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Build files
Jalview Builds - Gradle Develop Build - task-JAL-4645_JAL-4320_add_gradle_wrapper - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 14 Jan 2026, 2:42:08 PM | |
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exceptions | 14 Jan 2026, 2:41:53 PM | |
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|
gff | 14 Jan 2026, 2:42:08 PM | |
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|
packed | 14 Jan 2026, 2:42:26 PM | |
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vamsas | 14 Jan 2026, 2:41:46 PM | |
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vcf | 14 Jan 2026, 2:42:07 PM | |
| A3mFile.html | 58 kB | 14 Jan 2026, 2:41:48 PM | |
| A3mFile.js | 0.9 kB | 14 Jan 2026, 2:41:48 PM | |
| AMSAFile.html | 80 kB | 14 Jan 2026, 2:41:48 PM | |
| AMSAFile.js | 1 kB | 14 Jan 2026, 2:41:48 PM | |
| AlignFile.html | 717 kB | 14 Jan 2026, 2:41:48 PM | |
| AlignFile.js | 219 kB | 14 Jan 2026, 2:41:48 PM | |
| AlignmentFileReaderI.html | 35 kB | 14 Jan 2026, 2:41:47 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 14 Jan 2026, 2:41:47 PM | |
| AlignmentFileWriterI.html | 33 kB | 14 Jan 2026, 2:41:48 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 14 Jan 2026, 2:41:48 PM | |
| AlignmentProperties.html | 94 kB | 14 Jan 2026, 2:41:47 PM | |
| AlignmentProperties.js | 1 kB | 14 Jan 2026, 2:41:47 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_2t.html | 21 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_fd.html | 24 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_1f2.html | 28 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_oe.html | 181 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotationExporterTest.html | 59 kB | 14 Jan 2026, 2:41:49 PM | |
| AnnotationExporterTest.js | 1 kB | 14 Jan 2026, 2:41:49 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_7o.html | 125 kB | 14 Jan 2026, 2:41:49 PM | |
| AnnotationFile.html | 1.03 MB | 14 Jan 2026, 2:41:48 PM | |
| AnnotationFile.js | 62 kB | 14 Jan 2026, 2:41:48 PM | |
| AnnotationFileIOTest.html | 241 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotationFileIOTest.js | 5 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_bq.html | 39 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_18x.html | 118 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotationFileIOTest_testCalcIdRestore_11n.html | 126 kB | 14 Jan 2026, 2:41:51 PM | |
| AnnotationFileIOTest_testProviderRestore_1ic.html | 118 kB | 14 Jan 2026, 2:41:51 PM | |
| AppletFormatAdapter.html | 666 kB | 14 Jan 2026, 2:41:47 PM | |
| AppletFormatAdapter.js | 123 kB | 14 Jan 2026, 2:41:47 PM | |
| BLCFile.html | 153 kB | 14 Jan 2026, 2:41:48 PM | |
| BLCFile.js | 3 kB | 14 Jan 2026, 2:41:48 PM | |
| BSMLFile.html | 135 kB | 14 Jan 2026, 2:41:48 PM | |
| BSMLFile.js | 2 kB | 14 Jan 2026, 2:41:48 PM | |
| BSMLFileTest.html | 54 kB | 14 Jan 2026, 2:41:48 PM | |
| BSMLFileTest.js | 1.0 kB | 14 Jan 2026, 2:41:48 PM | |
| BSMLFileTest_testParse_BSML_eh.html | 52 kB | 14 Jan 2026, 2:41:48 PM | |
| BackupFilenameFilter.html | 68 kB | 14 Jan 2026, 2:41:47 PM | |
| BackupFilenameFilter.js | 3 kB | 14 Jan 2026, 2:41:47 PM | |
| BackupFilenameParts.html | 129 kB | 14 Jan 2026, 2:41:48 PM | |
| BackupFilenameParts.js | 7 kB | 14 Jan 2026, 2:41:48 PM | |
| BackupFiles.html | 598 kB | 14 Jan 2026, 2:41:47 PM | |
| BackupFiles.js | 59 kB | 14 Jan 2026, 2:41:47 PM | |
| BackupFilesPresetEntry.html | 155 kB | 14 Jan 2026, 2:41:48 PM | |
| BackupFilesPresetEntry.js | 16 kB | 14 Jan 2026, 2:41:48 PM | |
| BackupFilesTest.html | 296 kB | 14 Jan 2026, 2:41:51 PM | |
| BackupFilesTest.js | 10 kB | 14 Jan 2026, 2:41:51 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_ca.html | 122 kB | 14 Jan 2026, 2:41:51 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_11r.html | 122 kB | 14 Jan 2026, 2:41:51 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_pc.html | 122 kB | 14 Jan 2026, 2:41:51 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_1gh.html | 115 kB | 14 Jan 2026, 2:41:51 PM | |
| BackupFilesTest_noBackupsEnabledTest_15b.html | 114 kB | 14 Jan 2026, 2:41:51 PM | |
