J2S transpiling (204/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/FeatureColourChooser.java
build	13-Nov-2024 18:25:47	J2S transpiling (205/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/FeatureRenderer.java
build	13-Nov-2024 18:25:47	J2S transpiling (206/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/FeatureSettings.java
build	13-Nov-2024 18:25:47	J2S transpiling (207/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/Finder.java
build	13-Nov-2024 18:25:47	J2S transpiling (208/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/FontChooser.java
build	13-Nov-2024 18:25:47	J2S transpiling (209/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/IdCanvas.java
build	13-Nov-2024 18:25:47	J2S transpiling (210/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/IdPanel.java
build	13-Nov-2024 18:25:47	J2S transpiling (211/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/IdwidthAdjuster.java
build	13-Nov-2024 18:25:47	J2S transpiling (212/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/JVDialog.java
build	13-Nov-2024 18:25:47	J2S transpiling (213/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/OverviewCanvas.java
build	13-Nov-2024 18:25:47	>>class jalview.appletgui.OverviewCanvas extended java.awt.Component now extends java.awt.Label
build	13-Nov-2024 18:25:47	J2S transpiling (214/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/OverviewPanel.java
build	13-Nov-2024 18:25:47	J2S transpiling (215/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/PCAPanel.java
build	13-Nov-2024 18:25:48	J2S transpiling (216/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/PaintRefresher.java
build	13-Nov-2024 18:25:48	J2S transpiling (217/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/PairwiseAlignPanel.java
build	13-Nov-2024 18:25:48	J2S transpiling (218/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/RedundancyPanel.java
build	13-Nov-2024 18:25:48	J2S transpiling (219/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/RotatableCanvas.java
build	13-Nov-2024 18:25:48	J2S transpiling (220/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/ScalePanel.java
build	13-Nov-2024 18:25:48	J2S transpiling (221/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/SeqCanvas.java
build	13-Nov-2024 18:25:48	J2S transpiling (222/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/SeqPanel.java
build	13-Nov-2024 18:25:48	J2S transpiling (223/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/SequenceRenderer.java
build	13-Nov-2024 18:25:48	J2S transpiling (224/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/SliderPanel.java
build	13-Nov-2024 18:25:48	J2S transpiling (225/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/SplitFrame.java
build	13-Nov-2024 18:25:48	J2S transpiling (226/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/TitledPanel.java
build	13-Nov-2024 18:25:48	J2S transpiling (227/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/Tooltip.java
build	13-Nov-2024 18:25:48	J2S transpiling (228/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/TreeCanvas.java
build	13-Nov-2024 18:25:48	J2S transpiling (229/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/TreePanel.java
build	13-Nov-2024 18:25:48	J2S transpiling (230/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/appletgui/UserDefinedColours.java
build	13-Nov-2024 18:25:48	J2S transpiling (231/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/ArgsParser.java
build	13-Nov-2024 18:25:48	J2S transpiling (232/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/BuildDetails.java
build	13-Nov-2024 18:25:48	J2S transpiling (233/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/Cache.java
build	13-Nov-2024 18:25:49	J2S transpiling (234/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/Commands.java
build	13-Nov-2024 18:25:49	J2S transpiling (235/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/Console.java
build	13-Nov-2024 18:25:49	J2S transpiling (236/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/GetMemory.java
build	13-Nov-2024 18:25:49	J2S transpiling (237/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/GetdownLauncherUpdate.java
build	13-Nov-2024 18:25:49	>>>main found for jalview.bin.GetdownLauncherUpdate
build	13-Nov-2024 18:25:49	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_GetdownLauncherUpdate.html
build	13-Nov-2024 18:25:49	J2S transpiling (238/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/HiDPISetting.java
build	13-Nov-2024 18:25:49	J2S transpiling (239/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/Jalview.java
build	13-Nov-2024 18:25:49	>>>main found for jalview.bin.Jalview
build	13-Nov-2024 18:25:49	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_Jalview.html
build	13-Nov-2024 18:25:49	J2S transpiling (240/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/JalviewJS2.java
build	13-Nov-2024 18:25:49	>>>main found for jalview.bin.JalviewJS2
build	13-Nov-2024 18:25:49	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewJS2.html
build	13-Nov-2024 18:25:49	J2S transpiling (241/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/JalviewLite.java
build	13-Nov-2024 18:25:50	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewLite_applet.html
build	13-Nov-2024 18:25:50	J2S transpiling (242/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/JalviewLiteURLRetrieve.java
build	13-Nov-2024 18:25:50	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_JalviewLiteURLRetrieve_applet.html
build	13-Nov-2024 18:25:50	J2S transpiling (243/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/JalviewTaskbar.java
build	13-Nov-2024 18:25:50	J2S transpiling (244/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/Launcher.java
build	13-Nov-2024 18:25:50	>>>main found for jalview.bin.Launcher
build	13-Nov-2024 18:25:50	J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/./build/jalviewjs/tmp/site_js/jalview_bin_Launcher.html
build	13-Nov-2024 18:25:50	J2S transpiling (245/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/MemorySetting.java
build	13-Nov-2024 18:25:50	J2S transpiling (246/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/ScreenInfo.java
build	13-Nov-2024 18:25:50	J2S transpiling (247/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/argparser/Arg.java
build	13-Nov-2024 18:25:50	J2S transpiling (248/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/argparser/ArgParser.java
build	13-Nov-2024 18:25:50	J2S transpiling (249/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/argparser/ArgValue.java
build	13-Nov-2024 18:25:50	J2S transpiling (250/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/argparser/ArgValues.java
build	13-Nov-2024 18:25:50	J2S transpiling (251/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/argparser/ArgValuesMap.java
build	13-Nov-2024 18:25:50	J2S transpiling (252/1103) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/src/jalview/bin/argparser/BootstrapArgs.java
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build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/FileUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/FormatTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/HttpUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/ImageMakerTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/JSONUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/LaunchUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/Log4jTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/MapListTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/MappingUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/MathUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/MessageManagerTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/ParseHtmlBodyAndLinksTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/PlatformTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/QuickSortTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/SetUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/ShiftListTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/SparseCountTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/StringUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/UrlLinkTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/dialogrunner/DialogRunnerTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/imagemaker/BitmapImageSizeTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/matcher/ConditionTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/util/matcher/MatcherTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/viewmodel/OverviewDimensionsHideHiddenTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/viewmodel/OverviewDimensionsShowHiddenTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/viewmodel/ViewportRangesTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/viewmodel/styles/ViewStyleTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/workers/AlignCalcManagerTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/PDBSequenceFetcherTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/SequenceFetcherTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/EmblXmlSourceTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/PfamFullTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/PfamSeedTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/RemoteFormatTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/RfamFullTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/RfamSeedTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/UniprotTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/dbsources/XfamFetcherTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/ebi/EBIFetchClientTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/gui/Jws2ParamView.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/jabaws/MinJabawsClientTests.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/jabaws/RNAStructExportImport.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/jws2/ParameterUtilsTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/rest/RestClientTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/rest/ShmmrRSBSService.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/sifts/SiftsClientTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/jalview/ws/utils/UrlDownloadClientTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/junit/extensions/PA.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/junit/extensions/PrivilegedAccessor.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/mc_view/AtomTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/mc_view/BondTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/mc_view/PDBChainTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/mc_view/PDBfileTest.java
build	13-Nov-2024 18:26:11	J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/test/mc_view/ResidueTest.java
build	13-Nov-2024 18:26:11	J2S processed 1103 .java files, created 1134 .js files and 7 .html files, copied 6 resources
build	13-Nov-2024 18:26:11	J2S buildFinished 1103 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1
build	13-Nov-2024 18:26:11	J2S buildFinished nerror = 0 Wed Nov 13 18:26:11 GMT 2024
build	13-Nov-2024 18:26:11	(Found 4 errors + 2821 warnings) Build done
build	13-Nov-2024 18:26:11	Invoking 'Gradle Project Builder' on '/jalview'.
