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Build files
Jalview Builds - Gradle Develop Build - patch-JAL-4658_quick_patch_for_clustering_histograms_of_counts - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 28 May 2026, 3:49:46 PM | |
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exceptions | 28 May 2026, 3:49:30 PM | |
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gff | 28 May 2026, 3:49:45 PM | |
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packed | 28 May 2026, 3:50:05 PM | |
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vamsas | 28 May 2026, 3:49:22 PM | |
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vcf | 28 May 2026, 3:49:44 PM | |
| A3mFile.html | 58 kB | 28 May 2026, 3:49:24 PM | |
| A3mFile.js | 1.0 kB | 28 May 2026, 3:49:24 PM | |
| AMSAFile.html | 80 kB | 28 May 2026, 3:49:23 PM | |
| AMSAFile.js | 1 kB | 28 May 2026, 3:49:23 PM | |
| AlignFile.html | 720 kB | 28 May 2026, 3:49:23 PM | |
| AlignFile.js | 221 kB | 28 May 2026, 3:49:23 PM | |
| AlignmentFileReaderI.html | 35 kB | 28 May 2026, 3:49:23 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 28 May 2026, 3:49:23 PM | |
| AlignmentFileWriterI.html | 33 kB | 28 May 2026, 3:49:23 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 28 May 2026, 3:49:23 PM | |
| AlignmentProperties.html | 94 kB | 28 May 2026, 3:49:23 PM | |
| AlignmentProperties.js | 1 kB | 28 May 2026, 3:49:23 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 28 May 2026, 3:49:27 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 28 May 2026, 3:49:27 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_1hx.html | 10 kB | 28 May 2026, 3:49:27 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_l3.html | 8 kB | 28 May 2026, 3:49:27 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_vd.html | 25 kB | 28 May 2026, 3:49:27 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_ea.html | 187 kB | 28 May 2026, 3:49:27 PM | |
| AnnotationExporterTest.html | 59 kB | 28 May 2026, 3:49:25 PM | |
| AnnotationExporterTest.js | 1 kB | 28 May 2026, 3:49:25 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_17a.html | 132 kB | 28 May 2026, 3:49:25 PM | |
| AnnotationFile.html | 1.03 MB | 28 May 2026, 3:49:23 PM | |
| AnnotationFile.js | 63 kB | 28 May 2026, 3:49:23 PM | |
| AnnotationFileIOTest.html | 241 kB | 28 May 2026, 3:49:27 PM | |
| AnnotationFileIOTest.js | 5 kB | 28 May 2026, 3:49:27 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_149.html | 39 kB | 28 May 2026, 3:49:27 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_3p.html | 110 kB | 28 May 2026, 3:49:27 PM | |
| AnnotationFileIOTest_testCalcIdRestore_1az.html | 118 kB | 28 May 2026, 3:49:27 PM | |
| AnnotationFileIOTest_testProviderRestore_st.html | 117 kB | 28 May 2026, 3:49:27 PM | |
| AppletFormatAdapter.html | 669 kB | 28 May 2026, 3:49:23 PM | |
| AppletFormatAdapter.js | 124 kB | 28 May 2026, 3:49:23 PM | |
| BLCFile.html | 153 kB | 28 May 2026, 3:49:24 PM | |
| BLCFile.js | 3 kB | 28 May 2026, 3:49:24 PM | |
| BSMLFile.html | 135 kB | 28 May 2026, 3:49:23 PM | |
| BSMLFile.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| BSMLFileTest.html | 54 kB | 28 May 2026, 3:49:24 PM | |
| BSMLFileTest.js | 1.0 kB | 28 May 2026, 3:49:24 PM | |
| BSMLFileTest_testParse_BSML_ai.html | 52 kB | 28 May 2026, 3:49:24 PM | |
| BackupFilenameFilter.html | 68 kB | 28 May 2026, 3:49:23 PM | |
| BackupFilenameFilter.js | 4 kB | 28 May 2026, 3:49:23 PM | |
| BackupFilenameParts.html | 129 kB | 28 May 2026, 3:49:23 PM | |
| BackupFilenameParts.js | 7 kB | 28 May 2026, 3:49:23 PM | |
| BackupFiles.html | 598 kB | 28 May 2026, 3:49:23 PM | |
| BackupFiles.js | 58 kB | 28 May 2026, 3:49:23 PM | |
| BackupFilesPresetEntry.html | 155 kB | 28 May 2026, 3:49:23 PM | |
| BackupFilesPresetEntry.js | 16 kB | 28 May 2026, 3:49:23 PM | |
| BackupFilesTest.html | 296 kB | 28 May 2026, 3:49:27 PM | |
| BackupFilesTest.js | 10 kB | 28 May 2026, 3:49:27 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_1g0.html | 116 kB | 28 May 2026, 3:49:27 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_yp.html | 129 kB | 28 May 2026, 3:49:27 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_1da.html | 122 kB | 28 May 2026, 3:49:27 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_1eu.html | 129 kB | 28 May 2026, 3:49:27 PM | |
