None
Build files
Jalview Builds - Gradle Develop Build - bug-JAL-4559_old_cli_args_in_JVL_docs - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
|
cache | 09 Dec 2025, 5:02:08 PM | |
|
|
exceptions | 09 Dec 2025, 5:01:56 PM | |
|
|
gff | 09 Dec 2025, 5:02:08 PM | |
|
|
packed | 09 Dec 2025, 5:02:24 PM | |
|
|
vamsas | 09 Dec 2025, 5:01:51 PM | |
|
|
vcf | 09 Dec 2025, 5:02:07 PM | |
| A3mFile.html | 58 kB | 09 Dec 2025, 5:01:52 PM | |
| A3mFile.js | 1.0 kB | 09 Dec 2025, 5:01:52 PM | |
| AMSAFile.html | 80 kB | 09 Dec 2025, 5:01:52 PM | |
| AMSAFile.js | 1 kB | 09 Dec 2025, 5:01:52 PM | |
| AlignFile.html | 706 kB | 09 Dec 2025, 5:01:52 PM | |
| AlignFile.js | 222 kB | 09 Dec 2025, 5:01:52 PM | |
| AlignmentFileReaderI.html | 36 kB | 09 Dec 2025, 5:01:52 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 09 Dec 2025, 5:01:52 PM | |
| AlignmentFileWriterI.html | 34 kB | 09 Dec 2025, 5:01:52 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 09 Dec 2025, 5:01:52 PM | |
| AlignmentProperties.html | 94 kB | 09 Dec 2025, 5:01:52 PM | |
| AlignmentProperties.js | 1 kB | 09 Dec 2025, 5:01:52 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_7x.html | 22 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_ct.html | 14 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_10b.html | 23 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_ja.html | 162 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotationExporterTest.html | 59 kB | 09 Dec 2025, 5:01:54 PM | |
| AnnotationExporterTest.js | 1 kB | 09 Dec 2025, 5:01:54 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_gx.html | 110 kB | 09 Dec 2025, 5:01:54 PM | |
| AnnotationFile.html | 1.01 MB | 09 Dec 2025, 5:01:52 PM | |
| AnnotationFile.js | 60 kB | 09 Dec 2025, 5:01:52 PM | |
| AnnotationFileIOTest.html | 241 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotationFileIOTest.js | 5 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_76.html | 40 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_tu.html | 103 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotationFileIOTest_testCalcIdRestore_lm.html | 110 kB | 09 Dec 2025, 5:01:55 PM | |
| AnnotationFileIOTest_testProviderRestore_qg.html | 110 kB | 09 Dec 2025, 5:01:55 PM | |
| AppletFormatAdapter.html | 680 kB | 09 Dec 2025, 5:01:52 PM | |
| AppletFormatAdapter.js | 129 kB | 09 Dec 2025, 5:01:52 PM | |
| BLCFile.html | 153 kB | 09 Dec 2025, 5:01:52 PM | |
| BLCFile.js | 3 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFilenameFilter.html | 68 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFilenameFilter.js | 3 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFilenameParts.html | 129 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFilenameParts.js | 7 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFiles.html | 600 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFiles.js | 58 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFilesPresetEntry.html | 155 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFilesPresetEntry.js | 15 kB | 09 Dec 2025, 5:01:52 PM | |
| BackupFilesTest.html | 296 kB | 09 Dec 2025, 5:01:55 PM | |
| BackupFilesTest.js | 9 kB | 09 Dec 2025, 5:01:55 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_9.html | 109 kB | 09 Dec 2025, 5:01:55 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_rd.html | 109 kB | 09 Dec 2025, 5:01:55 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_3z.html | 109 kB | 09 Dec 2025, 5:01:55 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_cs.html | 110 kB | 09 Dec 2025, 5:01:55 PM | |
| BackupFilesTest_noBackupsEnabledTest_12x.html | 93 kB | 09 Dec 2025, 5:01:55 PM | |
| BioJsHTMLOutput.html | 278 kB | 09 Dec 2025, 5:01:52 PM | |
| BioJsHTMLOutput.js | 73 kB | 09 Dec 2025, 5:01:52 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 09 Dec 2025, 5:01:53 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 09 Dec 2025, 5:01:53 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_19o.html | 8 kB | 09 Dec 2025, 5:01:53 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_24.html | 8 kB | 09 Dec 2025, 5:01:53 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_sc.html | 22 kB | 09 Dec 2025, 5:01:53 PM | |
