None
Build files
Jalview Builds - Gradle Develop Build - feature-JAL-4366_JAL-4386_JAL-4435_3di_msafromstructure_msacomp - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
|
cache | 07 Jan 2026, 2:57:24 AM | |
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|
exceptions | 07 Jan 2026, 2:57:11 AM | |
|
|
gff | 07 Jan 2026, 2:57:24 AM | |
|
|
packed | 07 Jan 2026, 2:57:42 AM | |
|
|
vamsas | 07 Jan 2026, 2:57:04 AM | |
|
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vcf | 07 Jan 2026, 2:57:23 AM | |
| A3mFile.html | 58 kB | 07 Jan 2026, 2:57:05 AM | |
| A3mFile.js | 0.9 kB | 07 Jan 2026, 2:57:05 AM | |
| AMSAFile.html | 80 kB | 07 Jan 2026, 2:57:05 AM | |
| AMSAFile.js | 1 kB | 07 Jan 2026, 2:57:05 AM | |
| AlignFile.html | 721 kB | 07 Jan 2026, 2:57:05 AM | |
| AlignFile.js | 222 kB | 07 Jan 2026, 2:57:05 AM | |
| AlignmentFileReaderI.html | 35 kB | 07 Jan 2026, 2:57:05 AM | |
| AlignmentFileReaderI.js | 0.6 kB | 07 Jan 2026, 2:57:05 AM | |
| AlignmentFileWriterI.html | 33 kB | 07 Jan 2026, 2:57:05 AM | |
| AlignmentFileWriterI.js | 0.6 kB | 07 Jan 2026, 2:57:05 AM | |
| AlignmentProperties.html | 94 kB | 07 Jan 2026, 2:57:05 AM | |
| AlignmentProperties.js | 1 kB | 07 Jan 2026, 2:57:05 AM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_15x.html | 10 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_yk.html | 17 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_9z.html | 13 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_du.html | 183 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotationExporterTest.html | 59 kB | 07 Jan 2026, 2:57:07 AM | |
| AnnotationExporterTest.js | 1 kB | 07 Jan 2026, 2:57:07 AM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_176.html | 116 kB | 07 Jan 2026, 2:57:07 AM | |
| AnnotationFile.html | 1.03 MB | 07 Jan 2026, 2:57:05 AM | |
| AnnotationFile.js | 63 kB | 07 Jan 2026, 2:57:05 AM | |
| AnnotationFileIOTest.html | 241 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotationFileIOTest.js | 5 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_a6.html | 69 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_o0.html | 100 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotationFileIOTest_testCalcIdRestore_u9.html | 126 kB | 07 Jan 2026, 2:57:08 AM | |
| AnnotationFileIOTest_testProviderRestore_13p.html | 113 kB | 07 Jan 2026, 2:57:08 AM | |
| AppletFormatAdapter.html | 672 kB | 07 Jan 2026, 2:57:05 AM | |
| AppletFormatAdapter.js | 124 kB | 07 Jan 2026, 2:57:05 AM | |
| BLCFile.html | 153 kB | 07 Jan 2026, 2:57:05 AM | |
| BLCFile.js | 3 kB | 07 Jan 2026, 2:57:05 AM | |
| BSMLFile.html | 135 kB | 07 Jan 2026, 2:57:05 AM | |
| BSMLFile.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| BSMLFileTest.html | 54 kB | 07 Jan 2026, 2:57:06 AM | |
| BSMLFileTest.js | 1.0 kB | 07 Jan 2026, 2:57:06 AM | |
| BSMLFileTest_testParse_BSML_14b.html | 86 kB | 07 Jan 2026, 2:57:06 AM | |
| BackupFilenameFilter.html | 68 kB | 07 Jan 2026, 2:57:05 AM | |
| BackupFilenameFilter.js | 4 kB | 07 Jan 2026, 2:57:05 AM | |
| BackupFilenameParts.html | 129 kB | 07 Jan 2026, 2:57:05 AM | |
| BackupFilenameParts.js | 7 kB | 07 Jan 2026, 2:57:05 AM | |
| BackupFiles.html | 599 kB | 07 Jan 2026, 2:57:05 AM | |
| BackupFiles.js | 59 kB | 07 Jan 2026, 2:57:05 AM | |
| BackupFilesPresetEntry.html | 155 kB | 07 Jan 2026, 2:57:05 AM | |
| BackupFilesPresetEntry.js | 16 kB | 07 Jan 2026, 2:57:05 AM | |
| BackupFilesTest.html | 296 kB | 07 Jan 2026, 2:57:08 AM | |
