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Build files
Jalview Builds - Gradle Develop Build - feature-JAL-4478_multimer_pae_import - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 01 Apr 2026, 1:22:31 PM | |
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exceptions | 01 Apr 2026, 1:22:18 PM | |
|
|
gff | 01 Apr 2026, 1:22:31 PM | |
|
|
packed | 01 Apr 2026, 1:22:48 PM | |
|
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vamsas | 01 Apr 2026, 1:22:12 PM | |
|
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vcf | 01 Apr 2026, 1:22:30 PM | |
| A3mFile.html | 58 kB | 01 Apr 2026, 1:22:13 PM | |
| A3mFile.js | 0.9 kB | 01 Apr 2026, 1:22:13 PM | |
| AMSAFile.html | 80 kB | 01 Apr 2026, 1:22:13 PM | |
| AMSAFile.js | 1 kB | 01 Apr 2026, 1:22:13 PM | |
| AlignFile.html | 707 kB | 01 Apr 2026, 1:22:13 PM | |
| AlignFile.js | 223 kB | 01 Apr 2026, 1:22:13 PM | |
| AlignmentFileReaderI.html | 36 kB | 01 Apr 2026, 1:22:13 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 01 Apr 2026, 1:22:13 PM | |
| AlignmentFileWriterI.html | 34 kB | 01 Apr 2026, 1:22:13 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 01 Apr 2026, 1:22:13 PM | |
| AlignmentProperties.html | 94 kB | 01 Apr 2026, 1:22:13 PM | |
| AlignmentProperties.js | 1 kB | 01 Apr 2026, 1:22:13 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_r9.html | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_43.html | 24 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_19v.html | 18 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_6h.html | 164 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotationExporterTest.html | 59 kB | 01 Apr 2026, 1:22:15 PM | |
| AnnotationExporterTest.js | 1 kB | 01 Apr 2026, 1:22:15 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_vp.html | 110 kB | 01 Apr 2026, 1:22:15 PM | |
| AnnotationFile.html | 1.01 MB | 01 Apr 2026, 1:22:13 PM | |
| AnnotationFile.js | 59 kB | 01 Apr 2026, 1:22:13 PM | |
| AnnotationFileIOTest.html | 241 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotationFileIOTest.js | 5 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_m2.html | 40 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_gm.html | 111 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotationFileIOTest_testCalcIdRestore_2m.html | 102 kB | 01 Apr 2026, 1:22:16 PM | |
| AnnotationFileIOTest_testProviderRestore_194.html | 102 kB | 01 Apr 2026, 1:22:16 PM | |
| AppletFormatAdapter.html | 680 kB | 01 Apr 2026, 1:22:13 PM | |
| AppletFormatAdapter.js | 129 kB | 01 Apr 2026, 1:22:13 PM | |
| BLCFile.html | 153 kB | 01 Apr 2026, 1:22:13 PM | |
| BLCFile.js | 3 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFilenameFilter.html | 68 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFilenameFilter.js | 3 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFilenameParts.html | 129 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFilenameParts.js | 7 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFiles.html | 600 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFiles.js | 58 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFilesPresetEntry.html | 155 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFilesPresetEntry.js | 15 kB | 01 Apr 2026, 1:22:13 PM | |
| BackupFilesTest.html | 296 kB | 01 Apr 2026, 1:22:16 PM | |
| BackupFilesTest.js | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_l4.html | 109 kB | 01 Apr 2026, 1:22:16 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_3p.html | 109 kB | 01 Apr 2026, 1:22:16 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_if.html | 110 kB | 01 Apr 2026, 1:22:16 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_75.html | 93 kB | 01 Apr 2026, 1:22:16 PM | |
| BackupFilesTest_noBackupsEnabledTest_m3.html | 109 kB | 01 Apr 2026, 1:22:16 PM | |
| BioJsHTMLOutput.html | 280 kB | 01 Apr 2026, 1:22:13 PM | |
| BioJsHTMLOutput.js | 73 kB | 01 Apr 2026, 1:22:13 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 01 Apr 2026, 1:22:14 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 01 Apr 2026, 1:22:14 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_h8.html | 8 kB | 01 Apr 2026, 1:22:14 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_ai.html | 8 kB | 01 Apr 2026, 1:22:14 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_17k.html | 22 kB | 01 Apr 2026, 1:22:14 PM | |