| ClustalFile.html | 158 kB | 09 Dec 2025, 5:01:52 PM | |
| ClustalFile.js | 6 kB | 09 Dec 2025, 5:01:52 PM | |
| ClustalFileTest.html | 65 kB | 09 Dec 2025, 5:01:55 PM | |
| ClustalFileTest.js | 1 kB | 09 Dec 2025, 5:01:55 PM | |
| ClustalFileTest_testParse_noNumbering_1cy.html | 14 kB | 09 Dec 2025, 5:01:55 PM | |
| ClustalFileTest_testParse_withNumbering_1cc.html | 14 kB | 09 Dec 2025, 5:01:55 PM | |
| CrossRef2xmlTests.html | 327 kB | 09 Dec 2025, 5:01:53 PM | |
| CrossRef2xmlTests.js | 4 kB | 09 Dec 2025, 5:01:53 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_we.html | 179 kB | 09 Dec 2025, 5:01:53 PM | |
| DBRefFile.html | 43 kB | 09 Dec 2025, 5:01:52 PM | |
| DBRefFile.js | 0.6 kB | 09 Dec 2025, 5:01:52 PM | |
| DataSourceType.html | 269 kB | 09 Dec 2025, 5:01:52 PM | |
| DataSourceType.js | 25 kB | 09 Dec 2025, 5:01:52 PM | |
| EMBLLikeFlatFile.html | 429 kB | 09 Dec 2025, 5:01:52 PM | |
| EMBLLikeFlatFile.js | 17 kB | 09 Dec 2025, 5:01:52 PM | |
| EmblFlatFile.html | 134 kB | 09 Dec 2025, 5:01:52 PM | |
| EmblFlatFile.js | 4 kB | 09 Dec 2025, 5:01:52 PM | |
| EmblFlatFileTest.html | 229 kB | 09 Dec 2025, 5:01:54 PM | |
| EmblFlatFileTest.js | 5 kB | 09 Dec 2025, 5:01:54 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_187.html | 12 kB | 09 Dec 2025, 5:01:54 PM | |
| EmblFlatFileTest_testParseToRNA_eq.html | 23 kB | 09 Dec 2025, 5:01:54 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_6j.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_wf.html | 22 kB | 09 Dec 2025, 5:01:54 PM | |
| EmblFlatFileTest_testParse_oi.html | 23 kB | 09 Dec 2025, 5:01:54 PM | |
| EmblFlatFileTest_testRemoveQuotes_fs.html | 12 kB | 09 Dec 2025, 5:01:54 PM | |
| FastaFile.html | 428 kB | 09 Dec 2025, 5:01:52 PM | |
| FastaFile.js | 111 kB | 09 Dec 2025, 5:01:52 PM | |
| FeaturesFile.html | 765 kB | 09 Dec 2025, 5:01:52 PM | |
| FeaturesFile.js | 27 kB | 09 Dec 2025, 5:01:52 PM | |
| FeaturesFileTest.html | 522 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest.js | 13 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_readGff3File_fw.html | 52 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_simpleGff3FileClass_ru.html | 36 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_simpleGff3FileLoader_17u.html | 117 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_7n.html | 37 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testOutputFeatureFilters_yf.html | 17 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testParseFilters_xp.html | 15 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testParse_11.html | 115 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_h6.html | 112 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_mx.html | 116 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testParse_pureGff3_19q.html | 110 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testPrintGffFormat_113.html | 96 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_es.html | 114 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testPrintJalviewFormat_ug.html | 93 kB | 09 Dec 2025, 5:01:54 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_ls.html | 109 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormat.html | 830 kB | 09 Dec 2025, 5:01:52 PM | |
| FileFormat.js | 82 kB | 09 Dec 2025, 5:01:52 PM | |
| FileFormatException.html | 58 kB | 09 Dec 2025, 5:01:52 PM | |
| FileFormatException.js | 2 kB | 09 Dec 2025, 5:01:52 PM | |
| FileFormatI.html | 46 kB | 09 Dec 2025, 5:01:52 PM | |
| FileFormatI.js | 0.7 kB | 09 Dec 2025, 5:01:52 PM | |
| FileFormats.html | 478 kB | 09 Dec 2025, 5:01:52 PM | |
| FileFormats.js | 73 kB | 09 Dec 2025, 5:01:52 PM | |
| FileFormatsTest.html | 137 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormatsTest.js | 3 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormatsTest_testDeregisterFileFormat_cy.html | 9 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormatsTest_testForName_xs.html | 9 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormatsTest_testGetFormats_qa.html | 9 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormatsTest_testGetReadableFormats_ku.html | 9 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormatsTest_testGetWritableFormats_10l.html | 9 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormatsTest_testIsIdentifiable_3e.html | 9 kB | 09 Dec 2025, 5:01:54 PM | |