| BackupFilesTest.js | 10 kB | 07 Jan 2026, 2:57:08 AM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_12i.html | 115 kB | 07 Jan 2026, 2:57:08 AM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_1r.html | 122 kB | 07 Jan 2026, 2:57:08 AM | |
| BackupFilesTest_backupsEnabledRollMaxTest_11k.html | 122 kB | 07 Jan 2026, 2:57:08 AM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_zy.html | 108 kB | 07 Jan 2026, 2:57:08 AM | |
| BackupFilesTest_noBackupsEnabledTest_8a.html | 116 kB | 07 Jan 2026, 2:57:08 AM | |
| BioJsHTMLOutput.html | 280 kB | 07 Jan 2026, 2:57:05 AM | |
| BioJsHTMLOutput.js | 74 kB | 07 Jan 2026, 2:57:05 AM | |
| BioJsHTMLOutputTest.html | 107 kB | 07 Jan 2026, 2:57:06 AM | |
| BioJsHTMLOutputTest.js | 2 kB | 07 Jan 2026, 2:57:06 AM | |
| BioJsHTMLOutputTest_expectedNullPointerException_14.html | 19 kB | 07 Jan 2026, 2:57:06 AM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_ny.html | 22 kB | 07 Jan 2026, 2:57:06 AM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_10t.html | 27 kB | 07 Jan 2026, 2:57:06 AM | |
| ClustalFile.html | 158 kB | 07 Jan 2026, 2:57:05 AM | |
| ClustalFile.js | 6 kB | 07 Jan 2026, 2:57:05 AM | |
| ClustalFileTest.html | 65 kB | 07 Jan 2026, 2:57:08 AM | |
| ClustalFileTest.js | 1 kB | 07 Jan 2026, 2:57:08 AM | |
| ClustalFileTest_testParse_noNumbering_97.html | 14 kB | 07 Jan 2026, 2:57:08 AM | |
| ClustalFileTest_testParse_withNumbering_gj.html | 14 kB | 07 Jan 2026, 2:57:08 AM | |
| CountReader.html | 48 kB | 07 Jan 2026, 2:57:05 AM | |
| CountReader.js | 0.7 kB | 07 Jan 2026, 2:57:05 AM | |
| CrossRef2xmlTests.html | 327 kB | 07 Jan 2026, 2:57:06 AM | |
| CrossRef2xmlTests.js | 4 kB | 07 Jan 2026, 2:57:06 AM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_v8.html | 217 kB | 07 Jan 2026, 2:57:06 AM | |
| DBRefFile.html | 43 kB | 07 Jan 2026, 2:57:05 AM | |
| DBRefFile.js | 0.6 kB | 07 Jan 2026, 2:57:05 AM | |
| DataSourceType.html | 254 kB | 07 Jan 2026, 2:57:05 AM | |
| DataSourceType.js | 23 kB | 07 Jan 2026, 2:57:05 AM | |
| EMBLLikeFlatFile.html | 429 kB | 07 Jan 2026, 2:57:05 AM | |
| EMBLLikeFlatFile.js | 17 kB | 07 Jan 2026, 2:57:05 AM | |
| EmblFlatFile.html | 134 kB | 07 Jan 2026, 2:57:05 AM | |
| EmblFlatFile.js | 4 kB | 07 Jan 2026, 2:57:05 AM | |
| EmblFlatFileTest.html | 229 kB | 07 Jan 2026, 2:57:08 AM | |
| EmblFlatFileTest.js | 5 kB | 07 Jan 2026, 2:57:08 AM | |
| EmblFlatFileTest_testAdjustForProteinLength_17h.html | 17 kB | 07 Jan 2026, 2:57:08 AM | |
| EmblFlatFileTest_testParseToRNA_lo.html | 33 kB | 07 Jan 2026, 2:57:08 AM | |
| EmblFlatFileTest_testParse_75.html | 24 kB | 07 Jan 2026, 2:57:08 AM | |
| EmblFlatFileTest_testParse_codonStartNot1_1jm.html | 11 kB | 07 Jan 2026, 2:57:08 AM | |
| EmblFlatFileTest_testParse_noUniprotXref_lu.html | 22 kB | 07 Jan 2026, 2:57:08 AM | |
| EmblFlatFileTest_testRemoveQuotes_3q.html | 12 kB | 07 Jan 2026, 2:57:08 AM | |
| FastaFile.html | 426 kB | 07 Jan 2026, 2:57:05 AM | |
| FastaFile.js | 111 kB | 07 Jan 2026, 2:57:05 AM | |
| FeaturesFile.html | 765 kB | 07 Jan 2026, 2:57:05 AM | |
| FeaturesFile.js | 27 kB | 07 Jan 2026, 2:57:05 AM | |
| FeaturesFileTest.html | 522 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest.js | 13 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_readGff3File_of.html | 39 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_simpleGff3FileClass_lg.html | 37 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_simpleGff3FileLoader_151.html | 119 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_7i.html | 37 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testOutputFeatureFilters_11e.html | 17 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testParseFilters_4b.html | 32 