error	13-Nov-2024 18:26:34	
error	13-Nov-2024 18:26:34	FAILURE: Build failed with an exception.
error	13-Nov-2024 18:26:34	
error	13-Nov-2024 18:26:34	* What went wrong:
error	13-Nov-2024 18:26:34	org/gradle/api/plugins/MavenPlugin
error	13-Nov-2024 18:26:34	> org.gradle.api.plugins.MavenPlugin
error	13-Nov-2024 18:26:34	
error	13-Nov-2024 18:26:34	* Try:
build	13-Nov-2024 18:26:34	
build	13-Nov-2024 18:26:34	Deprecated Gradle features were used in this build, making it incompatible with Gradle 9.0.
build	13-Nov-2024 18:26:34	
build	13-Nov-2024 18:26:34	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	13-Nov-2024 18:26:34	
build	13-Nov-2024 18:26:34	See https://docs.gradle.org/8.1.1/userguide/command_line_interface.html#sec:command_line_warnings
error	13-Nov-2024 18:26:34	> Run with --stacktrace option to get the stack trace.
error	13-Nov-2024 18:26:34	> Run with --info or --debug option to get more log output.
error	13-Nov-2024 18:26:34	> Run with --scan to get full insights.
error	13-Nov-2024 18:26:34	
error	13-Nov-2024 18:26:34	* Get more help at https://help.gradle.org
error	13-Nov-2024 18:26:34	
error	13-Nov-2024 18:26:34	CONFIGURE FAILED in 21s
error	13-Nov-2024 18:26:34	Job found still running after platform shutdown.  Jobs should be canceled by the plugin that scheduled them during shutdown: org.eclipse.wst.jsdt.internal.core.JavaModelManager$13
error	13-Nov-2024 18:26:34	Job found still running after platform shutdown.  Jobs should be canceled by the plugin that scheduled them during shutdown: org.eclipse.wst.jsdt.internal.core.JavaModelManager$13
build	13-Nov-2024 18:26:35	Invalidating in-memory cache of /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/.gradle/buildOutputCleanup/outputFiles.bin
build	13-Nov-2024 18:26:35	:jalviewjsTranspile (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 1 mins 25.728 secs.
build	13-Nov-2024 18:26:35	:jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:35	
build	13-Nov-2024 18:26:35	> Task :jalviewjsCopyTransferSiteJs
build	13-Nov-2024 18:26:35	Caching disabled for task ':jalviewjsCopyTransferSiteJs' because:
build	13-Nov-2024 18:26:35	  Build cache is disabled
build	13-Nov-2024 18:26:35	Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because:
build	13-Nov-2024 18:26:35	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site has been removed.
build	13-Nov-2024 18:26:35	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed.
build	13-Nov-2024 18:26:35	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_GetdownLauncherUpdate.html has been removed.
build	13-Nov-2024 18:26:35	:jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.244 secs.
build	13-Nov-2024 18:26:35	:jalviewjsTransferUnzipLib (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:36	
build	13-Nov-2024 18:26:36	> Task :jalviewjsTransferUnzipLib
build	13-Nov-2024 18:26:36	Caching disabled for task ':jalviewjsTransferUnzipLib' because:
build	13-Nov-2024 18:26:36	  Build cache is disabled
build	13-Nov-2024 18:26:36	Task ':jalviewjsTransferUnzipLib' is not up-to-date because:
build	13-Nov-2024 18:26:36	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_lib has been removed.
build	13-Nov-2024 18:26:36	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_AlignmentDemo.html has been removed.
build	13-Nov-2024 18:26:36	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_fragseq_FragSeqGUI.html has been removed.
build	13-Nov-2024 18:26:36	:jalviewjsTransferUnzipLib (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.7 secs.
build	13-Nov-2024 18:26:36	:jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:37	
build	13-Nov-2024 18:26:37	> Task :jalviewjsTransferUnzipSwingJs
build	13-Nov-2024 18:26:37	Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because:
build	13-Nov-2024 18:26:37	  Build cache is disabled
build	13-Nov-2024 18:26:37	Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because:
build	13-Nov-2024 18:26:37	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_swingjs has been removed.
build	13-Nov-2024 18:26:37	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_swingjs/___j2sflags.htm has been removed.
build	13-Nov-2024 18:26:37	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_swingjs/debug.log has been removed.
build	13-Nov-2024 18:26:37	:jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 1.138 secs.
build	13-Nov-2024 18:26:37	:jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:37	
build	13-Nov-2024 18:26:37	> Task :jalviewjsTransferUnzipAllLibs
build	13-Nov-2024 18:26:37	Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions.
build	13-Nov-2024 18:26:37	:jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:26:37	:jalviewjsSyncAllLibs (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:38	
build	13-Nov-2024 18:26:38	> Task :jalviewjsSyncAllLibs
build	13-Nov-2024 18:26:38	Caching disabled for task ':jalviewjsSyncAllLibs' because:
build	13-Nov-2024 18:26:38	  Build cache is disabled
build	13-Nov-2024 18:26:38	Task ':jalviewjsSyncAllLibs' is not up-to-date because:
build	13-Nov-2024 18:26:38	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CDL.js has changed.
build	13-Nov-2024 18:26:38	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/Cookie.js has changed.
build	13-Nov-2024 18:26:38	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CookieList.js has changed.
build	13-Nov-2024 18:26:38	:jalviewjsSyncAllLibs (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 1.307 secs.
build	13-Nov-2024 18:26:38	:copyResources (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:38	
build	13-Nov-2024 18:26:38	> Task :copyResources
build	13-Nov-2024 18:26:38	Caching disabled for task ':copyResources' because:
build	13-Nov-2024 18:26:38	  Build cache is disabled
build	13-Nov-2024 18:26:38	Task ':copyResources' is not up-to-date because:
build	13-Nov-2024 18:26:38	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/resources/resources_build has been removed.
