None
Build files
Jalview Builds - Gradle Develop Build - bug-JAL-4623_JAL-4624_PCA_for_SS - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
|
cache | 12 Dec 2025, 2:27:03 PM | |
|
|
exceptions | 12 Dec 2025, 2:26:50 PM | |
|
|
gff | 12 Dec 2025, 2:27:02 PM | |
|
|
packed | 12 Dec 2025, 2:27:18 PM | |
|
|
vamsas | 12 Dec 2025, 2:26:45 PM | |
|
|
vcf | 12 Dec 2025, 2:27:02 PM | |
| A3mFile.html | 58 kB | 12 Dec 2025, 2:26:47 PM | |
| A3mFile.js | 1.0 kB | 12 Dec 2025, 2:26:47 PM | |
| AMSAFile.html | 80 kB | 12 Dec 2025, 2:26:46 PM | |
| AMSAFile.js | 1 kB | 12 Dec 2025, 2:26:46 PM | |
| AlignFile.html | 706 kB | 12 Dec 2025, 2:26:46 PM | |
| AlignFile.js | 222 kB | 12 Dec 2025, 2:26:46 PM | |
| AlignmentFileReaderI.html | 36 kB | 12 Dec 2025, 2:26:46 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 12 Dec 2025, 2:26:46 PM | |
| AlignmentFileWriterI.html | 34 kB | 12 Dec 2025, 2:26:46 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 12 Dec 2025, 2:26:46 PM | |
| AlignmentProperties.html | 94 kB | 12 Dec 2025, 2:26:46 PM | |
| AlignmentProperties.js | 1 kB | 12 Dec 2025, 2:26:46 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_1aj.html | 15 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_rz.html | 13 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_kt.html | 16 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_qq.html | 162 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotationExporterTest.html | 59 kB | 12 Dec 2025, 2:26:48 PM | |
| AnnotationExporterTest.js | 1 kB | 12 Dec 2025, 2:26:48 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_tc.html | 94 kB | 12 Dec 2025, 2:26:48 PM | |
| AnnotationFile.html | 1.01 MB | 12 Dec 2025, 2:26:46 PM | |
| AnnotationFile.js | 59 kB | 12 Dec 2025, 2:26:46 PM | |
| AnnotationFileIOTest.html | 241 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotationFileIOTest.js | 5 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_7j.html | 40 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_vo.html | 103 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotationFileIOTest_testCalcIdRestore_ul.html | 111 kB | 12 Dec 2025, 2:26:49 PM | |
| AnnotationFileIOTest_testProviderRestore_5r.html | 110 kB | 12 Dec 2025, 2:26:49 PM | |
| AppletFormatAdapter.html | 680 kB | 12 Dec 2025, 2:26:46 PM | |
| AppletFormatAdapter.js | 129 kB | 12 Dec 2025, 2:26:46 PM | |
| BLCFile.html | 153 kB | 12 Dec 2025, 2:26:47 PM | |
| BLCFile.js | 3 kB | 12 Dec 2025, 2:26:47 PM | |
| BackupFilenameFilter.html | 68 kB | 12 Dec 2025, 2:26:46 PM | |
| BackupFilenameFilter.js | 3 kB | 12 Dec 2025, 2:26:46 PM | |
| BackupFilenameParts.html | 129 kB | 12 Dec 2025, 2:26:46 PM | |
| BackupFilenameParts.js | 7 kB | 12 Dec 2025, 2:26:46 PM | |
| BackupFiles.html | 597 kB | 12 Dec 2025, 2:26:46 PM | |
| BackupFiles.js | 57 kB | 12 Dec 2025, 2:26:46 PM | |
| BackupFilesPresetEntry.html | 155 kB | 12 Dec 2025, 2:26:46 PM | |
| BackupFilesPresetEntry.js | 16 kB | 12 Dec 2025, 2:26:46 PM | |
| BackupFilesTest.html | 296 kB | 12 Dec 2025, 2:26:49 PM | |
| BackupFilesTest.js | 10 kB | 12 Dec 2025, 2:26:49 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_xc.html | 93 kB | 12 Dec 2025, 2:26:49 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_12s.html | 110 kB | 12 Dec 2025, 2:26:49 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_t5.html | 93 kB | 12 Dec 2025, 2:26:49 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_se.html | 101 kB | 12 Dec 2025, 2:26:49 PM | |
| BackupFilesTest_noBackupsEnabledTest_e3.html | 109 kB | 12 Dec 2025, 2:26:49 PM | |
| BioJsHTMLOutput.html | 278 kB | 12 Dec 2025, 2:26:47 PM | |
