simple	24-Feb-2026 21:41:24	Build Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #8 (JB-GDB745-JOB1-8) started building on agent Default Agent
simple	24-Feb-2026 21:41:24	
simple	24-Feb-2026 21:41:24	Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1
simple	24-Feb-2026 21:41:24	Executing build Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #8 (JB-GDB745-JOB1-8)
simple	24-Feb-2026 21:41:24	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	24-Feb-2026 21:41:24	Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1
simple	24-Feb-2026 21:41:24	Updating source code to revision: 4aa704436a248f8a5fc3d53726ca8447232e8587
simple	24-Feb-2026 21:41:24	Fetching 'refs/heads/epic/JAL-4320_gradle_upgrade_to_gradle9' from 'https://gitlab.jalview.org/jalview/jalview.git'.
simple	24-Feb-2026 21:41:25	Checking out revision 4aa704436a248f8a5fc3d53726ca8447232e8587.
simple	24-Feb-2026 21:41:25	From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0
simple	24-Feb-2026 21:41:25	   2b0da4b..4aa7044  epic/JAL-4320_gradle_upgrade_to_gradle9 -> origin/epic/JAL-4320_gradle_upgrade_to_gradle9
simple	24-Feb-2026 21:41:26	Already on 'epic/JAL-4320_gradle_upgrade_to_gradle9'
simple	24-Feb-2026 21:41:26	Your branch is behind 'origin/epic/JAL-4320_gradle_upgrade_to_gradle9' by 1 commit, and can be fast-forwarded.
simple	24-Feb-2026 21:41:26	  (use "git pull" to update your local branch)
simple	24-Feb-2026 21:41:26	HEAD is now at 4aa7044 JAL-4320 JAL-4646 JAL-4653 Building and tests passing under Java 25
simple	24-Feb-2026 21:41:26	Updated source code to revision: 4aa704436a248f8a5fc3d53726ca8447232e8587
simple	24-Feb-2026 21:41:26	Finished task 'Checkout Default Repository' with result: Success
simple	24-Feb-2026 21:41:26	Running pre-build action: VCS Version Collector
simple	24-Feb-2026 21:41:26	Running pre-build action: Artifactory Release Staging
simple	24-Feb-2026 21:41:26	Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	24-Feb-2026 21:41:26	Bamboo Artifactory Plugin version: 2.6.2
command	24-Feb-2026 21:41:26	Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #8 (JB-GDB745-JOB1-8)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_repository_revision_number=4aa704436a248f8a5fc3d53726ca8447232e8587\nbamboo_repository_48169021_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-8\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB745-JOB1\nbamboo_repository_48169021_previous_revision_number=2b0da4b99d2e67d83287d7b54133328408302ebc\nbamboo_shortPlanName=epic-JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=8\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-8\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9\nbamboo_shortPlanKey=GDB745\nbamboo_repository_48169021_revision_number=4aa704436a248f8a5fc3d53726ca8447232e8587\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=4aa704436a248f8a5fc3d53726ca8447232e8587\nbamboo_buildTimeStamp=2026-02-24T21:41:24.600Z\nbamboo_repository_previous_revision_number=2b0da4b99d2e67d83287d7b54133328408302ebc\nbamboo_planRepository_previousRevision=2b0da4b99d2e67d83287d7b54133328408302ebc\nbamboo_repository_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_buildResultKey=JB-GDB745-JOB1-8\nbamboo_repository_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_repository_48169021_name=Jalview Gitlab\nbamboo_planRepository_1_revision=4aa704436a248f8a5fc3d53726ca8447232e8587\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_repository_48169021_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_repository_48169021_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=2b0da4b99d2e67d83287d7b54133328408302ebc\nbamboo_planRepository_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-47972473\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_repository_48169021_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\nbamboo_planKey=JB-GDB745\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	24-Feb-2026 21:41:26	2414
build	24-Feb-2026 21:41:27	Starting a Gradle Daemon (subsequent builds will be faster)
error	24-Feb-2026 21:41:40	
error	24-Feb-2026 21:41:40	FAILURE: Build failed with an exception.
