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Build files
Jalview Builds - Gradle Develop Build - development-JAL-4576_ligysis - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 11 Jan 2026, 2:37:46 AM | |
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exceptions | 11 Jan 2026, 2:37:31 AM | |
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gff | 11 Jan 2026, 2:37:45 AM | |
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packed | 11 Jan 2026, 2:38:04 AM | |
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vamsas | 11 Jan 2026, 2:37:24 AM | |
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vcf | 11 Jan 2026, 2:37:44 AM | |
| A3mFile.html | 58 kB | 11 Jan 2026, 2:37:26 AM | |
| A3mFile.js | 0.9 kB | 11 Jan 2026, 2:37:26 AM | |
| AMSAFile.html | 80 kB | 11 Jan 2026, 2:37:25 AM | |
| AMSAFile.js | 1 kB | 11 Jan 2026, 2:37:25 AM | |
| AlignFile.html | 716 kB | 11 Jan 2026, 2:37:26 AM | |
| AlignFile.js | 219 kB | 11 Jan 2026, 2:37:26 AM | |
| AlignmentFileReaderI.html | 35 kB | 11 Jan 2026, 2:37:25 AM | |
| AlignmentFileReaderI.js | 0.6 kB | 11 Jan 2026, 2:37:25 AM | |
| AlignmentFileWriterI.html | 33 kB | 11 Jan 2026, 2:37:26 AM | |
| AlignmentFileWriterI.js | 0.6 kB | 11 Jan 2026, 2:37:26 AM | |
| AlignmentProperties.html | 94 kB | 11 Jan 2026, 2:37:25 AM | |
| AlignmentProperties.js | 1 kB | 11 Jan 2026, 2:37:25 AM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_x4.html | 44 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_j.html | 25 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_kt.html | 21 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_1f4.html | 185 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotationExporterTest.html | 59 kB | 11 Jan 2026, 2:37:27 AM | |
| AnnotationExporterTest.js | 1 kB | 11 Jan 2026, 2:37:27 AM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_7v.html | 125 kB | 11 Jan 2026, 2:37:27 AM | |
| AnnotationFile.html | 1.03 MB | 11 Jan 2026, 2:37:25 AM | |
| AnnotationFile.js | 61 kB | 11 Jan 2026, 2:37:25 AM | |
| AnnotationFileIOTest.html | 241 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotationFileIOTest.js | 5 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_m2.html | 39 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_7u.html | 110 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotationFileIOTest_testCalcIdRestore_xi.html | 126 kB | 11 Jan 2026, 2:37:29 AM | |
| AnnotationFileIOTest_testProviderRestore_9.html | 116 kB | 11 Jan 2026, 2:37:29 AM | |
| AppletFormatAdapter.html | 668 kB | 11 Jan 2026, 2:37:25 AM | |
| AppletFormatAdapter.js | 123 kB | 11 Jan 2026, 2:37:25 AM | |
| BLCFile.html | 153 kB | 11 Jan 2026, 2:37:26 AM | |
| BLCFile.js | 3 kB | 11 Jan 2026, 2:37:26 AM | |
| BSMLFile.html | 135 kB | 11 Jan 2026, 2:37:26 AM | |
| BSMLFile.js | 2 kB | 11 Jan 2026, 2:37:26 AM | |
| BSMLFileTest.html | 54 kB | 11 Jan 2026, 2:37:26 AM | |
| BSMLFileTest.js | 1.0 kB | 11 Jan 2026, 2:37:26 AM | |
| BSMLFileTest_testParse_BSML_1fb.html | 72 kB | 11 Jan 2026, 2:37:26 AM | |
| BackupFilenameFilter.html | 68 kB | 11 Jan 2026, 2:37:25 AM | |
| BackupFilenameFilter.js | 3 kB | 11 Jan 2026, 2:37:25 AM | |
| BackupFilenameParts.html | 129 kB | 11 Jan 2026, 2:37:25 AM | |
| BackupFilenameParts.js | 7 kB | 11 Jan 2026, 2:37:25 AM | |
| BackupFiles.html | 598 kB | 11 Jan 2026, 2:37:25 AM | |
| BackupFiles.js | 58 kB | 11 Jan 2026, 2:37:25 AM | |
| BackupFilesPresetEntry.html | 155 kB | 11 Jan 2026, 2:37:25 AM | |
| BackupFilesPresetEntry.js | 16 kB | 11 Jan 2026, 2:37:25 AM | |
| BackupFilesTest.html | 296 kB | 11 Jan 2026, 2:37:29 AM | |
| BackupFilesTest.js | 9 kB | 11 Jan 2026, 2:37:29 AM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_1f.html | 122 kB | 11 Jan 2026, 2:37:29 AM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_ad.html | 122 kB | 11 Jan 2026, 2:37:29 AM | |
| BackupFilesTest_backupsEnabledRollMaxTest_g9.html | 122 kB | 11 Jan 2026, 2:37:29 AM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_b4.html | 122 kB | 11 Jan 2026, 2:37:29 AM | |
| BackupFilesTest_noBackupsEnabledTest_1k6.html | 107 kB | 11 Jan 2026, 2:37:29 AM | |
