Build and run tests under Java 11
None
Build files
Jalview Builds - Gradle Develop Build - citation.cff - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
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cache | 11 Feb 2026, 11:31:44 AM | |
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exceptions | 11 Feb 2026, 11:31:31 AM | |
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gff | 11 Feb 2026, 11:31:44 AM | |
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packed | 11 Feb 2026, 11:32:01 AM | |
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vamsas | 11 Feb 2026, 11:31:26 AM | |
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vcf | 11 Feb 2026, 11:31:43 AM | |
| A3mFile.html | 58 kB | 11 Feb 2026, 11:31:27 AM | |
| A3mFile.js | 0.9 kB | 11 Feb 2026, 11:31:27 AM | |
| AMSAFile.html | 80 kB | 11 Feb 2026, 11:31:27 AM | |
| AMSAFile.js | 1 kB | 11 Feb 2026, 11:31:27 AM | |
| AlignFile.html | 706 kB | 11 Feb 2026, 11:31:27 AM | |
| AlignFile.js | 223 kB | 11 Feb 2026, 11:31:27 AM | |
| AlignmentFileReaderI.html | 36 kB | 11 Feb 2026, 11:31:27 AM | |
| AlignmentFileReaderI.js | 0.6 kB | 11 Feb 2026, 11:31:27 AM | |
| AlignmentFileWriterI.html | 34 kB | 11 Feb 2026, 11:31:27 AM | |
| AlignmentFileWriterI.js | 0.6 kB | 11 Feb 2026, 11:31:27 AM | |
| AlignmentProperties.html | 94 kB | 11 Feb 2026, 11:31:27 AM | |
| AlignmentProperties.js | 1 kB | 11 Feb 2026, 11:31:27 AM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_19w.html | 9 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_7l.html | 42 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_th.html | 24 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_yd.html | 171 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotationExporterTest.html | 59 kB | 11 Feb 2026, 11:31:29 AM | |
| AnnotationExporterTest.js | 1 kB | 11 Feb 2026, 11:31:29 AM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_nc.html | 115 kB | 11 Feb 2026, 11:31:29 AM | |
| AnnotationFile.html | 1.01 MB | 11 Feb 2026, 11:31:27 AM | |
| AnnotationFile.js | 60 kB | 11 Feb 2026, 11:31:27 AM | |
| AnnotationFileIOTest.html | 241 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotationFileIOTest.js | 5 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_c4.html | 40 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_17k.html | 116 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotationFileIOTest_testCalcIdRestore_op.html | 108 kB | 11 Feb 2026, 11:31:30 AM | |
| AnnotationFileIOTest_testProviderRestore_v8.html | 116 kB | 11 Feb 2026, 11:31:30 AM | |
| AppletFormatAdapter.html | 680 kB | 11 Feb 2026, 11:31:27 AM | |
| AppletFormatAdapter.js | 130 kB | 11 Feb 2026, 11:31:27 AM | |
| BLCFile.html | 153 kB | 11 Feb 2026, 11:31:28 AM | |
| BLCFile.js | 3 kB | 11 Feb 2026, 11:31:28 AM | |
| BackupFilenameFilter.html | 68 kB | 11 Feb 2026, 11:31:27 AM | |
| BackupFilenameFilter.js | 4 kB | 11 Feb 2026, 11:31:27 AM | |
| BackupFilenameParts.html | 129 kB | 11 Feb 2026, 11:31:27 AM | |
| BackupFilenameParts.js | 7 kB | 11 Feb 2026, 11:31:27 AM | |
| BackupFiles.html | 600 kB | 11 Feb 2026, 11:31:27 AM | |
| BackupFiles.js | 59 kB | 11 Feb 2026, 11:31:27 AM | |
| BackupFilesPresetEntry.html | 155 kB | 11 Feb 2026, 11:31:27 AM | |
| BackupFilesPresetEntry.js | 16 kB | 11 Feb 2026, 11:31:27 AM | |
| BackupFilesTest.html | 296 kB | 11 Feb 2026, 11:31:30 AM | |
| BackupFilesTest.js | 10 kB | 11 Feb 2026, 11:31:30 AM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_w2.html | 93 kB | 11 Feb 2026, 11:31:30 AM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_124.html | 115 kB | 11 Feb 2026, 11:31:30 AM | |
| BackupFilesTest_backupsEnabledRollMaxTest_c2.html | 115 kB | 11 Feb 2026, 11:31:30 AM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_do.html | 93 kB | 11 Feb 2026, 11:31:30 AM | |
| BackupFilesTest_noBackupsEnabledTest_ix.html | 115 kB | 11 Feb 2026, 11:31:30 AM | |
| BioJsHTMLOutput.html | 278 kB | 11 Feb 2026, 11:31:27 AM | |
