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Build files
Jalview Builds - Gradle Develop Build - patch-JAL-4478_r212_initialpatch - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 27 May 2026, 5:36:00 PM | |
|
|
exceptions | 27 May 2026, 5:35:44 PM | |
|
|
gff | 27 May 2026, 5:35:59 PM | |
|
|
packed | 27 May 2026, 5:36:18 PM | |
|
|
vamsas | 27 May 2026, 5:35:36 PM | |
|
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vcf | 27 May 2026, 5:35:58 PM | |
| A3mFile.html | 58 kB | 27 May 2026, 5:35:38 PM | |
| A3mFile.js | 0.9 kB | 27 May 2026, 5:35:38 PM | |
| AMSAFile.html | 80 kB | 27 May 2026, 5:35:38 PM | |
| AMSAFile.js | 1 kB | 27 May 2026, 5:35:38 PM | |
| AlignFile.html | 716 kB | 27 May 2026, 5:35:38 PM | |
| AlignFile.js | 220 kB | 27 May 2026, 5:35:38 PM | |
| AlignmentFileReaderI.html | 35 kB | 27 May 2026, 5:35:37 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 27 May 2026, 5:35:37 PM | |
| AlignmentFileWriterI.html | 33 kB | 27 May 2026, 5:35:38 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 27 May 2026, 5:35:38 PM | |
| AlignmentProperties.html | 94 kB | 27 May 2026, 5:35:37 PM | |
| AlignmentProperties.js | 1 kB | 27 May 2026, 5:35:37 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 27 May 2026, 5:35:41 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 27 May 2026, 5:35:41 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_y7.html | 35 kB | 27 May 2026, 5:35:41 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_9k.html | 15 kB | 27 May 2026, 5:35:41 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_u3.html | 38 kB | 27 May 2026, 5:35:41 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_jl.html | 187 kB | 27 May 2026, 5:35:41 PM | |
| AnnotationExporterTest.html | 59 kB | 27 May 2026, 5:35:40 PM | |
| AnnotationExporterTest.js | 1 kB | 27 May 2026, 5:35:40 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_8l.html | 125 kB | 27 May 2026, 5:35:40 PM | |
| AnnotationFile.html | 1.03 MB | 27 May 2026, 5:35:38 PM | |
| AnnotationFile.js | 63 kB | 27 May 2026, 5:35:38 PM | |
| AnnotationFileIOTest.html | 241 kB | 27 May 2026, 5:35:41 PM | |
| AnnotationFileIOTest.js | 5 kB | 27 May 2026, 5:35:41 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_16l.html | 39 kB | 27 May 2026, 5:35:41 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_pd.html | 117 kB | 27 May 2026, 5:35:41 PM | |
| AnnotationFileIOTest_testCalcIdRestore_15.html | 116 kB | 27 May 2026, 5:35:41 PM | |
| AnnotationFileIOTest_testProviderRestore_qo.html | 126 kB | 27 May 2026, 5:35:41 PM | |
| AppletFormatAdapter.html | 667 kB | 27 May 2026, 5:35:37 PM | |
| AppletFormatAdapter.js | 123 kB | 27 May 2026, 5:35:37 PM | |
| BLCFile.html | 153 kB | 27 May 2026, 5:35:38 PM | |
| BLCFile.js | 3 kB | 27 May 2026, 5:35:38 PM | |
| BSMLFile.html | 135 kB | 27 May 2026, 5:35:38 PM | |
| BSMLFile.js | 2 kB | 27 May 2026, 5:35:38 PM | |
| BSMLFileTest.html | 54 kB | 27 May 2026, 5:35:39 PM | |
| BSMLFileTest.js | 1.0 kB | 27 May 2026, 5:35:39 PM | |
| BSMLFileTest_testParse_BSML_7i.html | 52 kB | 27 May 2026, 5:35:39 PM | |
| BackupFilenameFilter.html | 68 kB | 27 May 2026, 5:35:37 PM | |
| BackupFilenameFilter.js | 3 kB | 27 May 2026, 5:35:37 PM | |
| BackupFilenameParts.html | 129 kB | 27 May 2026, 5:35:38 PM | |
| BackupFilenameParts.js | 7 kB | 27 May 2026, 5:35:38 PM | |
| BackupFiles.html | 598 kB | 27 May 2026, 5:35:37 PM | |
| BackupFiles.js | 59 kB | 27 May 2026, 5:35:37 PM | |
| BackupFilesPresetEntry.html | 155 kB | 27 May 2026, 5:35:38 PM | |
| BackupFilesPresetEntry.js | 16 kB | 27 May 2026, 5:35:38 PM | |
| BackupFilesTest.html | 296 kB | 27 May 2026, 5:35:41 PM | |
| BackupFilesTest.js | 10 kB | 27 May 2026, 5:35:41 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_tp.html | 115 kB | 27 May 2026, 5:35:41 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_fm.html | 120 kB | 27 May 2026, 5:35:41 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_11r.html | 122 kB | 27 May 2026, 5:35:41 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_o6.html | 103 kB | 27 May 2026, 5:35:41 PM | |
| BackupFilesTest_noBackupsEnabledTest_17u.html | 122 kB | 27 May 2026, 5:35:41 PM | |