error	24-Feb-2026 21:41:40	
error	24-Feb-2026 21:41:40	* What went wrong:
error	24-Feb-2026 21:41:40	A problem occurred configuring root project 'jalview'.
error	24-Feb-2026 21:41:40	> Could not resolve all files for configuration ':classpath'.
error	24-Feb-2026 21:41:40	   > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.2.0.
error	24-Feb-2026 21:41:40	     Required by:
error	24-Feb-2026 21:41:40	         project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.2.0
error	24-Feb-2026 21:41:40	      > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.2.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but:
error	24-Feb-2026 21:41:40	          - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a library, packaged as a jar, and its dependencies declared externally:
error	24-Feb-2026 21:41:40	              - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11
error	24-Feb-2026 21:41:40	              - Other compatible attribute:
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:40	          - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally:
error	24-Feb-2026 21:41:40	              - Incompatible because this component declares documentation and the consumer needed a library
error	24-Feb-2026 21:41:40	              - Other compatible attributes:
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about its target Java version (required compatibility with Java 11)
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about its elements (required them packaged as a jar)
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:40	          - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally:
error	24-Feb-2026 21:41:40	              - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11
error	24-Feb-2026 21:41:40	              - Other compatible attribute:
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:40	          - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally:
error	24-Feb-2026 21:41:40	              - Incompatible because this component declares documentation and the consumer needed a library
error	24-Feb-2026 21:41:40	              - Other compatible attributes:
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about its target Java version (required compatibility with Java 11)
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about its elements (required them packaged as a jar)
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:40	   > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1.
error	24-Feb-2026 21:41:40	     Required by:
error	24-Feb-2026 21:41:40	         project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1
error	24-Feb-2026 21:41:40	      > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but:
error	24-Feb-2026 21:41:40	          - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally:
error	24-Feb-2026 21:41:40	              - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2'
error	24-Feb-2026 21:41:40	          - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally:
error	24-Feb-2026 21:41:40	              - Incompatible because this component declares documentation and the consumer needed a library
error	24-Feb-2026 21:41:40	              - Other compatible attributes:
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about its target Java version (required compatibility with Java 11)
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about its elements (required them packaged as a jar)
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:40	          - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally:
error	24-Feb-2026 21:41:40	              - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11
error	24-Feb-2026 21:41:40	              - Other compatible attribute:
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:40	          - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally:
error	24-Feb-2026 21:41:40	              - Incompatible because this component declares documentation and the consumer needed a library
error	24-Feb-2026 21:41:40	              - Other compatible attributes:
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about its target Java version (required compatibility with Java 11)
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about its elements (required them packaged as a jar)
error	24-Feb-2026 21:41:40	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:40	
error	24-Feb-2026 21:41:40	* Try:
error	24-Feb-2026 21:41:40	> Run with --stacktrace option to get the stack trace.
error	24-Feb-2026 21:41:40	> Run with --info or --debug option to get more log output.
error	24-Feb-2026 21:41:40	> Run with --scan to get full insights.