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testParse_1ag.html | 138 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_ab.html | 99 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testParse_mixedJalviewGff_e8.html | 128 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testParse_pureGff3_py.html | 134 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testPrintGffFormat_1gk.html | 131 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_1fi.html | 123 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testPrintJalviewFormat_4x.html | 102 kB | 07 Jan 2026, 2:57:07 AM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_16p.html | 125 kB | 07 Jan 2026, 2:57:07 AM | |
| FileFormat.html | 931 kB | 07 Jan 2026, 2:57:05 AM | |
| FileFormat.js | 88 kB | 07 Jan 2026, 2:57:05 AM | |
| FileFormatException.html | 58 kB | 07 Jan 2026, 2:57:05 AM | |
| FileFormatException.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| FileFormatI.html | 46 kB | 07 Jan 2026, 2:57:05 AM | |
| FileFormatI.js | 0.7 kB | 07 Jan 2026, 2:57:05 AM | |
| FileFormats.html | 555 kB | 07 Jan 2026, 2:57:05 AM | |
| FileFormats.js | 79 kB | 07 Jan 2026, 2:57:05 AM | |
| FileFormatsTest.html | 137 kB | 07 Jan 2026, 2:57:07 AM | |
| FileFormatsTest.js | 3 kB | 07 Jan 2026, 2:57:07 AM | |
| FileFormatsTest_testDeregisterFileFormat_v5.html | 15 kB | 07 Jan 2026, 2:57:08 AM | |
| FileFormatsTest_testForName_1c0.html | 14 kB | 07 Jan 2026, 2:57:08 AM | |
| FileFormatsTest_testGetFormats_1el.html | 14 kB | 07 Jan 2026, 2:57:08 AM | |
| FileFormatsTest_testGetReadableFormats_7r.html | 15 kB | 07 Jan 2026, 2:57:08 AM | |
| FileFormatsTest_testGetWritableFormats_15f.html | 15 kB | 07 Jan 2026, 2:57:08 AM | |
| FileFormatsTest_testIsIdentifiable_q4.html | 26 kB | 07 Jan 2026, 2:57:08 AM | |
| FileFormatsTest_testRegisterFileFormat_1h7.html | 16 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester.html | 130 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester.js | 3 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester_testGzipIo_tl.html | 24 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester_testGziplocalFileIO_cv.html | 14 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester_testIsGzipInputStream_1ih.html | 15 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester_testNonGzipURLIO_13x.html | 16 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester_testNonGziplocalFileIO_bd.html | 14 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester_testStarsInFasta1_59.html | 14 kB | 07 Jan 2026, 2:57:08 AM | |
| FileIOTester_testStarsInFasta2_ch.html | 54 kB | 07 Jan 2026, 2:57:08 AM | |
| FileLoader.html | 615 kB | 07 Jan 2026, 2:57:05 AM | |
| FileLoader.js | 242 kB | 07 Jan 2026, 2:57:05 AM | |
| FileLoaderTest.html | 58 kB | 07 Jan 2026, 2:57:08 AM | |
| FileLoaderTest.js | 1.0 kB | 07 Jan 2026, 2:57:08 AM | |
| FileLoaderTest_testUpdateRecentlyOpened_8j.html | 18 kB | 07 Jan 2026, 2:57:08 AM | |
| FileParse.html | 935 kB | 07 Jan 2026, 2:57:05 AM | |
| FileParse.js | 336 kB | 07 Jan 2026, 2:57:05 AM | |
| FormatAdapter.html | 450 kB | 07 Jan 2026, 2:57:05 AM | |
| FormatAdapter.js | 55 kB | 07 Jan 2026, 2:57:05 AM | |
| FormatAdapterTest.html | 118 kB | 07 Jan 2026, 2:57:06 AM | |
| FormatAdapterTest.js | 6 kB | 07 Jan 2026, 2:57:06 AM | |