| BioJsHTMLOutput.html | 280 kB | 27 May 2026, 5:35:38 PM | |
| BioJsHTMLOutput.js | 74 kB | 27 May 2026, 5:35:38 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 27 May 2026, 5:35:39 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 27 May 2026, 5:35:39 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_8u.html | 8 kB | 27 May 2026, 5:35:39 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_in.html | 16 kB | 27 May 2026, 5:35:39 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_13y.html | 16 kB | 27 May 2026, 5:35:39 PM | |
| ClustalFile.html | 158 kB | 27 May 2026, 5:35:38 PM | |
| ClustalFile.js | 6 kB | 27 May 2026, 5:35:38 PM | |
| ClustalFileTest.html | 65 kB | 27 May 2026, 5:35:41 PM | |
| ClustalFileTest.js | 1 kB | 27 May 2026, 5:35:41 PM | |
| ClustalFileTest_testParse_noNumbering_9u.html | 14 kB | 27 May 2026, 5:35:41 PM | |
| ClustalFileTest_testParse_withNumbering_l5.html | 14 kB | 27 May 2026, 5:35:41 PM | |
| CountReader.html | 48 kB | 27 May 2026, 5:35:38 PM | |
| CountReader.js | 0.7 kB | 27 May 2026, 5:35:38 PM | |
| CrossRef2xmlTests.html | 327 kB | 27 May 2026, 5:35:39 PM | |
| CrossRef2xmlTests.js | 4 kB | 27 May 2026, 5:35:39 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_1b0.html | 209 kB | 27 May 2026, 5:35:39 PM | |
| DBRefFile.html | 43 kB | 27 May 2026, 5:35:38 PM | |
| DBRefFile.js | 0.6 kB | 27 May 2026, 5:35:38 PM | |
| DataSourceType.html | 255 kB | 27 May 2026, 5:35:37 PM | |
| DataSourceType.js | 23 kB | 27 May 2026, 5:35:37 PM | |
| EMBLLikeFlatFile.html | 429 kB | 27 May 2026, 5:35:38 PM | |
| EMBLLikeFlatFile.js | 17 kB | 27 May 2026, 5:35:38 PM | |
| EmblFlatFile.html | 134 kB | 27 May 2026, 5:35:37 PM | |
| EmblFlatFile.js | 4 kB | 27 May 2026, 5:35:37 PM | |
| EmblFlatFileTest.html | 229 kB | 27 May 2026, 5:35:41 PM | |
| EmblFlatFileTest.js | 5 kB | 27 May 2026, 5:35:41 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_rj.html | 17 kB | 27 May 2026, 5:35:41 PM | |
| EmblFlatFileTest_testParseToRNA_nm.html | 33 kB | 27 May 2026, 5:35:41 PM | |
| EmblFlatFileTest_testParse_bg.html | 57 kB | 27 May 2026, 5:35:41 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_1c1.html | 7 kB | 27 May 2026, 5:35:41 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_es.html | 20 kB | 27 May 2026, 5:35:41 PM | |
| EmblFlatFileTest_testRemoveQuotes_rx.html | 8 kB | 27 May 2026, 5:35:41 PM | |
| FastaFile.html | 422 kB | 27 May 2026, 5:35:38 PM | |
| FastaFile.js | 110 kB | 27 May 2026, 5:35:38 PM | |
| FeaturesFile.html | 765 kB | 27 May 2026, 5:35:38 PM | |
| FeaturesFile.js | 27 kB | 27 May 2026, 5:35:38 PM | |
| FeaturesFileTest.html | 522 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest.js | 13 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_readGff3File_8r.html | 47 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_simpleGff3FileClass_147.html | 35 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_simpleGff3FileLoader_16k.html | 118 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_gk.html | 35 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testOutputFeatureFilters_ze.html | 30 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testParseFilters_ba.html | 14 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testParse_32.html | 126 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_cg.html | 96 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_1hm.html | 121 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testParse_pureGff3_3o.html | 122 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testPrintGffFormat_1a9.html | 124 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_13t.html | 126 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testPrintJalviewFormat_7l.html | 102 kB | 27 May 2026, 5:35:40 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_y1.html | 120 kB | 27 May 2026, 5:35:40 PM | |
| FileFormat.html | 970 kB | 27 May 2026, 5:35:38 PM | |
| FileFormat.js | 93 kB | 27 May 2026, 5:35:38 PM | |
| FileFormatException.html | 58 kB | 27 May 2026, 5:35:38 PM | |
| FileFormatException.js | 2 kB | 27 May 2026, 5:35:38 PM | |