| BioJsHTMLOutput.html | 280 kB | 14 Jan 2026, 2:41:48 PM | |
| BioJsHTMLOutput.js | 73 kB | 14 Jan 2026, 2:41:48 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 14 Jan 2026, 2:41:49 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 14 Jan 2026, 2:41:49 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_xa.html | 8 kB | 14 Jan 2026, 2:41:49 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_1cb.html | 8 kB | 14 Jan 2026, 2:41:49 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_1d8.html | 16 kB | 14 Jan 2026, 2:41:49 PM | |
| ClustalFile.html | 158 kB | 14 Jan 2026, 2:41:48 PM | |
| ClustalFile.js | 6 kB | 14 Jan 2026, 2:41:48 PM | |
| ClustalFileTest.html | 65 kB | 14 Jan 2026, 2:41:51 PM | |
| ClustalFileTest.js | 1 kB | 14 Jan 2026, 2:41:51 PM | |
| ClustalFileTest_testParse_noNumbering_jg.html | 14 kB | 14 Jan 2026, 2:41:51 PM | |
| ClustalFileTest_testParse_withNumbering_2n.html | 14 kB | 14 Jan 2026, 2:41:51 PM | |
| CountReader.html | 48 kB | 14 Jan 2026, 2:41:48 PM | |
| CountReader.js | 0.7 kB | 14 Jan 2026, 2:41:48 PM | |
| CrossRef2xmlTests.html | 327 kB | 14 Jan 2026, 2:41:48 PM | |
| CrossRef2xmlTests.js | 4 kB | 14 Jan 2026, 2:41:48 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_1dl.html | 219 kB | 14 Jan 2026, 2:41:48 PM | |
| DBRefFile.html | 43 kB | 14 Jan 2026, 2:41:48 PM | |
| DBRefFile.js | 0.6 kB | 14 Jan 2026, 2:41:48 PM | |
| DataSourceType.html | 254 kB | 14 Jan 2026, 2:41:47 PM | |
| DataSourceType.js | 23 kB | 14 Jan 2026, 2:41:47 PM | |
| EMBLLikeFlatFile.html | 429 kB | 14 Jan 2026, 2:41:48 PM | |
| EMBLLikeFlatFile.js | 17 kB | 14 Jan 2026, 2:41:48 PM | |
| EmblFlatFile.html | 134 kB | 14 Jan 2026, 2:41:47 PM | |
| EmblFlatFile.js | 4 kB | 14 Jan 2026, 2:41:47 PM | |
| EmblFlatFileTest.html | 229 kB | 14 Jan 2026, 2:41:50 PM | |
| EmblFlatFileTest.js | 5 kB | 14 Jan 2026, 2:41:50 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_r6.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| EmblFlatFileTest_testParseToRNA_5a.html | 23 kB | 14 Jan 2026, 2:41:50 PM | |
| EmblFlatFileTest_testParse_1jw.html | 28 kB | 14 Jan 2026, 2:41:50 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_ah.html | 11 kB | 14 Jan 2026, 2:41:50 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_7a.html | 22 kB | 14 Jan 2026, 2:41:50 PM | |
| EmblFlatFileTest_testRemoveQuotes_19b.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| FastaFile.html | 422 kB | 14 Jan 2026, 2:41:48 PM | |
| FastaFile.js | 109 kB | 14 Jan 2026, 2:41:48 PM | |
| FeaturesFile.html | 765 kB | 14 Jan 2026, 2:41:48 PM | |
| FeaturesFile.js | 27 kB | 14 Jan 2026, 2:41:48 PM | |
| FeaturesFileTest.html | 522 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest.js | 13 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_readGff3File_vd.html | 52 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_simpleGff3FileClass_49.html | 37 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_simpleGff3FileLoader_8o.html | 119 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_1hs.html | 49 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testOutputFeatureFilters_xg.html | 26 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testParseFilters_yo.html | 18 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_g9.html | 104 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testParse_jf.html | 134 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_9t.html | 135 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testParse_pureGff3_jr.html | 134 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testPrintGffFormat_mp.html | 125 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_73.html | 119 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testPrintJalviewFormat_lv.html | 131 kB | 14 Jan 2026, 2:41:50 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_e5.html | 135 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormat.html | 960 kB | 14 Jan 2026, 2:41:48 PM | |
| FileFormat.js | 91 kB | 14 Jan 2026, 2:41:48 PM | |
| FileFormatException.html | 58 kB | 14 Jan 2026, 2:41:48 PM | |
| FileFormatException.js | 2 kB | 14 Jan 2026, 2:41:48 PM | |