| ClustalFile.html | 158 kB | 01 Apr 2026, 1:22:13 PM | |
| ClustalFile.js | 6 kB | 01 Apr 2026, 1:22:13 PM | |
| ClustalFileTest.html | 65 kB | 01 Apr 2026, 1:22:16 PM | |
| ClustalFileTest.js | 1 kB | 01 Apr 2026, 1:22:16 PM | |
| ClustalFileTest_testParse_noNumbering_7g.html | 14 kB | 01 Apr 2026, 1:22:16 PM | |
| ClustalFileTest_testParse_withNumbering_rl.html | 14 kB | 01 Apr 2026, 1:22:16 PM | |
| CrossRef2xmlTests.html | 327 kB | 01 Apr 2026, 1:22:14 PM | |
| CrossRef2xmlTests.js | 4 kB | 01 Apr 2026, 1:22:14 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_13p.html | 175 kB | 01 Apr 2026, 1:22:14 PM | |
| DBRefFile.html | 43 kB | 01 Apr 2026, 1:22:13 PM | |
| DBRefFile.js | 0.6 kB | 01 Apr 2026, 1:22:13 PM | |
| DataSourceType.html | 269 kB | 01 Apr 2026, 1:22:13 PM | |
| DataSourceType.js | 25 kB | 01 Apr 2026, 1:22:13 PM | |
| EMBLLikeFlatFile.html | 429 kB | 01 Apr 2026, 1:22:13 PM | |
| EMBLLikeFlatFile.js | 17 kB | 01 Apr 2026, 1:22:13 PM | |
| EmblFlatFile.html | 134 kB | 01 Apr 2026, 1:22:13 PM | |
| EmblFlatFile.js | 4 kB | 01 Apr 2026, 1:22:13 PM | |
| EmblFlatFileTest.html | 229 kB | 01 Apr 2026, 1:22:16 PM | |
| EmblFlatFileTest.js | 5 kB | 01 Apr 2026, 1:22:16 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_zo.html | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| EmblFlatFileTest_testParseToRNA_uf.html | 21 kB | 01 Apr 2026, 1:22:16 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_1di.html | 7 kB | 01 Apr 2026, 1:22:16 PM | |
| EmblFlatFileTest_testParse_e5.html | 21 kB | 01 Apr 2026, 1:22:16 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_qe.html | 19 kB | 01 Apr 2026, 1:22:16 PM | |
| EmblFlatFileTest_testRemoveQuotes_44.html | 8 kB | 01 Apr 2026, 1:22:16 PM | |
| FastaFile.html | 428 kB | 01 Apr 2026, 1:22:13 PM | |
| FastaFile.js | 111 kB | 01 Apr 2026, 1:22:13 PM | |
| FeaturesFile.html | 765 kB | 01 Apr 2026, 1:22:13 PM | |
| FeaturesFile.js | 27 kB | 01 Apr 2026, 1:22:13 PM | |
| FeaturesFileTest.html | 522 kB | 01 Apr 2026, 1:22:15 PM | |
| FeaturesFileTest.js | 13 kB | 01 Apr 2026, 1:22:15 PM | |
| FeaturesFileTest_readGff3File_33.html | 36 kB | 01 Apr 2026, 1:22:15 PM | |
| FeaturesFileTest_simpleGff3FileClass_ar.html | 34 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_simpleGff3FileLoader_18c.html | 118 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_1dj.html | 53 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testOutputFeatureFilters_16d.html | 21 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testParseFilters_158.html | 14 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_ix.html | 108 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_2k.html | 115 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testParse_nj.html | 95 kB | 01 Apr 2026, 1:22:15 PM | |
| FeaturesFileTest_testParse_pureGff3_2b.html | 103 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testPrintGffFormat_1b6.html | 97 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_6t.html | 106 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testPrintJalviewFormat_wf.html | 109 kB | 01 Apr 2026, 1:22:16 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_4n.html | 105 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormat.html | 814 kB | 01 Apr 2026, 1:22:13 PM | |
| FileFormat.js | 80 kB | 01 Apr 2026, 1:22:13 PM | |
| FileFormatException.html | 58 kB | 01 Apr 2026, 1:22:13 PM | |
| FileFormatException.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| FileFormatI.html | 46 kB | 01 Apr 2026, 1:22:13 PM | |
| FileFormatI.js | 0.7 kB | 01 Apr 2026, 1:22:13 PM | |
| FileFormats.html | 450 kB | 01 Apr 2026, 1:22:13 PM | |
| FileFormats.js | 70 kB | 01 Apr 2026, 1:22:13 PM | |
| FileFormatsTest.html | 137 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormatsTest.js | 3 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormatsTest_testDeregisterFileFormat_vk.html | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormatsTest_testForName_r4.html | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormatsTest_testGetFormats_mm.html | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormatsTest_testGetReadableFormats_1dl.html | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormatsTest_testGetWritableFormats_u4.html | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormatsTest_testIsIdentifiable_ak.html | 9 kB | 01 Apr 2026, 1:22:16 PM | |
