simple	28-May-2026 15:40:23	Build Jalview Builds - Gradle Develop Build - patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts - Clover and Tests #3 (JB-GDB747-JOB1-3) started building on agent Default Agent
simple	28-May-2026 15:40:23	
simple	28-May-2026 15:40:23	Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1
simple	28-May-2026 15:40:23	Executing build Jalview Builds - Gradle Develop Build - patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts - Clover and Tests #3 (JB-GDB747-JOB1-3)
simple	28-May-2026 15:40:23	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	28-May-2026 15:40:23	Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1
simple	28-May-2026 15:40:23	Updating source code to revision: 6a7235f462b663d348cdbc6a03f0b3016af28fd3
simple	28-May-2026 15:40:23	Fetching 'refs/heads/patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts' from 'https://gitlab.jalview.org/jalview/jalview.git'.
simple	28-May-2026 15:40:24	Checking out revision 6a7235f462b663d348cdbc6a03f0b3016af28fd3.
simple	28-May-2026 15:40:24	From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0
simple	28-May-2026 15:40:24	   378b2a6..6a7235f  patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts -> origin/patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts
simple	28-May-2026 15:40:24	 * [new branch]      patch/JAL-4478_r212_initialpatch -> origin/patch/JAL-4478_r212_initialpatch
simple	28-May-2026 15:40:24	 * [new branch]      spike/na_hack_JAL-4673 -> origin/spike/na_hack_JAL-4673
simple	28-May-2026 15:40:24	Already on 'patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts'
simple	28-May-2026 15:40:24	Your branch is behind 'origin/patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts' by 1 commit, and can be fast-forwarded.
simple	28-May-2026 15:40:24	  (use "git pull" to update your local branch)
simple	28-May-2026 15:40:24	HEAD is now at 6a7235f JAL-4658 fix up failing test due to the annotation score model
simple	28-May-2026 15:40:24	Updated source code to revision: 6a7235f462b663d348cdbc6a03f0b3016af28fd3
simple	28-May-2026 15:40:24	Finished task 'Checkout Default Repository' with result: Success
simple	28-May-2026 15:40:24	Running pre-build action: VCS Version Collector
simple	28-May-2026 15:40:24	Running pre-build action: Artifactory Release Staging
simple	28-May-2026 15:40:24	Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	28-May-2026 15:40:24	Bamboo Artifactory Plugin version: 2.6.2
command	28-May-2026 15:40:24	Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts - Clover and Tests #3 (JB-GDB747-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_repository_revision_number=6a7235f462b663d348cdbc6a03f0b3016af28fd3\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB747-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB747-JOB1\nbamboo_shortPlanName=patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB747-JOB1-3\nbamboo_repository_48169034_git_branch=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - 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build	28-May-2026 15:40:24	2414
build	28-May-2026 15:40:26	
build	28-May-2026 15:40:26	> Configure project :
build	28-May-2026 15:40:26	Using properties from file './utils/channels/default/channel_gradle.properties'
build	28-May-2026 15:40:26	JALVIEW_VERSION is set to '2.12.0'
build	28-May-2026 15:40:26	HEADLESS BUILD
build	28-May-2026 15:40:26	J2S ENABLED
build	28-May-2026 15:40:26	Using a LOCAL profile.
build	28-May-2026 15:40:26	eclipseDir exists
build	28-May-2026 15:40:27	
build	28-May-2026 15:40:27	> Task :clean
build	28-May-2026 15:40:27	> Task :cleanClover
build	28-May-2026 15:40:27	> Task :cleanTest UP-TO-DATE
build	28-May-2026 15:40:29	
build	28-May-2026 15:40:29	> Task :cloverInstrJava
build	28-May-2026 15:40:29	Clover: About to instrument 1256 files
build	28-May-2026 15:40:29	OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
build	28-May-2026 15:40:29	Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover.db'.
build	28-May-2026 15:40:29	Processing files at 1.9 source level.
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:32	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	28-May-2026 15:40:33	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
build	28-May-2026 15:40:39	Clover all over. Instrumented 1256 files (133 packages).
build	28-May-2026 15:40:41	
build	28-May-2026 15:40:41	> Task :cloverInstrTests
build	28-May-2026 15:40:41	Clover: About to instrument test files
build	28-May-2026 15:40:41	OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
build	28-May-2026 15:40:41	Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover.db'.
build	28-May-2026 15:40:41	Processing files at 1.9 source level.
build	28-May-2026 15:40:44	Clover all over. Instrumented 315 files (58 packages).
build	28-May-2026 15:40:44	1771 test methods detected.