| BioJsHTMLOutput.html | 280 kB | 11 Jan 2026, 2:37:26 AM | |
| BioJsHTMLOutput.js | 73 kB | 11 Jan 2026, 2:37:26 AM | |
| BioJsHTMLOutputTest.html | 107 kB | 11 Jan 2026, 2:37:26 AM | |
| BioJsHTMLOutputTest.js | 2 kB | 11 Jan 2026, 2:37:26 AM | |
| BioJsHTMLOutputTest_expectedNullPointerException_gg.html | 8 kB | 11 Jan 2026, 2:37:26 AM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_6.html | 8 kB | 11 Jan 2026, 2:37:26 AM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_18z.html | 16 kB | 11 Jan 2026, 2:37:26 AM | |
| ClustalFile.html | 158 kB | 11 Jan 2026, 2:37:26 AM | |
| ClustalFile.js | 6 kB | 11 Jan 2026, 2:37:26 AM | |
| ClustalFileTest.html | 65 kB | 11 Jan 2026, 2:37:28 AM | |
| ClustalFileTest.js | 1 kB | 11 Jan 2026, 2:37:28 AM | |
| ClustalFileTest_testParse_noNumbering_ka.html | 14 kB | 11 Jan 2026, 2:37:28 AM | |
| ClustalFileTest_testParse_withNumbering_1er.html | 14 kB | 11 Jan 2026, 2:37:28 AM | |
| CountReader.html | 48 kB | 11 Jan 2026, 2:37:26 AM | |
| CountReader.js | 0.7 kB | 11 Jan 2026, 2:37:26 AM | |
| CrossRef2xmlTests.html | 327 kB | 11 Jan 2026, 2:37:26 AM | |
| CrossRef2xmlTests.js | 4 kB | 11 Jan 2026, 2:37:26 AM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_n2.html | 217 kB | 11 Jan 2026, 2:37:26 AM | |
| DBRefFile.html | 43 kB | 11 Jan 2026, 2:37:26 AM | |
| DBRefFile.js | 0.6 kB | 11 Jan 2026, 2:37:26 AM | |
| DataSourceType.html | 254 kB | 11 Jan 2026, 2:37:25 AM | |
| DataSourceType.js | 23 kB | 11 Jan 2026, 2:37:25 AM | |
| EMBLLikeFlatFile.html | 429 kB | 11 Jan 2026, 2:37:25 AM | |
| EMBLLikeFlatFile.js | 17 kB | 11 Jan 2026, 2:37:25 AM | |
| EmblFlatFile.html | 134 kB | 11 Jan 2026, 2:37:25 AM | |
| EmblFlatFile.js | 4 kB | 11 Jan 2026, 2:37:25 AM | |
| EmblFlatFileTest.html | 229 kB | 11 Jan 2026, 2:37:28 AM | |
| EmblFlatFileTest.js | 5 kB | 11 Jan 2026, 2:37:28 AM | |
| EmblFlatFileTest_testAdjustForProteinLength_i2.html | 17 kB | 11 Jan 2026, 2:37:28 AM | |
| EmblFlatFileTest_testParseToRNA_1ab.html | 27 kB | 11 Jan 2026, 2:37:28 AM | |
| EmblFlatFileTest_testParse_codonStartNot1_u.html | 17 kB | 11 Jan 2026, 2:37:28 AM | |
| EmblFlatFileTest_testParse_noUniprotXref_5r.html | 26 kB | 11 Jan 2026, 2:37:28 AM | |
| EmblFlatFileTest_testParse_od.html | 36 kB | 11 Jan 2026, 2:37:28 AM | |
| EmblFlatFileTest_testRemoveQuotes_1bd.html | 17 kB | 11 Jan 2026, 2:37:28 AM | |
| FastaFile.html | 422 kB | 11 Jan 2026, 2:37:26 AM | |
| FastaFile.js | 109 kB | 11 Jan 2026, 2:37:26 AM | |
| FeaturesFile.html | 765 kB | 11 Jan 2026, 2:37:25 AM | |
| FeaturesFile.js | 27 kB | 11 Jan 2026, 2:37:25 AM | |
| FeaturesFileTest.html | 522 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest.js | 13 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_readGff3File_go.html | 40 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_simpleGff3FileClass_n7.html | 37 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_simpleGff3FileLoader_1f6.html | 113 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_u9.html | 35 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testOutputFeatureFilters_1io.html | 14 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testParseFilters_o6.html | 14 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testParse_1cd.html | 138 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_cc.html | 107 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testParse_mixedJalviewGff_43.html | 127 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testParse_pureGff3_4a.html | 127 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testPrintGffFormat_1f1.html | 131 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_g.html | 132 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testPrintJalviewFormat_f1.html | 130 kB | 11 Jan 2026, 2:37:28 AM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_wk.html | 114 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormat.html | 959 kB | 11 Jan 2026, 2:37:26 AM | |
| FileFormat.js | 91 kB | 11 Jan 2026, 2:37:26 AM | |
| FileFormatException.html | 58 kB | 11 Jan 2026, 2:37:26 AM | |
| FileFormatException.js | 2 kB | 11 Jan 2026, 2:37:26 AM | |