| FileFormatsTest_testRegisterFileFormat_4r.html | 9 kB | 09 Dec 2025, 5:01:54 PM | |
| FileIOTester.html | 130 kB | 09 Dec 2025, 5:01:54 PM | |
| FileIOTester.js | 3 kB | 09 Dec 2025, 5:01:54 PM | |
| FileIOTester_testGzipIo_rv.html | 12 kB | 09 Dec 2025, 5:01:54 PM | |
| FileIOTester_testGziplocalFileIO_48.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| FileIOTester_testIsGzipInputStream_18a.html | 12 kB | 09 Dec 2025, 5:01:54 PM | |
| FileIOTester_testNonGzipURLIO_o3.html | 12 kB | 09 Dec 2025, 5:01:55 PM | |
| FileIOTester_testNonGziplocalFileIO_10r.html | 11 kB | 09 Dec 2025, 5:01:55 PM | |
| FileIOTester_testStarsInFasta1_1c1.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| FileIOTester_testStarsInFasta2_tf.html | 11 kB | 09 Dec 2025, 5:01:55 PM | |
| FileLoader.html | 601 kB | 09 Dec 2025, 5:01:52 PM | |
| FileLoader.js | 249 kB | 09 Dec 2025, 5:01:52 PM | |
| FileLoaderTest.html | 37 kB | 09 Dec 2025, 5:01:55 PM | |
| FileLoaderTest.js | 0.6 kB | 09 Dec 2025, 5:01:55 PM | |
| FileParse.html | 927 kB | 09 Dec 2025, 5:01:52 PM | |
| FileParse.js | 338 kB | 09 Dec 2025, 5:01:52 PM | |
| FormatAdapter.html | 458 kB | 09 Dec 2025, 5:01:52 PM | |
| FormatAdapter.js | 55 kB | 09 Dec 2025, 5:01:52 PM | |
| FormatAdapterTest.html | 112 kB | 09 Dec 2025, 5:01:53 PM | |
| FormatAdapterTest.js | 5 kB | 09 Dec 2025, 5:01:53 PM | |
| FormatAdapterTest_testRoundTrip_12d.html | 43 kB | 09 Dec 2025, 5:01:54 PM | |
| FormatAdapterTest_testRoundTrip_19c.html | 31 kB | 09 Dec 2025, 5:01:54 PM | |
| FormatAdapterTest_testRoundTrip_1m.html | 21 kB | 09 Dec 2025, 5:01:54 PM | |
| FormatAdapterTest_testRoundTrip_8f.html | 21 kB | 09 Dec 2025, 5:01:54 PM | |
| FormatAdapterTest_testRoundTrip_92.html | 22 kB | 09 Dec 2025, 5:01:53 PM | |
| FormatAdapterTest_testRoundTrip_93.html | 23 kB | 09 Dec 2025, 5:01:54 PM | |
| FormatAdapterTest_testRoundTrip_a9.html | 22 kB | 09 Dec 2025, 5:01:54 PM | |
| FormatAdapterTest_testRoundTrip_dn.html | 21 kB | 09 Dec 2025, 5:01:54 PM | |
| FormatAdapterTest_testRoundTrip_g8.html | 21 kB | 09 Dec 2025, 5:01:53 PM | |
| FormatAdapterTest_testRoundTrip_uv.html | 22 kB | 09 Dec 2025, 5:01:53 PM | |
| FormatAdapterTest_testRoundTrip_va.html | 23 kB | 09 Dec 2025, 5:01:54 PM | |
| GenBankFile.html | 121 kB | 09 Dec 2025, 5:01:52 PM | |
| GenBankFile.js | 2 kB | 09 Dec 2025, 5:01:52 PM | |
| GenBankFileTest.html | 133 kB | 09 Dec 2025, 5:01:53 PM | |
| GenBankFileTest.js | 3 kB | 09 Dec 2025, 5:01:53 PM | |
| GenBankFileTest_testParse_106.html | 19 kB | 09 Dec 2025, 5:01:53 PM | |
| HTMLOutput.html | 197 kB | 09 Dec 2025, 5:01:52 PM | |
| HTMLOutput.js | 3 kB | 09 Dec 2025, 5:01:52 PM | |
| HtmlFile.html | 132 kB | 09 Dec 2025, 5:01:52 PM | |
| HtmlFile.js | 2 kB | 09 Dec 2025, 5:01:52 PM | |
| HtmlFileTest.html | 39 kB | 09 Dec 2025, 5:01:54 PM | |
| HtmlFileTest.js | 0.6 kB | 09 Dec 2025, 5:01:54 PM | |
| HtmlSvgOutput.html | 173 kB | 09 Dec 2025, 5:01:52 PM | |
| HtmlSvgOutput.js | 2 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFile.html | 591 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFile.js | 238 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest.html | 150 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest.js | 5 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_10s.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_11m.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_121.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_12w.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_16z.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_1ah.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_1bz.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_4m.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_54.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_8p.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_9k.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_featureFile_xt.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_fq.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_fy.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_gk.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_i1.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_i2.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_l4.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_l9.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_tj.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_x5.html | 11 kB | 09 Dec 2025, 5:01:52 PM | |