| FileFormatsTest_testRegisterFileFormat_s5.html | 10 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester.html | 130 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester.js | 3 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester_testGzipIo_jd.html | 12 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester_testGziplocalFileIO_19a.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester_testIsGzipInputStream_qn.html | 12 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester_testNonGzipURLIO_si.html | 12 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester_testNonGziplocalFileIO_io.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester_testStarsInFasta1_oe.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
| FileIOTester_testStarsInFasta2_ru.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
| FileLoader.html | 601 kB | 01 Apr 2026, 1:22:13 PM | |
| FileLoader.js | 249 kB | 01 Apr 2026, 1:22:13 PM | |
| FileLoaderTest.html | 37 kB | 01 Apr 2026, 1:22:16 PM | |
| FileLoaderTest.js | 0.6 kB | 01 Apr 2026, 1:22:16 PM | |
| FileParse.html | 927 kB | 01 Apr 2026, 1:22:13 PM | |
| FileParse.js | 339 kB | 01 Apr 2026, 1:22:13 PM | |
| FormatAdapter.html | 458 kB | 01 Apr 2026, 1:22:13 PM | |
| FormatAdapter.js | 56 kB | 01 Apr 2026, 1:22:13 PM | |
| FormatAdapterTest.html | 112 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest.js | 5 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_10o.html | 23 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_16k.html | 31 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_189.html | 21 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_1ch.html | 22 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_1e8.html | 21 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_bu.html | 42 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_ho.html | 21 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_rp.html | 24 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_se.html | 21 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_tu.html | 23 kB | 01 Apr 2026, 1:22:15 PM | |
| FormatAdapterTest_testRoundTrip_vh.html | 23 kB | 01 Apr 2026, 1:22:15 PM | |
| GenBankFile.html | 121 kB | 01 Apr 2026, 1:22:13 PM | |
| GenBankFile.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| GenBankFileTest.html | 133 kB | 01 Apr 2026, 1:22:15 PM | |
| GenBankFileTest.js | 3 kB | 01 Apr 2026, 1:22:15 PM | |
| GenBankFileTest_testParse_1bl.html | 19 kB | 01 Apr 2026, 1:22:15 PM | |
| HTMLOutput.html | 197 kB | 01 Apr 2026, 1:22:13 PM | |
| HTMLOutput.js | 3 kB | 01 Apr 2026, 1:22:13 PM | |
| HtmlFile.html | 132 kB | 01 Apr 2026, 1:22:13 PM | |
| HtmlFile.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| HtmlFileTest.html | 39 kB | 01 Apr 2026, 1:22:16 PM | |
| HtmlFileTest.js | 0.6 kB | 01 Apr 2026, 1:22:16 PM | |
| HtmlSvgOutput.html | 173 kB | 01 Apr 2026, 1:22:13 PM | |
| HtmlSvgOutput.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFile.html | 590 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFile.js | 236 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFileTest.html | 149 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFileTest.js | 5 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFileTest_testIdentify_11y.html | 12 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_196.html | 11 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFileTest_testIdentify_1a1.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_1bn.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_1w.html | 11 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFileTest_testIdentify_5n.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_69.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_6a.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_9i.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_e2.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_ey.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_featureFile_8z.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_i9.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_j3.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_js.html | 11 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFileTest_testIdentify_kn.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_oj.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_pg.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_t2.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_yi.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_yp.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| IdentifyFileTest_testIdentify_zy.html | 11 kB | 01 Apr 2026, 1:22:13 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_17t.html | 8 kB | 01 Apr 2026, 1:22:14 PM | |