| FileFormatI.html | 47 kB | 14 Jan 2026, 2:41:47 PM | |
| FileFormatI.js | 0.7 kB | 14 Jan 2026, 2:41:47 PM | |
| FileFormats.html | 585 kB | 14 Jan 2026, 2:41:47 PM | |
| FileFormats.js | 83 kB | 14 Jan 2026, 2:41:47 PM | |
| FileFormatsTest.html | 137 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormatsTest.js | 3 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormatsTest_testDeregisterFileFormat_pq.html | 20 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormatsTest_testForName_3o.html | 23 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormatsTest_testGetFormats_yg.html | 14 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormatsTest_testGetReadableFormats_129.html | 15 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormatsTest_testGetWritableFormats_zq.html | 15 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormatsTest_testIsIdentifiable_19d.html | 10 kB | 14 Jan 2026, 2:41:50 PM | |
| FileFormatsTest_testRegisterFileFormat_z3.html | 14 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester.html | 130 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester.js | 3 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester_testGzipIo_19x.html | 30 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester_testGziplocalFileIO_18q.html | 14 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester_testIsGzipInputStream_1kf.html | 15 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester_testNonGzipURLIO_e4.html | 16 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester_testNonGziplocalFileIO_1gm.html | 21 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester_testStarsInFasta1_e8.html | 14 kB | 14 Jan 2026, 2:41:50 PM | |
| FileIOTester_testStarsInFasta2_wc.html | 14 kB | 14 Jan 2026, 2:41:50 PM | |
| FileLoader.html | 613 kB | 14 Jan 2026, 2:41:48 PM | |
| FileLoader.js | 239 kB | 14 Jan 2026, 2:41:48 PM | |
| FileLoaderTest.html | 58 kB | 14 Jan 2026, 2:41:51 PM | |
| FileLoaderTest.js | 1.0 kB | 14 Jan 2026, 2:41:51 PM | |
| FileLoaderTest_testUpdateRecentlyOpened_ir.html | 18 kB | 14 Jan 2026, 2:41:51 PM | |
| FileParse.html | 929 kB | 14 Jan 2026, 2:41:47 PM | |
| FileParse.js | 333 kB | 14 Jan 2026, 2:41:47 PM | |
| FormatAdapter.html | 446 kB | 14 Jan 2026, 2:41:47 PM | |
| FormatAdapter.js | 53 kB | 14 Jan 2026, 2:41:47 PM | |
| FormatAdapterTest.html | 118 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest.js | 6 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_13e.html | 24 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_19r.html | 23 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_1bq.html | 25 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_1ei.html | 24 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_2q.html | 22 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_34.html | 24 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_53.html | 34 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_5c.html | 24 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_de.html | 37 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_na.html | 23 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_si.html | 23 kB | 14 Jan 2026, 2:41:49 PM | |
| FormatAdapterTest_testRoundTrip_v1.html | 29 kB | 14 Jan 2026, 2:41:49 PM | |
| GenBankFile.html | 121 kB | 14 Jan 2026, 2:41:47 PM | |
| GenBankFile.js | 2 kB | 14 Jan 2026, 2:41:47 PM | |
| GenBankFileTest.html | 132 kB | 14 Jan 2026, 2:41:49 PM | |
| GenBankFileTest.js | 3 kB | 14 Jan 2026, 2:41:49 PM | |
| GenBankFileTest_testParse_k5.html | 20 kB | 14 Jan 2026, 2:41:49 PM | |
| HMMFile.html | 406 kB | 14 Jan 2026, 2:41:48 PM | |
| HMMFile.js | 23 kB | 14 Jan 2026, 2:41:48 PM | |
| HMMFileTest.html | 318 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest.js | 7 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testAppendModelAsString_du.html | 10 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testAppendProperties_1c6.html | 9 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testFillList_su.html | 8 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testParseAnnotations_nf.html | 17 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testParseHeaderLines_amino_1h9.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testParseHeaderLines_dna_124.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testParseModel_1hw.html | 15 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testParse_minimalFile_1hr.html | 18 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testParse_te.html | 14 kB | 14 Jan 2026, 2:41:50 PM | |