| IdentifyFileTest_testIdentify_zi.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testIdentify_zk.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_qp.html | 8 kB | 09 Dec 2025, 5:01:53 PM | |
| InputStreamParser.html | 44 kB | 09 Dec 2025, 5:01:52 PM | |
| InputStreamParser.js | 0.6 kB | 09 Dec 2025, 5:01:52 PM | |
| IntKeyStringValueEntry.html | 44 kB | 09 Dec 2025, 5:01:52 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 09 Dec 2025, 5:01:52 PM | |
| JPredFile.html | 220 kB | 09 Dec 2025, 5:01:52 PM | |
| JPredFile.js | 2 kB | 09 Dec 2025, 5:01:52 PM | |
| JSONFile.html | 508 kB | 09 Dec 2025, 5:01:52 PM | |
| JSONFile.js | 15 kB | 09 Dec 2025, 5:01:52 PM | |
| JSONFileTest.html | 364 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest.js | 6 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_colorSchemeTest_7v.html | 8 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_hiddenColsTest_5t.html | 10 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_hiddenSeqsTest_o6.html | 8 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_isShowSeqFeaturesSet_oh.html | 8 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_roundTripTest_90.html | 7 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_testAnnotationParsed_142.html | 8 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_1by.html | 118 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_testGrpParsed_19e.html | 10 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_testGrpParsed_colourNone_1c6.html | 110 kB | 09 Dec 2025, 5:01:53 PM | |
| JSONFileTest_testSeqParsed_0.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| Jalview2xmlBase.html | 78 kB | 09 Dec 2025, 5:01:53 PM | |
| Jalview2xmlBase.js | 1 kB | 09 Dec 2025, 5:01:53 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 09 Dec 2025, 5:01:53 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 09 Dec 2025, 5:01:53 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_bf.html | 137 kB | 09 Dec 2025, 5:01:53 PM | |
| JalviewFileChooser.html | 638 kB | 09 Dec 2025, 5:01:52 PM | |
| JalviewFileChooser.js | 137 kB | 09 Dec 2025, 5:01:52 PM | |
| JalviewFileChooserTest.html | 101 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest.js | 5 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12r.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1ar.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1g.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_3q.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_44.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_4w.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5p.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_67.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ce.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_co.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_k9.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_md.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ml.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_op.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_wj.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_yu.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| JalviewFileFilter.html | 248 kB | 09 Dec 2025, 5:01:52 PM | |
| JalviewFileFilter.js | 64 kB | 09 Dec 2025, 5:01:52 PM | |
| JalviewFileView.html | 115 kB | 09 Dec 2025, 5:01:52 PM | |
| JalviewFileView.js | 2 kB | 09 Dec 2025, 5:01:52 PM | |
| JalviewFileViewTest.html | 90 kB | 09 Dec 2025, 5:01:53 PM | |
| JalviewFileViewTest.js | 2 kB | 09 Dec 2025, 5:01:53 PM | |
| JalviewFileViewTest_testGetExtension_115.html | 8 kB | 09 Dec 2025, 5:01:53 PM | |
