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JIRA Issues
This page lists the JIRA issues that have been linked to builds related to this plan, ordered by last built. This includes issues specified in commit messages, labels or comments for builds, as well as issues manually linked to builds.
| Type | Key | Summary | Status | Assignee | Fix versions | Related Builds | Last Built |
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JAL-1054 | jalview does not fetch from a URL containing a redirect | Closed | Ben Soares | 2.11.1_js, 2.11.4.0 | 2 related builds | Last built: 1 month ago |
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JAL-3018 | Check Ensembl REST change log, update version number | Open | James Procter | 1 related build | Last built: 1 month ago | |
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JAL-3064 | Hookup Jalview-JS clipboard to the browser clipboard | Open | Unassigned | 1 related build | Last built: 1 month ago | |
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JAL-3393 | DMG opened Finder window improvements | Reopened | Ben Soares | 2.11.1, 2.11.1.0 | 2 related builds | Last built: 1 month ago |
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JAL-3631 | Allow jalview auto-updates to download to and work from separate user-space directory | Closed | Ben Soares | 2.11.4.0 | 2 related builds | Last built: 1 month ago |
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JAL-4090 | Release 2.11.3.0 | Closed | James Procter | 2.11.3.0 | 4 related builds | Last built: 1 month ago |
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JAL-4100 | ncRNA and genes without product attributes are not imported from Genbank and EMBL format files | Open | Unassigned | 1 related build | Last built: 1 month ago | |
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JAL-4111 | Allow gradle build to create suffixed DEVELOP-... builds with channel appbase | Closed | Ben Soares | 2.11.3.0, 2.12.0 | 2 related builds | Last built: 1 month ago |
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JAL-4159 | PaSiMap inclusion | Closed | Thomas Morell | 2.11.4.0 | 4 related builds | Last built: 1 month ago |
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JAL-4328 | Some ensembl queries may not work reliably in 2.11.3.0, 2.11.4.0 | Closed | Ben Soares | 2.11.4.0 | 1 related build | Last built: 1 month ago |
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JAL-4349 | spurious output image .extensions cause jalview CLI execution to fail with Null Pointer Exception | Open | Unassigned | 2.11.4.2 | 2 related builds | Last built: 1 month ago |
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JAL-4386 | Calculate tree using secondary structure annotation | In Progress | Renia Correya | 2.11.4.0, 2.11.5.0 | 8 related builds | Last built: 1 month ago |
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JAL-4392 | Consensus secondary structure visualization for alignments | Closed | Renia Correya | 2.11.4.0 | 2 related builds | Last built: 1 month ago |
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JAL-4398 | The rendering of the text "Window" for the Window menu item is different to the other menus | Closed | Ben Soares | 2.11.4.0 | 1 related build | Last built: 1 month ago |
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JAL-4414 | HTTP errors are often interpreted to the user as a file format error - and FileNotFound errors are not propagated from Web or Local file import | In Progress | Unassigned | 2.11.4.0, 2.11.4.2 | 4 related builds | Last built: 1 month ago |
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JAL-4418 | Jalview 2.11.4.0 release | Being documented | James Procter | 2.11.4.0 | 5 related builds | Last built: 1 month ago |
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JAL-4420 | Jalview could recognise .features, .annotations and .newick files belonging to an alignment file when all dragged-and-dropped onto it | In Progress | Ben Soares | 2.11.4.0, 2.11.5.0 | 2 related builds | Last built: 1 month ago |
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JAL-4421 | Release installer DMG does not display the background image | Ready for testing | Ben Soares | 2.11.4, 2.12 | 3 related builds | Last built: 1 month ago |
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JAL-4425 | optionally hide consensus/annotations when no data is available | In Progress | James Procter | 2.11.4.0, 2.11.5.0 | 1 related build | Last built: 1 month ago |
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JAL-4427 | Annotation labels from protein disorder services include html tags from description | Closed | Renia Correya | 2.11.4.0 | 3 related builds | Last built: 1 month ago |
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JAL-4428 | integrate OSX codesigning scripts in jalview's repository | Reopened | James Procter | 2.11.5.0, 2.11.4.2 | 2 related builds | Last built: 1 month ago |
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JAL-4436 | Colour by secondary structure conservation | In Progress | Renia Correya | 2.11.5.0 | 1 related build | Last built: 1 month ago |
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JAL-4442 | can't quit Jalview 2.11.3.3 on Windows 11 (Terminal Server) | Closed | Ben Soares | 2.11.4.0 | 1 related build | Last built: 1 month ago |
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JAL-4446 | display eta for PaSiMap and allow it to be cancelled | Closed | James Procter | 2.11.4.0 | 2 related builds | Last built: 1 month ago |
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JAL-4449 | Ensembl sequence retrieval broken in 2.11.4.0rc2 | Closed | Ben Soares | 2.11.4.0 | 1 related build | Last built: 1 month ago |