| FileFormatI.html | 47 kB | 11 Jan 2026, 2:37:25 AM | |
| FileFormatI.js | 0.7 kB | 11 Jan 2026, 2:37:25 AM | |
| FileFormats.html | 587 kB | 11 Jan 2026, 2:37:25 AM | |
| FileFormats.js | 83 kB | 11 Jan 2026, 2:37:25 AM | |
| FileFormatsTest.html | 137 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormatsTest.js | 3 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormatsTest_testDeregisterFileFormat_19z.html | 14 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormatsTest_testForName_6j.html | 18 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormatsTest_testGetFormats_dh.html | 25 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormatsTest_testGetReadableFormats_r1.html | 10 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormatsTest_testGetWritableFormats_1fz.html | 10 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormatsTest_testIsIdentifiable_ri.html | 10 kB | 11 Jan 2026, 2:37:28 AM | |
| FileFormatsTest_testRegisterFileFormat_mn.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester.html | 130 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester.js | 3 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester_testGzipIo_1es.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester_testGziplocalFileIO_gr.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester_testIsGzipInputStream_5m.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester_testNonGzipURLIO_qo.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester_testNonGziplocalFileIO_m3.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester_testStarsInFasta1_1kd.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| FileIOTester_testStarsInFasta2_10g.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| FileLoader.html | 613 kB | 11 Jan 2026, 2:37:26 AM | |
| FileLoader.js | 240 kB | 11 Jan 2026, 2:37:26 AM | |
| FileLoaderTest.html | 58 kB | 11 Jan 2026, 2:37:29 AM | |
| FileLoaderTest.js | 1.0 kB | 11 Jan 2026, 2:37:29 AM | |
| FileLoaderTest_testUpdateRecentlyOpened_nd.html | 14 kB | 11 Jan 2026, 2:37:29 AM | |
| FileParse.html | 929 kB | 11 Jan 2026, 2:37:25 AM | |
| FileParse.js | 333 kB | 11 Jan 2026, 2:37:25 AM | |
| FormatAdapter.html | 446 kB | 11 Jan 2026, 2:37:25 AM | |
| FormatAdapter.js | 54 kB | 11 Jan 2026, 2:37:25 AM | |
| FormatAdapterTest.html | 118 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest.js | 6 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_12a.html | 22 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_14q.html | 35 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_1an.html | 23 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_1k8.html | 21 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_2q.html | 22 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_2t.html | 33 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_51.html | 32 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_6c.html | 22 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_pk.html | 24 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_pl.html | 23 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_qg.html | 23 kB | 11 Jan 2026, 2:37:27 AM | |
| FormatAdapterTest_testRoundTrip_va.html | 23 kB | 11 Jan 2026, 2:37:27 AM | |
| GenBankFile.html | 121 kB | 11 Jan 2026, 2:37:25 AM | |
| GenBankFile.js | 2 kB | 11 Jan 2026, 2:37:25 AM | |
| GenBankFileTest.html | 133 kB | 11 Jan 2026, 2:37:27 AM | |
| GenBankFileTest.js | 3 kB | 11 Jan 2026, 2:37:27 AM | |
| GenBankFileTest_testParse_1hk.html | 20 kB | 11 Jan 2026, 2:37:27 AM | |
| HMMFile.html | 406 kB | 11 Jan 2026, 2:37:25 AM | |
| HMMFile.js | 22 kB | 11 Jan 2026, 2:37:25 AM | |
| HMMFileTest.html | 318 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest.js | 7 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testAppendModelAsString_4o.html | 10 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testAppendProperties_16p.html | 9 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testFillList_10p.html | 8 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testParseAnnotations_1jh.html | 17 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testParseHeaderLines_amino_dg.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testParseHeaderLines_dna_16j.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testParseModel_1k0.html | 15 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testParse_m6.html | 14 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testParse_minimalFile_195.html | 18 kB | 11 Jan 2026, 2:37:28 AM | |