| JalviewFileViewTest_testGetImageIcon_h3.html | 9 kB | 09 Dec 2025, 5:01:53 PM | |
| JalviewFileViewTest_testGetTypeDescription_6e.html | 10 kB | 09 Dec 2025, 5:01:53 PM | |
| JnetAnnotationMaker.html | 126 kB | 09 Dec 2025, 5:01:52 PM | |
| JnetAnnotationMaker.js | 1 kB | 09 Dec 2025, 5:01:52 PM | |
| MSFfile.html | 212 kB | 09 Dec 2025, 5:01:52 PM | |
| MSFfile.js | 5 kB | 09 Dec 2025, 5:01:52 PM | |
| ModellerDescription.html | 236 kB | 09 Dec 2025, 5:01:52 PM | |
| ModellerDescription.js | 3 kB | 09 Dec 2025, 5:01:52 PM | |
| NewickFile.html | 529 kB | 09 Dec 2025, 5:01:52 PM | |
| NewickFile.js | 38 kB | 09 Dec 2025, 5:01:52 PM | |
| NewickFileTests.html | 121 kB | 09 Dec 2025, 5:01:54 PM | |
| NewickFileTests.js | 3 kB | 09 Dec 2025, 5:01:54 PM | |
| NewickFileTests_testTreeIO_71.html | 35 kB | 09 Dec 2025, 5:01:54 PM | |
| NewickFileTests_testTreeIO_am.html | 34 kB | 09 Dec 2025, 5:01:54 PM | |
| NewickFileTests_testTreeIO_wr.html | 32 kB | 09 Dec 2025, 5:01:54 PM | |
| PContactPredictionFile.html | 101 kB | 09 Dec 2025, 5:01:52 PM | |
| PContactPredictionFile.js | 1 kB | 09 Dec 2025, 5:01:52 PM | |
| PDBFeatureSettings.html | 121 kB | 09 Dec 2025, 5:01:52 PM | |
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| PfamFile.html | 131 kB | 09 Dec 2025, 5:01:52 PM | |
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| PfamFormatInputTest.html | 56 kB | 09 Dec 2025, 5:01:55 PM | |
| PfamFormatInputTest.js | 1.0 kB | 09 Dec 2025, 5:01:55 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_pw.html | 21 kB | 09 Dec 2025, 5:01:55 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_13n.html | 21 kB | 09 Dec 2025, 5:01:55 PM | |
| PhylipFile.html | 176 kB | 09 Dec 2025, 5:01:52 PM | |
| PhylipFile.js | 6 kB | 09 Dec 2025, 5:01:52 PM | |
| PhylipFileTests.html | 128 kB | 09 Dec 2025, 5:01:53 PM | |
| PhylipFileTests.js | 3 kB | 09 Dec 2025, 5:01:53 PM | |
| PhylipFileTests_testInterleavedDataExtraction_qx.html | 19 kB | 09 Dec 2025, 5:01:53 PM | |
| PhylipFileTests_testInterleavedIO_kc.html | 19 kB | 09 Dec 2025, 5:01:53 PM | |
| PhylipFileTests_testSequentialDataExtraction_6h.html | 19 kB | 09 Dec 2025, 5:01:53 PM | |
| PhylipFileTests_testSequentialIO_2u.html | 19 kB | 09 Dec 2025, 5:01:53 PM | |
| PileUpfile.html | 112 kB | 09 Dec 2025, 5:01:52 PM | |
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| RNAMLfileTest.html | 66 kB | 09 Dec 2025, 5:01:55 PM | |
| RNAMLfileTest.js | 1 kB | 09 Dec 2025, 5:01:55 PM | |
| RNAMLfileTest_testRnamlSeqImport_om.html | 30 kB | 09 Dec 2025, 5:01:55 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_zf.html | 48 kB | 09 Dec 2025, 5:01:55 PM | |
| RnamlFile.html | 145 kB | 09 Dec 2025, 5:01:52 PM | |
| RnamlFile.js | 3 kB | 09 Dec 2025, 5:01:52 PM | |
| ScoreMatrixFile.html | 266 kB | 09 Dec 2025, 5:01:52 PM | |
| ScoreMatrixFile.js | 24 kB | 09 Dec 2025, 5:01:52 PM | |
| ScoreMatrixFileTest.html | 334 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest.js | 7 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_1c5.html | 24 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_197.html | 21 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_x4.html | 22 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_1k.html | 21 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_12p.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_zb.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_ko.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_rz.html | 12 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_nu.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_1u.html | 25 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_14x.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_ab.html | 12 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_11o.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_7u.html | 12 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_1ck.html | 11 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_4j.html | 21 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_174.html | 21 kB | 09 Dec 2025, 5:01:53 PM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_ax.html | 21 kB | 09 Dec 2025, 5:01:53 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_vg.html | 22 kB | 09 Dec 2025, 5:01:53 PM | |