build	28-May-2026 15:40:44	
build	28-May-2026 15:40:44	> Task :cloverInstr
build	28-May-2026 15:40:46	
build	28-May-2026 15:40:46	> Task :compileCloverJava
build	28-May-2026 15:40:46	Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons:
build	28-May-2026 15:40:46	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:40:46	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:40:46	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:40:46	Setting target compatibility to 11
error	28-May-2026 15:41:00	Note: Some input files use or override a deprecated API.
error	28-May-2026 15:41:00	Note: Recompile with -Xlint:deprecation for details.
error	28-May-2026 15:41:00	Note: Some input files use unchecked or unsafe operations.
error	28-May-2026 15:41:00	Note: Recompile with -Xlint:unchecked for details.
build	28-May-2026 15:41:05	
build	28-May-2026 15:41:05	> Task :processCloverResources NO-SOURCE
build	28-May-2026 15:41:05	> Task :cloverClasses
build	28-May-2026 15:41:06	> Task :copyHelp
build	28-May-2026 15:41:07	> Task :buildIndices
build	28-May-2026 15:41:07	> Task :copyResources
build	28-May-2026 15:41:07	> Task :copyChannelResources
build	28-May-2026 15:41:07	
build	28-May-2026 15:41:07	> Task :createBuildProperties
build	28-May-2026 15:41:07	Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
build	28-May-2026 15:41:07	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:07	
build	28-May-2026 15:41:07	> Task :buildResources
build	28-May-2026 15:41:07	> Task :copyDocs
build	28-May-2026 15:41:07	
build	28-May-2026 15:41:07	> Task :convertMdFiles
build	28-May-2026 15:41:07	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
build	28-May-2026 15:41:07	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build/doc/releaseprocess.html
build	28-May-2026 15:41:07	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
build	28-May-2026 15:41:07	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build/doc/JalviewJS-API.html
build	28-May-2026 15:41:07	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build/doc/building.html
build	28-May-2026 15:41:07	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build/doc/addingWebClient.html
build	28-May-2026 15:41:07	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build/doc/jalview-projects.html
build	28-May-2026 15:41:07	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build/doc/JalviewJS-startupParams.html
build	28-May-2026 15:41:07	
build	28-May-2026 15:41:07	> Task :releasesTemplates
build	28-May-2026 15:41:07	Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
build	28-May-2026 15:41:07	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:07	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:07	Stripping rc/test/etc for TEST
build	28-May-2026 15:41:07	Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/help/markdown/whatsnew/whatsnew-TEST.md
build	28-May-2026 15:41:07	
build	28-May-2026 15:41:07	> Task :prepare
build	28-May-2026 15:41:09	
build	28-May-2026 15:41:09	> Task :compileJava
build	28-May-2026 15:41:09	Setting target compatibility to 11
error	28-May-2026 15:41:15	Note: Some input files use or override a deprecated API.
error	28-May-2026 15:41:15	Note: Recompile with -Xlint:deprecation for details.
error	28-May-2026 15:41:15	Note: Some input files use unchecked or unsafe operations.
error	28-May-2026 15:41:15	Note: Recompile with -Xlint:unchecked for details.
build	28-May-2026 15:41:17	
build	28-May-2026 15:41:17	> Task :compileTestJava
build	28-May-2026 15:41:17	Execution optimizations have been disabled for task ':compileTestJava' to ensure correctness due to the following reasons:
build	28-May-2026 15:41:17	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-classes'. Reason: Task ':compileTestJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:17	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-test-instr'. Reason: Task ':compileTestJava' uses this output of task ':cloverInstrTests' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:17	Setting target compatibility to 11
error	28-May-2026 15:41:23	Note: Some input files use or override a deprecated API.
error	28-May-2026 15:41:23	Note: Recompile with -Xlint:deprecation for details.
error	28-May-2026 15:41:23	Note: Some input files use unchecked or unsafe operations.
error	28-May-2026 15:41:23	Note: Recompile with -Xlint:unchecked for details.