error	24-Feb-2026 21:41:40	
error	24-Feb-2026 21:41:40	* Get more help at https://help.gradle.org
error	24-Feb-2026 21:41:40	
error	24-Feb-2026 21:41:40	BUILD FAILED in 14s
simple	24-Feb-2026 21:41:41	
simple	24-Feb-2026 21:41:41	Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0
simple	24-Feb-2026 21:41:41	Finished task 'Run tests with openclover under gradle' with result: Failed
simple	24-Feb-2026 21:41:41	Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	24-Feb-2026 21:41:41	Bamboo Artifactory Plugin version: 2.6.2
command	24-Feb-2026 21:41:41	Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #8 (JB-GDB745-JOB1-8)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_repository_revision_number=4aa704436a248f8a5fc3d53726ca8447232e8587\nbamboo_repository_48169021_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-8\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB745-JOB1\nbamboo_repository_48169021_previous_revision_number=2b0da4b99d2e67d83287d7b54133328408302ebc\nbamboo_shortPlanName=epic-JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=8\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-8\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9\nbamboo_shortPlanKey=GDB745\nbamboo_repository_48169021_revision_number=4aa704436a248f8a5fc3d53726ca8447232e8587\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=4aa704436a248f8a5fc3d53726ca8447232e8587\nbamboo_buildTimeStamp=2026-02-24T21:41:24.600Z\nbamboo_repository_previous_revision_number=2b0da4b99d2e67d83287d7b54133328408302ebc\nbamboo_planRepository_previousRevision=2b0da4b99d2e67d83287d7b54133328408302ebc\nbamboo_repository_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_buildResultKey=JB-GDB745-JOB1-8\nbamboo_repository_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_repository_48169021_name=Jalview Gitlab\nbamboo_planRepository_1_revision=4aa704436a248f8a5fc3d53726ca8447232e8587\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_repository_48169021_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=true\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_repository_48169021_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_jobFailed=true\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=2b0da4b99d2e67d83287d7b54133328408302ebc\nbamboo_planRepository_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-47972473\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_repository_48169021_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\nbamboo_planKey=JB-GDB745\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	24-Feb-2026 21:41:41	2414
error	24-Feb-2026 21:41:44	
error	24-Feb-2026 21:41:44	FAILURE: Build failed with an exception.
error	24-Feb-2026 21:41:44	
error	24-Feb-2026 21:41:44	* What went wrong:
error	24-Feb-2026 21:41:44	A problem occurred configuring root project 'jalview'.
error	24-Feb-2026 21:41:44	> Could not resolve all files for configuration ':classpath'.
error	24-Feb-2026 21:41:44	   > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.2.0.
error	24-Feb-2026 21:41:44	     Required by:
error	24-Feb-2026 21:41:44	         project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.2.0
error	24-Feb-2026 21:41:44	      > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.2.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but:
error	24-Feb-2026 21:41:44	          - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a library, packaged as a jar, and its dependencies declared externally:
error	24-Feb-2026 21:41:44	              - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11
error	24-Feb-2026 21:41:44	              - Other compatible attribute:
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:44	          - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally:
error	24-Feb-2026 21:41:44	              - Incompatible because this component declares documentation and the consumer needed a library
error	24-Feb-2026 21:41:44	              - Other compatible attributes:
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about its target Java version (required compatibility with Java 11)
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about its elements (required them packaged as a jar)
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:44	          - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally:
error	24-Feb-2026 21:41:44	              - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11
error	24-Feb-2026 21:41:44	              - Other compatible attribute:
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:44	          - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally:
error	24-Feb-2026 21:41:44	              - Incompatible because this component declares documentation and the consumer needed a library
error	24-Feb-2026 21:41:44	              - Other compatible attributes:
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about its target Java version (required compatibility with Java 11)
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about its elements (required them packaged as a jar)
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:44	   > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1.
error	24-Feb-2026 21:41:44	     Required by:
error	24-Feb-2026 21:41:44	         project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1
error	24-Feb-2026 21:41:44	      > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but:
error	24-Feb-2026 21:41:44	          - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally:
error	24-Feb-2026 21:41:44	              - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2'
error	24-Feb-2026 21:41:44	          - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally:
error	24-Feb-2026 21:41:44	              - Incompatible because this component declares documentation and the consumer needed a library
error	24-Feb-2026 21:41:44	              - Other compatible attributes:
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about its target Java version (required compatibility with Java 11)
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about its elements (required them packaged as a jar)
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:44	          - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally:
error	24-Feb-2026 21:41:44	              - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11
error	24-Feb-2026 21:41:44	              - Other compatible attribute:
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:44	          - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally:
error	24-Feb-2026 21:41:44	              - Incompatible because this component declares documentation and the consumer needed a library
error	24-Feb-2026 21:41:44	              - Other compatible attributes:
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about its target Java version (required compatibility with Java 11)
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about its elements (required them packaged as a jar)
error	24-Feb-2026 21:41:44	                  - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2')
error	24-Feb-2026 21:41:44	
error	24-Feb-2026 21:41:44	* Try:
error	24-Feb-2026 21:41:44	> Run with --stacktrace option to get the stack trace.