| FormatAdapterTest_testRoundTrip_15k.html | 48 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_1hz.html | 26 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_1im.html | 24 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_5p.html | 25 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_8m.html | 26 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_94.html | 24 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_a7.html | 24 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_e3.html | 25 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_fl.html | 25 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_np.html | 25 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_p1.html | 24 kB | 07 Jan 2026, 2:57:07 AM | |
| FormatAdapterTest_testRoundTrip_uv.html | 34 kB | 07 Jan 2026, 2:57:07 AM | |
| GenBankFile.html | 121 kB | 07 Jan 2026, 2:57:05 AM | |
| GenBankFile.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| GenBankFileTest.html | 133 kB | 07 Jan 2026, 2:57:06 AM | |
| GenBankFileTest.js | 3 kB | 07 Jan 2026, 2:57:06 AM | |
| GenBankFileTest_testParse_1dn.html | 22 kB | 07 Jan 2026, 2:57:06 AM | |
| HMMFile.html | 406 kB | 07 Jan 2026, 2:57:05 AM | |
| HMMFile.js | 23 kB | 07 Jan 2026, 2:57:05 AM | |
| HMMFileTest.html | 318 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest.js | 7 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testAppendModelAsString_121.html | 13 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testAppendProperties_10c.html | 12 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testFillList_oq.html | 12 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testParseAnnotations_y2.html | 19 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testParseHeaderLines_amino_0.html | 15 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testParseHeaderLines_dna_d0.html | 15 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testParseModel_5.html | 17 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testParse_minimalFile_v6.html | 20 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testParse_uy.html | 16 kB | 07 Jan 2026, 2:57:07 AM | |
| HMMFileTest_testPrint_roundTrip_sg.html | 18 kB | 07 Jan 2026, 2:57:07 AM | |
| HTMLOutput.html | 197 kB | 07 Jan 2026, 2:57:05 AM | |
| HTMLOutput.js | 3 kB | 07 Jan 2026, 2:57:05 AM | |
| HtmlFile.html | 132 kB | 07 Jan 2026, 2:57:05 AM | |
| HtmlFile.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| HtmlFileTest.html | 39 kB | 07 Jan 2026, 2:57:08 AM | |
| HtmlFileTest.js | 0.6 kB | 07 Jan 2026, 2:57:08 AM | |
| HtmlSvgOutput.html | 173 kB | 07 Jan 2026, 2:57:05 AM | |
| HtmlSvgOutput.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFile.html | 580 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFile.js | 229 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest.html | 149 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest.js | 5 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest_testIdentify_14d.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_14o.html | 14 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest_testIdentify_14t.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_164.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_16s.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_185.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_1ar.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_1g8.html | 14 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest_testIdentify_1ia.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_1j9.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_1k1.html | 14 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest_testIdentify_3g.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_53.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_5y.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_8k.html | 14 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest_testIdentify_9i.html | 14 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest_testIdentify_cn.html | 14 kB | 07 Jan 2026, 2:57:05 AM | |