| BackupFilesTest_noBackupsEnabledTest_17c.html | 108 kB | 28 May 2026, 3:49:27 PM | |
| BioJsHTMLOutput.html | 280 kB | 28 May 2026, 3:49:24 PM | |
| BioJsHTMLOutput.js | 73 kB | 28 May 2026, 3:49:24 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 28 May 2026, 3:49:24 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 28 May 2026, 3:49:24 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_14v.html | 8 kB | 28 May 2026, 3:49:24 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_ux.html | 8 kB | 28 May 2026, 3:49:24 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_o0.html | 42 kB | 28 May 2026, 3:49:24 PM | |
| ClustalFile.html | 158 kB | 28 May 2026, 3:49:24 PM | |
| ClustalFile.js | 6 kB | 28 May 2026, 3:49:24 PM | |
| ClustalFileTest.html | 65 kB | 28 May 2026, 3:49:26 PM | |
| ClustalFileTest.js | 1 kB | 28 May 2026, 3:49:26 PM | |
| ClustalFileTest_testParse_noNumbering_i2.html | 14 kB | 28 May 2026, 3:49:27 PM | |
| ClustalFileTest_testParse_withNumbering_wn.html | 14 kB | 28 May 2026, 3:49:27 PM | |
| CountReader.html | 48 kB | 28 May 2026, 3:49:23 PM | |
| CountReader.js | 0.7 kB | 28 May 2026, 3:49:23 PM | |
| CrossRef2xmlTests.html | 327 kB | 28 May 2026, 3:49:24 PM | |
| CrossRef2xmlTests.js | 4 kB | 28 May 2026, 3:49:24 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_rg.html | 218 kB | 28 May 2026, 3:49:24 PM | |
| DBRefFile.html | 43 kB | 28 May 2026, 3:49:24 PM | |
| DBRefFile.js | 0.6 kB | 28 May 2026, 3:49:24 PM | |
| DataSourceType.html | 255 kB | 28 May 2026, 3:49:23 PM | |
| DataSourceType.js | 23 kB | 28 May 2026, 3:49:23 PM | |
| EMBLLikeFlatFile.html | 429 kB | 28 May 2026, 3:49:23 PM | |
| EMBLLikeFlatFile.js | 17 kB | 28 May 2026, 3:49:23 PM | |
| EmblFlatFile.html | 134 kB | 28 May 2026, 3:49:23 PM | |
| EmblFlatFile.js | 4 kB | 28 May 2026, 3:49:23 PM | |
| EmblFlatFileTest.html | 229 kB | 28 May 2026, 3:49:26 PM | |
| EmblFlatFileTest.js | 5 kB | 28 May 2026, 3:49:26 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_m.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| EmblFlatFileTest_testParseToRNA_sn.html | 38 kB | 28 May 2026, 3:49:26 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_gk.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_ou.html | 22 kB | 28 May 2026, 3:49:26 PM | |
| EmblFlatFileTest_testParse_yd.html | 56 kB | 28 May 2026, 3:49:26 PM | |
| EmblFlatFileTest_testRemoveQuotes_183.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| FastaFile.html | 423 kB | 28 May 2026, 3:49:24 PM | |
| FastaFile.js | 110 kB | 28 May 2026, 3:49:24 PM | |
| FeaturesFile.html | 765 kB | 28 May 2026, 3:49:23 PM | |
| FeaturesFile.js | 28 kB | 28 May 2026, 3:49:23 PM | |
| FeaturesFileTest.html | 522 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest.js | 13 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_readGff3File_1i0.html | 39 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_simpleGff3FileClass_tn.html | 37 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_simpleGff3FileLoader_rh.html | 132 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_ut.html | 37 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testOutputFeatureFilters_1ef.html | 17 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testParseFilters_1a4.html | 14 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_19e.html | 110 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_1hj.html | 136 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testParse_pureGff3_1i6.html | 110 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testParse_v8.html | 140 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testPrintGffFormat_1jw.html | 126 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_8n.html | 126 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testPrintJalviewFormat_1cf.html | 102 kB | 28 May 2026, 3:49:26 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_mw.html | 128 kB | 28 May 2026, 3:49:26 PM | |
| FileFormat.html | 968 kB | 28 May 2026, 3:49:23 PM | |
| FileFormat.js | 93 kB | 28 May 2026, 3:49:23 PM | |