error	24-Feb-2026 21:41:44	> Run with --info or --debug option to get more log output.
error	24-Feb-2026 21:41:44	> Run with --scan to get full insights.
error	24-Feb-2026 21:41:44	
error	24-Feb-2026 21:41:44	* Get more help at https://help.gradle.org
error	24-Feb-2026 21:41:44	
error	24-Feb-2026 21:41:44	BUILD FAILED in 3s
simple	24-Feb-2026 21:41:45	
simple	24-Feb-2026 21:41:45	Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0
simple	24-Feb-2026 21:41:45	Finished task 'Clover Report' with result: Failed
simple	24-Feb-2026 21:41:45	Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng'
simple	24-Feb-2026 21:41:45	Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1...
simple	24-Feb-2026 21:41:45	Failing task since test cases were expected but none were found.
simple	24-Feb-2026 21:41:45	Finished task 'TestNG Parser' with result: Failed
simple	24-Feb-2026 21:41:45	Running post build plugin 'NCover Results Collector'
simple	24-Feb-2026 21:41:45	Running post build plugin 'Artifact Copier'
simple	24-Feb-2026 21:41:45	Publishing an artifact: Clover Report (System)
error	24-Feb-2026 21:41:45	Unable to publish artifact [Clover Report (System)]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1/build/reports/clover does not exist.
simple	24-Feb-2026 21:41:45	The artifact hasn't been successfully published after 2.326 ms
simple	24-Feb-2026 21:41:45	Publishing an artifact: TestNG report
error	24-Feb-2026 21:41:45	Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1/build/reports/tests/test does not exist.
simple	24-Feb-2026 21:41:45	The artifact hasn't been successfully published after 70.84 μs
simple	24-Feb-2026 21:41:45	Running post build plugin 'Artifactory Release Management Staging'
simple	24-Feb-2026 21:41:45	Running post build plugin 'Artifactory Build Info Copier'
simple	24-Feb-2026 21:41:45	Running post build plugin 'Artifactory Gradle Properties Info Copier'
simple	24-Feb-2026 21:41:45	Running post build plugin 'npm Cache Cleanup'
simple	24-Feb-2026 21:41:45	Running post build plugin 'Clover Results Collector'
error	24-Feb-2026 21:41:45	Failed to execute plugin 'Clover Results Collector' with error: No file matches the specified pattern:build/reports/clover/clover.xml in [/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1]
simple	24-Feb-2026 21:41:45	Running post build plugin 'Docker Container Cleanup'
simple	24-Feb-2026 21:41:45	Finalising the build...
simple	24-Feb-2026 21:41:45	Stopping timer.
simple	24-Feb-2026 21:41:45	Build JB-GDB745-JOB1-8 completed.
simple	24-Feb-2026 21:41:45	Running on server: post build plugin 'NCover Results Collector'
simple	24-Feb-2026 21:41:45	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	24-Feb-2026 21:41:45	Running on server: post build plugin 'Clover Delta Calculator'
simple	24-Feb-2026 21:41:45	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	24-Feb-2026 21:41:45	All post build plugins have finished
simple	24-Feb-2026 21:41:45	Generating build results summary...
simple	24-Feb-2026 21:41:45	Saving build results to disk...
simple	24-Feb-2026 21:41:45	Logging substituted variables...
simple	24-Feb-2026 21:41:45	Indexing build results...
simple	24-Feb-2026 21:41:45	Finished building JB-GDB745-JOB1-8.