build	13-Nov-2024 18:26:38	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/resources/resources_build/.build_properties has been removed.
build	13-Nov-2024 18:26:38	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/resources/resources_build/AmbiguityCodes.dat has been removed.
build	13-Nov-2024 18:26:38	:copyResources (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.306 secs.
build	13-Nov-2024 18:26:38	:createBuildProperties (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:38	
build	13-Nov-2024 18:26:38	> Task :createBuildProperties
build	13-Nov-2024 18:26:38	Caching disabled for task ':createBuildProperties' because:
build	13-Nov-2024 18:26:38	  Build cache is disabled
build	13-Nov-2024 18:26:38	Task ':createBuildProperties' is not up-to-date because:
build	13-Nov-2024 18:26:38	  Value of input property 'comment' has changed for task ':createBuildProperties'
build	13-Nov-2024 18:26:38	  Value of input property 'properties' has changed for task ':createBuildProperties'
build	13-Nov-2024 18:26:38	:createBuildProperties (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.006 secs.
build	13-Nov-2024 18:26:38	:jalviewjsSyncBuildProperties (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:39	
build	13-Nov-2024 18:26:39	> Task :jalviewjsSyncBuildProperties
build	13-Nov-2024 18:26:39	Caching disabled for task ':jalviewjsSyncBuildProperties' because:
build	13-Nov-2024 18:26:39	  Build cache is disabled
build	13-Nov-2024 18:26:39	Task ':jalviewjsSyncBuildProperties' is not up-to-date because:
build	13-Nov-2024 18:26:39	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed.
build	13-Nov-2024 18:26:39	:jalviewjsSyncBuildProperties (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.111 secs.
build	13-Nov-2024 18:26:39	:jalviewjsBuildAllCores (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:41	
build	13-Nov-2024 18:26:41	> Task :jalviewjsBuildAllCores
build	13-Nov-2024 18:26:41	Execution optimizations have been disabled for task ':jalviewjsBuildAllCores' to ensure correctness due to the following reasons:
build	13-Nov-2024 18:26:41	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_lib/swingjs/j2s'. Reason: Task ':jalviewjsBuildAllCores' uses this output of task ':jalviewjsTransferUnzipLib' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	13-Nov-2024 18:26:41	Invalidating VFS because task ':jalviewjsBuildAllCores' failed validation
build	13-Nov-2024 18:26:41	Caching disabled for task ':jalviewjsBuildAllCores' because:
build	13-Nov-2024 18:26:41	  Build cache is disabled
build	13-Nov-2024 18:26:41	Task ':jalviewjsBuildAllCores' is not up-to-date because:
build	13-Nov-2024 18:26:41	  Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build	13-Nov-2024 18:26:41	Creating core for jalview...
build	13-Nov-2024 18:26:41	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js
build	13-Nov-2024 18:26:41	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js
build	13-Nov-2024 18:26:41	
build	13-Nov-2024 18:26:41	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js'
build	13-Nov-2024 18:26:41	
build	13-Nov-2024 18:26:41	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js
build	13-Nov-2024 18:26:41	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	13-Nov-2024 18:26:50	--
build	13-Nov-2024 18:26:50	Creating core for jvexamplefile...
build	13-Nov-2024 18:26:50	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js
build	13-Nov-2024 18:26:50	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js
build	13-Nov-2024 18:26:50	
build	13-Nov-2024 18:26:50	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js'
build	13-Nov-2024 18:26:50	
build	13-Nov-2024 18:26:50	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js
build	13-Nov-2024 18:26:50	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	13-Nov-2024 18:26:51	--
build	13-Nov-2024 18:26:51	Creating core for _jalview...
build	13-Nov-2024 18:26:51	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js
build	13-Nov-2024 18:26:51	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js
build	13-Nov-2024 18:26:51	
build	13-Nov-2024 18:26:51	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js'
build	13-Nov-2024 18:26:51	
build	13-Nov-2024 18:26:51	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js
build	13-Nov-2024 18:26:51	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	13-Nov-2024 18:26:53	--
build	13-Nov-2024 18:26:53	Creating core for _stevesoft...
build	13-Nov-2024 18:26:53	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js
build	13-Nov-2024 18:26:53	Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js
build	13-Nov-2024 18:26:53	
build	13-Nov-2024 18:26:53	Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js'
build	13-Nov-2024 18:26:53	
build	13-Nov-2024 18:26:53	Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js
build	13-Nov-2024 18:26:53	Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''
build	13-Nov-2024 18:26:55	--
build	13-Nov-2024 18:26:55	:jalviewjsBuildAllCores (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 16.815 secs.
build	13-Nov-2024 18:26:55	:jalviewjsPublishCoreTemplates (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:55	
build	13-Nov-2024 18:26:55	> Task :jalviewjsPublishCoreTemplates
build	13-Nov-2024 18:26:55	Caching disabled for task ':jalviewjsPublishCoreTemplates' because:
build	13-Nov-2024 18:26:55	  Build cache is disabled
build	13-Nov-2024 18:26:55	Task ':jalviewjsPublishCoreTemplates' is not up-to-date because:
build	13-Nov-2024 18:26:55	  Output property '$1$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jalview.html has been removed.
build	13-Nov-2024 18:26:55	  Output property '$1$2' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jvexamplefile.html has been removed.
build	13-Nov-2024 18:26:55	  Output property '$1$3' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/tmp/site_core/JalviewJS__jalview.html has been removed.
build	13-Nov-2024 18:26:55	:jalviewjsPublishCoreTemplates (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.013 secs.
build	13-Nov-2024 18:26:55	:jalviewjsSyncCore (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:56	
build	13-Nov-2024 18:26:56	> Task :jalviewjsSyncCore
build	13-Nov-2024 18:26:56	Caching disabled for task ':jalviewjsSyncCore' because:
build	13-Nov-2024 18:26:56	  Build cache is disabled
build	13-Nov-2024 18:26:56	Task ':jalviewjsSyncCore' is not up-to-date because:
build	13-Nov-2024 18:26:56	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/JalviewJS__jalview.html has been removed.
build	13-Nov-2024 18:26:56	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/JalviewJS__stevesoft.html has been removed.
build	13-Nov-2024 18:26:56	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/JalviewJS_jalview.html has been removed.
build	13-Nov-2024 18:26:56	:jalviewjsSyncCore (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.18 secs.
build	13-Nov-2024 18:26:56	:copyChannelResources (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:56	
build	13-Nov-2024 18:26:56	> Task :copyChannelResources
build	13-Nov-2024 18:26:56	Execution optimizations have been disabled for task ':copyChannelResources' to ensure correctness due to the following reasons:
build	13-Nov-2024 18:26:56	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	13-Nov-2024 18:26:56	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/resources/resources_build'. Reason: Task ':jalviewjsSyncBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	13-Nov-2024 18:26:56	Invalidating VFS because task ':copyChannelResources' failed validation
build	13-Nov-2024 18:26:56	Caching disabled for task ':copyChannelResources' because:
build	13-Nov-2024 18:26:56	  Build cache is disabled
build	13-Nov-2024 18:26:56	Task ':copyChannelResources' is not up-to-date because:
build	13-Nov-2024 18:26:56	  Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build	13-Nov-2024 18:26:56	:copyChannelResources (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.129 secs.