| BioJsHTMLOutput.js | 72 kB | 12 Dec 2025, 2:26:47 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 12 Dec 2025, 2:26:47 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 12 Dec 2025, 2:26:47 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_13r.html | 8 kB | 12 Dec 2025, 2:26:47 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_103.html | 8 kB | 12 Dec 2025, 2:26:47 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_mw.html | 22 kB | 12 Dec 2025, 2:26:47 PM | |
| ClustalFile.html | 158 kB | 12 Dec 2025, 2:26:47 PM | |
| ClustalFile.js | 6 kB | 12 Dec 2025, 2:26:47 PM | |
| ClustalFileTest.html | 65 kB | 12 Dec 2025, 2:26:49 PM | |
| ClustalFileTest.js | 1 kB | 12 Dec 2025, 2:26:49 PM | |
| ClustalFileTest_testParse_noNumbering_l.html | 14 kB | 12 Dec 2025, 2:26:49 PM | |
| ClustalFileTest_testParse_withNumbering_xk.html | 14 kB | 12 Dec 2025, 2:26:49 PM | |
| CrossRef2xmlTests.html | 327 kB | 12 Dec 2025, 2:26:47 PM | |
| CrossRef2xmlTests.js | 4 kB | 12 Dec 2025, 2:26:47 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_2f.html | 183 kB | 12 Dec 2025, 2:26:47 PM | |
| DBRefFile.html | 43 kB | 12 Dec 2025, 2:26:47 PM | |
| DBRefFile.js | 0.6 kB | 12 Dec 2025, 2:26:47 PM | |
| DataSourceType.html | 269 kB | 12 Dec 2025, 2:26:46 PM | |
| DataSourceType.js | 25 kB | 12 Dec 2025, 2:26:46 PM | |
| EMBLLikeFlatFile.html | 429 kB | 12 Dec 2025, 2:26:46 PM | |
| EMBLLikeFlatFile.js | 17 kB | 12 Dec 2025, 2:26:46 PM | |
| EmblFlatFile.html | 134 kB | 12 Dec 2025, 2:26:46 PM | |
| EmblFlatFile.js | 4 kB | 12 Dec 2025, 2:26:46 PM | |
| EmblFlatFileTest.html | 229 kB | 12 Dec 2025, 2:26:49 PM | |
| EmblFlatFileTest.js | 5 kB | 12 Dec 2025, 2:26:49 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_57.html | 9 kB | 12 Dec 2025, 2:26:49 PM | |
| EmblFlatFileTest_testParseToRNA_zg.html | 21 kB | 12 Dec 2025, 2:26:49 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_tn.html | 7 kB | 12 Dec 2025, 2:26:49 PM | |
| EmblFlatFileTest_testParse_im.html | 21 kB | 12 Dec 2025, 2:26:49 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_vb.html | 19 kB | 12 Dec 2025, 2:26:49 PM | |
| EmblFlatFileTest_testRemoveQuotes_jt.html | 8 kB | 12 Dec 2025, 2:26:49 PM | |
| FastaFile.html | 428 kB | 12 Dec 2025, 2:26:47 PM | |
| FastaFile.js | 111 kB | 12 Dec 2025, 2:26:47 PM | |
| FeaturesFile.html | 765 kB | 12 Dec 2025, 2:26:46 PM | |
| FeaturesFile.js | 27 kB | 12 Dec 2025, 2:26:46 PM | |
| FeaturesFileTest.html | 522 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest.js | 13 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_readGff3File_hc.html | 36 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_simpleGff3FileClass_176.html | 34 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_simpleGff3FileLoader_s.html | 129 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_17w.html | 34 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testOutputFeatureFilters_j1.html | 14 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testParseFilters_os.html | 14 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testParse_1ao.html | 115 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_127.html | 92 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_ci.html | 111 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testParse_pureGff3_nh.html | 118 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testPrintGffFormat_17b.html | 108 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_qx.html | 117 kB | 12 Dec 2025, 2:26:48 PM | |
| FeaturesFileTest_testPrintJalviewFormat_8h.html | 105 kB | 12 Dec 2025, 2:26:49 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_19e.html | 112 kB | 12 Dec 2025, 2:26:48 PM | |
| FileFormat.html | 816 kB | 12 Dec 2025, 2:26:46 PM | |
| FileFormat.js | 81 kB | 12 Dec 2025, 2:26:46 PM | |
| FileFormatException.html | 58 kB | 12 Dec 2025, 2:26:47 PM | |
| FileFormatException.js | 2 kB | 12 Dec 2025, 2:26:47 PM | |
| FileFormatI.html | 47 kB | 12 Dec 2025, 2:26:46 PM | |
| FileFormatI.js | 0.7 kB | 12 Dec 2025, 2:26:46 PM | |
| FileFormats.html | 458 kB | 12 Dec 2025, 2:26:46 PM | |