| HMMFileTest_testPrint_roundTrip_ps.html | 16 kB | 14 Jan 2026, 2:41:50 PM | |
| HTMLOutput.html | 197 kB | 14 Jan 2026, 2:41:48 PM | |
| HTMLOutput.js | 3 kB | 14 Jan 2026, 2:41:48 PM | |
| HtmlFile.html | 132 kB | 14 Jan 2026, 2:41:48 PM | |
| HtmlFile.js | 2 kB | 14 Jan 2026, 2:41:48 PM | |
| HtmlFileTest.html | 39 kB | 14 Jan 2026, 2:41:50 PM | |
| HtmlFileTest.js | 0.6 kB | 14 Jan 2026, 2:41:50 PM | |
| HtmlSvgOutput.html | 173 kB | 14 Jan 2026, 2:41:47 PM | |
| HtmlSvgOutput.js | 2 kB | 14 Jan 2026, 2:41:47 PM | |
| IdentifyFile.html | 578 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFile.js | 227 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest.html | 148 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest.js | 5 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_12g.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_12m.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_130.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_15f.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_165.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_185.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_1hi.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_1i2.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_6b.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_6r.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_8w.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_ae.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_bf.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_featureFile_bd.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_gf.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_hk.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_kb.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_kt.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_lg.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_q5.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testIdentify_z6.html | 11 kB | 14 Jan 2026, 2:41:48 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_18p.html | 8 kB | 14 Jan 2026, 2:41:48 PM | |
| InputStreamParser.html | 44 kB | 14 Jan 2026, 2:41:48 PM | |
| InputStreamParser.js | 0.6 kB | 14 Jan 2026, 2:41:48 PM | |
| IntKeyStringValueEntry.html | 40 kB | 14 Jan 2026, 2:41:48 PM | |
| IntKeyStringValueEntry.js | 0.6 kB | 14 Jan 2026, 2:41:48 PM | |
| JPredFile.html | 233 kB | 14 Jan 2026, 2:41:48 PM | |
| JPredFile.js | 6 kB | 14 Jan 2026, 2:41:48 PM | |
| JSONFile.html | 508 kB | 14 Jan 2026, 2:41:47 PM | |
| JSONFile.js | 14 kB | 14 Jan 2026, 2:41:47 PM | |
| JSONFileTest.html | 364 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest.js | 6 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_colorSchemeTest_9l.html | 8 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_hiddenColsTest_up.html | 10 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_hiddenSeqsTest_co.html | 8 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_isShowSeqFeaturesSet_ux.html | 8 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_roundTripTest_1kw.html | 7 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_testAnnotationParsed_uh.html | 8 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_3m.html | 144 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_testGrpParsed_colourNone_44.html | 128 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_testGrpParsed_n3.html | 10 kB | 14 Jan 2026, 2:41:49 PM | |
| JSONFileTest_testSeqParsed_ne.html | 30 kB | 14 Jan 2026, 2:41:49 PM | |
| Jalview2xmlBase.html | 78 kB | 14 Jan 2026, 2:41:49 PM | |
| Jalview2xmlBase.js | 1 kB | 14 Jan 2026, 2:41:49 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 14 Jan 2026, 2:41:49 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 14 Jan 2026, 2:41:49 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_w6.html | 119 kB | 14 Jan 2026, 2:41:49 PM | |
