simple 03-Dec-2025 13:28:08 Build Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence - Clover and Tests #3 (JB-GDB733-JOB1-3) started building on agent Default Agent simple 03-Dec-2025 13:28:08 simple 03-Dec-2025 13:28:08 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1 simple 03-Dec-2025 13:28:08 Executing build Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence - Clover and Tests #3 (JB-GDB733-JOB1-3) simple 03-Dec-2025 13:28:08 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 03-Dec-2025 13:28:08 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1 simple 03-Dec-2025 13:28:08 Updating source code to revision: 6343fb679e94dec0d94366f19ed793109bc79aed simple 03-Dec-2025 13:28:08 Fetching 'refs/heads/bug/JAL-4603_Export_files_missing_part_of_sequence' from 'https://gitlab.jalview.org/jalview/jalview.git'. simple 03-Dec-2025 13:28:09 Checking out revision 6343fb679e94dec0d94366f19ed793109bc79aed. simple 03-Dec-2025 13:28:09 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 simple 03-Dec-2025 13:28:09 26c9a08..6343fb6 bug/JAL-4603_Export_files_missing_part_of_sequence -> origin/bug/JAL-4603_Export_files_missing_part_of_sequence simple 03-Dec-2025 13:28:09 Already on 'bug/JAL-4603_Export_files_missing_part_of_sequence' simple 03-Dec-2025 13:28:09 Your branch is behind 'origin/bug/JAL-4603_Export_files_missing_part_of_sequence' by 1 commit, and can be fast-forwarded. simple 03-Dec-2025 13:28:09 (use "git pull" to update your local branch) simple 03-Dec-2025 13:28:09 HEAD is now at 6343fb6 JAL-4603 work around for different return value. still failing due to PA trying to get a nonexistant field simple 03-Dec-2025 13:28:09 Updated source code to revision: 6343fb679e94dec0d94366f19ed793109bc79aed simple 03-Dec-2025 13:28:09 Finished task 'Checkout Default Repository' with result: Success simple 03-Dec-2025 13:28:09 Running pre-build action: VCS Version Collector simple 03-Dec-2025 13:28:09 Running pre-build action: Artifactory Release Staging simple 03-Dec-2025 13:28:09 Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 03-Dec-2025 13:28:09 Bamboo Artifactory Plugin version: 2.6.2 command 03-Dec-2025 13:28:09 Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence - Clover and Tests #3 (JB-GDB733-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_repository_revision_number=6343fb679e94dec0d94366f19ed793109bc79aed\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB733-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB733-JOB1\nbamboo_shortPlanName=bug-JAL-4603_Export_files_missing_part_of_sequence\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB733-JOB1-3\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence\nbamboo_shortPlanKey=GDB733\nbamboo_repository_46498613_revision_number=6343fb679e94dec0d94366f19ed793109bc79aed\nbamboo_shortJobKey=JOB1\nbamboo_repository_46498613_git_branch=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6343fb679e94dec0d94366f19ed793109bc79aed\nbamboo_buildTimeStamp=2025-12-03T13:28:08.902Z\nbamboo_repository_previous_revision_number=26c9a083284a5baa6d35cf7e4ea85ff4fb2e773a\nbamboo_planRepository_previousRevision=26c9a083284a5baa6d35cf7e4ea85ff4fb2e773a\nbamboo_repository_git_branch=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_buildResultKey=JB-GDB733-JOB1-3\nbamboo_repository_branch_name=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6343fb679e94dec0d94366f19ed793109bc79aed\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_repository_46498613_git_username=\nbamboo_repository_46498613_previous_revision_number=26c9a083284a5baa6d35cf7e4ea85ff4fb2e773a\nbamboo_planRepository_branch=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_46498613_branch_name=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=26c9a083284a5baa6d35cf7e4ea85ff4fb2e773a\nbamboo_planRepository_branchDisplayName=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=bug/JAL-4603_Export_files_missing_part_of_sequence\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46302795\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_46498613_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_repository_46498613_name=Jalview