| FileFormats.js | 71 kB | 12 Dec 2025, 2:26:46 PM | |
| FileFormatsTest.html | 137 kB | 12 Dec 2025, 2:26:48 PM | |
| FileFormatsTest.js | 3 kB | 12 Dec 2025, 2:26:48 PM | |
| FileFormatsTest_testDeregisterFileFormat_85.html | 9 kB | 12 Dec 2025, 2:26:49 PM | |
| FileFormatsTest_testForName_131.html | 9 kB | 12 Dec 2025, 2:26:49 PM | |
| FileFormatsTest_testGetFormats_148.html | 9 kB | 12 Dec 2025, 2:26:49 PM | |
| FileFormatsTest_testGetReadableFormats_19y.html | 9 kB | 12 Dec 2025, 2:26:49 PM | |
| FileFormatsTest_testGetWritableFormats_c3.html | 9 kB | 12 Dec 2025, 2:26:49 PM | |
| FileFormatsTest_testIsIdentifiable_nf.html | 9 kB | 12 Dec 2025, 2:26:49 PM | |
| FileFormatsTest_testRegisterFileFormat_1h.html | 9 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester.html | 129 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester.js | 3 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester_testGzipIo_y9.html | 12 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester_testGziplocalFileIO_13a.html | 11 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester_testIsGzipInputStream_rf.html | 12 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester_testNonGzipURLIO_v.html | 12 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester_testNonGziplocalFileIO_c.html | 11 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester_testStarsInFasta1_wy.html | 11 kB | 12 Dec 2025, 2:26:49 PM | |
| FileIOTester_testStarsInFasta2_14.html | 11 kB | 12 Dec 2025, 2:26:49 PM | |
| FileLoader.html | 601 kB | 12 Dec 2025, 2:26:46 PM | |
| FileLoader.js | 249 kB | 12 Dec 2025, 2:26:46 PM | |
| FileLoaderTest.html | 37 kB | 12 Dec 2025, 2:26:49 PM | |
| FileLoaderTest.js | 0.6 kB | 12 Dec 2025, 2:26:49 PM | |
| FileParse.html | 926 kB | 12 Dec 2025, 2:26:46 PM | |
| FileParse.js | 337 kB | 12 Dec 2025, 2:26:46 PM | |
| FormatAdapter.html | 458 kB | 12 Dec 2025, 2:26:46 PM | |
| FormatAdapter.js | 56 kB | 12 Dec 2025, 2:26:46 PM | |
| FormatAdapterTest.html | 112 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest.js | 5 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_13m.html | 21 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_18h.html | 24 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_5u.html | 24 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_5x.html | 22 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_7t.html | 34 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_iy.html | 28 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_kb.html | 27 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_kq.html | 21 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_t6.html | 25 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_u.html | 47 kB | 12 Dec 2025, 2:26:48 PM | |
| FormatAdapterTest_testRoundTrip_u4.html | 22 kB | 12 Dec 2025, 2:26:48 PM | |
| GenBankFile.html | 121 kB | 12 Dec 2025, 2:26:46 PM | |
| GenBankFile.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| GenBankFileTest.html | 133 kB | 12 Dec 2025, 2:26:48 PM | |
| GenBankFileTest.js | 3 kB | 12 Dec 2025, 2:26:48 PM | |
| GenBankFileTest_testParse_12z.html | 19 kB | 12 Dec 2025, 2:26:48 PM | |
| HTMLOutput.html | 197 kB | 12 Dec 2025, 2:26:46 PM | |
| HTMLOutput.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| HtmlFile.html | 132 kB | 12 Dec 2025, 2:26:46 PM | |
| HtmlFile.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| HtmlFileTest.html | 39 kB | 12 Dec 2025, 2:26:49 PM | |
| HtmlFileTest.js | 0.6 kB | 12 Dec 2025, 2:26:49 PM | |
| HtmlSvgOutput.html | 173 kB | 12 Dec 2025, 2:26:46 PM | |
