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JIRA Issues

This page lists the JIRA issues that have been linked to builds related to this plan, ordered by last built. This includes issues specified in commit messages, labels or comments for builds, as well as issues manually linked to builds.

JIRA Issues (90 issues)
Type Key Summary Status Assignee Fix versions Related Builds Last Built
Improvement JAL-4555 Sort by a sequence's description Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Bug JAL-4557 New views for a CDS/Protein alignment have a 'cDNA PID' annotation row Closed James Procter 2.11.5.0, 2.12.0 5 related builds Last built: 4 months ago
Bug JAL-4562 CLI ignores additional annotation files specified via --annotations Closed Ben Soares 2.11.5.0 5 related builds Last built: 4 months ago
Bug JAL-4563 cannot import structure via URL on command line Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Bug JAL-4564 Can't specify URLs via --open= Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Bug JAL-4566 Jalview can fail to properly import and map a structure to a sequence via its N&W aligner Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Bug JAL-4568 Jalview freezes when trying to export PNG or EPS from Jmol via the File->Export menu Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Improvement JAL-4570 PAE tree always shown above the alignment view Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Improvement JAL-4583 Incorrect sequence count in source specific secondary structure consensus Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Bug JAL-4589 Empty row in annotation panel shown when alignment first imported Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Bug JAL-4590 String.isBlank() not available under Java 8 Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Bug JAL-4591 Web URLs that do not provide content or encoding headers are not readable Closed James Procter 2.11.5.0 5 related builds Last built: 4 months ago
Improvement JAL-4595 option to show or hide all 'temperature factor' like annotation tracks Open James Procter 5 related builds Last built: 4 months ago
Bug JAL-623 pdb structure imported from paste to alignment not loaded into new Jmol window Open James Procter 5 related builds Last built: 4 months ago
New Feature JAL-629 create sequence/structure associations and add associated data via command line Closed Ben Soares 2.11.3.0, 2.11.3, 2.11.5.0 7 related builds Last built: 4 months ago
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