| HMMFileTest_testPrint_roundTrip_2y.html | 16 kB | 11 Jan 2026, 2:37:28 AM | |
| HTMLOutput.html | 197 kB | 11 Jan 2026, 2:37:26 AM | |
| HTMLOutput.js | 3 kB | 11 Jan 2026, 2:37:26 AM | |
| HtmlFile.html | 132 kB | 11 Jan 2026, 2:37:26 AM | |
| HtmlFile.js | 2 kB | 11 Jan 2026, 2:37:26 AM | |
| HtmlFileTest.html | 39 kB | 11 Jan 2026, 2:37:28 AM | |
| HtmlFileTest.js | 0.6 kB | 11 Jan 2026, 2:37:28 AM | |
| HtmlSvgOutput.html | 173 kB | 11 Jan 2026, 2:37:25 AM | |
| HtmlSvgOutput.js | 2 kB | 11 Jan 2026, 2:37:25 AM | |
| IdentifyFile.html | 580 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFile.js | 228 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest.html | 149 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest.js | 5 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_12.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_161.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_16u.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_2f.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_7z.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_bf.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_c.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_cv.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_d4.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_featureFile_au.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_h1.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_kc.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_ks.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_p0.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_r4.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_t.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_t3.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_tk.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_ut.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_w8.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_wa.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testIdentify_ya.html | 11 kB | 11 Jan 2026, 2:37:26 AM | |
| IdentifyFileTest_testLooksLikeFeatureData_1j2.html | 8 kB | 11 Jan 2026, 2:37:26 AM | |
| InputStreamParser.html | 44 kB | 11 Jan 2026, 2:37:26 AM | |
| InputStreamParser.js | 0.6 kB | 11 Jan 2026, 2:37:26 AM | |
| IntKeyStringValueEntry.html | 40 kB | 11 Jan 2026, 2:37:26 AM | |
| IntKeyStringValueEntry.js | 0.6 kB | 11 Jan 2026, 2:37:26 AM | |
| JPredFile.html | 233 kB | 11 Jan 2026, 2:37:26 AM | |
| JPredFile.js | 6 kB | 11 Jan 2026, 2:37:26 AM | |
| JSONFile.html | 508 kB | 11 Jan 2026, 2:37:25 AM | |
| JSONFile.js | 14 kB | 11 Jan 2026, 2:37:25 AM | |
| JSONFileTest.html | 364 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest.js | 6 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_colorSchemeTest_1fd.html | 8 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_hiddenColsTest_jc.html | 10 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_hiddenSeqsTest_1af.html | 8 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_isShowSeqFeaturesSet_18y.html | 8 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_roundTripTest_1kq.html | 7 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_testAnnotationParsed_17h.html | 8 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_hb.html | 135 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_testGrpParsed_colourNone_1fn.html | 126 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_testGrpParsed_se.html | 10 kB | 11 Jan 2026, 2:37:27 AM | |
| JSONFileTest_testSeqParsed_j2.html | 22 kB | 11 Jan 2026, 2:37:27 AM | |
| Jalview2xmlBase.html | 78 kB | 11 Jan 2026, 2:37:27 AM | |