build	13-Nov-2024 18:26:56	:buildResources (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:56	
build	13-Nov-2024 18:26:56	> Task :buildResources
build	13-Nov-2024 18:26:56	Skipping task ':buildResources' as it has no actions.
build	13-Nov-2024 18:26:56	:buildResources (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:26:56	:jalviewjsSyncResources (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:56	
build	13-Nov-2024 18:26:56	> Task :jalviewjsSyncResources
build	13-Nov-2024 18:26:56	Caching disabled for task ':jalviewjsSyncResources' because:
build	13-Nov-2024 18:26:56	  Build cache is disabled
build	13-Nov-2024 18:26:56	Task ':jalviewjsSyncResources' is not up-to-date because:
build	13-Nov-2024 18:26:56	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has changed.
build	13-Nov-2024 18:26:56	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/j2s/AmbiguityCodes.dat has been removed.
build	13-Nov-2024 18:26:56	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/j2s/authors.props has been removed.
build	13-Nov-2024 18:26:56	:jalviewjsSyncResources (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.167 secs.
build	13-Nov-2024 18:26:56	:jalviewjsSyncSiteResources (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:57	
build	13-Nov-2024 18:26:57	> Task :jalviewjsSyncSiteResources
build	13-Nov-2024 18:26:57	Caching disabled for task ':jalviewjsSyncSiteResources' because:
build	13-Nov-2024 18:26:57	  Build cache is disabled
build	13-Nov-2024 18:26:57	Task ':jalviewjsSyncSiteResources' is not up-to-date because:
build	13-Nov-2024 18:26:57	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_JalviewJS2.html has changed.
build	13-Nov-2024 18:26:57	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/applets-nocore.html has been removed.
build	13-Nov-2024 18:26:57	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/applets.html has been removed.
build	13-Nov-2024 18:26:57	:jalviewjsSyncSiteResources (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.738 secs.
build	13-Nov-2024 18:26:57	:jalviewjsPrepareSite (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:57	
build	13-Nov-2024 18:26:57	> Task :jalviewjsPrepareSite
build	13-Nov-2024 18:26:57	Skipping task ':jalviewjsPrepareSite' as it has no actions.
build	13-Nov-2024 18:26:57	:jalviewjsPrepareSite (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:26:57	:jalviewjsBuildSite (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:57	
build	13-Nov-2024 18:26:57	> Task :jalviewjsBuildSite
build	13-Nov-2024 18:26:57	Skipping task ':jalviewjsBuildSite' as it has no actions.
build	13-Nov-2024 18:26:57	:jalviewjsBuildSite (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:26:57	:cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:57	
build	13-Nov-2024 18:26:57	> Task :cleanJalviewjsChromiumUserDir UP-TO-DATE
build	13-Nov-2024 18:26:57	Caching disabled for task ':cleanJalviewjsChromiumUserDir' because:
build	13-Nov-2024 18:26:57	  Build cache is disabled
build	13-Nov-2024 18:26:57	Skipping task ':cleanJalviewjsChromiumUserDir' as it is up-to-date.
build	13-Nov-2024 18:26:57	:cleanJalviewjsChromiumUserDir (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:26:57	:jalviewjsChromiumProfile (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:57	
build	13-Nov-2024 18:26:57	> Task :jalviewjsChromiumProfile
build	13-Nov-2024 18:26:57	Caching disabled for task ':jalviewjsChromiumProfile' because:
build	13-Nov-2024 18:26:57	  Build cache is disabled
build	13-Nov-2024 18:26:57	Task ':jalviewjsChromiumProfile' is not up-to-date because:
build	13-Nov-2024 18:26:57	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/chromium/First Run has been removed.
build	13-Nov-2024 18:26:57	:jalviewjsChromiumProfile (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.001 secs.
build	13-Nov-2024 18:26:57	:jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:57	
build	13-Nov-2024 18:26:57	> Task :jalviewjsCopyStderrLaunchFile
build	13-Nov-2024 18:26:57	Caching disabled for task ':jalviewjsCopyStderrLaunchFile' because:
build	13-Nov-2024 18:26:57	  Build cache is disabled
build	13-Nov-2024 18:26:57	Task ':jalviewjsCopyStderrLaunchFile' is not up-to-date because:
build	13-Nov-2024 18:26:57	  Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed.
build	13-Nov-2024 18:26:57	  Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html has been removed.
build	13-Nov-2024 18:26:57	:jalviewjsCopyStderrLaunchFile (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.087 secs.
build	13-Nov-2024 18:26:57	:jalviewjsLaunchTest (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:26:57	COMMAND: '/home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html'
build	13-Nov-2024 18:26:57	Starting process 'command '/home/bamboo/buildtools/chromium/chrome''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1 Command: /home/bamboo/buildtools/chromium/chrome --no-sandbox --headless=new --disable-gpu --timeout=40000 --virtual-time-budget=40000 --user-data-dir=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/chromium --profile-directory=BUILD --allow-file-access-from-files --enable-logging=stderr file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html
build	13-Nov-2024 18:26:57	Successfully started process 'command '/home/bamboo/buildtools/chromium/chrome''
build	13-Nov-2024 18:26:59	
build	13-Nov-2024 18:26:59	> Task :jalviewjsLaunchTest
build	13-Nov-2024 18:26:59	Caching disabled for task ':jalviewjsLaunchTest' because:
build	13-Nov-2024 18:26:59	  Build cache is disabled
build	13-Nov-2024 18:26:59	Task ':jalviewjsLaunchTest' is not up-to-date because:
build	13-Nov-2024 18:26:59	  Task has not declared any outputs despite executing actions.
build	13-Nov-2024 18:26:59	
error	13-Nov-2024 18:26:59	[27464:27464:1113/182659.310542:WARNING:chrome_main_delegate.cc(593)] This is Thorium version: 114.0.5735.134 (not a warning)
error	13-Nov-2024 18:26:59	[27464:27464:1113/182659.799602:WARNING:chrome_browser_cloud_management_controller.cc(87)] Could not create policy manager as CBCM is not enabled.
error	13-Nov-2024 18:27:00	[27464:27481:1113/182700.890510:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	13-Nov-2024 18:27:00	[27464:27481:1113/182700.895887:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	13-Nov-2024 18:27:00	[27464:27481:1113/182700.895910:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	13-Nov-2024 18:27:00	[27464:27481:1113/182700.895923:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	13-Nov-2024 18:27:01	[27464:27464:1113/182701.306194:ERROR:chrome_browser_cloud_management_controller.cc(162)] Cloud management controller initialization aborted as CBCM is not enabled.