build	28-May-2026 15:41:24	
build	28-May-2026 15:41:24	> Task :processTestResources
build	28-May-2026 15:41:24	Execution optimizations have been disabled for task ':processTestResources' to ensure correctness due to the following reasons:
build	28-May-2026 15:41:24	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:24	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:24	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:24	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:24	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:24	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:24	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:24	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	28-May-2026 15:41:24	
build	28-May-2026 15:41:24	> Task :testClasses
build	28-May-2026 15:41:26	
build	28-May-2026 15:41:26	> Task :testTask0
build	28-May-2026 15:41:26	Running tests WITH clover
error	28-May-2026 15:41:28	WARNING: An illegal reflective access operation has occurred
error	28-May-2026 15:41:28	WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
error	28-May-2026 15:41:28	WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
error	28-May-2026 15:41:28	WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
error	28-May-2026 15:41:28	WARNING: All illegal access operations will be denied in a future release
build	28-May-2026 15:46:25	
build	28-May-2026 15:46:25	> Task :testTask1
build	28-May-2026 15:46:25	Running tests WITH clover
error	28-May-2026 15:46:26	WARNING: An illegal reflective access operation has occurred
error	28-May-2026 15:46:26	WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
error	28-May-2026 15:46:26	WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
error	28-May-2026 15:46:26	WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
error	28-May-2026 15:46:26	WARNING: All illegal access operations will be denied in a future release
build	28-May-2026 15:48:33	
build	28-May-2026 15:48:33	> Task :testTask2
build	28-May-2026 15:48:33	Running tests WITH clover
error	28-May-2026 15:48:35	WARNING: An illegal reflective access operation has occurred
error	28-May-2026 15:48:35	WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
error	28-May-2026 15:48:35	WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
error	28-May-2026 15:48:35	WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
error	28-May-2026 15:48:35	WARNING: All illegal access operations will be denied in a future release
build	28-May-2026 15:48:38	
build	28-May-2026 15:48:38	> Task :testTask3
build	28-May-2026 15:48:38	Running tests WITH clover
error	28-May-2026 15:48:39	WARNING: An illegal reflective access operation has occurred
error	28-May-2026 15:48:39	WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
error	28-May-2026 15:48:39	WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
error	28-May-2026 15:48:39	WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
error	28-May-2026 15:48:39	WARNING: All illegal access operations will be denied in a future release
build	28-May-2026 15:48:58	
build	28-May-2026 15:48:58	> Task :test NO-SOURCE
build	28-May-2026 15:48:58	┌──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┐
build	28-May-2026 15:48:58	│jalview:testTask0 results: SUCCESS (2104 tests, 2104 successes, 0 failures, 0 skipped) in 4 minutes, 58.366 seconds   │
build	28-May-2026 15:48:58	│Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/reports/tests/testTask0/index.html│
build	28-May-2026 15:48:58	├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
build	28-May-2026 15:48:58	│jalview:testTask1 results: SUCCESS (62 tests, 62 successes, 0 failures, 0 skipped) in 2 minutes, 8.327 seconds        │
build	28-May-2026 15:48:58	│Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/reports/tests/testTask1/index.html│
build	28-May-2026 15:48:58	├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
build	28-May-2026 15:48:58	│jalview:testTask2 results: SUCCESS (1 tests, 1 successes, 0 failures, 0 skipped) in 5.177 seconds                     │
build	28-May-2026 15:48:58	│Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/reports/tests/testTask2/index.html│
build	28-May-2026 15:48:58	├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
build	28-May-2026 15:48:58	│jalview:testTask3 results: SUCCESS (14 tests, 13 successes, 0 failures, 1 skipped) in 21.625 seconds                  │
build	28-May-2026 15:48:58	│Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/reports/tests/testTask3/index.html│
build	28-May-2026 15:48:58	├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
build	28-May-2026 15:48:58	│OVERALL: results: SUCCESS (2181 tests, 2180 successes, 0 failures, 1 skipped) in 6 minutes, 93.495 seconds            │
build	28-May-2026 15:48:58	└──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘
build	28-May-2026 15:48:58	
build	28-May-2026 15:48:58	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	28-May-2026 15:48:58	
build	28-May-2026 15:48:58	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	28-May-2026 15:48:58	
build	28-May-2026 15:48:58	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	28-May-2026 15:48:58	
build	28-May-2026 15:48:58	Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness.
build	28-May-2026 15:48:58	Please consult deprecation warnings for more details.
build	28-May-2026 15:48:58	
build	28-May-2026 15:48:58	BUILD SUCCESSFUL in 8m 33s
build	28-May-2026 15:48:58	21 actionable tasks: 20 executed, 1 up-to-date
simple	28-May-2026 15:48:58	Finished task 'Run tests with openclover under gradle' with result: Success
simple	28-May-2026 15:48:58	Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	28-May-2026 15:48:58	Bamboo Artifactory Plugin version: 2.6.2
command	28-May-2026 15:48:58	Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts - Clover and Tests #3 (JB-GDB747-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_repository_revision_number=6a7235f462b663d348cdbc6a03f0b3016af28fd3\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB747-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB747-JOB1\nbamboo_shortPlanName=patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB747-JOB1-3\nbamboo_repository_48169034_git_branch=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_shortPlanKey=GDB747\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6a7235f462b663d348cdbc6a03f0b3016af28fd3\nbamboo_buildTimeStamp=2026-05-28T15:40:23.872+01:00\nbamboo_repository_previous_revision_number=378b2a60f0e594a59de7f5ac31f20b1148702c0a\nbamboo_planRepository_previousRevision=378b2a60f0e594a59de7f5ac31f20b1148702c0a\nbamboo_repository_git_branch=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_buildResultKey=JB-GDB747-JOB1-3\nbamboo_repository_branch_name=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6a7235f462b663d348cdbc6a03f0b3016af28fd3\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_48169034_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_repository_name=Jalview Gitlab\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_repository_48169034_branch_name=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_jobFailed=false\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=378b2a60f0e594a59de7f5ac31f20b1148702c0a\nbamboo_planRepository_branchDisplayName=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_repository_48169034_name=Jalview Gitlab\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nbamboo_repository_48169034_previous_revision_number=378b2a60f0e594a59de7f5ac31f20b1148702c0a\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-47972499\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_repository_48169034_revision_number=6a7235f462b663d348cdbc6a03f0b3016af28fd3\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1\nbamboo_planKey=JB-GDB747\nbamboo_repository_48169034_git_username=\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	28-May-2026 15:48:59	2414
build	28-May-2026 15:49:05	
build	28-May-2026 15:49:05	> Configure project :
build	28-May-2026 15:49:05	Using properties from file './utils/channels/default/channel_gradle.properties'
build	28-May-2026 15:49:05	JALVIEW_VERSION is set to '2.12.0'
build	28-May-2026 15:49:05	HEADLESS BUILD
build	28-May-2026 15:49:05	J2S ENABLED
build	28-May-2026 15:49:05	Using a LOCAL profile.