| BioJsHTMLOutput.js | 73 kB | 11 Feb 2026, 11:31:27 AM | |
| BioJsHTMLOutputTest.html | 107 kB | 11 Feb 2026, 11:31:28 AM | |
| BioJsHTMLOutputTest.js | 2 kB | 11 Feb 2026, 11:31:28 AM | |
| BioJsHTMLOutputTest_expectedNullPointerException_yk.html | 8 kB | 11 Feb 2026, 11:31:28 AM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_7i.html | 8 kB | 11 Feb 2026, 11:31:28 AM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_bb.html | 23 kB | 11 Feb 2026, 11:31:28 AM | |
| ClustalFile.html | 158 kB | 11 Feb 2026, 11:31:27 AM | |
| ClustalFile.js | 6 kB | 11 Feb 2026, 11:31:27 AM | |
| ClustalFileTest.html | 65 kB | 11 Feb 2026, 11:31:30 AM | |
| ClustalFileTest.js | 1 kB | 11 Feb 2026, 11:31:30 AM | |
| ClustalFileTest_testParse_noNumbering_14b.html | 14 kB | 11 Feb 2026, 11:31:30 AM | |
| ClustalFileTest_testParse_withNumbering_17h.html | 14 kB | 11 Feb 2026, 11:31:30 AM | |
| CrossRef2xmlTests.html | 327 kB | 11 Feb 2026, 11:31:28 AM | |
| CrossRef2xmlTests.js | 4 kB | 11 Feb 2026, 11:31:28 AM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_18g.html | 182 kB | 11 Feb 2026, 11:31:28 AM | |
| DBRefFile.html | 43 kB | 11 Feb 2026, 11:31:27 AM | |
| DBRefFile.js | 0.6 kB | 11 Feb 2026, 11:31:27 AM | |
| DataSourceType.html | 269 kB | 11 Feb 2026, 11:31:27 AM | |
| DataSourceType.js | 25 kB | 11 Feb 2026, 11:31:27 AM | |
| EMBLLikeFlatFile.html | 429 kB | 11 Feb 2026, 11:31:27 AM | |
| EMBLLikeFlatFile.js | 17 kB | 11 Feb 2026, 11:31:27 AM | |
| EmblFlatFile.html | 134 kB | 11 Feb 2026, 11:31:27 AM | |
| EmblFlatFile.js | 4 kB | 11 Feb 2026, 11:31:27 AM | |
| EmblFlatFileTest.html | 229 kB | 11 Feb 2026, 11:31:30 AM | |
| EmblFlatFileTest.js | 5 kB | 11 Feb 2026, 11:31:30 AM | |
| EmblFlatFileTest_testAdjustForProteinLength_1a8.html | 12 kB | 11 Feb 2026, 11:31:30 AM | |
| EmblFlatFileTest_testParseToRNA_2w.html | 22 kB | 11 Feb 2026, 11:31:30 AM | |
| EmblFlatFileTest_testParse_15p.html | 23 kB | 11 Feb 2026, 11:31:30 AM | |
| EmblFlatFileTest_testParse_codonStartNot1_1bm.html | 8 kB | 11 Feb 2026, 11:31:30 AM | |
| EmblFlatFileTest_testParse_noUniprotXref_6o.html | 22 kB | 11 Feb 2026, 11:31:30 AM | |
| EmblFlatFileTest_testRemoveQuotes_100.html | 12 kB | 11 Feb 2026, 11:31:30 AM | |
| FastaFile.html | 428 kB | 11 Feb 2026, 11:31:28 AM | |
| FastaFile.js | 112 kB | 11 Feb 2026, 11:31:28 AM | |
| FeaturesFile.html | 765 kB | 11 Feb 2026, 11:31:27 AM | |
| FeaturesFile.js | 28 kB | 11 Feb 2026, 11:31:27 AM | |
| FeaturesFileTest.html | 522 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest.js | 13 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_readGff3File_11p.html | 36 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_simpleGff3FileClass_16z.html | 35 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_simpleGff3FileLoader_1aa.html | 109 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_d7.html | 34 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testOutputFeatureFilters_gz.html | 14 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testParseFilters_f4.html | 22 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testParse_19e.html | 117 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_15d.html | 105 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testParse_mixedJalviewGff_pj.html | 121 kB | 11 Feb 2026, 11:31:30 AM | |
| FeaturesFileTest_testParse_pureGff3_6a.html | 98 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testPrintGffFormat_162.html | 117 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_du.html | 118 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testPrintJalviewFormat_wc.html | 111 kB | 11 Feb 2026, 11:31:29 AM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_187.html | 119 kB | 11 Feb 2026, 11:31:29 AM | |
| FileFormat.html | 834 kB | 11 Feb 2026, 11:31:27 AM | |
| FileFormat.js | 83 kB | 11 Feb 2026, 11:31:27 AM | |
| FileFormatException.html | 58 kB | 11 Feb 2026, 11:31:27 AM | |