| IdentifyFileTest_testIdentify_dz.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_featureFile_be.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_o6.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_ou.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testIdentify_tp.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| IdentifyFileTest_testLooksLikeFeatureData_1du.html | 8 kB | 07 Jan 2026, 2:57:05 AM | |
| InputStreamParser.html | 44 kB | 07 Jan 2026, 2:57:05 AM | |
| InputStreamParser.js | 0.6 kB | 07 Jan 2026, 2:57:05 AM | |
| IntKeyStringValueEntry.html | 40 kB | 07 Jan 2026, 2:57:05 AM | |
| IntKeyStringValueEntry.js | 0.6 kB | 07 Jan 2026, 2:57:05 AM | |
| JPredFile.html | 233 kB | 07 Jan 2026, 2:57:05 AM | |
| JPredFile.js | 6 kB | 07 Jan 2026, 2:57:05 AM | |
| JSONFile.html | 508 kB | 07 Jan 2026, 2:57:05 AM | |
| JSONFile.js | 15 kB | 07 Jan 2026, 2:57:05 AM | |
| JSONFileTest.html | 364 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest.js | 6 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_colorSchemeTest_1de.html | 12 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_hiddenColsTest_12r.html | 13 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_hiddenSeqsTest_9t.html | 12 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_isShowSeqFeaturesSet_1cm.html | 12 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_roundTripTest_vs.html | 11 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_testAnnotationParsed_18z.html | 12 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_122.html | 115 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_testGrpParsed_colourNone_143.html | 140 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_testGrpParsed_ib.html | 13 kB | 07 Jan 2026, 2:57:06 AM | |
| JSONFileTest_testSeqParsed_dy.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| Jalview2xmlBase.html | 78 kB | 07 Jan 2026, 2:57:06 AM | |
| Jalview2xmlBase.js | 1 kB | 07 Jan 2026, 2:57:06 AM | |
| JalviewExportPropertiesTests.html | 71 kB | 07 Jan 2026, 2:57:06 AM | |
| JalviewExportPropertiesTests.js | 1 kB | 07 Jan 2026, 2:57:06 AM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_10d.html | 119 kB | 07 Jan 2026, 2:57:06 AM | |
| JalviewFileChooser.html | 529 kB | 07 Jan 2026, 2:57:05 AM | |
| JalviewFileChooser.js | 8 kB | 07 Jan 2026, 2:57:05 AM | |
| JalviewFileChooserTest.html | 104 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest.js | 5 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_100.html | 18 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_129.html | 17 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_145.html | 16 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_190.html | 12 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1gr.html | 18 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_6l.html | 20 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_as.html | 12 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_gm.html | 23 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_gz.html | 12 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_hi.html | 12 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i0.html | 16 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_k1.html | 19 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_m2.html | 15 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ux.html | 12 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_v.html | 22 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_xe.html | 21 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_xf.html | 24 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_xn.html | 20 kB | 07 Jan 2026, 2:57:07 AM | |