error	13-Nov-2024 18:27:01	[27464:27481:1113/182701.527475:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	13-Nov-2024 18:27:01	[27464:27481:1113/182701.527504:ERROR:bus.cc(399)] Failed to connect to the bus: Could not parse server address: Unknown address type (examples of valid types are "tcp" and on UNIX "unix")
error	13-Nov-2024 18:27:01	[27494:27494:1113/182701.878839:ERROR:vaapi_wrapper.cc(3273)] Failed to initialize VAAPI libs
error	13-Nov-2024 18:27:01	[27494:27494:1113/182701.918143:WARNING:sandbox_linux.cc(393)] InitializeSandbox() called with multiple threads in process gpu-process.
error	13-Nov-2024 18:27:02	[27464:27478:1113/182701.981236:WARNING:external_pref_loader.cc(294)] You are using an old-style extension deployment method (external_extensions.json), which will soon be deprecated. (see http://developer.chrome.com/extensions/external_extensions.html)
error	13-Nov-2024 18:27:02	[27497:27523:1113/182702.053617:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration
error	13-Nov-2024 18:27:02	[27497:27523:1113/182702.054942:WARNING:dns_client.cc(268)] BuildEffectiveConfig(): invalid configuration
error	13-Nov-2024 18:27:02	[27464:27464:1113/182702.738522:WARNING:bluez_dbus_manager.cc(247)] Floss manager not present, cannot set Floss enable/disable.
error	13-Nov-2024 18:27:02	[27464:27464:1113/182702.738646:ERROR:object_proxy.cc(590)] Failed to call method: org.freedesktop.portal.Settings.Read: object_path= /org/freedesktop/portal/desktop: unknown error type: 
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.346227:INFO:CONSOLE(13141)] "J2SApplet load testApplet loadClazz...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.346253:INFO:CONSOLE(13141)] "J2SApplet load testApplet start applet...", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13141)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.404486:INFO:CONSOLE(13084)] "j2sApplet exec testApplet loadClazz null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.422034:INFO:CONSOLE(16968)] "j2sApplet exec testApplet start applet null
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.422057:INFO:CONSOLE(13084)] "j2sApplet exec testApplet start applet null -- OK", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (13084)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.424033:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Class.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.433746:INFO:CONSOLE(26)] "transpiler was unknown now 3.3.1-v1 for java.lang.Class
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.434254:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Jalview.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.437355:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/groovy/JalviewObjectI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.439793:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/Platform.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.443352:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Console.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.445471:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.jalview.org
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.445490:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.jalview.org
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.445505:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain http://www.compbio.dundee.ac.uk
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.445727:INFO:CONSOLE(16968)] "Platform adding known access-control-allow-origin * for domain https://www.compbio.dundee.ac.uk
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.445744:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Hashtable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.451284:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Dictionary.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.454010:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Map.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.457089:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.460738:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.466592:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.470315:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFrameViewer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.472415:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSApp.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.474553:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSInterface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.476660:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletStub.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.479092:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/AppletContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.484165:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URL.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.486290:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/Interface.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.493508:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.493539:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.495982:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandlerFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.498509:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.503100:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractCollection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.510015:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Collection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.512287:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Iterable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.514841:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Set.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.518027:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Enumeration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.519971:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Iterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.522910:INFO:CONSOLE(16968)] "JSApp get parameter: language = null
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.523816:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSUtil.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.528456:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/JSUtilI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.531875:INFO:CONSOLE(16968)] "swingjs.JSUtil initialized;debug=false
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.531896:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Locale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.535915:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/BaseLocale.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.540521:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/StringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.542263:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AbstractStringBuilder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.545640:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LocaleUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.549749:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Enum.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.552135:INFO:CONSOLE(16968)] "JSApp get parameter: name = testApplet
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.552162:INFO:CONSOLE(16968)] "JSApp get parameter: syncId = 888278777757391
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.552178:INFO:CONSOLE(16968)] "JSApp initialized
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.552189:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Dimension.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.567183:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Dimension2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.569832:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Lst.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.572392:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ArrayList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.578030:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.581370:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/List.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.591049:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/RandomAccess.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.595849:INFO:CONSOLE(16968)] "JSAppletViewer initializing2
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.595887:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Insets.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.604746:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.611487:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ThreadGroup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.617582:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/Thread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.626734:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/JSThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.629246:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSAppletThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.634101:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.637039:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Toolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.641217:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/ComponentFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.644521:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.649658:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Queue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.652742:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.657289:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PostEventQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.660515:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSToolkit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.672053:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.676327:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/ChangeListenerMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.680301:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.684368:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.688756:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentThreadAppContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.692390:INFO:CONSOLE(16968)] "JSToolkit initialized
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.692412:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.696110:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsConfiguration.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.698645:INFO:CONSOLE(16968)] "JSGraphicsConfiguration initialized
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.698664:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.702771:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.702799:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSGraphicsEnvironment.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.706142:INFO:CONSOLE(16968)] "JSGraphicsEnvironment initialized
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.706163:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSScreenDevice
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.706175:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSScreenDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.709627:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsDevice.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.712500:INFO:CONSOLE(16968)] "JSScreenDevice initialized
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.717839:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=0 status=0
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.717876:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingUtilities.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.720703:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingConstants.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.722650:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/MostRecentKeyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.724980:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InvocationEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.729108:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.730831:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/EventObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.733115:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ActiveEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.735076:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/AWTAutoShutdown.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.738366:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/HashSet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.741442:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/IdentityHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.745016:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventDispatchThread.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.751245:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.753818:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/EventFilter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.756176:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Arrays.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.760307:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.765130:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=1
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.765152:INFO:CONSOLE(16968)] "JSAppletViewer runloader
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.765599:INFO:CONSOLE(16968)] "JSApp get parameter: main = jalview.bin.Jalview
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.765617:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSDummyApplet
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.765764:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSDummyApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.769001:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.770703:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/applet/JSApplet.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.772816:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.774348:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Container.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.776949:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/JSComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.779082:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Component.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.782870:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageObserver.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.786300:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RootPaneContainer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.788087:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FlowLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.791495:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.793309:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ComponentOrientation.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.797997:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JRootPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.800153:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JComponent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.806168:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/RequestFocusController.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.808125:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/EventListenerList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.810352:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPanel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.812665:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.814786:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel
error	13-Nov-2024 18:27:03	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.815006:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/HTML5LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.817161:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LookAndFeel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.819020:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/FontUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.820548:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Font.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.822891:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/UIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.826053:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/UIDefaults.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.828846:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Color.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.831350:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Paint.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.833069:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Transparency.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.835476:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ColorUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.839024:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/SwingLazyValue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.841576:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/InsetsUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.843358:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/BorderUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.845408:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/Border.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.847037:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/EtchedBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.849305:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/AbstractBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.851268:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/DimensionUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.853012:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/EmptyBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.857869:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/RepaintManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.860625:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingPaintEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.865546:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/PaintEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.867572:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPanelUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.869381:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLightweightUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.875175:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSComponentUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.879819:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.882659:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/ComponentPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.884601:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSEventHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.886291:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.888751:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/peer/DropTargetPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.891363:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/LightweightPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.893430:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/ContainerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.897033:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/beans/PropertyChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.899122:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.901726:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.904912:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/KeyEventPostProcessor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.906963:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/AWTKeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.909298:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/LinkedList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.911954:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractSequentialList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.913672:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Deque.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.917026:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultKeyboardFocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.919961:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/DefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.922329:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.924548:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.939039:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFocusPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.940063:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/peer/KeyboardFocusManagerPeer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.943461:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/DOMNode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:03	[27464:27464:1113/182703.945464:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Cursor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.950171:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JLayeredPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.952540:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSLayeredPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.955076:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/BorderLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.956937:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LayoutManager2.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.959640:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ArrayTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.962778:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/FocusManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.965073:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LayoutFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.966987:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SortingFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.975022:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InternalFrameFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.976995:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingContainerOrderFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.979119:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SwingDefaultFocusTraversalPolicy.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.983371:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/LayoutComparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.986484:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Comparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.989813:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRootPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182703.994743:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSAppletUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.001046:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/LightweightDispatcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.003369:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AWTEventListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.004956:INFO:CONSOLE(16968)] "testApplet loaded