| HtmlSvgOutput.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| IdentifyFile.html | 590 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFile.js | 236 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest.html | 149 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest.js | 5 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_10.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_10b.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_14v.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_164.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_1a9.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_65.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_7n.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_7s.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_9m.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_c8.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_featureFile_nj.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_ho.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_in.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_jf.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_o1.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_or.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_oz.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_q5.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_sw.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_t0.html | 13 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_u7.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testIdentify_wq.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_l2.html | 8 kB | 12 Dec 2025, 2:26:47 PM | |
| InputStreamParser.html | 44 kB | 12 Dec 2025, 2:26:46 PM | |
| InputStreamParser.js | 0.6 kB | 12 Dec 2025, 2:26:46 PM | |
| IntKeyStringValueEntry.html | 44 kB | 12 Dec 2025, 2:26:47 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 12 Dec 2025, 2:26:47 PM | |
| JPredFile.html | 220 kB | 12 Dec 2025, 2:26:46 PM | |
| JPredFile.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| JSONFile.html | 508 kB | 12 Dec 2025, 2:26:46 PM | |
| JSONFile.js | 14 kB | 12 Dec 2025, 2:26:46 PM | |
| JSONFileTest.html | 364 kB | 12 Dec 2025, 2:26:47 PM | |
| JSONFileTest.js | 6 kB | 12 Dec 2025, 2:26:47 PM | |
| JSONFileTest_colorSchemeTest_gg.html | 8 kB | 12 Dec 2025, 2:26:48 PM | |
| JSONFileTest_hiddenColsTest_wr.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JSONFileTest_hiddenSeqsTest_11e.html | 8 kB | 12 Dec 2025, 2:26:48 PM | |
| JSONFileTest_isShowSeqFeaturesSet_9z.html | 8 kB | 12 Dec 2025, 2:26:48 PM | |
| JSONFileTest_roundTripTest_2k.html | 7 kB | 12 Dec 2025, 2:26:48 PM | |
| JSONFileTest_testAnnotationParsed_pj.html | 8 kB | 12 Dec 2025, 2:26:48 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_cz.html | 105 kB | 12 Dec 2025, 2:26:48 PM | |
| JSONFileTest_testGrpParsed_colourNone_b1.html | 116 kB | 12 Dec 2025, 2:26:48 PM | |
| JSONFileTest_testGrpParsed_yt.html | 10 kB | 12 Dec 2025, 2:26:47 PM | |
| JSONFileTest_testSeqParsed_58.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| Jalview2xmlBase.html | 78 kB | 12 Dec 2025, 2:26:48 PM | |
| Jalview2xmlBase.js | 1 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_rp.html | 136 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooser.html | 649 kB | 12 Dec 2025, 2:26:46 PM | |
| JalviewFileChooser.js | 140 kB | 12 Dec 2025, 2:26:46 PM | |
| JalviewFileChooserTest.html | 110 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest.js | 6 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12g.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_14x.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_15p.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1bf.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_3s.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5j.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ap.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ax.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_bf.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_c0.