| FileFormatException.html | 58 kB | 28 May 2026, 3:49:24 PM | |
| FileFormatException.js | 2 kB | 28 May 2026, 3:49:24 PM | |
| FileFormatI.html | 47 kB | 28 May 2026, 3:49:23 PM | |
| FileFormatI.js | 0.7 kB | 28 May 2026, 3:49:23 PM | |
| FileFormats.html | 603 kB | 28 May 2026, 3:49:23 PM | |
| FileFormats.js | 85 kB | 28 May 2026, 3:49:23 PM | |
| FileFormatsTest.html | 137 kB | 28 May 2026, 3:49:26 PM | |
| FileFormatsTest.js | 3 kB | 28 May 2026, 3:49:26 PM | |
| FileFormatsTest_testDeregisterFileFormat_1ce.html | 19 kB | 28 May 2026, 3:49:26 PM | |
| FileFormatsTest_testForName_yy.html | 25 kB | 28 May 2026, 3:49:26 PM | |
| FileFormatsTest_testGetFormats_hm.html | 25 kB | 28 May 2026, 3:49:26 PM | |
| FileFormatsTest_testGetReadableFormats_1k9.html | 10 kB | 28 May 2026, 3:49:26 PM | |
| FileFormatsTest_testGetWritableFormats_1ee.html | 14 kB | 28 May 2026, 3:49:26 PM | |
| FileFormatsTest_testIsIdentifiable_1kj.html | 10 kB | 28 May 2026, 3:49:26 PM | |
| FileFormatsTest_testRegisterFileFormat_yz.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester.html | 130 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester.js | 3 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester_testGzipIo_ve.html | 46 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester_testGziplocalFileIO_yb.html | 25 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester_testIsGzipInputStream_1ez.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester_testNonGzipURLIO_db.html | 24 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester_testNonGziplocalFileIO_z4.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester_testStarsInFasta1_9u.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| FileIOTester_testStarsInFasta2_mb.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| FileLoader.html | 615 kB | 28 May 2026, 3:49:23 PM | |
| FileLoader.js | 240 kB | 28 May 2026, 3:49:23 PM | |
| FileLoaderTest.html | 58 kB | 28 May 2026, 3:49:27 PM | |
| FileLoaderTest.js | 1 kB | 28 May 2026, 3:49:27 PM | |
| FileLoaderTest_testUpdateRecentlyOpened_ub.html | 14 kB | 28 May 2026, 3:49:27 PM | |
| FileParse.html | 937 kB | 28 May 2026, 3:49:23 PM | |
| FileParse.js | 338 kB | 28 May 2026, 3:49:23 PM | |
| FormatAdapter.html | 447 kB | 28 May 2026, 3:49:23 PM | |
| FormatAdapter.js | 54 kB | 28 May 2026, 3:49:23 PM | |
| FormatAdapterTest.html | 118 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest.js | 6 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_130.html | 21 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_14.html | 22 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_16o.html | 24 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_17p.html | 23 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_1e3.html | 23 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_1ed.html | 22 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_1fd.html | 23 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_1jj.html | 22 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_6j.html | 23 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_sa.html | 23 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_xd.html | 35 kB | 28 May 2026, 3:49:25 PM | |
| FormatAdapterTest_testRoundTrip_yk.html | 32 kB | 28 May 2026, 3:49:25 PM | |
| GenBankFile.html | 121 kB | 28 May 2026, 3:49:23 PM | |
| GenBankFile.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| GenBankFileTest.html | 133 kB | 28 May 2026, 3:49:25 PM | |
| GenBankFileTest.js | 3 kB | 28 May 2026, 3:49:25 PM | |
| GenBankFileTest_testParse_1fx.html | 20 kB | 28 May 2026, 3:49:25 PM | |
| HMMFile.html | 406 kB | 28 May 2026, 3:49:23 PM | |
| HMMFile.js | 22 kB | 28 May 2026, 3:49:23 PM | |
| HMMFileTest.html | 318 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest.js | 7 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testAppendModelAsString_5q.html | 10 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testAppendProperties_mo.html | 9 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testFillList_1iz.html | 8 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testParseAnnotations_fd.html | 17 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testParseHeaderLines_amino_170.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testParseHeaderLines_dna_75.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testParseModel_pa.html | 15 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testParse_1ht.html | 14 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testParse_minimalFile_1c7.html | 18 kB | 28 May 2026, 3:49:26 PM | |