| FileFormatException.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| FileFormatI.html | 47 kB | 11 Feb 2026, 11:31:27 AM | |
| FileFormatI.js | 0.7 kB | 11 Feb 2026, 11:31:27 AM | |
| FileFormats.html | 481 kB | 11 Feb 2026, 11:31:27 AM | |
| FileFormats.js | 74 kB | 11 Feb 2026, 11:31:27 AM | |
| FileFormatsTest.html | 137 kB | 11 Feb 2026, 11:31:29 AM | |
| FileFormatsTest.js | 3 kB | 11 Feb 2026, 11:31:29 AM | |
| FileFormatsTest_testDeregisterFileFormat_il.html | 9 kB | 11 Feb 2026, 11:31:30 AM | |
| FileFormatsTest_testForName_vy.html | 9 kB | 11 Feb 2026, 11:31:30 AM | |
| FileFormatsTest_testGetFormats_1cd.html | 9 kB | 11 Feb 2026, 11:31:30 AM | |
| FileFormatsTest_testGetReadableFormats_12i.html | 9 kB | 11 Feb 2026, 11:31:30 AM | |
| FileFormatsTest_testGetWritableFormats_1b2.html | 9 kB | 11 Feb 2026, 11:31:30 AM | |
| FileFormatsTest_testIsIdentifiable_mp.html | 9 kB | 11 Feb 2026, 11:31:30 AM | |
| FileFormatsTest_testRegisterFileFormat_oi.html | 9 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester.html | 129 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester.js | 3 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester_testGzipIo_10q.html | 13 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester_testGziplocalFileIO_40.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester_testIsGzipInputStream_2k.html | 12 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester_testNonGzipURLIO_r4.html | 12 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester_testNonGziplocalFileIO_5j.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester_testStarsInFasta1_u.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| FileIOTester_testStarsInFasta2_ce.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| FileLoader.html | 601 kB | 11 Feb 2026, 11:31:27 AM | |
| FileLoader.js | 250 kB | 11 Feb 2026, 11:31:27 AM | |
| FileLoaderTest.html | 37 kB | 11 Feb 2026, 11:31:30 AM | |
| FileLoaderTest.js | 0.6 kB | 11 Feb 2026, 11:31:30 AM | |
| FileParse.html | 926 kB | 11 Feb 2026, 11:31:27 AM | |
| FileParse.js | 339 kB | 11 Feb 2026, 11:31:27 AM | |
| FormatAdapter.html | 458 kB | 11 Feb 2026, 11:31:27 AM | |
| FormatAdapter.js | 56 kB | 11 Feb 2026, 11:31:27 AM | |
| FormatAdapterTest.html | 112 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest.js | 5 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_10m.html | 24 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_12t.html | 23 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_174.html | 21 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_183.html | 23 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_18a.html | 21 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_1i.html | 22 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_b4.html | 21 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_ff.html | 31 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_gd.html | 22 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_gw.html | 50 kB | 11 Feb 2026, 11:31:29 AM | |
| FormatAdapterTest_testRoundTrip_sw.html | 23 kB | 11 Feb 2026, 11:31:29 AM | |
| GenBankFile.html | 121 kB | 11 Feb 2026, 11:31:27 AM | |
| GenBankFile.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| GenBankFileTest.html | 132 kB | 11 Feb 2026, 11:31:29 AM | |
| GenBankFileTest.js | 3 kB | 11 Feb 2026, 11:31:29 AM | |
| GenBankFileTest_testParse_mt.html | 20 kB | 11 Feb 2026, 11:31:29 AM | |
| HTMLOutput.html | 197 kB | 11 Feb 2026, 11:31:27 AM | |
| HTMLOutput.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| HtmlFile.html | 132 kB | 11 Feb 2026, 11:31:27 AM | |
| HtmlFile.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| HtmlFileTest.html | 39 kB | 11 Feb 2026, 11:31:30 AM | |
| HtmlFileTest.js | 0.6 kB | 11 Feb 2026, 11:31:30 AM | |
| HtmlSvgOutput.html | 173 kB | 11 Feb 2026, 11:31:27 AM | |
| HtmlSvgOutput.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| IdentifyFile.html | 590 kB | 11 Feb 2026, 11:31:27 AM | |