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.005017:INFO:CONSOLE(298)] "testApplet loaded", source: swingjs/j2s/swingjs/JSUtil.js (298)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.032151:INFO:CONSOLE(16968)] "JSAppletViewer thread run1 mode=1 status=76
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.032173:INFO:CONSOLE(16968)] "testApplet running jalview.bin.Jalview
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.032187:INFO:CONSOLE(298)] "testApplet running jalview.bin.Jalview", source: swingjs/j2s/swingjs/JSUtil.js (298)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.032197:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/PT.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.035093:INFO:CONSOLE(16968)] "Running main(args) in class jalview.bin.Jalview
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.040567:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/BootstrapArgs.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.043002:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Objects.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.045270:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/argparser/Arg.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.048680:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ChannelProperties.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.050915:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Properties.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.053659:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/File.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.055797:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/FileSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.058218:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLStreamHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.059972:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLStreamHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.063222:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/channel.props", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.156077:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/BufferedInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.158292:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/FilterInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.160085:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/InputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.161879:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/Closeable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.163600:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/AutoCloseable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.165365:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/ByteArrayInputStream.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.167573:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/HttpUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.169421:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AjaxURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.171621:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/HttpURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.173576:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/URLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.175816:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/net/ContentHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.178364:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Rdr.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.180728:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/api/GenericLineReader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.182521:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/AU.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.188249:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-16.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.192201:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ImageIcon.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.194813:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Icon.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.196573:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/SB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.199667:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of swingjs.JSImagekit
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.199692:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSImagekit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.201083:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ImageConsumer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.210556:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.216961:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/BufferedImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.220295:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Image.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.223903:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/RenderedImage.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.227147:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/ColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.230353:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DirectColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.232486:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/PackedColorModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.235156:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/color/ColorSpace.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.237920:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/Raster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.240124:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DataBufferInt.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.242953:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/DataBuffer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.244868:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/DataStealer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.248908:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/SunWritableRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.250740:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/WritableRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.253597:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/java2d/StateTrackable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.255524:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/java2d/StateTrackableDelegate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.259723:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Point2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.262445:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/SinglePixelPackedSampleModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.264702:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/image/SampleModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.267143:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/IntegerInterleavedRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.269365:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/image/IntegerComponentRaster.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.273300:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Rectangle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.275496:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/Rectangle2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.277388:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/geom/RectangularShape.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.279420:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Shape.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.281838:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javajs/util/Base64.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.291613:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-32.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.296683:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-48.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.303045:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-64.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.317137:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-128.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.326197:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-256.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.330452:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/images/jalview_logo-512.png", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.345650:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Cache.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.348401:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/datamodel/PDBEntry.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.352048:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureImportSettings.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.354004:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.355945:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/Format.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.358167:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.360398:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleServiceProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.362579:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.365115:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/JRELocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.367840:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/ResourceBundleBasedAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.370489:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentHashMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.373340:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ConcurrentMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.381772:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/SPILocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.384234:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AuxLocaleProviderAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.388135:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleDataMetaInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.397333:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/DateFormatProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.399156:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/AvailableLanguageTags.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.401618:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/LanguageTag.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.404989:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/SimpleDateFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.409997:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/CharacterIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.455967:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfo.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.458374:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/ZoneInfoFile.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.461375:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/calendar/tzdb.dat", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.472254:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/io/DataInput.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.487795:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Calendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.491378:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/spi/CalendarProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.495146:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.497349:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/GregorianCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.500447:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarSystem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.502379:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of sun.util.calendar.Gregorian
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.502510:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/Gregorian.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.504409:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/BaseCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.506802:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/AbstractCalendar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.510018:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataUtility.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.512692:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CalendarDataProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.514255:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleServiceProviderPool.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.516444:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/BreakIteratorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.518201:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/CollatorProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.520002:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DateFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.521682:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/DecimalFormatSymbolsProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.523350:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/spi/NumberFormatProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.525769:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/CurrencyNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.527886:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/LocaleNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.529724:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/spi/TimeZoneNameProvider.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.531789:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/CalendarDataProviderImpl.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.534391:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/security/PrivilegedExceptionAction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.536032:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ServiceLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.540026:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/locale/provider/LocaleResources.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.542007:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/ref/ReferenceQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.544296:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/LocaleData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.546315:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.550564:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.550584:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/CalendarData.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.553899:INFO:CONSOLE(16968)] "JSUtil caching 1780 bytes for swingjs/j2s/sun/util/resources/CalendarData.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.553923:INFO:CONSOLE(16968)] "swingjs.api.Interface creating instance of java.util.PropertyResourceBundle
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.553940:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/PropertyResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.557560:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.557582:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.563913:INFO:CONSOLE(16968)] "JSUtil caching 1943 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.563939:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.563957:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.566955:INFO:CONSOLE(16968)] "JSUtil caching 1786 bytes for swingjs/j2s/sun/util/resources/en/CalendarData_en_GB.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.567027:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/CalendarData.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.567096:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.567902:INFO:CONSOLE(16968)] "JSUtil getting Java resource sun/util/resources/en/CalendarData_en_GB.properties
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.568147:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarDate.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.571792:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/calendar/CalendarUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.574842:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DateFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.577708:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/FormatData.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.581310:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/util/resources/ParallelListResourceBundle.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.584065:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.586375:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/text/resources/en/FormatData_en_GB.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.590337:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/NumberFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.593235:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormatSymbols.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.598623:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DecimalFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.600931:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/FieldPosition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.605259:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/text/DigitList.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.607280:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/math/RoundingMode.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.613889:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/LaunchUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.616143:INFO:CONSOLE(16968)] "Jalview non-release Version: TEST
error	13-Nov-2024 18:27:04	Jalview non-release Installation: unknown
error	13-Nov-2024 18:27:04	Channel: default
error	13-Nov-2024 18:27:04	Build Date: unknown
error	13-Nov-2024 18:27:04	Preferences file: unknown
error	13-Nov-2024 18:27:04	Log file: unknown
error	13-Nov-2024 18:27:04	Java version: 1.8
error	13-Nov-2024 18:27:04	Java home: https://.