| JalviewFileFilter.html | 145 kB | 07 Jan 2026, 2:57:05 AM | |
| JalviewFileFilter.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| JalviewFileView.html | 115 kB | 07 Jan 2026, 2:57:05 AM | |
| JalviewFileView.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| JalviewFileViewTest.html | 90 kB | 07 Jan 2026, 2:57:06 AM | |
| JalviewFileViewTest.js | 2 kB | 07 Jan 2026, 2:57:06 AM | |
| JalviewFileViewTest_testGetExtension_lq.html | 34 kB | 07 Jan 2026, 2:57:06 AM | |
| JalviewFileViewTest_testGetImageIcon_pm.html | 22 kB | 07 Jan 2026, 2:57:06 AM | |
| JalviewFileViewTest_testGetTypeDescription_ri.html | 14 kB | 07 Jan 2026, 2:57:07 AM | |
| JnetAnnotationMaker.html | 140 kB | 07 Jan 2026, 2:57:05 AM | |
| JnetAnnotationMaker.js | 5 kB | 07 Jan 2026, 2:57:05 AM | |
| MSFfile.html | 212 kB | 07 Jan 2026, 2:57:05 AM | |
| MSFfile.js | 5 kB | 07 Jan 2026, 2:57:05 AM | |
| ModellerDescription.html | 243 kB | 07 Jan 2026, 2:57:05 AM | |
| ModellerDescription.js | 3 kB | 07 Jan 2026, 2:57:05 AM | |
| NewickFile.html | 567 kB | 07 Jan 2026, 2:57:05 AM | |
| NewickFile.js | 45 kB | 07 Jan 2026, 2:57:05 AM | |
| NewickFileTests.html | 121 kB | 07 Jan 2026, 2:57:07 AM | |
| NewickFileTests.js | 3 kB | 07 Jan 2026, 2:57:07 AM | |
| NewickFileTests_testTreeIO_1b9.html | 63 kB | 07 Jan 2026, 2:57:07 AM | |
| NewickFileTests_testTreeIO_q0.html | 66 kB | 07 Jan 2026, 2:57:07 AM | |
| NewickFileTests_testTreeIO_vg.html | 65 kB | 07 Jan 2026, 2:57:07 AM | |
| PContactPredictionFile.html | 101 kB | 07 Jan 2026, 2:57:05 AM | |
| PContactPredictionFile.js | 1 kB | 07 Jan 2026, 2:57:05 AM | |
| PDBFeatureSettings.html | 105 kB | 07 Jan 2026, 2:57:05 AM | |
| PDBFeatureSettings.js | 6 kB | 07 Jan 2026, 2:57:05 AM | |
| PIRFile.html | 120 kB | 07 Jan 2026, 2:57:05 AM | |
| PIRFile.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| PfamFile.html | 131 kB | 07 Jan 2026, 2:57:05 AM | |
| PfamFile.js | 8 kB | 07 Jan 2026, 2:57:05 AM | |
| PfamFormatInputTest.html | 56 kB | 07 Jan 2026, 2:57:08 AM | |
| PfamFormatInputTest.js | 1.0 kB | 07 Jan 2026, 2:57:08 AM | |
| PfamFormatInputTest_testPfamFormatNoLimits_19y.html | 21 kB | 07 Jan 2026, 2:57:08 AM | |
| PfamFormatInputTest_testPfamFormatValidLimits_1a.html | 21 kB | 07 Jan 2026, 2:57:08 AM | |
| PhylipFile.html | 176 kB | 07 Jan 2026, 2:57:05 AM | |
| PhylipFile.js | 6 kB | 07 Jan 2026, 2:57:05 AM | |
| PhylipFileTests.html | 128 kB | 07 Jan 2026, 2:57:06 AM | |
| PhylipFileTests.js | 3 kB | 07 Jan 2026, 2:57:06 AM | |
| PhylipFileTests_testInterleavedDataExtraction_er.html | 21 kB | 07 Jan 2026, 2:57:06 AM | |
| PhylipFileTests_testInterleavedIO_lv.html | 36 kB | 07 Jan 2026, 2:57:06 AM | |
| PhylipFileTests_testSequentialDataExtraction_119.html | 41 kB | 07 Jan 2026, 2:57:06 AM | |
| PhylipFileTests_testSequentialIO_140.html | 38 kB | 07 Jan 2026, 2:57:06 AM | |
| PileUpfile.html | 112 kB | 07 Jan 2026, 2:57:05 AM | |
| PileUpfile.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| RNAMLfileTest.html | 66 kB | 07 Jan 2026, 2:57:08 AM | |
| RNAMLfileTest.js | 1 kB | 07 Jan 2026, 2:57:08 AM | |
| RNAMLfileTest_testRnamlSeqImport_67.html | 71 kB | 07 Jan 2026, 2:57:08 AM | |
| RNAMLfileTest_testRnamlToStockholmIO_16f.html | 76 kB | 07 Jan 2026, 2:57:08 AM | |
| RnamlFile.html | 145 kB | 07 Jan 2026, 2:57:05 AM | |