| IdentifyFile.js | 238 kB | 11 Feb 2026, 11:31:27 AM | |
| IdentifyFileTest.html | 149 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest.js | 5 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_147.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_14t.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_16d.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_19k.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_1bk.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_1d9.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_1dw.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_2j.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_4e.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_4r.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_58.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_70.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_7x.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_8u.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_a7.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_featureFile_if.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_lu.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_pg.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_si.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_vf.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_x8.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testIdentify_z6.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| IdentifyFileTest_testLooksLikeFeatureData_ry.html | 8 kB | 11 Feb 2026, 11:31:28 AM | |
| InputStreamParser.html | 44 kB | 11 Feb 2026, 11:31:27 AM | |
| InputStreamParser.js | 0.6 kB | 11 Feb 2026, 11:31:27 AM | |
| IntKeyStringValueEntry.html | 44 kB | 11 Feb 2026, 11:31:27 AM | |
| IntKeyStringValueEntry.js | 0.7 kB | 11 Feb 2026, 11:31:27 AM | |
| JPredFile.html | 220 kB | 11 Feb 2026, 11:31:27 AM | |
| JPredFile.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| JSONFile.html | 508 kB | 11 Feb 2026, 11:31:27 AM | |
| JSONFile.js | 14 kB | 11 Feb 2026, 11:31:27 AM | |
| JSONFileTest.html | 364 kB | 11 Feb 2026, 11:31:28 AM | |
| JSONFileTest.js | 6 kB | 11 Feb 2026, 11:31:28 AM | |
| JSONFileTest_colorSchemeTest_kp.html | 8 kB | 11 Feb 2026, 11:31:29 AM | |
| JSONFileTest_hiddenColsTest_19x.html | 10 kB | 11 Feb 2026, 11:31:28 AM | |
| JSONFileTest_hiddenSeqsTest_1a2.html | 8 kB | 11 Feb 2026, 11:31:29 AM | |
| JSONFileTest_isShowSeqFeaturesSet_yu.html | 8 kB | 11 Feb 2026, 11:31:29 AM | |
| JSONFileTest_roundTripTest_jq.html | 7 kB | 11 Feb 2026, 11:31:29 AM | |
| JSONFileTest_testAnnotationParsed_vm.html | 8 kB | 11 Feb 2026, 11:31:29 AM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_13t.html | 108 kB | 11 Feb 2026, 11:31:29 AM | |
| JSONFileTest_testGrpParsed_colourNone_k0.html | 122 kB | 11 Feb 2026, 11:31:28 AM | |
| JSONFileTest_testGrpParsed_nq.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JSONFileTest_testSeqParsed_a9.html | 12 kB | 11 Feb 2026, 11:31:28 AM | |
| Jalview2xmlBase.html | 78 kB | 11 Feb 2026, 11:31:29 AM | |
| Jalview2xmlBase.js | 1 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewExportPropertiesTests.html | 71 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewExportPropertiesTests.js | 1 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_12.html | 117 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooser.html | 643 kB | 11 Feb 2026, 11:31:27 AM | |
| JalviewFileChooser.js | 143 kB | 11 Feb 2026, 11:31:27 AM | |