| FileFormatI.html | 47 kB | 27 May 2026, 5:35:37 PM | |
| FileFormatI.js | 0.7 kB | 27 May 2026, 5:35:37 PM | |
| FileFormats.html | 599 kB | 27 May 2026, 5:35:37 PM | |
| FileFormats.js | 84 kB | 27 May 2026, 5:35:37 PM | |
| FileFormatsTest.html | 137 kB | 27 May 2026, 5:35:40 PM | |
| FileFormatsTest.js | 3 kB | 27 May 2026, 5:35:40 PM | |
| FileFormatsTest_testDeregisterFileFormat_zg.html | 12 kB | 27 May 2026, 5:35:41 PM | |
| FileFormatsTest_testForName_164.html | 31 kB | 27 May 2026, 5:35:41 PM | |
| FileFormatsTest_testGetFormats_ax.html | 17 kB | 27 May 2026, 5:35:41 PM | |
| FileFormatsTest_testGetReadableFormats_jg.html | 10 kB | 27 May 2026, 5:35:41 PM | |
| FileFormatsTest_testGetWritableFormats_6.html | 10 kB | 27 May 2026, 5:35:41 PM | |
| FileFormatsTest_testIsIdentifiable_tn.html | 18 kB | 27 May 2026, 5:35:41 PM | |
| FileFormatsTest_testRegisterFileFormat_ap.html | 18 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester.html | 130 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester.js | 3 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester_testGzipIo_ec.html | 13 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester_testGziplocalFileIO_7h.html | 14 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester_testIsGzipInputStream_xo.html | 12 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester_testNonGzipURLIO_ur.html | 12 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester_testNonGziplocalFileIO_pu.html | 16 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester_testStarsInFasta1_pt.html | 11 kB | 27 May 2026, 5:35:41 PM | |
| FileIOTester_testStarsInFasta2_2b.html | 11 kB | 27 May 2026, 5:35:41 PM | |
| FileLoader.html | 615 kB | 27 May 2026, 5:35:38 PM | |
| FileLoader.js | 242 kB | 27 May 2026, 5:35:38 PM | |
| FileLoaderTest.html | 58 kB | 27 May 2026, 5:35:41 PM | |
| FileLoaderTest.js | 1 kB | 27 May 2026, 5:35:41 PM | |
| FileLoaderTest_testUpdateRecentlyOpened_1ke.html | 14 kB | 27 May 2026, 5:35:41 PM | |
| FileParse.html | 931 kB | 27 May 2026, 5:35:38 PM | |
| FileParse.js | 336 kB | 27 May 2026, 5:35:38 PM | |
| FormatAdapter.html | 446 kB | 27 May 2026, 5:35:37 PM | |
| FormatAdapter.js | 54 kB | 27 May 2026, 5:35:37 PM | |
| FormatAdapterTest.html | 118 kB | 27 May 2026, 5:35:39 PM | |
| FormatAdapterTest.js | 6 kB | 27 May 2026, 5:35:39 PM | |
| FormatAdapterTest_testRoundTrip_12c.html | 32 kB | 27 May 2026, 5:35:39 PM | |
| FormatAdapterTest_testRoundTrip_4k.html | 24 kB | 27 May 2026, 5:35:39 PM | |
| FormatAdapterTest_testRoundTrip_5g.html | 23 kB | 27 May 2026, 5:35:39 PM | |
| FormatAdapterTest_testRoundTrip_hf.html | 23 kB | 27 May 2026, 5:35:40 PM | |
| FormatAdapterTest_testRoundTrip_id.html | 23 kB | 27 May 2026, 5:35:40 PM | |
| FormatAdapterTest_testRoundTrip_ik.html | 23 kB | 27 May 2026, 5:35:40 PM | |
| FormatAdapterTest_testRoundTrip_j7.html | 22 kB | 27 May 2026, 5:35:40 PM | |
| FormatAdapterTest_testRoundTrip_ji.html | 21 kB | 27 May 2026, 5:35:40 PM | |
| FormatAdapterTest_testRoundTrip_qt.html | 23 kB | 27 May 2026, 5:35:39 PM | |
| FormatAdapterTest_testRoundTrip_xs.html | 22 kB | 27 May 2026, 5:35:40 PM | |
| FormatAdapterTest_testRoundTrip_y9.html | 35 kB | 27 May 2026, 5:35:40 PM | |
| FormatAdapterTest_testRoundTrip_zi.html | 22 kB | 27 May 2026, 5:35:39 PM | |
| GenBankFile.html | 121 kB | 27 May 2026, 5:35:37 PM | |
| GenBankFile.js | 2 kB | 27 May 2026, 5:35:37 PM | |
| GenBankFileTest.html | 133 kB | 27 May 2026, 5:35:39 PM | |
| GenBankFileTest.js | 3 kB | 27 May 2026, 5:35:39 PM | |
| GenBankFileTest_testParse_y2.html | 20 kB | 27 May 2026, 5:35:39 PM | |
| HMMFile.html | 406 kB | 27 May 2026, 5:35:38 PM | |
| HMMFile.js | 23 kB | 27 May 2026, 5:35:38 PM | |
| HMMFileTest.html | 318 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest.js | 7 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testAppendModelAsString_127.html | 10 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testAppendProperties_4h.html | 9 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testFillList_di.html | 8 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testParseAnnotations_ib.html | 17 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testParseHeaderLines_amino_af.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testParseHeaderLines_dna_ut.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testParseModel_13f.html | 15 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testParse_10e.html | 14 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testParse_minimalFile_q8.html | 18 kB | 27 May 2026, 5:35:40 PM | |