| RnamlFile.js | 3 kB | 07 Jan 2026, 2:57:05 AM | |
| ScoreMatrixFile.html | 266 kB | 07 Jan 2026, 2:57:05 AM | |
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| ScoreMatrixFileTest.html | 334 kB | 07 Jan 2026, 2:57:06 AM | |
| ScoreMatrixFileTest.js | 7 kB | 07 Jan 2026, 2:57:06 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_1x.html | 17 kB | 07 Jan 2026, 2:57:06 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_b9.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_ce.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_zv.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_b5.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_di.html | 14 kB | 07 Jan 2026, 2:57:06 AM | |
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| ScoreMatrixFileTest_testParse_ncbiFormat_h.html | 29 kB | 07 Jan 2026, 2:57:06 AM | |
| SequenceAnnotationReport.html | 634 kB | 07 Jan 2026, 2:57:05 AM | |
| SequenceAnnotationReport.js | 40 kB | 07 Jan 2026, 2:57:05 AM | |
| SequenceAnnotationReportTest.html | 307 kB | 07 Jan 2026, 2:57:07 AM | |
| SequenceAnnotationReportTest.js | 7 kB | 07 Jan 2026, 2:57:07 AM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_1ej.html | 16 kB | 07 Jan 2026, 2:57:07 AM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_sb.html | 26 kB | 07 Jan 2026, 2:57:07 AM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_17q.html | 15 kB | 07 Jan 2026, 2:57:07 AM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_71.html | 16 kB | 07 Jan 2026, 2:57:07 AM | |
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| SequenceAnnotationReportTest_testAppendFeature_stripHtml_dq.html | 17 kB | 07 Jan 2026, 2:57:07 AM | |
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| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_1jd.html | 15 kB | 07 Jan 2026, 2:57:07 AM | |
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| SequenceAnnotationReportTest_testAppendFeatures_longText_ca.html | 11 kB | 07 Jan 2026, 2:57:07 AM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_hy.html | 19 kB | 07 Jan 2026, 2:57:07 AM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_114.html | 14 kB | 07 Jan 2026, 2:57:07 AM | |
| SimpleBlastFile.html | 152 kB | 07 Jan 2026, 2:57:05 AM | |
| SimpleBlastFile.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| StockholmFile.html | 717 kB | 07 Jan 2026, 2:57:05 AM | |
| StockholmFile.js | 63 kB | 07 Jan 2026, 2:57:05 AM | |
| StockholmFileTest.html | 515 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest.js | 20 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_9s.html | 72 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_dbrefOutput_1fy.html | 34 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_descriptionLineOutput_11g.html | 34 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_detectWussBrackets_108.html | 7 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_1a0.html | 41 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_pfamFileDataExtraction_ps.html | 79 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_pfamFileIO_q9.html | 70 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_rfamFileIO_c1.html | 72 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_secondaryStructureForRNASequence_1fr.html | 41 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_1dq.html | 67 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_iz.html | 49 kB | 07 Jan 2026, 2:57:06 AM | |
| StockholmFileTest_testAnnotationEquivalence_1h1.html | 44 kB | 07 Jan 2026, 2:57:06 AM | |
| StructureFile.html | 431 kB | 07 Jan 2026, 2:57:05 AM | |