| JalviewFileChooserTest.html | 104 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest.js | 5 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12n.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_14i.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_191.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_19a.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1ao.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1c.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1r.html | 17 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_2b.html | 14 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_7o.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_88.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_9.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_dq.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_dx.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ef.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_gl.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_m6.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_tw.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_u9.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileFilter.html | 252 kB | 11 Feb 2026, 11:31:27 AM | |
| JalviewFileFilter.js | 68 kB | 11 Feb 2026, 11:31:27 AM | |
| JalviewFileView.html | 115 kB | 11 Feb 2026, 11:31:27 AM | |
| JalviewFileView.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| JalviewFileViewTest.html | 90 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileViewTest.js | 2 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileViewTest_testGetExtension_zw.html | 8 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileViewTest_testGetImageIcon_1bo.html | 9 kB | 11 Feb 2026, 11:31:29 AM | |
| JalviewFileViewTest_testGetTypeDescription_ty.html | 10 kB | 11 Feb 2026, 11:31:29 AM | |
| JnetAnnotationMaker.html | 126 kB | 11 Feb 2026, 11:31:27 AM | |
| JnetAnnotationMaker.js | 1 kB | 11 Feb 2026, 11:31:27 AM | |
| MSFfile.html | 212 kB | 11 Feb 2026, 11:31:28 AM | |
| MSFfile.js | 5 kB | 11 Feb 2026, 11:31:28 AM | |
| ModellerDescription.html | 236 kB | 11 Feb 2026, 11:31:27 AM | |
| ModellerDescription.js | 3 kB | 11 Feb 2026, 11:31:27 AM | |
| NewickFile.html | 529 kB | 11 Feb 2026, 11:31:27 AM | |
| NewickFile.js | 39 kB | 11 Feb 2026, 11:31:27 AM | |
| NewickFileTests.html | 121 kB | 11 Feb 2026, 11:31:29 AM | |
| NewickFileTests.js | 3 kB | 11 Feb 2026, 11:31:29 AM | |
| NewickFileTests_testTreeIO_7r.html | 36 kB | 11 Feb 2026, 11:31:29 AM | |
| NewickFileTests_testTreeIO_jn.html | 32 kB | 11 Feb 2026, 11:31:29 AM | |
| NewickFileTests_testTreeIO_js.html | 34 kB | 11 Feb 2026, 11:31:29 AM | |
| PContactPredictionFile.html | 101 kB | 11 Feb 2026, 11:31:27 AM | |
| PContactPredictionFile.js | 1 kB | 11 Feb 2026, 11:31:27 AM | |
| PDBFeatureSettings.html | 121 kB | 11 Feb 2026, 11:31:27 AM | |
| PDBFeatureSettings.js | 8 kB | 11 Feb 2026, 11:31:27 AM | |
| PIRFile.html | 120 kB | 11 Feb 2026, 11:31:27 AM | |
| PIRFile.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| PfamFile.html | 131 kB | 11 Feb 2026, 11:31:27 AM | |
| PfamFile.js | 8 kB | 11 Feb 2026, 11:31:27 AM | |
| PfamFormatInputTest.html | 56 kB | 11 Feb 2026, 11:31:30 AM | |
| PfamFormatInputTest.js | 1.0 kB | 11 Feb 2026, 11:31:30 AM | |
| PfamFormatInputTest_testPfamFormatNoLimits_le.html | 21 kB | 11 Feb 2026, 11:31:30 AM | |
| PfamFormatInputTest_testPfamFormatValidLimits_8h.html | 21 kB | 11 Feb 2026, 11:31:30 AM | |
| PhylipFile.html | 176 kB | 11 Feb 2026, 11:31:27 AM | |
| PhylipFile.js | 6 kB | 11 Feb 2026, 11:31:27 AM | |
| PhylipFileTests.html | 128 kB | 11 Feb 2026, 11:31:28 AM | |
| PhylipFileTests.js | 3 kB | 11 Feb 2026, 11:31:28 AM | |
| PhylipFileTests_testInterleavedDataExtraction_qx.html | 22 kB | 11 Feb 2026, 11:31:28 AM | |
| PhylipFileTests_testInterleavedIO_165.html | 30 kB | 11 Feb 2026, 11:31:28 AM | |
| PhylipFileTests_testSequentialDataExtraction_3h.html | 24 kB | 11 Feb 2026, 11:31:28 AM | |
| PhylipFileTests_testSequentialIO_zl.html | 25 kB | 11 Feb 2026, 11:31:28 AM | |
| PileUpfile.html | 112 kB | 11 Feb 2026, 11:31:27 AM | |
| PileUpfile.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| RNAMLfileTest.html | 66 kB | 11 Feb 2026, 11:31:30 AM | |
| RNAMLfileTest.js | 1 kB | 11 Feb 2026, 11:31:30 AM | |
| RNAMLfileTest_testRnamlSeqImport_td.html | 50 kB | 11 Feb 2026, 11:31:30 AM | |
| RNAMLfileTest_testRnamlToStockholmIO_14s.html | 56 kB | 11 Feb 2026, 11:31:30 AM | |