| Jalview2xmlBase.js | 1 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewExportPropertiesTests.html | 71 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewExportPropertiesTests.js | 1 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_1c4.html | 117 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileChooser.html | 526 kB | 11 Jan 2026, 2:37:25 AM | |
| JalviewFileChooser.js | 8 kB | 11 Jan 2026, 2:37:25 AM | |
| JalviewFileChooserTest.html | 101 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileChooserTest.js | 5 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_143.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1fl.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_3k.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_cn.html | 13 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fb.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_gm.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_h7.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i3.html | 20 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i8.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ly.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_op.html | 13 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_pg.html | 16 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_rz.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ue.html | 13 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_vf.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_zj.html | 12 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileFilter.html | 145 kB | 11 Jan 2026, 2:37:26 AM | |
| JalviewFileFilter.js | 2 kB | 11 Jan 2026, 2:37:26 AM | |
| JalviewFileView.html | 115 kB | 11 Jan 2026, 2:37:25 AM | |
| JalviewFileView.js | 2 kB | 11 Jan 2026, 2:37:25 AM | |
| JalviewFileViewTest.html | 90 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileViewTest.js | 2 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileViewTest_testGetExtension_sq.html | 21 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileViewTest_testGetImageIcon_os.html | 44 kB | 11 Jan 2026, 2:37:27 AM | |
| JalviewFileViewTest_testGetTypeDescription_1ho.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| JnetAnnotationMaker.html | 140 kB | 11 Jan 2026, 2:37:25 AM | |
| JnetAnnotationMaker.js | 5 kB | 11 Jan 2026, 2:37:25 AM | |
| MSFfile.html | 212 kB | 11 Jan 2026, 2:37:26 AM | |
| MSFfile.js | 5 kB | 11 Jan 2026, 2:37:26 AM | |
| ModellerDescription.html | 243 kB | 11 Jan 2026, 2:37:25 AM | |
| ModellerDescription.js | 3 kB | 11 Jan 2026, 2:37:25 AM | |
| NewickFile.html | 567 kB | 11 Jan 2026, 2:37:26 AM | |
| NewickFile.js | 45 kB | 11 Jan 2026, 2:37:26 AM | |
| NewickFileTests.html | 121 kB | 11 Jan 2026, 2:37:27 AM | |
| NewickFileTests.js | 3 kB | 11 Jan 2026, 2:37:27 AM | |
| NewickFileTests_testTreeIO_12j.html | 59 kB | 11 Jan 2026, 2:37:27 AM | |
| NewickFileTests_testTreeIO_45.html | 58 kB | 11 Jan 2026, 2:37:27 AM | |
| NewickFileTests_testTreeIO_7l.html | 56 kB | 11 Jan 2026, 2:37:27 AM | |
| PContactPredictionFile.html | 101 kB | 11 Jan 2026, 2:37:25 AM | |
| PContactPredictionFile.js | 1 kB | 11 Jan 2026, 2:37:25 AM | |
| PDBFeatureSettings.html | 105 kB | 11 Jan 2026, 2:37:26 AM | |
| PDBFeatureSettings.js | 6 kB | 11 Jan 2026, 2:37:26 AM | |
| PIRFile.html | 120 kB | 11 Jan 2026, 2:37:25 AM | |
| PIRFile.js | 2 kB | 11 Jan 2026, 2:37:25 AM | |
| PfamFile.html | 131 kB | 11 Jan 2026, 2:37:25 AM | |
| PfamFile.js | 8 kB | 11 Jan 2026, 2:37:25 AM | |
| PfamFormatInputTest.html | 56 kB | 11 Jan 2026, 2:37:29 AM | |
| PfamFormatInputTest.js | 1.0 kB | 11 Jan 2026, 2:37:29 AM | |
| PfamFormatInputTest_testPfamFormatNoLimits_bb.html | 19 kB | 11 Jan 2026, 2:37:29 AM | |
| PfamFormatInputTest_testPfamFormatValidLimits_17u.html | 19 kB | 11 Jan 2026, 2:37:29 AM | |
| PhylipFile.html | 176 kB | 11 Jan 2026, 2:37:25 AM | |
| PhylipFile.js | 6 kB | 11 Jan 2026, 2:37:25 AM | |
| PhylipFileTests.html | 128 kB | 11 Jan 2026, 2:37:26 AM | |
| PhylipFileTests.js | 3 kB | 11 Jan 2026, 2:37:26 AM | |
| PhylipFileTests_testInterleavedDataExtraction_16l.html | 19 kB | 11 Jan 2026, 2:37:26 AM | |