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_dw.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_eg.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_em.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ey.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i8.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ia.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_kk.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_lp.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_r8.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_w1.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_yd.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_z1.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileFilter.html | 246 kB | 12 Dec 2025, 2:26:47 PM | |
| JalviewFileFilter.js | 65 kB | 12 Dec 2025, 2:26:47 PM | |
| JalviewFileView.html | 115 kB | 12 Dec 2025, 2:26:46 PM | |
| JalviewFileView.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| JalviewFileViewTest.html | 90 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileViewTest.js | 2 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileViewTest_testGetExtension_n8.html | 8 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileViewTest_testGetImageIcon_19i.html | 21 kB | 12 Dec 2025, 2:26:48 PM | |
| JalviewFileViewTest_testGetTypeDescription_150.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| JnetAnnotationMaker.html | 126 kB | 12 Dec 2025, 2:26:46 PM | |
| JnetAnnotationMaker.js | 1 kB | 12 Dec 2025, 2:26:46 PM | |
| MSFfile.html | 212 kB | 12 Dec 2025, 2:26:47 PM | |
| MSFfile.js | 5 kB | 12 Dec 2025, 2:26:47 PM | |
| ModellerDescription.html | 236 kB | 12 Dec 2025, 2:26:46 PM | |
| ModellerDescription.js | 3 kB | 12 Dec 2025, 2:26:46 PM | |
| NewickFile.html | 529 kB | 12 Dec 2025, 2:26:46 PM | |
| NewickFile.js | 39 kB | 12 Dec 2025, 2:26:46 PM | |
| NewickFileTests.html | 121 kB | 12 Dec 2025, 2:26:48 PM | |
| NewickFileTests.js | 3 kB | 12 Dec 2025, 2:26:48 PM | |
| NewickFileTests_testTreeIO_1ax.html | 33 kB | 12 Dec 2025, 2:26:48 PM | |
| NewickFileTests_testTreeIO_33.html | 35 kB | 12 Dec 2025, 2:26:48 PM | |
| NewickFileTests_testTreeIO_5o.html | 34 kB | 12 Dec 2025, 2:26:48 PM | |
| PContactPredictionFile.html | 101 kB | 12 Dec 2025, 2:26:46 PM | |
| PContactPredictionFile.js | 1 kB | 12 Dec 2025, 2:26:46 PM | |
| PDBFeatureSettings.html | 121 kB | 12 Dec 2025, 2:26:46 PM | |
| PDBFeatureSettings.js | 8 kB | 12 Dec 2025, 2:26:46 PM | |
| PIRFile.html | 120 kB | 12 Dec 2025, 2:26:46 PM | |
| PIRFile.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| PfamFile.html | 131 kB | 12 Dec 2025, 2:26:46 PM | |
| PfamFile.js | 8 kB | 12 Dec 2025, 2:26:46 PM | |
| PfamFormatInputTest.html | 56 kB | 12 Dec 2025, 2:26:49 PM | |
| PfamFormatInputTest.js | 1.0 kB | 12 Dec 2025, 2:26:49 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_p4.html | 21 kB | 12 Dec 2025, 2:26:49 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_2c.html | 21 kB | 12 Dec 2025, 2:26:49 PM | |
| PhylipFile.html | 176 kB | 12 Dec 2025, 2:26:46 PM | |
| PhylipFile.js | 6 kB | 12 Dec 2025, 2:26:46 PM | |
| PhylipFileTests.html | 128 kB | 12 Dec 2025, 2:26:47 PM | |
| PhylipFileTests.js | 3 kB | 12 Dec 2025, 2:26:47 PM | |
| PhylipFileTests_testInterleavedDataExtraction_6z.html | 19 kB | 12 Dec 2025, 2:26:47 PM | |
| PhylipFileTests_testInterleavedIO_v0.html | 27 kB | 12 Dec 2025, 2:26:47 PM | |
| PhylipFileTests_testSequentialDataExtraction_183.html | 20 kB | 12 Dec 2025, 2:26:47 PM | |
| PhylipFileTests_testSequentialIO_la.html | 20 kB | 12 Dec 2025, 2:26:47 PM | |
| PileUpfile.html | 112 kB | 12 Dec 2025, 2:26:46 PM | |
| PileUpfile.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| RNAMLfileTest.html | 66 kB | 12 Dec 2025, 2:26:49 PM | |
| RNAMLfileTest.js | 1 kB | 12 Dec 2025, 2:26:49 PM | |