| StructureFile.js | 79 kB | 07 Jan 2026, 2:57:05 AM | |
| TCoffeeScoreFile.html | 362 kB | 07 Jan 2026, 2:57:05 AM | |
| TCoffeeScoreFile.js | 15 kB | 07 Jan 2026, 2:57:05 AM | |
| TCoffeeScoreFileTest.html | 171 kB | 07 Jan 2026, 2:57:08 AM | |
| TCoffeeScoreFileTest.js | 4 kB | 07 Jan 2026, 2:57:08 AM | |
| TCoffeeScoreFileTest_testGetAsArray_17k.html | 43 kB | 07 Jan 2026, 2:57:08 AM | |
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| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_d8.html | 35 kB | 07 Jan 2026, 2:57:08 AM | |
| TCoffeeScoreFileTest_testHeightAndWidth_p6.html | 19 kB | 07 Jan 2026, 2:57:08 AM | |
| TCoffeeScoreFileTest_testParse_3f.html | 23 kB | 07 Jan 2026, 2:57:08 AM | |
| TCoffeeScoreFileTest_testReadBlock_1d5.html | 26 kB | 07 Jan 2026, 2:57:08 AM | |
| TCoffeeScoreFileTest_testReadHeader_xt.html | 12 kB | 07 Jan 2026, 2:57:08 AM | |
| TCoffeeScoreFileTest_testWrongFile_rv.html | 28 kB | 07 Jan 2026, 2:57:08 AM | |
| VamsasAppDatastore.html | 1.27 MB | 07 Jan 2026, 2:57:05 AM | |
| VamsasAppDatastore.js | 13 kB | 07 Jan 2026, 2:57:05 AM | |
| WSWUBlastClient.html | 177 kB | 07 Jan 2026, 2:57:05 AM | |
| WSWUBlastClient.js | 2 kB | 07 Jan 2026, 2:57:05 AM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 07 Jan 2026, 2:57:08 AM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 07 Jan 2026, 2:57:08 AM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_xp.html | 114 kB | 07 Jan 2026, 2:57:08 AM | |
| pkg-summary.html | 89 kB | 07 Jan 2026, 2:57:08 AM | |
| quick-wins.html | 33 kB | 07 Jan 2026, 2:57:08 AM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 07 Jan 2026, 2:56:54 AM | |
| test-AnnotationExporterTest.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-AnnotationFileIOTest.html | 10 kB | 07 Jan 2026, 2:56:54 AM | |
| test-BSMLFileTest.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-BackupFilesTest.html | 11 kB | 07 Jan 2026, 2:56:54 AM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 07 Jan 2026, 2:56:54 AM | |
| test-ClustalFileTest.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-CrossRef2xmlTests.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-EmblFlatFileTest.html | 11 kB | 07 Jan 2026, 2:56:54 AM | |
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| test-GenBankFileTest.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-HMMFileTest.html | 13 kB | 07 Jan 2026, 2:56:54 AM | |
| test-HtmlFileTest.html | 8 kB | 07 Jan 2026, 2:56:54 AM | |
| test-IdentifyFileTest.html | 19 kB | 07 Jan 2026, 2:56:54 AM | |
| test-JSONFileTest.html | 13 kB | 07 Jan 2026, 2:56:54 AM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-JalviewFileChooserTest.html | 17 kB | 07 Jan 2026, 2:56:54 AM | |
| test-JalviewFileViewTest.html | 10 kB | 07 Jan 2026, 2:56:54 AM | |
| test-NewickFileTests.html | 10 kB | 07 Jan 2026, 2:56:54 AM | |
| test-PfamFormatInputTest.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-PhylipFileTests.html | 10 kB | 07 Jan 2026, 2:56:54 AM | |
| test-RNAMLfileTest.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-ScoreMatrixFileTest.html | 19 kB | 07 Jan 2026, 2:56:54 AM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 07 Jan 2026, 2:56:54 AM | |
| test-StockholmFileTest.html | 14 kB | 07 Jan 2026, 2:56:54 AM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 07 Jan 2026, 2:56:54 AM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 07 Jan 2026, 2:56:54 AM | |
| test-pkg-summary.html | 36 kB | 07 Jan 2026, 2:56:54 AM | |
| testsrc-pkg-summary.html | 48 kB | 07 Jan 2026, 2:57:08 AM | |
| top-risks.html | 34 kB | 07 Jan 2026, 2:57:08 AM |