| PhylipFileTests_testInterleavedIO_3q.html | 19 kB | 11 Jan 2026, 2:37:26 AM | |
| PhylipFileTests_testSequentialDataExtraction_hl.html | 19 kB | 11 Jan 2026, 2:37:26 AM | |
| PhylipFileTests_testSequentialIO_13b.html | 42 kB | 11 Jan 2026, 2:37:26 AM | |
| PileUpfile.html | 112 kB | 11 Jan 2026, 2:37:25 AM | |
| PileUpfile.js | 2 kB | 11 Jan 2026, 2:37:25 AM | |
| RNAMLfileTest.html | 66 kB | 11 Jan 2026, 2:37:28 AM | |
| RNAMLfileTest.js | 1 kB | 11 Jan 2026, 2:37:28 AM | |
| RNAMLfileTest_testRnamlSeqImport_tz.html | 55 kB | 11 Jan 2026, 2:37:28 AM | |
| RNAMLfileTest_testRnamlToStockholmIO_mk.html | 68 kB | 11 Jan 2026, 2:37:29 AM | |
| RnamlFile.html | 145 kB | 11 Jan 2026, 2:37:25 AM | |
| RnamlFile.js | 3 kB | 11 Jan 2026, 2:37:25 AM | |
| ScoreMatrixFile.html | 268 kB | 11 Jan 2026, 2:37:26 AM | |
| ScoreMatrixFile.js | 25 kB | 11 Jan 2026, 2:37:26 AM | |
| ScoreMatrixFileTest.html | 334 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest.js | 7 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_16.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_o2.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_c9.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_eb.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_vw.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_1e0.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
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| ScoreMatrixFileTest_testParseMatrix_headerMissing_lv.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_14b.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_aa.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_ht.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_ui.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_uq.html | 21 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_pf.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_gf.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_1gi.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
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| ScoreMatrixFileTest_testParse_ncbiFormat_2m.html | 15 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReport.html | 634 kB | 11 Jan 2026, 2:37:25 AM | |
| SequenceAnnotationReport.js | 40 kB | 11 Jan 2026, 2:37:25 AM | |
| SequenceAnnotationReportTest.html | 307 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest.js | 7 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_11m.html | 10 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_sg.html | 15 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_gu.html | 9 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_v7.html | 10 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_status_1p.html | 13 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_1ce.html | 10 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_ss.html | 32 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_196.html | 15 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_l3.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_1dr.html | 11 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_qc.html | 19 kB | 11 Jan 2026, 2:37:27 AM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_g4.html | 14 kB | 11 Jan 2026, 2:37:27 AM | |
| SimpleBlastFile.html | 152 kB | 11 Jan 2026, 2:37:25 AM | |
| SimpleBlastFile.js | 2 kB | 11 Jan 2026, 2:37:25 AM | |
| StockholmFile.html | 717 kB | 11 Jan 2026, 2:37:25 AM | |
| StockholmFile.js | 62 kB | 11 Jan 2026, 2:37:25 AM | |
| StockholmFileTest.html | 515 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest.js | 20 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_j6.html | 41 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_dbrefOutput_ay.html | 34 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_descriptionLineOutput_zv.html | 32 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_detectWussBrackets_1b2.html | 7 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_1j3.html | 41 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_pfamFileDataExtraction_18n.html | 65 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_pfamFileIO_1b6.html | 76 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_rfamFileIO_oh.html | 73 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_secondaryStructureForRNASequence_16h.html | 41 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_ra.html | 39 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_24.html | 26 kB | 11 Jan 2026, 2:37:26 AM | |