| InputStreamParser.html | 44 kB | 01 Apr 2026, 1:22:13 PM | |
| InputStreamParser.js | 0.6 kB | 01 Apr 2026, 1:22:13 PM | |
| IntKeyStringValueEntry.html | 44 kB | 01 Apr 2026, 1:22:13 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 01 Apr 2026, 1:22:13 PM | |
| JPredFile.html | 220 kB | 01 Apr 2026, 1:22:13 PM | |
| JPredFile.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| JSONFile.html | 508 kB | 01 Apr 2026, 1:22:13 PM | |
| JSONFile.js | 14 kB | 01 Apr 2026, 1:22:13 PM | |
| JSONFileTest.html | 364 kB | 01 Apr 2026, 1:22:14 PM | |
| JSONFileTest.js | 6 kB | 01 Apr 2026, 1:22:14 PM | |
| JSONFileTest_colorSchemeTest_5o.html | 8 kB | 01 Apr 2026, 1:22:15 PM | |
| JSONFileTest_hiddenColsTest_12a.html | 10 kB | 01 Apr 2026, 1:22:14 PM | |
| JSONFileTest_hiddenSeqsTest_122.html | 8 kB | 01 Apr 2026, 1:22:14 PM | |
| JSONFileTest_isShowSeqFeaturesSet_w.html | 8 kB | 01 Apr 2026, 1:22:15 PM | |
| JSONFileTest_roundTripTest_xk.html | 7 kB | 01 Apr 2026, 1:22:14 PM | |
| JSONFileTest_testAnnotationParsed_ua.html | 8 kB | 01 Apr 2026, 1:22:15 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_70.html | 105 kB | 01 Apr 2026, 1:22:15 PM | |
| JSONFileTest_testGrpParsed_colourNone_y0.html | 124 kB | 01 Apr 2026, 1:22:15 PM | |
| JSONFileTest_testGrpParsed_jn.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JSONFileTest_testSeqParsed_7.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| Jalview2xmlBase.html | 78 kB | 01 Apr 2026, 1:22:15 PM | |
| Jalview2xmlBase.js | 1 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_13v.html | 131 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooser.html | 657 kB | 01 Apr 2026, 1:22:13 PM | |
| JalviewFileChooser.js | 140 kB | 01 Apr 2026, 1:22:13 PM | |
| JalviewFileChooserTest.html | 118 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest.js | 8 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_116.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_15y.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_19c.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1b5.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1b9.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_24.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_28.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_45.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5d.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_b9.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_cp.html | 15 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_cw.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_d6.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_dm.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_eu.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fb.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fe.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fh.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_im.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_nh.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_nm.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_o9.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ot.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_q4.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_r5.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_rn.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_v7.html | 11 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_xb.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileFilter.html | 248 kB | 01 Apr 2026, 1:22:13 PM | |
| JalviewFileFilter.js | 65 kB | 01 Apr 2026, 1:22:13 PM | |
| JalviewFileView.html | 115 kB | 01 Apr 2026, 1:22:13 PM | |
| JalviewFileView.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| JalviewFileViewTest.html | 90 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileViewTest.js | 2 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileViewTest_testGetExtension_uu.html | 8 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileViewTest_testGetImageIcon_6p.html | 9 kB | 01 Apr 2026, 1:22:15 PM | |