| JalviewFileChooser.html | 528 kB | 14 Jan 2026, 2:41:48 PM | |
| JalviewFileChooser.js | 8 kB | 14 Jan 2026, 2:41:48 PM | |
| JalviewFileChooserTest.html | 103 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest.js | 5 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12.html | 14 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_17n.html | 21 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_18c.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1bb.html | 15 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1il.html | 11 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1jl.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_21.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_8v.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_a6.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ai.html | 11 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_am.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ec.html | 13 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_k0.html | 12 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qc.html | 13 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_u7.html | 11 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_vo.html | 14 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_x4.html | 13 kB | 14 Jan 2026, 2:41:50 PM | |
| JalviewFileFilter.html | 145 kB | 14 Jan 2026, 2:41:48 PM | |
| JalviewFileFilter.js | 2 kB | 14 Jan 2026, 2:41:48 PM | |
| JalviewFileView.html | 115 kB | 14 Jan 2026, 2:41:47 PM | |
| JalviewFileView.js | 2 kB | 14 Jan 2026, 2:41:47 PM | |
| JalviewFileViewTest.html | 90 kB | 14 Jan 2026, 2:41:49 PM | |
| JalviewFileViewTest.js | 2 kB | 14 Jan 2026, 2:41:49 PM | |
| JalviewFileViewTest_testGetExtension_hr.html | 39 kB | 14 Jan 2026, 2:41:49 PM | |
| JalviewFileViewTest_testGetImageIcon_1ju.html | 42 kB | 14 Jan 2026, 2:41:49 PM | |
| JalviewFileViewTest_testGetTypeDescription_14t.html | 11 kB | 14 Jan 2026, 2:41:49 PM | |
| JnetAnnotationMaker.html | 140 kB | 14 Jan 2026, 2:41:48 PM | |
| JnetAnnotationMaker.js | 5 kB | 14 Jan 2026, 2:41:48 PM | |
| MSFfile.html | 212 kB | 14 Jan 2026, 2:41:48 PM | |
| MSFfile.js | 5 kB | 14 Jan 2026, 2:41:48 PM | |
| ModellerDescription.html | 243 kB | 14 Jan 2026, 2:41:47 PM | |
| ModellerDescription.js | 3 kB | 14 Jan 2026, 2:41:47 PM | |
| NewickFile.html | 567 kB | 14 Jan 2026, 2:41:48 PM | |
| NewickFile.js | 45 kB | 14 Jan 2026, 2:41:48 PM | |
| NewickFileTests.html | 121 kB | 14 Jan 2026, 2:41:49 PM | |
| NewickFileTests.js | 3 kB | 14 Jan 2026, 2:41:49 PM | |
| NewickFileTests_testTreeIO_10l.html | 69 kB | 14 Jan 2026, 2:41:49 PM | |
| NewickFileTests_testTreeIO_1bz.html | 70 kB | 14 Jan 2026, 2:41:49 PM | |
| NewickFileTests_testTreeIO_ma.html | 59 kB | 14 Jan 2026, 2:41:49 PM | |
| PContactPredictionFile.html | 101 kB | 14 Jan 2026, 2:41:48 PM | |
| PContactPredictionFile.js | 1 kB | 14 Jan 2026, 2:41:48 PM | |
| PDBFeatureSettings.html | 103 kB | 14 Jan 2026, 2:41:48 PM | |
| PDBFeatureSettings.js | 6 kB | 14 Jan 2026, 2:41:48 PM | |
| PIRFile.html | 120 kB | 14 Jan 2026, 2:41:47 PM | |
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| PfamFile.html | 131 kB | 14 Jan 2026, 2:41:48 PM | |
| PfamFile.js | 8 kB | 14 Jan 2026, 2:41:48 PM | |
| PfamFormatInputTest.html | 56 kB | 14 Jan 2026, 2:41:51 PM | |
| PfamFormatInputTest.js | 1 kB | 14 Jan 2026, 2:41:51 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_1bl.html | 35 kB | 14 Jan 2026, 2:41:51 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_1gf.html | 31 kB | 14 Jan 2026, 2:41:51 PM | |
| PhylipFile.html | 176 kB | 14 Jan 2026, 2:41:47 PM | |
| PhylipFile.js | 6 kB | 14 Jan 2026, 2:41:47 PM | |
| PhylipFileTests.html | 128 kB | 14 Jan 2026, 2:41:49 PM | |
| PhylipFileTests.js | 3 kB | 14 Jan 2026, 2:41:49 PM | |
| PhylipFileTests_testInterleavedDataExtraction_12y.html | 42 kB | 14 Jan 2026, 2:41:49 PM | |
| PhylipFileTests_testInterleavedIO_16k.html | 42 kB | 14 Jan 2026, 2:41:49 PM | |
