simple 13-Mar-2023 16:13:16 Build Jalview Builds - Gradle getdown release - Default Job #8 (JB-GGR-JOB1-8) started building on agent Default Agent simple 13-Mar-2023 16:13:16 simple 13-Mar-2023 16:13:16 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1 simple 13-Mar-2023 16:13:16 Executing build Jalview Builds - Gradle getdown release - Default Job #8 (JB-GGR-JOB1-8) simple 13-Mar-2023 16:13:16 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 13-Mar-2023 16:13:16 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1 simple 13-Mar-2023 16:13:16 Updating source code to revision: 82ccd1295e4b80f2b22950f2db2ee8dffe6f5969 simple 13-Mar-2023 16:13:16 Fetching 'refs/heads/develop' from 'http://source.jalview.org/git/jalview.git'. simple 13-Mar-2023 16:13:16 Checking out revision 82ccd1295e4b80f2b22950f2db2ee8dffe6f5969. simple 13-Mar-2023 16:13:16 Already on 'develop' simple 13-Mar-2023 16:13:16 Updated source code to revision: 82ccd1295e4b80f2b22950f2db2ee8dffe6f5969 simple 13-Mar-2023 16:13:16 Finished task 'Checkout Default Repository' with result: Success simple 13-Mar-2023 16:13:16 Running pre-build action: VCS Version Collector simple 13-Mar-2023 16:13:16 Running pre-build action: Artifactory Release Staging simple 13-Mar-2023 16:13:16 Starting task 'Jalview distribution for Java 11' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 13-Mar-2023 16:13:16 Bamboo Artifactory Plugin version: 2.6.2 command 13-Mar-2023 16:13:16 Beginning to execute external process for build 'Jalview Builds - Gradle getdown release - Default Job #8 (JB-GGR-JOB1-8)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PJAVA_VERSION=11 -PCHANNEL=RELEASE -PJALVIEW_VERSION=2.11 clean makeDist shadowJar getdown\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=develop\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=develop\nbamboo_repository_revision_number=82ccd1295e4b80f2b22950f2db2ee8dffe6f5969\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GGR-JOB1-8\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GGR-JOB1\nbamboo_shortPlanName=Gradle getdown release\nbamboo_planRepository_name=Jalview Git\nLOGNAME=bamboo\nbamboo_buildNumber=8\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GGR-JOB1-8\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle getdown release\nbamboo_shortPlanKey=GGR\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=82ccd1295e4b80f2b22950f2db2ee8dffe6f5969\nbamboo_buildTimeStamp=2023-03-13T16:13:16.023Z\nbamboo_repository_previous_revision_number=82ccd1295e4b80f2b22950f2db2ee8dffe6f5969\nbamboo_planRepository_previousRevision=82ccd1295e4b80f2b22950f2db2ee8dffe6f5969\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=JB-GGR-JOB1-8\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Jalview Builds - Gradle getdown release - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=82ccd1295e4b80f2b22950f2db2ee8dffe6f5969\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Git\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nbamboo_dependenciesDisabled=false\nbamboo_repository_9175044_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_repository_9175044_branch_name=develop\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=82ccd1295e4b80f2b22950f2db2ee8dffe6f5969\nbamboo_planRepository_branchDisplayName=develop\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=develop\nbamboo_repository_9175044_revision_number=82ccd1295e4b80f2b22950f2db2ee8dffe6f5969\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_repository_9175044_previous_revision_number=82ccd1295e4b80f2b22950f2db2ee8dffe6f5969\nbamboo_plan_storageTag=plan-8978439\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_9175044_git_username=\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_ManualBuildTriggerReason_userName=Soares\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_repository_9175044_git_branch=develop\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1\nbamboo_planKey=JB-GGR\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=develop\nbamboo_repository_9175044_name=Jalview Git\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 13-Mar-2023 16:13:18 build 13-Mar-2023 16:13:18 > Configure project : build 13-Mar-2023 16:13:18 Using properties from file './utils/channels/release/channel_gradle.properties' build 13-Mar-2023 16:13:18 JALVIEW_VERSION is set to '2.11' build 13-Mar-2023 16:13:18 HEADLESS BUILD build 13-Mar-2023 16:13:18 J2S ENABLED build 13-Mar-2023 16:13:18 Using a RELEASE profile. build 13-Mar-2023 16:13:18 eclipseDir exists build 13-Mar-2023 16:13:18 build 13-Mar-2023 16:13:18 > Task :clean build 13-Mar-2023 16:13:18 > Task :cleanPackageDir UP-TO-DATE build 13-Mar-2023 16:13:18 > Task :copyHelp build 13-Mar-2023 16:13:20 > Task :buildIndices build 13-Mar-2023 16:13:20 > Task :copyResources build 13-Mar-2023 16:13:20 > Task :copyChannelResources build 13-Mar-2023 16:13:20 build 13-Mar-2023 16:13:20 > Task :createBuildProperties build 13-Mar-2023 16:13:20 Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: build 13-Mar-2023 16:13:20 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 13-Mar-2023 16:13:20 build 13-Mar-2023 16:13:20 > Task :buildResources build 13-Mar-2023 16:13:20 > Task :copyDocs build 13-Mar-2023 16:13:20 build 13-Mar-2023 16:13:20 > Task :convertMdFiles build 13-Mar-2023 16:13:20 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/resources/doc_build/doc/README-DMG_creation.html build 13-Mar-2023 