| JalviewFileViewTest_testGetTypeDescription_1bk.html | 10 kB | 01 Apr 2026, 1:22:15 PM | |
| JnetAnnotationMaker.html | 126 kB | 01 Apr 2026, 1:22:13 PM | |
| JnetAnnotationMaker.js | 1 kB | 01 Apr 2026, 1:22:13 PM | |
| MSFfile.html | 212 kB | 01 Apr 2026, 1:22:13 PM | |
| MSFfile.js | 5 kB | 01 Apr 2026, 1:22:13 PM | |
| ModellerDescription.html | 236 kB | 01 Apr 2026, 1:22:13 PM | |
| ModellerDescription.js | 3 kB | 01 Apr 2026, 1:22:13 PM | |
| NewickFile.html | 529 kB | 01 Apr 2026, 1:22:13 PM | |
| NewickFile.js | 38 kB | 01 Apr 2026, 1:22:13 PM | |
| NewickFileTests.html | 121 kB | 01 Apr 2026, 1:22:15 PM | |
| NewickFileTests.js | 3 kB | 01 Apr 2026, 1:22:15 PM | |
| NewickFileTests_testTreeIO_hq.html | 33 kB | 01 Apr 2026, 1:22:15 PM | |
| NewickFileTests_testTreeIO_kt.html | 35 kB | 01 Apr 2026, 1:22:15 PM | |
| NewickFileTests_testTreeIO_yy.html | 34 kB | 01 Apr 2026, 1:22:15 PM | |
| PContactPredictionFile.html | 101 kB | 01 Apr 2026, 1:22:13 PM | |
| PContactPredictionFile.js | 1 kB | 01 Apr 2026, 1:22:13 PM | |
| PDBFeatureSettings.html | 121 kB | 01 Apr 2026, 1:22:13 PM | |
| PDBFeatureSettings.js | 8 kB | 01 Apr 2026, 1:22:13 PM | |
| PIRFile.html | 120 kB | 01 Apr 2026, 1:22:13 PM | |
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| PfamFile.html | 131 kB | 01 Apr 2026, 1:22:13 PM | |
| PfamFile.js | 8 kB | 01 Apr 2026, 1:22:13 PM | |
| PfamFormatInputTest.html | 56 kB | 01 Apr 2026, 1:22:16 PM | |
| PfamFormatInputTest.js | 1 kB | 01 Apr 2026, 1:22:16 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_1dc.html | 21 kB | 01 Apr 2026, 1:22:16 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_we.html | 21 kB | 01 Apr 2026, 1:22:16 PM | |
| PhylipFile.html | 176 kB | 01 Apr 2026, 1:22:13 PM | |
| PhylipFile.js | 6 kB | 01 Apr 2026, 1:22:13 PM | |
| PhylipFileTests.html | 128 kB | 01 Apr 2026, 1:22:14 PM | |
| PhylipFileTests.js | 3 kB | 01 Apr 2026, 1:22:14 PM | |
| PhylipFileTests_testInterleavedDataExtraction_1cb.html | 20 kB | 01 Apr 2026, 1:22:14 PM | |
| PhylipFileTests_testInterleavedIO_bf.html | 20 kB | 01 Apr 2026, 1:22:14 PM | |
| PhylipFileTests_testSequentialDataExtraction_ux.html | 20 kB | 01 Apr 2026, 1:22:14 PM | |
| PhylipFileTests_testSequentialIO_dr.html | 20 kB | 01 Apr 2026, 1:22:14 PM | |
| PileUpfile.html | 112 kB | 01 Apr 2026, 1:22:13 PM | |
| PileUpfile.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| RNAMLfileTest.html | 66 kB | 01 Apr 2026, 1:22:16 PM | |
| RNAMLfileTest.js | 1 kB | 01 Apr 2026, 1:22:16 PM | |
| RNAMLfileTest_testRnamlSeqImport_15c.html | 57 kB | 01 Apr 2026, 1:22:16 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_81.html | 61 kB | 01 Apr 2026, 1:22:16 PM | |
| RnamlFile.html | 145 kB | 01 Apr 2026, 1:22:13 PM | |
| RnamlFile.js | 3 kB | 01 Apr 2026, 1:22:13 PM | |
| ScoreMatrixFile.html | 266 kB | 01 Apr 2026, 1:22:13 PM | |
| ScoreMatrixFile.js | 24 kB | 01 Apr 2026, 1:22:13 PM | |
| ScoreMatrixFileTest.html | 334 kB | 01 Apr 2026, 1:22:14 PM | |
| ScoreMatrixFileTest.js | 7 kB | 01 Apr 2026, 1:22:14 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_7l.html | 48 kB | 01 Apr 2026, 1:22:14 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_qh.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_t3.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_z8.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_13q.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_s4.html | 11 kB | 01 Apr 2026, 1:22:14 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_16z.html | 15 kB | 01 Apr 2026, 1:22:14 PM | |
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| ScoreMatrixFileTest_testParse_ncbiFormat_sp.html | 16 kB | 01 Apr 2026, 1:22:14 PM | |
| SequenceAnnotationReport.html | 631 kB | 01 Apr 2026, 1:22:13 PM | |
| SequenceAnnotationReport.js | 41 kB | 01 Apr 2026, 1:22:13 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 01 Apr 2026, 1:22:15 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 01 Apr 2026, 1:22:15 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_ao.html | 23 kB | 01 Apr 2026, 1:22:15 PM | |
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| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_4y.html | 9 kB | 01 Apr 2026, 1:22:15 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_uz.html | 17 kB | 01 Apr 2026, 1:22:15 PM | |