| HMMFileTest_testPrint_roundTrip_1gs.html | 16 kB | 27 May 2026, 5:35:40 PM | |
| HTMLOutput.html | 197 kB | 27 May 2026, 5:35:38 PM | |
| HTMLOutput.js | 3 kB | 27 May 2026, 5:35:38 PM | |
| HtmlFile.html | 132 kB | 27 May 2026, 5:35:38 PM | |
| HtmlFile.js | 2 kB | 27 May 2026, 5:35:38 PM | |
| HtmlFileTest.html | 39 kB | 27 May 2026, 5:35:41 PM | |
| HtmlFileTest.js | 0.6 kB | 27 May 2026, 5:35:41 PM | |
| HtmlSvgOutput.html | 173 kB | 27 May 2026, 5:35:38 PM | |
| HtmlSvgOutput.js | 2 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFile.html | 581 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFile.js | 230 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest.html | 149 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest.js | 5 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_144.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_17h.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_1ac.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_1gz.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_1jh.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_2i.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_51.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| IdentifyFileTest_testIdentify_71.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_73.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_ah.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_b4.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_cl.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_featureFile_hr.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_kf.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_mb.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_ns.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_p.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_rt.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_t.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_us.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_ws.html | 11 kB | 27 May 2026, 5:35:38 PM | |
| IdentifyFileTest_testIdentify_xa.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_mf.html | 8 kB | 27 May 2026, 5:35:38 PM | |
| InputStreamParser.html | 44 kB | 27 May 2026, 5:35:38 PM | |
| InputStreamParser.js | 0.6 kB | 27 May 2026, 5:35:38 PM | |
| IntKeyStringValueEntry.html | 40 kB | 27 May 2026, 5:35:38 PM | |
| IntKeyStringValueEntry.js | 0.6 kB | 27 May 2026, 5:35:38 PM | |
| JPredFile.html | 233 kB | 27 May 2026, 5:35:38 PM | |
| JPredFile.js | 6 kB | 27 May 2026, 5:35:38 PM | |
| JSONFile.html | 508 kB | 27 May 2026, 5:35:37 PM | |
| JSONFile.js | 14 kB | 27 May 2026, 5:35:37 PM | |
| JSONFileTest.html | 364 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest.js | 6 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_colorSchemeTest_66.html | 8 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_hiddenColsTest_18t.html | 10 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_hiddenSeqsTest_ts.html | 8 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_isShowSeqFeaturesSet_4y.html | 8 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_roundTripTest_1e6.html | 7 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_testAnnotationParsed_r6.html | 8 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_je.html | 119 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_testGrpParsed_19.html | 13 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_testGrpParsed_colourNone_sd.html | 127 kB | 27 May 2026, 5:35:39 PM | |
| JSONFileTest_testSeqParsed_1x.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| Jalview2xmlBase.html | 78 kB | 27 May 2026, 5:35:39 PM | |