build	28-May-2026 15:49:06	eclipseDir exists
build	28-May-2026 15:49:08	
build	28-May-2026 15:49:08	> Task :cloverHtmlReport
build	28-May-2026 15:49:08	OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
build	28-May-2026 15:49:10	Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/reports/clover'
build	28-May-2026 15:50:06	Done. Processed 137 packages in 55808ms (407ms per package).
build	28-May-2026 15:50:13	
build	28-May-2026 15:50:13	> Task :cloverXmlReport
build	28-May-2026 15:50:13	OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
build	28-May-2026 15:50:16	Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/reports/clover/clover.xml'
build	28-May-2026 15:50:16	
build	28-May-2026 15:50:16	> Task :cloverReport
build	28-May-2026 15:50:16	
build	28-May-2026 15:50:16	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	28-May-2026 15:50:16	
build	28-May-2026 15:50:16	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	28-May-2026 15:50:16	
build	28-May-2026 15:50:16	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	28-May-2026 15:50:16	
build	28-May-2026 15:50:16	BUILD SUCCESSFUL in 1m 17s
build	28-May-2026 15:50:16	2 actionable tasks: 2 executed
simple	28-May-2026 15:50:16	Finished task 'Clover Report' with result: Success
simple	28-May-2026 15:50:16	Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng'
simple	28-May-2026 15:50:16	Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1...
simple	28-May-2026 15:50:16	Finished task 'TestNG Parser' with result: Success
simple	28-May-2026 15:50:16	Running post build plugin 'NCover Results Collector'
simple	28-May-2026 15:50:16	Running post build plugin 'Artifact Copier'
simple	28-May-2026 15:50:16	Publishing an artifact: Clover Report (System)
simple	28-May-2026 15:50:18	Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 2.043 s
simple	28-May-2026 15:50:18	Publishing an artifact: TestNG report
error	28-May-2026 15:50:18	Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB747-JOB1/build/reports/tests/test does not exist.
simple	28-May-2026 15:50:18	The artifact hasn't been successfully published after 3.186 ms
simple	28-May-2026 15:50:18	Running post build plugin 'Artifactory Release Management Staging'
simple	28-May-2026 15:50:18	Running post build plugin 'Artifactory Build Info Copier'
simple	28-May-2026 15:50:18	Running post build plugin 'Artifactory Gradle Properties Info Copier'
simple	28-May-2026 15:50:18	Running post build plugin 'npm Cache Cleanup'
simple	28-May-2026 15:50:18	Running post build plugin 'Clover Results Collector'
simple	28-May-2026 15:50:18	Running post build plugin 'Docker Container Cleanup'
simple	28-May-2026 15:50:18	Finalising the build...
simple	28-May-2026 15:50:18	Stopping timer.
simple	28-May-2026 15:50:18	Build JB-GDB747-JOB1-3 completed.
simple	28-May-2026 15:50:18	Running on server: post build plugin 'NCover Results Collector'
simple	28-May-2026 15:50:18	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	28-May-2026 15:50:18	Running on server: post build plugin 'Clover Delta Calculator'
simple	28-May-2026 15:50:18	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	28-May-2026 15:50:18	All post build plugins have finished
simple	28-May-2026 15:50:18	Generating build results summary...
simple	28-May-2026 15:50:19	Saving build results to disk...
simple	28-May-2026 15:50:19	Logging substituted variables...
simple	28-May-2026 15:50:19	Indexing build results...
simple	28-May-2026 15:50:19	Finished building JB-GDB747-JOB1-3.