Gitlab\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1\nbamboo_planKey=JB-GDB733\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=bug/JAL-4603_Export_files_missing_part_of_sequence\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 03-Dec-2025 13:28:09 444 build 03-Dec-2025 13:28:11 Starting a Gradle Daemon (subsequent builds will be faster) build 03-Dec-2025 13:28:18 build 03-Dec-2025 13:28:18 > Configure project : build 03-Dec-2025 13:28:18 Using properties from file './utils/channels/default/channel_gradle.properties' build 03-Dec-2025 13:28:18 JALVIEW_VERSION is set to '2.11.5.1' build 03-Dec-2025 13:28:18 HEADLESS BUILD build 03-Dec-2025 13:28:18 J2S ENABLED build 03-Dec-2025 13:28:19 Using a LOCAL profile. build 03-Dec-2025 13:28:20 eclipseDir exists build 03-Dec-2025 13:28:21 build 03-Dec-2025 13:28:21 > Task :clean build 03-Dec-2025 13:28:21 > Task :cleanClover build 03-Dec-2025 13:28:21 > Task :cleanTest UP-TO-DATE build 03-Dec-2025 13:28:23 build 03-Dec-2025 13:28:23 > Task :cloverInstrJava build 03-Dec-2025 13:28:23 Clover: About to instrument 1109 files build 03-Dec-2025 13:28:23 OpenClover Version 4.4.1, built on October 11 2019 (build-1020) build 03-Dec-2025 13:28:23 Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover.db'. build 03-Dec-2025 13:28:23 Processing files at 1.9 source level. error 03-Dec-2025 13:28:26 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 03-Dec-2025 13:28:26 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 03-Dec-2025 13:28:26 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 03-Dec-2025 13:28:26 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 03-Dec-2025 13:28:26 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 03-Dec-2025 13:28:26 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 03-Dec-2025 13:28:26 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? build 03-Dec-2025 13:28:33 Clover all over. Instrumented 1109 files (113 packages). build 03-Dec-2025 13:28:36 build 03-Dec-2025 13:28:36 > Task :cloverInstrTests build 03-Dec-2025 13:28:36 Clover: About to instrument test files build 03-Dec-2025 13:28:36 OpenClover Version 4.4.1, built on October 11 2019 (build-1020) build 03-Dec-2025 13:28:36 Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover.db'. build 03-Dec-2025 13:28:36 Processing files at 1.9 source level. build 03-Dec-2025 13:28:39 Clover all over. Instrumented 293 files (52 packages). build 03-Dec-2025 13:28:39 1627 test methods detected. build 03-Dec-2025 13:28:39 build 03-Dec-2025 13:28:39 > Task :cloverInstr build 03-Dec-2025 13:28:42 build 03-Dec-2025 13:28:42 > Task :compileCloverJava build 03-Dec-2025 13:28:42 Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons: build 03-Dec-2025 13:28:42 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:28:42 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:28:42 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:28:42 Setting target compatibility to 11 error 03-Dec-2025 13:29:05 Note: Some input files use or override a deprecated API. error 03-Dec-2025 13:29:05 Note: Recompile with -Xlint:deprecation for details. error 03-Dec-2025 13:29:05 Note: Some input files use unchecked or unsafe operations. error 03-Dec-2025 13:29:05 Note: Recompile with -Xlint:unchecked for details. build 03-Dec-2025 13:29:13 build 03-Dec-2025 13:29:13 > Task :processCloverResources NO-SOURCE build 03-Dec-2025 13:29:13 > Task :cloverClasses build 03-Dec-2025 13:29:13 > Task :copyHelp build 03-Dec-2025 13:29:14 > Task :buildIndices build 03-Dec-2025 13:29:15 > Task :copyResources build 03-Dec-2025 13:29:15 > Task :copyChannelResources build 03-Dec-2025 13:29:15 build 03-Dec-2025 13:29:15 > Task :createBuildProperties build 03-Dec-2025 13:29:15 Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: build 03-Dec-2025 13:29:15 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:15 build 03-Dec-2025 13:29:15 > Task :buildResources build 03-Dec-2025 13:29:15 > Task :copyDocs build 03-Dec-2025 13:29:15 build 03-Dec-2025 13:29:15 > Task :convertMdFiles build 03-Dec-2025 13:29:15 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/doc_build/doc/README-DMG_creation.html build 03-Dec-2025 13:29:15 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/doc_build/doc/releaseprocess.html build 03-Dec-2025 13:29:15 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html build 03-Dec-2025 13:29:15 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/doc_build/doc/building.html build 03-Dec-2025 13:29:15 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/doc_build/doc/jalview-projects.html build 03-Dec-2025 13:29:16 build 03-Dec-2025 13:29:16 > Task :releasesTemplates build 03-Dec-2025 13:29:16 Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: build 03-Dec-2025 13:29:16 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:16 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:16 Stripping rc/test/etc for TEST build 03-Dec-2025 13:29:16 Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/help/markdown/whatsnew/whatsnew-TEST.md build 03-Dec-2025 13:29:16 build 03-Dec-2025 13:29:16 > Task :prepare build 03-Dec-2025 13:29:18 build 03-Dec-2025 13:29:18 > Task :compileJava build 03-Dec-2025 13:29:18 Setting target compatibility to 11 error 03-Dec-2025 13:29:24 Note: Some input files use or override a deprecated API. error 03-Dec-2025 13:29:24 Note: Recompile with -Xlint:deprecation for details. error 03-Dec-2025 13:29:24 Note: Some input files use unchecked or unsafe operations. error 03-Dec-2025 13:29:24 Note: Recompile with -Xlint:unchecked for details. build 03-Dec-2025 13:29:29 build 03-Dec-2025 13:29:29 > Task :compileTestJava build 03-Dec-2025 13:29:29 Execution optimizations have been disabled for task ':compileTestJava' to ensure correctness due to the following reasons: build 03-Dec-2025 13:29:29 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover-classes'. Reason: Task ':compileTestJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:29 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover-test-instr'. Reason: Task ':compileTestJava' uses this output of task ':cloverInstrTests' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:29 Setting target compatibility to 11 error 03-Dec-2025 13:29:35 Note: Some input files use or override a deprecated API. error 03-Dec-2025 13:29:35 Note: Recompile with -Xlint:deprecation for details. error 03-Dec-2025 13:29:35 Note: Some input files use unchecked or unsafe operations. error 03-Dec-2025 13:29:35 Note: Recompile with -Xlint:unchecked for details. build 03-Dec-2025 13:29:36 build 03-Dec-2025 13:29:36 > Task :processTestResources build 03-Dec-2025 13:29:36 Execution optimizations have been disabled for task ':processTestResources' to ensure correctness due to the following reasons: build 03-Dec-2025 13:29:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:36 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 03-Dec-2025 13:29:36 build 03-Dec-2025 13:29:36 > Task :testClasses build 03-Dec-2025 13:29:38 build 03-Dec-2025 13:29:38 > Task :testTask0 build 03-Dec-2025 13:29:38 Running tests WITH clover error 03-Dec-2025 13:29:41 WARNING: An illegal reflective access operation has occurred error 03-Dec-2025 13:29:41 WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName error 03-Dec-2025 13:29:41 WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop error 03-Dec-2025 13:29:41 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations error 03-Dec-2025 13:29:41 WARNING: All illegal access operations will be denied in a future release build 03-Dec-2025 13:30:51 build 03-Dec-2025 13:30:51 Gradle suite > Gradle test > jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations FAILED build 03-Dec-2025 13:30:51 java.lang.AssertionError: expected [26] but found [1] build 03-Dec-2025 13:30:51 at org.testng.Assert.fail(Assert.java:94) build 03-Dec-2025 13:30:51 at org.testng.Assert.failNotEquals(Assert.java:496) build 03-Dec-2025 13:30:51 at org.testng.Assert.assertEquals(Assert.java:125) build 03-Dec-2025 13:30:51 at org.testng.Assert.assertEquals(Assert.java:372) build 03-Dec-2025 13:30:51 at org.testng.Assert.assertEquals(Assert.java:382) build 03-Dec-2025 13:30:51 at jalview.gui.SeqCanvasTest.__CLR4_4_1ptvz2m3t66(SeqCanvasTest.java:90) build 03-Dec-2025 13:30:51 at jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations(SeqCanvasTest.java:53) build 03-Dec-2025 13:30:51 build 03-Dec-2025 13:30:51 Gradle suite > Gradle test > jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_withAnnotations FAILED build 03-Dec-2025 13:30:51 java.lang.IllegalArgumentException: Can't get value of wrappedVisibleWidths from jalview.gui.SeqCanvas[,0,0,564x109,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=9,maximumSize=,minimumSize=,preferredSize=] build 03-Dec-2025 13:30:51 at junit.extensions.PA.getValue(PA.java:158) build 03-Dec-2025 13:30:51 at jalview.gui.SeqCanvasTest.__CLR4_4_164gzpl3t8f(SeqCanvasTest.java:274) build 03-Dec-2025 13:30:51 at jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_withAnnotations(SeqCanvasTest.java:226) build 03-Dec-2025 13:30:51 build 03-Dec-2025 13:30:51 Caused by: build 03-Dec-2025 13:30:51 java.lang.NoSuchFieldException: wrappedVisibleWidths build 03-Dec-2025 13:30:51 at java.base/java.lang.Class.getDeclaredField(Class.java:2411) build 03-Dec-2025 13:30:51 at junit.extensions.PrivilegedAccessor.getField(PrivilegedAccessor.java:639) build 03-Dec-2025 13:30:51 at junit.extensions.PrivilegedAccessor.getField(PrivilegedAccessor.java:648) build 03-Dec-2025 13:30:51 at junit.extensions.PrivilegedAccessor.getField(PrivilegedAccessor.java:648) build 03-Dec-2025 13:30:51 at junit.extensions.PrivilegedAccessor.getField(PrivilegedAccessor.java:648) build 03-Dec-2025 13:30:51 at junit.extensions.PrivilegedAccessor.getField(PrivilegedAccessor.java:648) build 03-Dec-2025 13:30:51 at junit.extensions.PrivilegedAccessor.getField(PrivilegedAccessor.java:648) build 03-Dec-2025 13:30:51 at junit.extensions.PrivilegedAccessor.getValue(PrivilegedAccessor.java:191) build 03-Dec-2025 13:30:51 at junit.extensions.PA.getValue(PA.java:155) build 03-Dec-2025 13:30:51 ... 2 more build 03-Dec-2025 13:32:06 build 03-Dec-2025 13:32:06 Gradle suite > Gradle test > jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree FAILED build 03-Dec-2025 13:32:06 java.lang.NullPointerException build 03-Dec-2025 13:32:06 at jalview.gui.TreePanel.showStructureProviderColouredLines_actionPerformed(TreePanel.java:1136) build 03-Dec-2025 13:32:06 at jalview.jbgui.GTreePanel$11.actionPerformed(GTreePanel.java:240) build 03-Dec-2025 13:32:06 at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967) build 03-Dec-2025 13:32:06 at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308) build 03-Dec-2025 13:32:06 at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405) build 03-Dec-2025 13:32:06 at java.desktop/javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:401) build 03-Dec-2025 13:32:06 at java.desktop/javax.swing.AbstractButton.doClick(AbstractButton.java:369) build 03-Dec-2025 13:32:06 at java.desktop/javax.swing.AbstractButton.doClick(AbstractButton.java:349) build 03-Dec-2025 13:32:06 at jalview.gui.TreePanel.setShowAnnotationAsView(TreePanel.java:944) build 03-Dec-2025 13:32:06 at jalview.gui.TreePanel.setShowAnnotationAs(TreePanel.java:925) build 03-Dec-2025 13:32:06 at jalview.project.Jalview2xmlTests.