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| SequenceAnnotationReportTest_testAppendFeature_stripHtml_8t.html | 25 kB | 01 Apr 2026, 1:22:15 PM | |
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| SequenceAnnotationReportTest_testAppendFeature_withScore_lf.html | 15 kB | 01 Apr 2026, 1:22:15 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_cb.html | 22 kB | 01 Apr 2026, 1:22:15 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_tx.html | 28 kB | 01 Apr 2026, 1:22:15 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_x.html | 26 kB | 01 Apr 2026, 1:22:15 PM | |
| SimpleBlastFile.html | 152 kB | 01 Apr 2026, 1:22:13 PM | |
| SimpleBlastFile.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| StockholmFile.html | 675 kB | 01 Apr 2026, 1:22:13 PM | |
| StockholmFile.js | 60 kB | 01 Apr 2026, 1:22:13 PM | |
| StockholmFileTest.html | 515 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest.js | 20 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_td.html | 55 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_dbrefOutput_1dm.html | 41 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_descriptionLineOutput_73.html | 50 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_detectWussBrackets_nw.html | 7 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_k0.html | 49 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_pfamFileDataExtraction_gg.html | 55 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_pfamFileIO_du.html | 54 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_rfamFileIO_133.html | 52 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_qg.html | 50 kB | 01 Apr 2026, 1:22:14 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_66.html | 46 kB | 01 Apr 2026, 1:22:14 PM | |
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| StockholmFileTest_testAnnotationEquivalence_16l.html | 13 kB | 01 Apr 2026, 1:22:14 PM | |
| StructureFile.html | 451 kB | 01 Apr 2026, 1:22:13 PM | |
| StructureFile.js | 99 kB | 01 Apr 2026, 1:22:13 PM | |
| TCoffeeScoreFile.html | 362 kB | 01 Apr 2026, 1:22:13 PM | |
| TCoffeeScoreFile.js | 15 kB | 01 Apr 2026, 1:22:13 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 01 Apr 2026, 1:22:16 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 01 Apr 2026, 1:22:16 PM | |
| TCoffeeScoreFileTest_testGetAsArray_1q.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
| TCoffeeScoreFileTest_testGetAsList_u8.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_16y.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_yg.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
| TCoffeeScoreFileTest_testParse_h2.html | 11 kB | 01 Apr 2026, 1:22:16 PM | |
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| TCoffeeScoreFileTest_testWrongFile_41.html | 10 kB | 01 Apr 2026, 1:22:16 PM | |
| VamsasAppDatastore.html | 1.26 MB | 01 Apr 2026, 1:22:13 PM | |
| VamsasAppDatastore.js | 13 kB | 01 Apr 2026, 1:22:13 PM | |
| WSWUBlastClient.html | 177 kB | 01 Apr 2026, 1:22:13 PM | |
| WSWUBlastClient.js | 2 kB | 01 Apr 2026, 1:22:13 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 01 Apr 2026, 1:22:16 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 01 Apr 2026, 1:22:16 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_4h.html | 100 kB | 01 Apr 2026, 1:22:16 PM | |
| pkg-summary.html | 86 kB | 01 Apr 2026, 1:22:16 PM | |
| quick-wins.html | 32 kB | 01 Apr 2026, 1:22:16 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 01 Apr 2026, 1:22:01 PM | |
| test-AnnotationExporterTest.html | 9 kB | 01 Apr 2026, 1:22:01 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 01 Apr 2026, 1:22:01 PM | |
| test-BackupFilesTest.html | 11 kB | 01 Apr 2026, 1:22:01 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 01 Apr 2026, 1:22:01 PM | |
| test-ClustalFileTest.html | 9 kB | 01 Apr 2026, 1:22:01 PM | |
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| test-EmblFlatFileTest.html | 11 kB | 01 Apr 2026, 1:22:01 PM | |
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| test-RNAMLfileTest.html | 9 kB | 01 Apr 2026, 1:22:01 PM | |
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| test-WindowsFileLoadAndSaveTest.html | 9 kB | 01 Apr 2026, 1:22:01 PM | |
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| top-risks.html | 33 kB | 01 Apr 2026, 1:22:16 PM |