| RnamlFile.html | 145 kB | 11 Feb 2026, 11:31:27 AM | |
| RnamlFile.js | 3 kB | 11 Feb 2026, 11:31:27 AM | |
| ScoreMatrixFile.html | 266 kB | 11 Feb 2026, 11:31:27 AM | |
| ScoreMatrixFile.js | 24 kB | 11 Feb 2026, 11:31:27 AM | |
| ScoreMatrixFileTest.html | 334 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest.js | 7 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_ye.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_fw.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_rm.html | 12 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_7g.html | 12 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_q6.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_dd.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_bh.html | 12 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_3a.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_10y.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_3l.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_1a.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_16u.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_e7.html | 12 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_15z.html | 12 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_148.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_pw.html | 13 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_15b.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_hd.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_d2.html | 11 kB | 11 Feb 2026, 11:31:28 AM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_6d.html | 12 kB | 11 Feb 2026, 11:31:28 AM | |
| SequenceAnnotationReport.html | 632 kB | 11 Feb 2026, 11:31:27 AM | |
| SequenceAnnotationReport.js | 41 kB | 11 Feb 2026, 11:31:27 AM | |
| SequenceAnnotationReportTest.html | 309 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest.js | 7 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_tf.html | 15 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_12s.html | 26 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_xu.html | 9 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_1d5.html | 17 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_status_gs.html | 11 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_hw.html | 12 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_t7.html | 33 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_q3.html | 14 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_yq.html | 25 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_82.html | 23 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_f5.html | 26 kB | 11 Feb 2026, 11:31:29 AM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_1bd.html | 28 kB | 11 Feb 2026, 11:31:29 AM | |
| SimpleBlastFile.html | 152 kB | 11 Feb 2026, 11:31:27 AM | |
| SimpleBlastFile.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| StockholmFile.html | 675 kB | 11 Feb 2026, 11:31:27 AM | |
| StockholmFile.js | 60 kB | 11 Feb 2026, 11:31:27 AM | |
| StockholmFileTest.html | 515 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest.js | 20 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_jx.html | 67 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_dbrefOutput_kz.html | 42 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_descriptionLineOutput_16h.html | 39 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_detectWussBrackets_1dx.html | 7 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_198.html | 49 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_pfamFileDataExtraction_7b.html | 68 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_pfamFileIO_cr.html | 74 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_rfamFileIO_9k.html | 50 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_secondaryStructureForRNASequence_8k.html | 50 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_2r.html | 46 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_14r.html | 27 kB | 11 Feb 2026, 11:31:28 AM | |