| Jalview2xmlBase.js | 1 kB | 27 May 2026, 5:35:39 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 27 May 2026, 5:35:39 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 27 May 2026, 5:35:39 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_1h7.html | 119 kB | 27 May 2026, 5:35:39 PM | |
| JalviewFileChooser.html | 530 kB | 27 May 2026, 5:35:38 PM | |
| JalviewFileChooser.js | 9 kB | 27 May 2026, 5:35:38 PM | |
| JalviewFileChooserTest.html | 106 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest.js | 6 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_14w.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_15l.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1an.html | 11 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1du.html | 11 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1gh.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1ia.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1r.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_4g.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_58.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_7z.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ch.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fc.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_h7.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ha.html | 11 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_hz.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i6.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_kk.html | 12 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ri.html | 14 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_sc.html | 11 kB | 27 May 2026, 5:35:40 PM | |
| JalviewFileFilter.html | 145 kB | 27 May 2026, 5:35:38 PM | |
| JalviewFileFilter.js | 2 kB | 27 May 2026, 5:35:38 PM | |
| JalviewFileView.html | 115 kB | 27 May 2026, 5:35:38 PM | |
| JalviewFileView.js | 2 kB | 27 May 2026, 5:35:38 PM | |
| JalviewFileViewTest.html | 90 kB | 27 May 2026, 5:35:39 PM | |
| JalviewFileViewTest.js | 2 kB | 27 May 2026, 5:35:39 PM | |
| JalviewFileViewTest_testGetExtension_1f1.html | 8 kB | 27 May 2026, 5:35:39 PM | |
| JalviewFileViewTest_testGetImageIcon_181.html | 37 kB | 27 May 2026, 5:35:39 PM | |
| JalviewFileViewTest_testGetTypeDescription_1f8.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| JnetAnnotationMaker.html | 140 kB | 27 May 2026, 5:35:38 PM | |
| JnetAnnotationMaker.js | 5 kB | 27 May 2026, 5:35:38 PM | |
| MSFfile.html | 212 kB | 27 May 2026, 5:35:38 PM | |
| MSFfile.js | 5 kB | 27 May 2026, 5:35:38 PM | |
| ModellerDescription.html | 243 kB | 27 May 2026, 5:35:37 PM | |
| ModellerDescription.js | 3 kB | 27 May 2026, 5:35:37 PM | |
| NewickFile.html | 567 kB | 27 May 2026, 5:35:38 PM | |
| NewickFile.js | 45 kB | 27 May 2026, 5:35:38 PM | |
| NewickFileTests.html | 121 kB | 27 May 2026, 5:35:40 PM | |
| NewickFileTests.js | 3 kB | 27 May 2026, 5:35:40 PM | |
| NewickFileTests_testTreeIO_1e8.html | 61 kB | 27 May 2026, 5:35:40 PM | |
| NewickFileTests_testTreeIO_ql.html | 58 kB | 27 May 2026, 5:35:40 PM | |
| NewickFileTests_testTreeIO_xp.html | 53 kB | 27 May 2026, 5:35:40 PM | |
| PContactPredictionFile.html | 101 kB | 27 May 2026, 5:35:38 PM | |
| PContactPredictionFile.js | 1 kB | 27 May 2026, 5:35:38 PM | |
| PDBFeatureSettings.html | 105 kB | 27 May 2026, 5:35:38 PM | |
| PDBFeatureSettings.js | 6 kB | 27 May 2026, 5:35:38 PM | |
| PIRFile.html | 120 kB | 27 May 2026, 5:35:37 PM | |
| PIRFile.js | 2 kB | 27 May 2026, 5:35:37 PM | |
| PfamFile.html | 131 kB | 27 May 2026, 5:35:38 PM | |
| PfamFile.js | 8 kB | 27 May 2026, 5:35:38 PM | |
| PfamFormatInputTest.html | 56 kB | 27 May 2026, 5:35:41 PM | |
| PfamFormatInputTest.js | 1.0 kB | 27 May 2026, 5:35:41 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_p3.html | 19 kB | 27 May 2026, 5:35:41 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_19z.html | 19 kB | 27 May 2026, 5:35:41 PM | |
| PhylipFile.html | 176 kB | 27 May 2026, 5:35:37 PM | |
| PhylipFile.js | 6 kB | 27 May 2026, 5:35:37 PM | |
| PhylipFileTests.html | 128 kB | 27 May 2026, 5:35:39 PM | |
| PhylipFileTests.js | 3 kB | 27 May 2026, 5:35:39 PM | |
| PhylipFileTests_testInterleavedDataExtraction_d5.html | 19 kB | 27 May 2026, 5:35:39 PM | |