| RNAMLfileTest_testRnamlSeqImport_13i.html | 57 kB | 12 Dec 2025, 2:26:49 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_1b.html | 69 kB | 12 Dec 2025, 2:26:49 PM | |
| RnamlFile.html | 145 kB | 12 Dec 2025, 2:26:46 PM | |
| RnamlFile.js | 3 kB | 12 Dec 2025, 2:26:46 PM | |
| ScoreMatrixFile.html | 266 kB | 12 Dec 2025, 2:26:46 PM | |
| ScoreMatrixFile.js | 24 kB | 12 Dec 2025, 2:26:46 PM | |
| ScoreMatrixFileTest.html | 334 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest.js | 7 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_eb.html | 14 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_tz.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_hg.html | 14 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_rn.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_b7.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_9e.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_ix.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_dh.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_uy.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_80.html | 12 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_ko.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_q8.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_14z.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_13h.html | 12 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_11x.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_2i.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_pd.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_18p.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_1o.html | 11 kB | 12 Dec 2025, 2:26:47 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_1bq.html | 12 kB | 12 Dec 2025, 2:26:47 PM | |
| SequenceAnnotationReport.html | 631 kB | 12 Dec 2025, 2:26:46 PM | |
| SequenceAnnotationReport.js | 41 kB | 12 Dec 2025, 2:26:46 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_1a4.html | 15 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_1af.html | 21 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_p2.html | 23 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_1bx.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_7x.html | 11 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_wc.html | 10 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_is.html | 21 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_10g.html | 23 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_26.html | 21 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_o0.html | 15 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_ja.html | 28 kB | 12 Dec 2025, 2:26:48 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_ry.html | 22 kB | 12 Dec 2025, 2:26:48 PM | |
| SimpleBlastFile.html | 152 kB | 12 Dec 2025, 2:26:46 PM | |
| SimpleBlastFile.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| StockholmFile.html | 675 kB | 12 Dec 2025, 2:26:46 PM | |
| StockholmFile.js | 60 kB | 12 Dec 2025, 2:26:46 PM | |
| StockholmFileTest.html | 515 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest.js | 20 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_3j.html | 52 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_dbrefOutput_lz.html | 44 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_descriptionLineOutput_1bu.html | 42 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_detectWussBrackets_zh.html | 12 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_m3.html | 52 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_pfamFileDataExtraction_5e.html | 74 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_pfamFileIO_11c.html | 55 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_rfamFileIO_6u.html | 51 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_dj.html | 49 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_hx.html | 46 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_53.html | 27 kB | 12 Dec 2025, 2:26:47 PM | |