| PhylipFileTests_testSequentialDataExtraction_3l.html | 42 kB | 14 Jan 2026, 2:41:49 PM | |
| PhylipFileTests_testSequentialIO_ot.html | 42 kB | 14 Jan 2026, 2:41:49 PM | |
| PileUpfile.html | 112 kB | 14 Jan 2026, 2:41:48 PM | |
| PileUpfile.js | 2 kB | 14 Jan 2026, 2:41:48 PM | |
| RNAMLfileTest.html | 66 kB | 14 Jan 2026, 2:41:51 PM | |
| RNAMLfileTest.js | 1 kB | 14 Jan 2026, 2:41:51 PM | |
| RNAMLfileTest_testRnamlSeqImport_18h.html | 56 kB | 14 Jan 2026, 2:41:51 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_vs.html | 78 kB | 14 Jan 2026, 2:41:51 PM | |
| RnamlFile.html | 145 kB | 14 Jan 2026, 2:41:48 PM | |
| RnamlFile.js | 3 kB | 14 Jan 2026, 2:41:48 PM | |
| ScoreMatrixFile.html | 268 kB | 14 Jan 2026, 2:41:48 PM | |
| ScoreMatrixFile.js | 26 kB | 14 Jan 2026, 2:41:48 PM | |
| ScoreMatrixFileTest.html | 334 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest.js | 7 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_1gw.html | 37 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_ys.html | 22 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_1dz.html | 37 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_y2.html | 16 kB | 14 Jan 2026, 2:41:49 PM | |
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| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_1in.html | 30 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_gn.html | 31 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_ki.html | 29 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_ty.html | 35 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_rn.html | 11 kB | 14 Jan 2026, 2:41:49 PM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_17p.html | 12 kB | 14 Jan 2026, 2:41:49 PM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_u3.html | 35 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_xy.html | 22 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_1h0.html | 20 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_70.html | 22 kB | 14 Jan 2026, 2:41:49 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_1db.html | 25 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReport.html | 634 kB | 14 Jan 2026, 2:41:47 PM | |
| SequenceAnnotationReport.js | 40 kB | 14 Jan 2026, 2:41:47 PM | |
| SequenceAnnotationReportTest.html | 307 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_ih.html | 22 kB | 14 Jan 2026, 2:41:50 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_qu.html | 26 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_1f3.html | 21 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_1ke.html | 10 kB | 14 Jan 2026, 2:41:50 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_u4.html | 20 kB | 14 Jan 2026, 2:41:50 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_mv.html | 22 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_uk.html | 30 kB | 14 Jan 2026, 2:41:50 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_ml.html | 26 kB | 14 Jan 2026, 2:41:50 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_mg.html | 23 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_ej.html | 23 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_109.html | 30 kB | 14 Jan 2026, 2:41:49 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_o.html | 25 kB | 14 Jan 2026, 2:41:50 PM | |
| SimpleBlastFile.html | 152 kB | 14 Jan 2026, 2:41:48 PM | |
| SimpleBlastFile.js | 2 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFile.html | 717 kB | 14 Jan 2026, 2:41:47 PM | |
| StockholmFile.js | 62 kB | 14 Jan 2026, 2:41:47 PM | |
| StockholmFileTest.html | 515 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest.js | 20 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_pk.html | 52 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_dbrefOutput_re.html | 45 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_descriptionLineOutput_vp.html | 43 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_detectWussBrackets_60.html | 20 kB | 14 Jan 2026, 2:41:49 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_2i.html | 52 kB | 14 Jan 2026, 2:41:49 PM | |