| HMMFileTest_testPrint_roundTrip_d9.html | 16 kB | 28 May 2026, 3:49:26 PM | |
| HTMLOutput.html | 197 kB | 28 May 2026, 3:49:23 PM | |
| HTMLOutput.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| HtmlFile.html | 132 kB | 28 May 2026, 3:49:23 PM | |
| HtmlFile.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| HtmlFileTest.html | 39 kB | 28 May 2026, 3:49:26 PM | |
| HtmlFileTest.js | 0.6 kB | 28 May 2026, 3:49:26 PM | |
| HtmlSvgOutput.html | 173 kB | 28 May 2026, 3:49:23 PM | |
| HtmlSvgOutput.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| IdentifyFile.html | 582 kB | 28 May 2026, 3:49:23 PM | |
| IdentifyFile.js | 231 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest.html | 150 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest.js | 5 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_10i.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_13i.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_154.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_15s.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_16j.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_1gw.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_1j0.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_1ka.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_1kv.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_7c.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_a.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_dz.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_e1.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_featureFile_w0.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_gm.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_je.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_o3.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_s9.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_ug.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_v6.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_yc.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_zj.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testIdentify_zt.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_1dc.html | 8 kB | 28 May 2026, 3:49:24 PM | |
| InputStreamParser.html | 44 kB | 28 May 2026, 3:49:23 PM | |
| InputStreamParser.js | 0.6 kB | 28 May 2026, 3:49:23 PM | |
| IntKeyStringValueEntry.html | 40 kB | 28 May 2026, 3:49:24 PM | |
| IntKeyStringValueEntry.js | 0.6 kB | 28 May 2026, 3:49:24 PM | |
| JPredFile.html | 233 kB | 28 May 2026, 3:49:23 PM | |
| JPredFile.js | 6 kB | 28 May 2026, 3:49:23 PM | |
| JSONFile.html | 508 kB | 28 May 2026, 3:49:23 PM | |
| JSONFile.js | 14 kB | 28 May 2026, 3:49:23 PM | |
| JSONFileTest.html | 364 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest.js | 6 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_colorSchemeTest_1bd.html | 8 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_hiddenColsTest_124.html | 10 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_hiddenSeqsTest_mt.html | 8 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_isShowSeqFeaturesSet_i.html | 8 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_roundTripTest_1gc.html | 7 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_testAnnotationParsed_tk.html | 8 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_lf.html | 132 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_testGrpParsed_16r.html | 10 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_testGrpParsed_colourNone_116.html | 134 kB | 28 May 2026, 3:49:25 PM | |
| JSONFileTest_testSeqParsed_1u.html | 11 kB | 28 May 2026, 3:49:25 PM | |
| Jalview2xmlBase.html | 78 kB | 28 May 2026, 3:49:25 PM | |