| StockholmFileTest_testAnnotationEquivalence_w3.html | 12 kB | 11 Feb 2026, 11:31:28 AM | |
| StructureFile.html | 446 kB | 11 Feb 2026, 11:31:27 AM | |
| StructureFile.js | 97 kB | 11 Feb 2026, 11:31:27 AM | |
| TCoffeeScoreFile.html | 362 kB | 11 Feb 2026, 11:31:27 AM | |
| TCoffeeScoreFile.js | 15 kB | 11 Feb 2026, 11:31:27 AM | |
| TCoffeeScoreFileTest.html | 171 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest.js | 4 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest_testGetAsArray_116.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest_testGetAsList_s1.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_gm.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest_testHeightAndWidth_ck.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest_testParse_mv.html | 11 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest_testReadBlock_15w.html | 10 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest_testReadHeader_3t.html | 12 kB | 11 Feb 2026, 11:31:30 AM | |
| TCoffeeScoreFileTest_testWrongFile_vs.html | 10 kB | 11 Feb 2026, 11:31:30 AM | |
| VamsasAppDatastore.html | 1.26 MB | 11 Feb 2026, 11:31:27 AM | |
| VamsasAppDatastore.js | 13 kB | 11 Feb 2026, 11:31:27 AM | |
| WSWUBlastClient.html | 177 kB | 11 Feb 2026, 11:31:27 AM | |
| WSWUBlastClient.js | 2 kB | 11 Feb 2026, 11:31:27 AM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 11 Feb 2026, 11:31:30 AM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 11 Feb 2026, 11:31:30 AM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_14k.html | 113 kB | 11 Feb 2026, 11:31:30 AM | |
| pkg-summary.html | 86 kB | 11 Feb 2026, 11:31:30 AM | |
| quick-wins.html | 32 kB | 11 Feb 2026, 11:31:30 AM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 11 Feb 2026, 11:31:16 AM | |
| test-AnnotationExporterTest.html | 9 kB | 11 Feb 2026, 11:31:16 AM | |
| test-AnnotationFileIOTest.html | 10 kB | 11 Feb 2026, 11:31:16 AM | |
| test-BackupFilesTest.html | 11 kB | 11 Feb 2026, 11:31:16 AM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 11 Feb 2026, 11:31:16 AM | |
| test-ClustalFileTest.html | 9 kB | 11 Feb 2026, 11:31:16 AM | |
| test-CrossRef2xmlTests.html | 9 kB | 11 Feb 2026, 11:31:16 AM | |
| test-EmblFlatFileTest.html | 11 kB | 11 Feb 2026, 11:31:16 AM | |
| test-FeaturesFileTest.html | 15 kB | 11 Feb 2026, 11:31:16 AM | |
| test-FileFormatsTest.html | 12 kB | 11 Feb 2026, 11:31:16 AM | |
| test-FileIOTester.html | 12 kB | 11 Feb 2026, 11:31:16 AM | |
| test-FileLoaderTest.html | 8 kB | 11 Feb 2026, 11:31:16 AM | |
| test-FormatAdapterTest.html | 13 kB | 11 Feb 2026, 11:31:16 AM | |
| test-GenBankFileTest.html | 9 kB | 11 Feb 2026, 11:31:16 AM | |
| test-HtmlFileTest.html | 8 kB | 11 Feb 2026, 11:31:16 AM | |
| test-IdentifyFileTest.html | 19 kB | 11 Feb 2026, 11:31:16 AM | |
| test-JSONFileTest.html | 13 kB | 11 Feb 2026, 11:31:16 AM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 11 Feb 2026, 11:31:16 AM | |
| test-JalviewFileChooserTest.html | 17 kB | 11 Feb 2026, 11:31:16 AM | |
| test-JalviewFileViewTest.html | 10 kB | 11 Feb 2026, 11:31:16 AM | |
| test-NewickFileTests.html | 10 kB | 11 Feb 2026, 11:31:16 AM | |
| test-PfamFormatInputTest.html | 9 kB | 11 Feb 2026, 11:31:16 AM | |
| test-PhylipFileTests.html | 10 kB | 11 Feb 2026, 11:31:16 AM | |
| test-RNAMLfileTest.html | 9 kB | 11 Feb 2026, 11:31:16 AM | |
| test-ScoreMatrixFileTest.html | 19 kB | 11 Feb 2026, 11:31:16 AM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 11 Feb 2026, 11:31:16 AM | |
| test-StockholmFileTest.html | 14 kB | 11 Feb 2026, 11:31:16 AM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 11 Feb 2026, 11:31:16 AM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 11 Feb 2026, 11:31:16 AM | |
| test-pkg-summary.html | 33 kB | 11 Feb 2026, 11:31:16 AM | |
| testsrc-pkg-summary.html | 46 kB | 11 Feb 2026, 11:31:30 AM | |
| top-risks.html | 33 kB | 11 Feb 2026, 11:31:30 AM |