| StockholmFileTest_pfamFileDataExtraction_x8.html | 44 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_pfamFileIO_14y.html | 51 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_rfamFileIO_8c.html | 53 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_lh.html | 41 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_xr.html | 45 kB | 14 Jan 2026, 2:41:49 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_170.html | 33 kB | 14 Jan 2026, 2:41:48 PM | |
| StockholmFileTest_testAnnotationEquivalence_2o.html | 14 kB | 14 Jan 2026, 2:41:48 PM | |
| StructureFile.html | 429 kB | 14 Jan 2026, 2:41:48 PM | |
| StructureFile.js | 79 kB | 14 Jan 2026, 2:41:48 PM | |
| TCoffeeScoreFile.html | 362 kB | 14 Jan 2026, 2:41:47 PM | |
| TCoffeeScoreFile.js | 15 kB | 14 Jan 2026, 2:41:47 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 14 Jan 2026, 2:41:50 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 14 Jan 2026, 2:41:50 PM | |
| TCoffeeScoreFileTest_testGetAsArray_lu.html | 11 kB | 14 Jan 2026, 2:41:51 PM | |
| TCoffeeScoreFileTest_testGetAsList_1iv.html | 11 kB | 14 Jan 2026, 2:41:51 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_tg.html | 11 kB | 14 Jan 2026, 2:41:50 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_qh.html | 11 kB | 14 Jan 2026, 2:41:51 PM | |
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| TCoffeeScoreFileTest_testReadBlock_s5.html | 10 kB | 14 Jan 2026, 2:41:51 PM | |
| TCoffeeScoreFileTest_testReadHeader_3k.html | 12 kB | 14 Jan 2026, 2:41:51 PM | |
| TCoffeeScoreFileTest_testWrongFile_19u.html | 10 kB | 14 Jan 2026, 2:41:51 PM | |
| VamsasAppDatastore.html | 1.27 MB | 14 Jan 2026, 2:41:48 PM | |
| VamsasAppDatastore.js | 13 kB | 14 Jan 2026, 2:41:48 PM | |
| WSWUBlastClient.html | 177 kB | 14 Jan 2026, 2:41:47 PM | |
| WSWUBlastClient.js | 2 kB | 14 Jan 2026, 2:41:47 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 14 Jan 2026, 2:41:51 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 14 Jan 2026, 2:41:51 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_qp.html | 101 kB | 14 Jan 2026, 2:41:51 PM | |
| pkg-summary.html | 89 kB | 14 Jan 2026, 2:41:51 PM | |
| quick-wins.html | 33 kB | 14 Jan 2026, 2:41:51 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 14 Jan 2026, 2:41:36 PM | |
| test-AnnotationExporterTest.html | 9 kB | 14 Jan 2026, 2:41:36 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 14 Jan 2026, 2:41:36 PM | |
| test-BSMLFileTest.html | 9 kB | 14 Jan 2026, 2:41:35 PM | |
| test-BackupFilesTest.html | 11 kB | 14 Jan 2026, 2:41:36 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 14 Jan 2026, 2:41:35 PM | |
| test-ClustalFileTest.html | 9 kB | 14 Jan 2026, 2:41:36 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 14 Jan 2026, 2:41:35 PM | |
| test-EmblFlatFileTest.html | 11 kB | 14 Jan 2026, 2:41:36 PM | |
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| test-FileLoaderTest.html | 9 kB | 14 Jan 2026, 2:41:36 PM | |
| test-FormatAdapterTest.html | 14 kB | 14 Jan 2026, 2:41:36 PM | |
| test-GenBankFileTest.html | 9 kB | 14 Jan 2026, 2:41:36 PM | |
| test-HMMFileTest.html | 13 kB | 14 Jan 2026, 2:41:36 PM | |
| test-HtmlFileTest.html | 8 kB | 14 Jan 2026, 2:41:36 PM | |
| test-IdentifyFileTest.html | 19 kB | 14 Jan 2026, 2:41:35 PM | |
| test-JSONFileTest.html | 13 kB | 14 Jan 2026, 2:41:36 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 14 Jan 2026, 2:41:36 PM | |
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| test-NewickFileTests.html | 10 kB | 14 Jan 2026, 2:41:36 PM | |
| test-PfamFormatInputTest.html | 9 kB | 14 Jan 2026, 2:41:36 PM | |
| test-PhylipFileTests.html | 10 kB | 14 Jan 2026, 2:41:35 PM | |
| test-RNAMLfileTest.html | 9 kB | 14 Jan 2026, 2:41:36 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 14 Jan 2026, 2:41:36 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 14 Jan 2026, 2:41:36 PM | |
| test-StockholmFileTest.html | 14 kB | 14 Jan 2026, 2:41:35 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 14 Jan 2026, 2:41:36 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 14 Jan 2026, 2:41:36 PM | |
| test-pkg-summary.html | 36 kB | 14 Jan 2026, 2:41:36 PM | |
| testsrc-pkg-summary.html | 48 kB | 14 Jan 2026, 2:41:51 PM | |
| top-risks.html | 34 kB | 14 Jan 2026, 2:41:51 PM |