error	13-Nov-2024 18:27:04	Java launch class: unknown
error	13-Nov-2024 18:27:04	Java platform: Mozilla/5.0  5.0 (X11) (Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/114.0.0.0 Safari/537.36)
error	13-Nov-2024 18:27:04	Java LAF: SwingJS (swingjs.plaf.HTML5LookAndFeel)
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.617902:INFO:CONSOLE(26)] "Using default properties file '/TEMP/swingjs/.jalview_nonrelease_properties'
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.617931:INFO:CONSOLE(26)] "Falling back to properties file '/TEMP/swingjs/.jalview_properties'
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.617943:INFO:CONSOLE(26)] "Could not load bootstrap preferences file '/TEMP/swingjs/.jalview_properties'
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.617955:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.619960:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/.build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.621983:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/BuildDetails.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.623620:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/api/BuildDetailsI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.625312:INFO:CONSOLE(16968)] "Jalview non-release version: TEST (Source git-commit:544bd63f8e [develop])
error	13-Nov-2024 18:27:04	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.625452:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/ArgsParser.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.631874:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/log/JLogger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.661506:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/AlignmentFileWriterI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.671075:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ArgParserUtils.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.673703:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormats.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.675640:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormat.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.678034:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileFormatI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.686922:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/UserAgent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
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error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.800694:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ItemListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.802368:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/AdjustmentListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.804048:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/TextListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.806669:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputMethodListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.808579:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.810496:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/HierarchyBoundsListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.812469:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseWheelListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.817312:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuBar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.819426:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/MenuElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.821616:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultSingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.823093:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SingleSelectionModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.824921:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuBarUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.827375:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/DefaultMenuLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.829062:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BoxLayout.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.831573:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/swing/DefaultLookup.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.833489:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/LazyActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.835318:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ActionMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.837533:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ActionMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.840264:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.842524:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.844604:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/AbstractButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.848000:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/ItemSelectable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.851050:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.852777:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ButtonModel.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.855759:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.857669:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.860182:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.862263:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.864894:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/basic/BasicBorders.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.868095:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/Constructor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.870183:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AccessibleObject.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.872052:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/lang/reflect/AnnotatedElement.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.874505:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/ButtonListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.877111:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/AncestorListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.879224:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/plaf/ComponentInputMapUIResource.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.881041:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ComponentInputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.883654:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/InputMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.896699:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/BorderFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.898587:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/BevelBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.933057:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JCheckBoxMenuItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.938175:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JToggleButton.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.940454:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxMenuItemUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.942074:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSCheckBoxUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:04	[27464:27464:1113/182704.944111:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSRadioButtonUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.961046:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/APQHandlers.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.962704:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/MessageManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.964710:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/Formatter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.970991:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Pattern.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.972783:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/Matcher.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.974986:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/regex/MatchResult.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.978381:INFO:CONSOLE(16968)] "INFO: Getting messages for lang: en_GB
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.978836:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages.properties
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.979213:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182704.986296:INFO:CONSOLE(16968)] "JSUtil caching 90933 bytes for swingjs/j2s/lang/Messages.properties
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.016122:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en.properties
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.016146:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.024296:INFO:CONSOLE(16968)] "JSUtil getting Java resource lang/Messages_en_GB.properties
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.024455:INFO:CONSOLE(10504)] "xhr.open binary async=false url=swingjs/j2s/lang/Messages_en_GB.properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.031742:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/JSFontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.035367:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/FontMetrics.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.037489:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/font/FontRenderContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.066087:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.069627:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapper8.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.072523:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/util/ShortcutKeyMaskExWrapperI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.075838:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyStroke.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.080185:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/KeyEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.082288:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/InputEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.085319:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ComponentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.113580:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/ToolTipManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.115874:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.118816:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/Timer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.121533:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/MouseMotionAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.131834:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/ContainerEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.135959:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JPopupMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.139177:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.141782:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/JQueryUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.147964:INFO:CONSOLE(16968)] "JSUtil getting Java resource swingjs/jquery/j2sMenu.js
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.148423:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/jquery/j2sMenu.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.150772:INFO:CONSOLE(16968)] "Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [24845]
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.152277:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/MenuKeyListener.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.154991:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowAdapter.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.159038:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/border/CompoundBorder.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.164127:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JSeparator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.166756:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSPopupMenuSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.168575:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSSeparatorUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.205111:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/KeyboardManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.235281:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/SizeRequirements.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.248040:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/event/ChangeEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.283221:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/gui/JalviewChangeSupport.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.285592:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executors.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.289548:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/TimeUnit.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.293497:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/LinkedBlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.296846:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/AbstractQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.298966:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/BlockingQueue.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.303954:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/atomic/AtomicInteger.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.307549:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/ReentrantLock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.310193:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Lock.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.313123:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractQueuedSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.317581:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/AbstractOwnableSynchronizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.320430:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/locks/Condition.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.322948:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadPoolExecutor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.325760:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/AbstractExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.327937:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ExecutorService.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.329174:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Executor.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.331706:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/RejectedExecutionHandler.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.334449:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/ThreadFactory.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.336450:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/concurrent/Semaphore.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.339095:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/structure/StructureSelectionManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.343116:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/JDesktopPane.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.348908:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/JSDesktopPaneUI.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.352471:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DefaultDesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.354530:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/swing/DesktopManager.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.361654:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTarget.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.365071:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/dnd/DropTargetContext.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.367485:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/SystemFlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.369385:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorMap.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.371162:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/datatransfer/FlavorTable.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.374389:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.374724:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/JalviewTaskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.376645:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/Taskbar.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.379204:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/plaf/Resizer.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.381575:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/JSFunction.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.398356:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/WindowEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.400367:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/bin/Commands.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.406318:INFO:CONSOLE(16968)] "WARN: Error when running commands
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (16968)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.406338:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/jalview/io/FileLoader.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.442465:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/javax/net/ssl/HttpsURLConnection.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.446189:INFO:CONSOLE(10504)] "xhr.open binary async=false url=https://www.jalview.org/jalview-js//swingjs/j2s/build_properties", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (10504)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.466831:INFO:CONSOLE(26)] "Non-fatal exception when checking version at https://www.jalview.org/jalview-js//swingjs/j2s/build_properties:
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.467889:INFO:CONSOLE(26)] "java.io.FileNotFoundException: opening https://www.jalview.org/jalview-js//swingjs/j2s/build_properties
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.467914:INFO:CONSOLE(26)] "anonymous.anonymous(Unknown Source)
error	13-Nov-2024 18:27:05	", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/jalview_bin_Jalview-stderr.html (26)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.490095:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/swingjs/api/js/HTML5CanvasContext2D.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.495115:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/GraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.505898:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/SunGraphicsCallback.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.534174:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/CausedFocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.536977:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/event/FocusEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.540274:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/TimSort.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.545191:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/util/ListIterator.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.600235:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/java/awt/SentEvent.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.604159:INFO:CONSOLE(9663)] "xhr.open async=false url=swingjs/j2s/sun/awt/EventQueueItem.js", source: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site/swingjs/swingjs2.js (9663)
build	13-Nov-2024 18:27:05	
build	13-Nov-2024 18:27:05	> Task :jalviewjsLaunchTest
build	13-Nov-2024 18:27:05	Found line '[27464:27464:1113/182705.374389:INFO:CONSOLE(16968)] "INFO: JALVIEWJS: CREATED DESKTOP'
build	13-Nov-2024 18:27:05	:jalviewjsLaunchTest (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 8.574 secs.