| Jalview2xmlBase.js | 1 kB | 28 May 2026, 3:49:25 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 28 May 2026, 3:49:25 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 28 May 2026, 3:49:25 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_5t.html | 119 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileChooser.html | 529 kB | 28 May 2026, 3:49:23 PM | |
| JalviewFileChooser.js | 8 kB | 28 May 2026, 3:49:23 PM | |
| JalviewFileChooserTest.html | 104 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileChooserTest.js | 5 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1bx.html | 12 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1dq.html | 13 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1gj.html | 11 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1v.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_2i.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5z.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_7d.html | 22 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_dd.html | 12 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_e5.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_eu.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fe.html | 12 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_g2.html | 13 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i5.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_kv.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_pr.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_r8.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_vh.html | 12 kB | 28 May 2026, 3:49:26 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_x5.html | 12 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileFilter.html | 145 kB | 28 May 2026, 3:49:24 PM | |
| JalviewFileFilter.js | 2 kB | 28 May 2026, 3:49:24 PM | |
| JalviewFileView.html | 115 kB | 28 May 2026, 3:49:23 PM | |
| JalviewFileView.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| JalviewFileViewTest.html | 90 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileViewTest.js | 2 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileViewTest_testGetExtension_nu.html | 8 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileViewTest_testGetImageIcon_110.html | 42 kB | 28 May 2026, 3:49:25 PM | |
| JalviewFileViewTest_testGetTypeDescription_8m.html | 11 kB | 28 May 2026, 3:49:25 PM | |
| JnetAnnotationMaker.html | 140 kB | 28 May 2026, 3:49:23 PM | |
| JnetAnnotationMaker.js | 5 kB | 28 May 2026, 3:49:23 PM | |
| MSFfile.html | 212 kB | 28 May 2026, 3:49:24 PM | |
| MSFfile.js | 5 kB | 28 May 2026, 3:49:24 PM | |
| ModellerDescription.html | 243 kB | 28 May 2026, 3:49:23 PM | |
| ModellerDescription.js | 3 kB | 28 May 2026, 3:49:23 PM | |
| NewickFile.html | 567 kB | 28 May 2026, 3:49:23 PM | |
| NewickFile.js | 45 kB | 28 May 2026, 3:49:23 PM | |
| NewickFileTests.html | 121 kB | 28 May 2026, 3:49:25 PM | |
| NewickFileTests.js | 3 kB | 28 May 2026, 3:49:25 PM | |
| NewickFileTests_testTreeIO_16v.html | 61 kB | 28 May 2026, 3:49:25 PM | |
| NewickFileTests_testTreeIO_uf.html | 76 kB | 28 May 2026, 3:49:25 PM | |
| NewickFileTests_testTreeIO_y5.html | 49 kB | 28 May 2026, 3:49:25 PM | |
| PContactPredictionFile.html | 101 kB | 28 May 2026, 3:49:23 PM | |
| PContactPredictionFile.js | 1 kB | 28 May 2026, 3:49:23 PM | |
| PDBFeatureSettings.html | 105 kB | 28 May 2026, 3:49:23 PM | |
| PDBFeatureSettings.js | 6 kB | 28 May 2026, 3:49:23 PM | |
| PIRFile.html | 120 kB | 28 May 2026, 3:49:23 PM | |
| PIRFile.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| PfamFile.html | 131 kB | 28 May 2026, 3:49:23 PM | |
| PfamFile.js | 8 kB | 28 May 2026, 3:49:23 PM | |
| PfamFormatInputTest.html | 56 kB | 28 May 2026, 3:49:27 PM | |
| PfamFormatInputTest.js | 1.0 kB | 28 May 2026, 3:49:27 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_1dd.html | 31 kB | 28 May 2026, 3:49:27 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_1o.html | 19 kB | 28 May 2026, 3:49:27 PM | |
| PhylipFile.html | 176 kB | 28 May 2026, 3:49:23 PM | |
| PhylipFile.js | 6 kB | 28 May 2026, 3:49:23 PM | |
| PhylipFileTests.html | 128 kB | 28 May 2026, 3:49:24 PM | |
| PhylipFileTests.js | 3 kB | 28 May 2026, 3:49:24 PM | |
| PhylipFileTests_testInterleavedDataExtraction_vt.html | 19 kB | 28 May 2026, 3:49:24 PM | |