| PhylipFileTests_testInterleavedIO_my.html | 19 kB | 27 May 2026, 5:35:39 PM | |
| PhylipFileTests_testSequentialDataExtraction_12t.html | 42 kB | 27 May 2026, 5:35:39 PM | |
| PhylipFileTests_testSequentialIO_v0.html | 42 kB | 27 May 2026, 5:35:39 PM | |
| PileUpfile.html | 112 kB | 27 May 2026, 5:35:38 PM | |
| PileUpfile.js | 2 kB | 27 May 2026, 5:35:38 PM | |
| RNAMLfileTest.html | 66 kB | 27 May 2026, 5:35:41 PM | |
| RNAMLfileTest.js | 1 kB | 27 May 2026, 5:35:41 PM | |
| RNAMLfileTest_testRnamlSeqImport_x0.html | 55 kB | 27 May 2026, 5:35:41 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_dg.html | 72 kB | 27 May 2026, 5:35:41 PM | |
| RnamlFile.html | 145 kB | 27 May 2026, 5:35:38 PM | |
| RnamlFile.js | 3 kB | 27 May 2026, 5:35:38 PM | |
| ScoreMatrixFile.html | 268 kB | 27 May 2026, 5:35:38 PM | |
| ScoreMatrixFile.js | 25 kB | 27 May 2026, 5:35:38 PM | |
| ScoreMatrixFileTest.html | 334 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest.js | 7 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_9n.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_54.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_6m.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_gd.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_1em.html | 27 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_34.html | 12 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_1aw.html | 12 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_18j.html | 25 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_de.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_ig.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_14d.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_er.html | 22 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_fu.html | 25 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_jr.html | 17 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_1dv.html | 17 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_e5.html | 17 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_1f4.html | 17 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_1a1.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_jv.html | 11 kB | 27 May 2026, 5:35:39 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_jj.html | 16 kB | 27 May 2026, 5:35:39 PM | |
| SequenceAnnotationReport.html | 635 kB | 27 May 2026, 5:35:37 PM | |
| SequenceAnnotationReport.js | 40 kB | 27 May 2026, 5:35:37 PM | |
| SequenceAnnotationReportTest.html | 307 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_le.html | 10 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_1cp.html | 20 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_gl.html | 15 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_ku.html | 16 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_1gv.html | 19 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_vh.html | 16 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_1c8.html | 26 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_pl.html | 21 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_lh.html | 17 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_qp.html | 17 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_1ei.html | 27 kB | 27 May 2026, 5:35:40 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_14p.html | 38 kB | 27 May 2026, 5:35:40 PM | |
| SimpleBlastFile.html | 152 kB | 27 May 2026, 5:35:38 PM | |
| SimpleBlastFile.js | 2 kB | 27 May 2026, 5:35:38 PM | |
| StockholmFile.html | 717 kB | 27 May 2026, 5:35:37 PM | |
| StockholmFile.js | 63 kB | 27 May 2026, 5:35:37 PM | |
| StockholmFileTest.html | 515 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest.js | 20 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_m0.html | 63 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_dbrefOutput_12u.html | 40 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_descriptionLineOutput_1jv.html | 32 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_detectWussBrackets_5w.html | 23 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_17e.html | 43 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_pfamFileDataExtraction_vp.html | 75 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_pfamFileIO_9a.html | 80 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_rfamFileIO_15r.html | 72 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_1bt.html | 41 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_10l.html | 63 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_1hq.html | 27 kB | 27 May 2026, 5:35:39 PM | |