build	13-Nov-2024 18:27:05	:jalviewjs (Thread[Execution worker for ':' Thread 2,5,main]) started.
error	13-Nov-2024 18:27:05	[27464:27464:1113/182705.702087:WARNING:pref_notifier_impl.cc(41)] Pref observer for media_router.cast_allow_all_ips found at shutdown.
build	13-Nov-2024 18:27:05	
build	13-Nov-2024 18:27:05	> Task :jalviewjs
build	13-Nov-2024 18:27:05	Skipping task ':jalviewjs' as it has no actions.
build	13-Nov-2024 18:27:05	:jalviewjs (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:27:05	:jalviewjsSiteTar (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:27:07	
build	13-Nov-2024 18:27:07	> Task :jalviewjsSiteTar
build	13-Nov-2024 18:27:07	Execution optimizations have been disabled for task ':jalviewjsSiteTar' to ensure correctness due to the following reasons:
build	13-Nov-2024 18:27:07	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB-JOB1/build/jalviewjs/site'. Reason: Task ':jalviewjsSiteTar' uses this output of task ':jalviewjsCopyStderrLaunchFile' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	13-Nov-2024 18:27:07	Invalidating VFS because task ':jalviewjsSiteTar' failed validation
build	13-Nov-2024 18:27:07	Caching disabled for task ':jalviewjsSiteTar' because:
build	13-Nov-2024 18:27:07	  Build cache is disabled
build	13-Nov-2024 18:27:07	Task ':jalviewjsSiteTar' is not up-to-date because:
build	13-Nov-2024 18:27:07	  Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details.
build	13-Nov-2024 18:27:08	:jalviewjsSiteTar (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 2.723 secs.
build	13-Nov-2024 18:27:08	producer locations for task group 1 (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:27:08	producer locations for task group 1 (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:27:08	producer locations for task group 2 (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:27:08	producer locations for task group 2 (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:27:08	producer locations for task group 3 (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:27:08	producer locations for task group 3 (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:27:08	producer locations for task group 4 (Thread[Execution worker for ':' Thread 2,5,main]) started.
build	13-Nov-2024 18:27:08	producer locations for task group 4 (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
build	13-Nov-2024 18:27:08	
build	13-Nov-2024 18:27:08	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	13-Nov-2024 18:27:08	
build	13-Nov-2024 18:27:08	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	13-Nov-2024 18:27:08	
build	13-Nov-2024 18:27:08	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	13-Nov-2024 18:27:08	
build	13-Nov-2024 18:27:08	Execution optimizations have been disabled for 3 invalid unit(s) of work during this build to ensure correctness.
build	13-Nov-2024 18:27:08	Please consult deprecation warnings for more details.
build	13-Nov-2024 18:27:08	
build	13-Nov-2024 18:27:08	BUILD SUCCESSFUL in 2m 1s
build	13-Nov-2024 18:27:08	29 actionable tasks: 26 executed, 3 up-to-date
simple	13-Nov-2024 18:27:08	Finished task 'JalviewJS build site and distributable tar' with result: Success
simple	13-Nov-2024 18:27:08	Running post build plugin 'NCover Results Collector'
simple	13-Nov-2024 18:27:08	Running post build plugin 'Artifact Copier'
simple	13-Nov-2024 18:27:08	Publishing an artifact: JalviewJS site tar file
simple	13-Nov-2024 18:27:08	Finished publishing of artifact Shared artifact: [JalviewJS site tar file], pattern: [jalviewjs-site-*.tar.gz] anchored at: [build/distributions/] in 22.26 ms
simple	13-Nov-2024 18:27:08	Publishing an artifact: JalviewJS site
simple	13-Nov-2024 18:27:09	Finished publishing of artifact Shared artifact: [JalviewJS site], pattern: [**/*] anchored at: [build/jalviewjs/site] in 1.056 s
simple	13-Nov-2024 18:27:09	Running post build plugin 'Artifactory Release Management Staging'
simple	13-Nov-2024 18:27:09	Running post build plugin 'Artifactory Build Info Copier'
simple	13-Nov-2024 18:27:09	Running post build plugin 'Artifactory Gradle Properties Info Copier'
simple	13-Nov-2024 18:27:09	Running post build plugin 'npm Cache Cleanup'
simple	13-Nov-2024 18:27:09	Running post build plugin 'Clover Results Collector'
simple	13-Nov-2024 18:27:09	Running post build plugin 'Docker Container Cleanup'
simple	13-Nov-2024 18:27:09	Finalising the build...
simple	13-Nov-2024 18:27:09	Stopping timer.
simple	13-Nov-2024 18:27:09	Build JB-GJB-JOB1-471 completed.
simple	13-Nov-2024 18:27:09	Running on server: post build plugin 'NCover Results Collector'
simple	13-Nov-2024 18:27:09	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	13-Nov-2024 18:27:09	Running on server: post build plugin 'Clover Delta Calculator'
simple	13-Nov-2024 18:27:09	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	13-Nov-2024 18:27:09	All post build plugins have finished
simple	13-Nov-2024 18:27:09	Generating build results summary...
simple	13-Nov-2024 18:27:09	Saving build results to disk...
simple	13-Nov-2024 18:27:09	Logging substituted variables...
simple	13-Nov-2024 18:27:09	Indexing build results...
simple	13-Nov-2024 18:27:09	Finished building JB-GJB-JOB1-471.