| PhylipFileTests_testInterleavedIO_5y.html | 23 kB | 28 May 2026, 3:49:24 PM | |
| PhylipFileTests_testSequentialDataExtraction_1fw.html | 19 kB | 28 May 2026, 3:49:24 PM | |
| PhylipFileTests_testSequentialIO_1fm.html | 42 kB | 28 May 2026, 3:49:24 PM | |
| PileUpfile.html | 112 kB | 28 May 2026, 3:49:23 PM | |
| PileUpfile.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| RNAMLfileTest.html | 66 kB | 28 May 2026, 3:49:27 PM | |
| RNAMLfileTest.js | 1 kB | 28 May 2026, 3:49:27 PM | |
| RNAMLfileTest_testRnamlSeqImport_1b6.html | 65 kB | 28 May 2026, 3:49:27 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_pv.html | 74 kB | 28 May 2026, 3:49:27 PM | |
| RnamlFile.html | 145 kB | 28 May 2026, 3:49:23 PM | |
| RnamlFile.js | 3 kB | 28 May 2026, 3:49:23 PM | |
| ScoreMatrixFile.html | 268 kB | 28 May 2026, 3:49:23 PM | |
| ScoreMatrixFile.js | 26 kB | 28 May 2026, 3:49:23 PM | |
| ScoreMatrixFileTest.html | 334 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest.js | 7 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_1hb.html | 11 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_1be.html | 11 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_8z.html | 11 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_lb.html | 17 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_x3.html | 17 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_l6.html | 17 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_pg.html | 17 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_v4.html | 23 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_169.html | 11 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_s1.html | 28 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_146.html | 43 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_n2.html | 17 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_12i.html | 17 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_10x.html | 12 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_wg.html | 20 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_28.html | 23 kB | 28 May 2026, 3:49:24 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_161.html | 17 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_ga.html | 17 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_1aj.html | 26 kB | 28 May 2026, 3:49:25 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_sv.html | 47 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReport.html | 635 kB | 28 May 2026, 3:49:23 PM | |
| SequenceAnnotationReport.js | 40 kB | 28 May 2026, 3:49:23 PM | |
| SequenceAnnotationReportTest.html | 307 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_16x.html | 33 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_s3.html | 34 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_nz.html | 23 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_hf.html | 13 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_2n.html | 28 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_1ju.html | 30 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_jb.html | 31 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_1e7.html | 22 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_yh.html | 17 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_37.html | 29 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_1g.html | 42 kB | 28 May 2026, 3:49:25 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_gb.html | 40 kB | 28 May 2026, 3:49:25 PM | |
| SimpleBlastFile.html | 152 kB | 28 May 2026, 3:49:23 PM | |
| SimpleBlastFile.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| StockholmFile.html | 717 kB | 28 May 2026, 3:49:23 PM | |
| StockholmFile.js | 63 kB | 28 May 2026, 3:49:23 PM | |
| StockholmFileTest.html | 515 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest.js | 20 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_1g4.html | 68 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_dbrefOutput_qn.html | 62 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_descriptionLineOutput_1ho.html | 57 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_detectWussBrackets_1fz.html | 16 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_nc.html | 68 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_pfamFileDataExtraction_ee.html | 71 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_pfamFileIO_1k3.html | 70 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_rfamFileIO_hk.html | 72 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_19y.html | 41 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_va.html | 67 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_1ja.html | 63 kB | 28 May 2026, 3:49:24 PM | |