| StockholmFileTest_testAnnotationEquivalence_9r.html | 12 kB | 27 May 2026, 5:35:39 PM | |
| StructureFile.html | 433 kB | 27 May 2026, 5:35:38 PM | |
| StructureFile.js | 80 kB | 27 May 2026, 5:35:38 PM | |
| TCoffeeScoreFile.html | 362 kB | 27 May 2026, 5:35:37 PM | |
| TCoffeeScoreFile.js | 15 kB | 27 May 2026, 5:35:37 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest_testGetAsArray_1g1.html | 21 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest_testGetAsList_1g.html | 11 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_kl.html | 11 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_5y.html | 11 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest_testParse_18i.html | 11 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest_testReadBlock_1jd.html | 27 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest_testReadHeader_gp.html | 12 kB | 27 May 2026, 5:35:41 PM | |
| TCoffeeScoreFileTest_testWrongFile_1gy.html | 10 kB | 27 May 2026, 5:35:41 PM | |
| VamsasAppDatastore.html | 1.27 MB | 27 May 2026, 5:35:38 PM | |
| VamsasAppDatastore.js | 13 kB | 27 May 2026, 5:35:38 PM | |
| WSWUBlastClient.html | 177 kB | 27 May 2026, 5:35:37 PM | |
| WSWUBlastClient.js | 2 kB | 27 May 2026, 5:35:37 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 27 May 2026, 5:35:41 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 27 May 2026, 5:35:41 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_v6.html | 122 kB | 27 May 2026, 5:35:41 PM | |
| pkg-summary.html | 89 kB | 27 May 2026, 5:35:41 PM | |
| quick-wins.html | 33 kB | 27 May 2026, 5:35:41 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 27 May 2026, 5:35:25 PM | |
| test-AnnotationExporterTest.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 27 May 2026, 5:35:25 PM | |
| test-BSMLFileTest.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-BackupFilesTest.html | 11 kB | 27 May 2026, 5:35:25 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 27 May 2026, 5:35:25 PM | |
| test-ClustalFileTest.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-EmblFlatFileTest.html | 11 kB | 27 May 2026, 5:35:25 PM | |
| test-FeaturesFileTest.html | 15 kB | 27 May 2026, 5:35:25 PM | |
| test-FileFormatsTest.html | 12 kB | 27 May 2026, 5:35:25 PM | |
| test-FileIOTester.html | 12 kB | 27 May 2026, 5:35:25 PM | |
| test-FileLoaderTest.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-FormatAdapterTest.html | 14 kB | 27 May 2026, 5:35:25 PM | |
| test-GenBankFileTest.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-HMMFileTest.html | 13 kB | 27 May 2026, 5:35:25 PM | |
| test-HtmlFileTest.html | 8 kB | 27 May 2026, 5:35:25 PM | |
| test-IdentifyFileTest.html | 19 kB | 27 May 2026, 5:35:25 PM | |
| test-JSONFileTest.html | 13 kB | 27 May 2026, 5:35:25 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-JalviewFileChooserTest.html | 18 kB | 27 May 2026, 5:35:25 PM | |
| test-JalviewFileViewTest.html | 10 kB | 27 May 2026, 5:35:25 PM | |
| test-NewickFileTests.html | 10 kB | 27 May 2026, 5:35:25 PM | |
| test-PfamFormatInputTest.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-PhylipFileTests.html | 10 kB | 27 May 2026, 5:35:25 PM | |
| test-RNAMLfileTest.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 27 May 2026, 5:35:25 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 27 May 2026, 5:35:25 PM | |
| test-StockholmFileTest.html | 14 kB | 27 May 2026, 5:35:25 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 27 May 2026, 5:35:25 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 27 May 2026, 5:35:25 PM | |
| test-pkg-summary.html | 36 kB | 27 May 2026, 5:35:25 PM | |
| testsrc-pkg-summary.html | 48 kB | 27 May 2026, 5:35:41 PM | |
| top-risks.html | 34 kB | 27 May 2026, 5:35:41 PM |