__CLR4_4_1c9jwor49hq(Jalview2xmlTests.java:1446) build 03-Dec-2025 13:32:06 at jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree(Jalview2xmlTests.java:1416) error 03-Dec-2025 13:34:24 error 03-Dec-2025 13:34:24 1834 tests completed, 3 failed build 03-Dec-2025 13:34:24 There were failing tests. See the report at: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/reports/tests/testTask0/index.html build 03-Dec-2025 13:34:27 build 03-Dec-2025 13:34:27 > Task :testTask1 build 03-Dec-2025 13:34:27 Running tests WITH clover error 03-Dec-2025 13:34:28 WARNING: An illegal reflective access operation has occurred error 03-Dec-2025 13:34:28 WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName error 03-Dec-2025 13:34:28 WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop error 03-Dec-2025 13:34:28 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations error 03-Dec-2025 13:34:28 WARNING: All illegal access operations will be denied in a future release build 03-Dec-2025 13:36:59 build 03-Dec-2025 13:36:59 > Task :testTask2 build 03-Dec-2025 13:36:59 Running tests WITH clover build 03-Dec-2025 13:37:04 build 03-Dec-2025 13:37:04 > Task :testTask3 build 03-Dec-2025 13:37:04 Running tests WITH clover error 03-Dec-2025 13:37:06 WARNING: An illegal reflective access operation has occurred error 03-Dec-2025 13:37:06 WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName error 03-Dec-2025 13:37:06 WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop error 03-Dec-2025 13:37:06 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations error 03-Dec-2025 13:37:06 WARNING: All illegal access operations will be denied in a future release error 03-Dec-2025 13:38:01 error 03-Dec-2025 13:38:01 FAILURE: Build failed with an exception. error 03-Dec-2025 13:38:01 error 03-Dec-2025 13:38:01 * Where: error 03-Dec-2025 13:38:01 Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build.gradle' line: 1967 error 03-Dec-2025 13:38:01 error 03-Dec-2025 13:38:01 * What went wrong: error 03-Dec-2025 13:38:01 Failed tests! error 03-Dec-2025 13:38:01 error 03-Dec-2025 13:38:01 * Try: error 03-Dec-2025 13:38:01 > Run with --stacktrace option to get the stack trace. error 03-Dec-2025 13:38:01 > Run with --info or --debug option to get more log output. error 03-Dec-2025 13:38:01 > Run with --scan to get full insights. error 03-Dec-2025 13:38:01 error 03-Dec-2025 13:38:01 * Get more help at https://help.gradle.org error 03-Dec-2025 13:38:01 error 03-Dec-2025 13:38:01 BUILD FAILED in 9m 52s build 03-Dec-2025 13:38:01 build 03-Dec-2025 13:38:01 > Task :test NO-SOURCE build 03-Dec-2025 13:38:01 ┌──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┐ build 03-Dec-2025 13:38:01 │jalview:testTask0 results: FAILURE (1834 tests, 1831 successes, 3 failures, 0 skipped) in 4 minutes, 47.241 seconds │ build 03-Dec-2025 13:38:01 │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/reports/tests/testTask0/index.html│ build 03-Dec-2025 13:38:01 ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ build 03-Dec-2025 13:38:01 │jalview:testTask1 results: SUCCESS (62 tests, 62 successes, 0 failures, 0 skipped) in 2 minutes, 32.737 seconds │ build 03-Dec-2025 13:38:01 │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/reports/tests/testTask1/index.html│ build 03-Dec-2025 13:38:01 ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ build 03-Dec-2025 13:38:01 │jalview:testTask2 results: SUCCESS (1 tests, 1 successes, 0 failures, 0 skipped) in 4.425 seconds │ build 03-Dec-2025 13:38:01 │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/reports/tests/testTask2/index.html│ build 03-Dec-2025 13:38:01 ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ build 03-Dec-2025 13:38:01 │jalview:testTask3 results: SUCCESS (25 tests, 25 successes, 0 failures, 0 skipped) in 59.353 seconds │ build 03-Dec-2025 13:38:01 │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/reports/tests/testTask3/index.html│ build 03-Dec-2025 13:38:01 ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ build 03-Dec-2025 13:38:01 │OVERALL: results: FAILURE (1922 tests, 1919 successes, 3 failures, 0 skipped) in 6 minutes, 143.756 seconds │ build 03-Dec-2025 13:38:01 └──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘ build 03-Dec-2025 13:38:01 build 03-Dec-2025 13:38:01 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. build 03-Dec-2025 13:38:01 build 03-Dec-2025 13:38:01 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. build 03-Dec-2025 13:38:01 build 03-Dec-2025 13:38:01 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings build 03-Dec-2025 13:38:01 build 03-Dec-2025 13:38:01 Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness. build 03-Dec-2025 13:38:01 Please consult deprecation warnings for more details. build 03-Dec-2025 13:38:01 21 actionable tasks: 20 executed, 1 up-to-date simple 03-Dec-2025 13:38:02 simple 03-Dec-2025 13:38:02 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 simple 03-Dec-2025 13:38:02 Finished task 'Run tests with openclover under gradle' with result: Failed simple 03-Dec-2025 13:38:02 Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 03-Dec-2025 13:38:02 Bamboo Artifactory Plugin version: 2.6.2 command 03-Dec-2025 13:38:02 Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence - Clover and Tests #3 (JB-GDB733-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_repository_revision_number=6343fb679e94dec0d94366f19ed793109bc79aed\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB733-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB733-JOB1\nbamboo_shortPlanName=bug-JAL-4603_Export_files_missing_part_of_sequence\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB733-JOB1-3\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence\nbamboo_shortPlanKey=GDB733\nbamboo_repository_46498613_revision_number=6343fb679e94dec0d94366f19ed793109bc79aed\nbamboo_shortJobKey=JOB1\nbamboo_repository_46498613_git_branch=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=6343fb679e94dec0d94366f19ed793109bc79aed\nbamboo_buildTimeStamp=2025-12-03T13:28:08.902Z\nbamboo_repository_previous_revision_number=26c9a083284a5baa6d35cf7e4ea85ff4fb2e773a\nbamboo_planRepository_previousRevision=26c9a083284a5baa6d35cf7e4ea85ff4fb2e773a\nbamboo_repository_git_branch=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_buildResultKey=JB-GDB733-JOB1-3\nbamboo_repository_branch_name=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=6343fb679e94dec0d94366f19ed793109bc79aed\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=true\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_repository_46498613_git_username=\nbamboo_repository_46498613_previous_revision_number=26c9a083284a5baa6d35cf7e4ea85ff4fb2e773a\nbamboo_planRepository_branch=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_jobFailed=true\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_46498613_branch_name=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=26c9a083284a5baa6d35cf7e4ea85ff4fb2e773a\nbamboo_planRepository_branchDisplayName=bug/JAL-4603_Export_files_missing_part_of_sequence\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=bug/JAL-4603_Export_files_missing_part_of_sequence\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46302795\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_repository_46498613_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_repository_46498613_name=Jalview Gitlab\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1\nbamboo_planKey=JB-GDB733\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=bug/JAL-4603_Export_files_missing_part_of_sequence\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 03-Dec-2025 13:38:02 444 build 03-Dec-2025 13:38:08 build 03-Dec-2025 13:38:08 > Configure