| StockholmFileTest_testAnnotationEquivalence_11a.html | 13 kB | 12 Dec 2025, 2:26:47 PM | |
| StructureFile.html | 445 kB | 12 Dec 2025, 2:26:46 PM | |
| StructureFile.js | 96 kB | 12 Dec 2025, 2:26:46 PM | |
| TCoffeeScoreFile.html | 362 kB | 12 Dec 2025, 2:26:46 PM | |
| TCoffeeScoreFile.js | 14 kB | 12 Dec 2025, 2:26:46 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest_testGetAsArray_ky.html | 11 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest_testGetAsList_rc.html | 12 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_o7.html | 11 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_7u.html | 11 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest_testParse_142.html | 11 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest_testReadBlock_19g.html | 10 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest_testReadHeader_6i.html | 12 kB | 12 Dec 2025, 2:26:49 PM | |
| TCoffeeScoreFileTest_testWrongFile_i9.html | 10 kB | 12 Dec 2025, 2:26:49 PM | |
| VamsasAppDatastore.html | 1.26 MB | 12 Dec 2025, 2:26:46 PM | |
| VamsasAppDatastore.js | 13 kB | 12 Dec 2025, 2:26:46 PM | |
| WSWUBlastClient.html | 177 kB | 12 Dec 2025, 2:26:46 PM | |
| WSWUBlastClient.js | 2 kB | 12 Dec 2025, 2:26:46 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 12 Dec 2025, 2:26:49 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 12 Dec 2025, 2:26:49 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_e2.html | 119 kB | 12 Dec 2025, 2:26:49 PM | |
| pkg-summary.html | 86 kB | 12 Dec 2025, 2:26:49 PM | |
| quick-wins.html | 32 kB | 12 Dec 2025, 2:26:49 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 12 Dec 2025, 2:26:35 PM | |
| test-AnnotationExporterTest.html | 9 kB | 12 Dec 2025, 2:26:35 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 12 Dec 2025, 2:26:35 PM | |
| test-BackupFilesTest.html | 11 kB | 12 Dec 2025, 2:26:35 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 12 Dec 2025, 2:26:35 PM | |
| test-ClustalFileTest.html | 9 kB | 12 Dec 2025, 2:26:35 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 12 Dec 2025, 2:26:35 PM | |
| test-EmblFlatFileTest.html | 11 kB | 12 Dec 2025, 2:26:35 PM | |
| test-FeaturesFileTest.html | 15 kB | 12 Dec 2025, 2:26:35 PM | |
| test-FileFormatsTest.html | 12 kB | 12 Dec 2025, 2:26:35 PM | |
| test-FileIOTester.html | 12 kB | 12 Dec 2025, 2:26:35 PM | |
| test-FileLoaderTest.html | 8 kB | 12 Dec 2025, 2:26:35 PM | |
| test-FormatAdapterTest.html | 13 kB | 12 Dec 2025, 2:26:35 PM | |
| test-GenBankFileTest.html | 9 kB | 12 Dec 2025, 2:26:35 PM | |
| test-HtmlFileTest.html | 8 kB | 12 Dec 2025, 2:26:35 PM | |
| test-IdentifyFileTest.html | 19 kB | 12 Dec 2025, 2:26:35 PM | |
| test-JSONFileTest.html | 13 kB | 12 Dec 2025, 2:26:35 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 12 Dec 2025, 2:26:35 PM | |
| test-JalviewFileChooserTest.html | 20 kB | 12 Dec 2025, 2:26:35 PM | |
| test-JalviewFileViewTest.html | 10 kB | 12 Dec 2025, 2:26:35 PM | |
| test-NewickFileTests.html | 10 kB | 12 Dec 2025, 2:26:35 PM | |
| test-PfamFormatInputTest.html | 9 kB | 12 Dec 2025, 2:26:35 PM | |
| test-PhylipFileTests.html | 10 kB | 12 Dec 2025, 2:26:35 PM | |
| test-RNAMLfileTest.html | 9 kB | 12 Dec 2025, 2:26:35 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 12 Dec 2025, 2:26:35 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 12 Dec 2025, 2:26:35 PM | |
| test-StockholmFileTest.html | 14 kB | 12 Dec 2025, 2:26:35 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 12 Dec 2025, 2:26:35 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 12 Dec 2025, 2:26:35 PM | |
| test-pkg-summary.html | 33 kB | 12 Dec 2025, 2:26:35 PM | |
| testsrc-pkg-summary.html | 46 kB | 12 Dec 2025, 2:26:49 PM | |
| top-risks.html | 33 kB | 12 Dec 2025, 2:26:49 PM |