| StockholmFileTest_testAnnotationEquivalence_5s.html | 53 kB | 28 May 2026, 3:49:24 PM | |
| StructureFile.html | 430 kB | 28 May 2026, 3:49:23 PM | |
| StructureFile.js | 79 kB | 28 May 2026, 3:49:23 PM | |
| TCoffeeScoreFile.html | 362 kB | 28 May 2026, 3:49:23 PM | |
| TCoffeeScoreFile.js | 14 kB | 28 May 2026, 3:49:23 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest_testGetAsArray_qt.html | 43 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest_testGetAsList_5x.html | 27 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_192.html | 43 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_m9.html | 11 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest_testParse_5k.html | 26 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest_testReadBlock_18e.html | 22 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest_testReadHeader_1cq.html | 20 kB | 28 May 2026, 3:49:26 PM | |
| TCoffeeScoreFileTest_testWrongFile_ml.html | 42 kB | 28 May 2026, 3:49:27 PM | |
| VamsasAppDatastore.html | 1.27 MB | 28 May 2026, 3:49:23 PM | |
| VamsasAppDatastore.js | 13 kB | 28 May 2026, 3:49:23 PM | |
| WSWUBlastClient.html | 177 kB | 28 May 2026, 3:49:23 PM | |
| WSWUBlastClient.js | 2 kB | 28 May 2026, 3:49:23 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 28 May 2026, 3:49:27 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 28 May 2026, 3:49:27 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_aw.html | 114 kB | 28 May 2026, 3:49:27 PM | |
| pkg-summary.html | 89 kB | 28 May 2026, 3:49:27 PM | |
| quick-wins.html | 33 kB | 28 May 2026, 3:49:27 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 28 May 2026, 3:49:11 PM | |
| test-AnnotationExporterTest.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 28 May 2026, 3:49:11 PM | |
| test-BSMLFileTest.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-BackupFilesTest.html | 11 kB | 28 May 2026, 3:49:11 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 28 May 2026, 3:49:11 PM | |
| test-ClustalFileTest.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-EmblFlatFileTest.html | 11 kB | 28 May 2026, 3:49:11 PM | |
| test-FeaturesFileTest.html | 15 kB | 28 May 2026, 3:49:11 PM | |
| test-FileFormatsTest.html | 12 kB | 28 May 2026, 3:49:11 PM | |
| test-FileIOTester.html | 12 kB | 28 May 2026, 3:49:11 PM | |
| test-FileLoaderTest.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-FormatAdapterTest.html | 14 kB | 28 May 2026, 3:49:11 PM | |
| test-GenBankFileTest.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-HMMFileTest.html | 13 kB | 28 May 2026, 3:49:11 PM | |
| test-HtmlFileTest.html | 8 kB | 28 May 2026, 3:49:11 PM | |
| test-IdentifyFileTest.html | 20 kB | 28 May 2026, 3:49:11 PM | |
| test-JSONFileTest.html | 13 kB | 28 May 2026, 3:49:11 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-JalviewFileChooserTest.html | 17 kB | 28 May 2026, 3:49:11 PM | |
| test-JalviewFileViewTest.html | 10 kB | 28 May 2026, 3:49:11 PM | |
| test-NewickFileTests.html | 10 kB | 28 May 2026, 3:49:11 PM | |
| test-PfamFormatInputTest.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-PhylipFileTests.html | 10 kB | 28 May 2026, 3:49:11 PM | |
| test-RNAMLfileTest.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 28 May 2026, 3:49:11 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 28 May 2026, 3:49:11 PM | |
| test-StockholmFileTest.html | 14 kB | 28 May 2026, 3:49:11 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 28 May 2026, 3:49:11 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 28 May 2026, 3:49:11 PM | |
| test-pkg-summary.html | 36 kB | 28 May 2026, 3:49:11 PM | |
| testsrc-pkg-summary.html | 48 kB | 28 May 2026, 3:49:27 PM | |
| top-risks.html | 34 kB | 28 May 2026, 3:49:27 PM |