project : build 03-Dec-2025 13:38:08 Using properties from file './utils/channels/default/channel_gradle.properties' build 03-Dec-2025 13:38:08 JALVIEW_VERSION is set to '2.11.5.1' build 03-Dec-2025 13:38:08 HEADLESS BUILD build 03-Dec-2025 13:38:08 J2S ENABLED build 03-Dec-2025 13:38:08 Using a LOCAL profile. build 03-Dec-2025 13:38:09 eclipseDir exists build 03-Dec-2025 13:38:12 build 03-Dec-2025 13:38:12 > Task :cloverHtmlReport build 03-Dec-2025 13:38:12 OpenClover Version 4.4.1, built on October 11 2019 (build-1020) build 03-Dec-2025 13:38:14 Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/reports/clover' build 03-Dec-2025 13:39:07 Done. Processed 117 packages in 53348ms (455ms per package). build 03-Dec-2025 13:39:13 build 03-Dec-2025 13:39:13 > Task :cloverXmlReport build 03-Dec-2025 13:39:13 OpenClover Version 4.4.1, built on October 11 2019 (build-1020) build 03-Dec-2025 13:39:14 Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/reports/clover/clover.xml' build 03-Dec-2025 13:39:15 build 03-Dec-2025 13:39:15 > Task :cloverReport build 03-Dec-2025 13:39:15 build 03-Dec-2025 13:39:15 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. build 03-Dec-2025 13:39:15 build 03-Dec-2025 13:39:15 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. build 03-Dec-2025 13:39:15 build 03-Dec-2025 13:39:15 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings build 03-Dec-2025 13:39:15 build 03-Dec-2025 13:39:15 BUILD SUCCESSFUL in 1m 12s build 03-Dec-2025 13:39:15 2 actionable tasks: 2 executed simple 03-Dec-2025 13:39:15 Finished task 'Clover Report' with result: Success simple 03-Dec-2025 13:39:15 Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' simple 03-Dec-2025 13:39:15 Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1... simple 03-Dec-2025 13:39:15 Failing task since 3 failing test cases were found. simple 03-Dec-2025 13:39:15 Finished task 'TestNG Parser' with result: Failed simple 03-Dec-2025 13:39:15 Running post build plugin 'NCover Results Collector' simple 03-Dec-2025 13:39:15 Running post build plugin 'Artifact Copier' simple 03-Dec-2025 13:39:15 Publishing an artifact: Clover Report (System) simple 03-Dec-2025 13:39:20 Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 5.155 s simple 03-Dec-2025 13:39:20 Publishing an artifact: TestNG report error 03-Dec-2025 13:39:20 Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB733-JOB1/build/reports/tests/test does not exist. simple 03-Dec-2025 13:39:20 The artifact hasn't been successfully published after 4.135 ms simple 03-Dec-2025 13:39:20 Running post build plugin 'Artifactory Release Management Staging' simple 03-Dec-2025 13:39:20 Running post build plugin 'Artifactory Build Info Copier' simple 03-Dec-2025 13:39:20 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 03-Dec-2025 13:39:20 Running post build plugin 'npm Cache Cleanup' simple 03-Dec-2025 13:39:20 Running post build plugin 'Clover Results Collector' simple 03-Dec-2025 13:39:20 Running post build plugin 'Docker Container Cleanup' simple 03-Dec-2025 13:39:20 Finalising the build... simple 03-Dec-2025 13:39:20 Stopping timer. simple 03-Dec-2025 13:39:20 Build JB-GDB733-JOB1-3 completed. simple 03-Dec-2025 13:39:20 Running on server: post build plugin 'NCover Results Collector' simple 03-Dec-2025 13:39:20 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 03-Dec-2025 13:39:20 Running on server: post build plugin 'Clover Delta Calculator' simple 03-Dec-2025 13:39:20 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 03-Dec-2025 13:39:20 All post build plugins have finished simple 03-Dec-2025 13:39:20 Generating build results summary... simple 03-Dec-2025 13:39:21 Saving build results to disk... simple 03-Dec-2025 13:39:21 Logging substituted variables... simple 03-Dec-2025 13:39:21 Indexing build results... simple 03-Dec-2025 13:39:21 Finished building JB-GDB733-JOB1-3.