16:13:20 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/resources/doc_build/doc/releaseprocess.html build 13-Mar-2023 16:13:20 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html build 13-Mar-2023 16:13:20 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/resources/doc_build/doc/building.html build 13-Mar-2023 16:13:20 build 13-Mar-2023 16:13:20 > Task :releasesTemplates FAILED build 13-Mar-2023 16:13:20 Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: error 13-Mar-2023 16:13:20 error 13-Mar-2023 16:13:20 FAILURE: Build failed with an exception. error 13-Mar-2023 16:13:20 error 13-Mar-2023 16:13:20 * Where: error 13-Mar-2023 16:13:20 Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build.gradle' line: 1499 error 13-Mar-2023 16:13:20 error 13-Mar-2023 16:13:20 * What went wrong: error 13-Mar-2023 16:13:20 Execution failed for task ':releasesTemplates'. error 13-Mar-2023 16:13:20 > File /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/help/markdown/releases/release-2_11.md must be created for RELEASE error 13-Mar-2023 16:13:20 error 13-Mar-2023 16:13:20 * Try: error 13-Mar-2023 16:13:20 > Run with --stacktrace option to get the stack trace. error 13-Mar-2023 16:13:20 > Run with --info or --debug option to get more log output. error 13-Mar-2023 16:13:20 > Run with --scan to get full insights. error 13-Mar-2023 16:13:20 error 13-Mar-2023 16:13:20 * Get more help at https://help.gradle.org error 13-Mar-2023 16:13:20 error 13-Mar-2023 16:13:20 BUILD FAILED in 3s build 13-Mar-2023 16:13:20 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 13-Mar-2023 16:13:20 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 13-Mar-2023 16:13:20 build 13-Mar-2023 16:13:20 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. build 13-Mar-2023 16:13:20 build 13-Mar-2023 16:13:20 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. build 13-Mar-2023 16:13:20 build 13-Mar-2023 16:13:20 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings build 13-Mar-2023 16:13:20 build 13-Mar-2023 16:13:20 Execution optimizations have been disabled for 2 invalid unit(s) of work during this build to ensure correctness. build 13-Mar-2023 16:13:20 Please consult deprecation warnings for more details. build 13-Mar-2023 16:13:20 10 actionable tasks: 9 executed, 1 up-to-date simple 13-Mar-2023 16:13:20 simple 13-Mar-2023 16:13:20 Failing task since return code of [/home/bamboo/buildtools/gradle/bin/gradle -x test -PJAVA_VERSION=11 -PCHANNEL=RELEASE -PJALVIEW_VERSION=2.11 clean makeDist shadowJar getdown] was 1 while expected 0 simple 13-Mar-2023 16:13:20 Finished task 'Jalview distribution for Java 11' with result: Failed simple 13-Mar-2023 16:13:20 Running post build plugin 'NCover Results Collector' simple 13-Mar-2023 16:13:20 Running post build plugin 'Artifact Copier' simple 13-Mar-2023 16:13:20 Publishing an artifact: Jalview executables error 13-Mar-2023 16:13:20 Unable to publish artifact [Jalview executables]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/libs does not exist. simple 13-Mar-2023 16:13:20 The artifact hasn't been successfully published after 1.684 ms simple 13-Mar-2023 16:13:20 Publishing an artifact: install4j installers error 13-Mar-2023 16:13:20 Unable to publish artifact [install4j installers]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/build/install4j does not exist. simple 13-Mar-2023 16:13:20 The artifact hasn't been successfully published after 125.0 μs simple 13-Mar-2023 16:13:20 Publishing an artifact: getdown-channel error 13-Mar-2023 16:13:20 Unable to publish artifact [getdown-channel]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/getdown/website does not exist. simple 13-Mar-2023 16:13:20 The artifact hasn't been successfully published after 151.8 μs simple 13-Mar-2023 16:13:20 Publishing an artifact: Jalview getdown launcher error 13-Mar-2023 16:13:20 Unable to publish artifact [Jalview getdown launcher]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GGR-JOB1/getdown/files does not exist. simple 13-Mar-2023 16:13:20 The artifact hasn't been successfully published after 121.6 μs simple 13-Mar-2023 16:13:20 Running post build plugin 'Artifactory Release Management Staging' simple 13-Mar-2023 16:13:20 Running post build plugin 'Artifactory Build Info Copier' simple 13-Mar-2023 16:13:20 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 13-Mar-2023 16:13:20 Running post build plugin 'npm Cache Cleanup' simple 13-Mar-2023 16:13:20 Running post build plugin 'Clover Results Collector' simple 13-Mar-2023 16:13:20 Running post build plugin 'Docker Container Cleanup' simple 13-Mar-2023 16:13:20 Finalising the build... simple 13-Mar-2023 16:13:20 Stopping timer. simple 13-Mar-2023 16:13:20 Build JB-GGR-JOB1-8 completed. simple 13-Mar-2023 16:13:20 Running on server: post build plugin 'NCover Results Collector' simple 13-Mar-2023 16:13:20 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 13-Mar-2023 16:13:20 Running on server: post build plugin 'Clover Delta Calculator' simple 13-Mar-2023 16:13:20 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 13-Mar-2023 16:13:20 All post build plugins have finished simple 13-Mar-2023 16:13:20 Generating build results summary... simple 13-Mar-2023 16:13:20 Saving build results to disk... simple 13-Mar-2023 16:13:20 Logging substituted variables... simple 13-Mar-2023 16:13:20 Indexing build results... simple 13-Mar-2023 16:13:20 Finished building JB-GGR-JOB1-8.