| StockholmFileTest_testAnnotationEquivalence_fi.html | 21 kB | 11 Jan 2026, 2:37:26 AM | |
| StructureFile.html | 428 kB | 11 Jan 2026, 2:37:25 AM | |
| StructureFile.js | 79 kB | 11 Jan 2026, 2:37:25 AM | |
| TCoffeeScoreFile.html | 362 kB | 11 Jan 2026, 2:37:25 AM | |
| TCoffeeScoreFile.js | 15 kB | 11 Jan 2026, 2:37:25 AM | |
| TCoffeeScoreFileTest.html | 171 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest.js | 4 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest_testGetAsArray_bm.html | 36 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest_testGetAsList_jj.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_u7.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest_testHeightAndWidth_z9.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest_testParse_c5.html | 11 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest_testReadBlock_16n.html | 10 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest_testReadHeader_1dx.html | 12 kB | 11 Jan 2026, 2:37:28 AM | |
| TCoffeeScoreFileTest_testWrongFile_6x.html | 10 kB | 11 Jan 2026, 2:37:28 AM | |
| VamsasAppDatastore.html | 1.27 MB | 11 Jan 2026, 2:37:25 AM | |
| VamsasAppDatastore.js | 13 kB | 11 Jan 2026, 2:37:25 AM | |
| WSWUBlastClient.html | 177 kB | 11 Jan 2026, 2:37:25 AM | |
| WSWUBlastClient.js | 2 kB | 11 Jan 2026, 2:37:25 AM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 11 Jan 2026, 2:37:29 AM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 11 Jan 2026, 2:37:29 AM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_4w.html | 111 kB | 11 Jan 2026, 2:37:29 AM | |
| pkg-summary.html | 89 kB | 11 Jan 2026, 2:37:29 AM | |
| quick-wins.html | 33 kB | 11 Jan 2026, 2:37:29 AM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 11 Jan 2026, 2:37:14 AM | |
| test-AnnotationExporterTest.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-AnnotationFileIOTest.html | 10 kB | 11 Jan 2026, 2:37:14 AM | |
| test-BSMLFileTest.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-BackupFilesTest.html | 11 kB | 11 Jan 2026, 2:37:14 AM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 11 Jan 2026, 2:37:14 AM | |
| test-ClustalFileTest.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-CrossRef2xmlTests.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-EmblFlatFileTest.html | 11 kB | 11 Jan 2026, 2:37:14 AM | |
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| test-FormatAdapterTest.html | 14 kB | 11 Jan 2026, 2:37:14 AM | |
| test-GenBankFileTest.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-HMMFileTest.html | 13 kB | 11 Jan 2026, 2:37:14 AM | |
| test-HtmlFileTest.html | 8 kB | 11 Jan 2026, 2:37:14 AM | |
| test-IdentifyFileTest.html | 19 kB | 11 Jan 2026, 2:37:14 AM | |
| test-JSONFileTest.html | 13 kB | 11 Jan 2026, 2:37:14 AM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-JalviewFileChooserTest.html | 16 kB | 11 Jan 2026, 2:37:14 AM | |
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| test-NewickFileTests.html | 10 kB | 11 Jan 2026, 2:37:14 AM | |
| test-PfamFormatInputTest.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-PhylipFileTests.html | 10 kB | 11 Jan 2026, 2:37:14 AM | |
| test-RNAMLfileTest.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-ScoreMatrixFileTest.html | 19 kB | 11 Jan 2026, 2:37:14 AM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 11 Jan 2026, 2:37:14 AM | |
| test-StockholmFileTest.html | 14 kB | 11 Jan 2026, 2:37:14 AM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 11 Jan 2026, 2:37:14 AM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 11 Jan 2026, 2:37:14 AM | |
| test-pkg-summary.html | 36 kB | 11 Jan 2026, 2:37:14 AM | |
| testsrc-pkg-summary.html | 48 kB | 11 Jan 2026, 2:37:29 AM | |
| top-risks.html | 34 kB | 11 Jan 2026, 2:37:29 AM |