| SequenceAnnotationReport.html | 631 kB | 09 Dec 2025, 5:01:52 PM | |
| SequenceAnnotationReport.js | 41 kB | 09 Dec 2025, 5:01:52 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_1d4.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_p.html | 14 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_me.html | 10 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_15x.html | 19 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_c6.html | 26 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_157.html | 24 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_9t.html | 18 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_13.html | 14 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_g4.html | 20 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_wm.html | 11 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_72.html | 31 kB | 09 Dec 2025, 5:01:54 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_y8.html | 27 kB | 09 Dec 2025, 5:01:54 PM | |
| SimpleBlastFile.html | 152 kB | 09 Dec 2025, 5:01:52 PM | |
| SimpleBlastFile.js | 2 kB | 09 Dec 2025, 5:01:52 PM | |
| StockholmFile.html | 675 kB | 09 Dec 2025, 5:01:52 PM | |
| StockholmFile.js | 61 kB | 09 Dec 2025, 5:01:52 PM | |
| StockholmFileTest.html | 515 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest.js | 20 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_3l.html | 86 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_dbrefOutput_8d.html | 50 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_descriptionLineOutput_ai.html | 51 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_detectWussBrackets_hs.html | 17 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_12k.html | 63 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_pfamFileDataExtraction_7h.html | 73 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_pfamFileIO_lr.html | 51 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_rfamFileIO_156.html | 52 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_12a.html | 50 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_10t.html | 46 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_ik.html | 27 kB | 09 Dec 2025, 5:01:53 PM | |
| StockholmFileTest_testAnnotationEquivalence_up.html | 12 kB | 09 Dec 2025, 5:01:53 PM | |
| StructureFile.html | 445 kB | 09 Dec 2025, 5:01:52 PM | |
| StructureFile.js | 96 kB | 09 Dec 2025, 5:01:52 PM | |
| TCoffeeScoreFile.html | 362 kB | 09 Dec 2025, 5:01:52 PM | |
| TCoffeeScoreFile.js | 15 kB | 09 Dec 2025, 5:01:52 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest_testGetAsArray_123.html | 12 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest_testGetAsList_wi.html | 12 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_i.html | 11 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_s4.html | 11 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest_testParse_6y.html | 11 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest_testReadBlock_m.html | 10 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest_testReadHeader_z2.html | 12 kB | 09 Dec 2025, 5:01:55 PM | |
| TCoffeeScoreFileTest_testWrongFile_gr.html | 10 kB | 09 Dec 2025, 5:01:55 PM | |
| VamsasAppDatastore.html | 1.26 MB | 09 Dec 2025, 5:01:52 PM | |
| VamsasAppDatastore.js | 13 kB | 09 Dec 2025, 5:01:52 PM | |
| WSWUBlastClient.html | 177 kB | 09 Dec 2025, 5:01:52 PM | |
| WSWUBlastClient.js | 2 kB | 09 Dec 2025, 5:01:52 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 09 Dec 2025, 5:01:55 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 09 Dec 2025, 5:01:55 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_ta.html | 120 kB | 09 Dec 2025, 5:01:55 PM | |
| pkg-summary.html | 86 kB | 09 Dec 2025, 5:01:55 PM | |
| quick-wins.html | 32 kB | 09 Dec 2025, 5:01:55 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 09 Dec 2025, 5:01:41 PM | |
| test-AnnotationExporterTest.html | 9 kB | 09 Dec 2025, 5:01:41 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 09 Dec 2025, 5:01:41 PM | |
| test-BackupFilesTest.html | 11 kB | 09 Dec 2025, 5:01:41 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 09 Dec 2025, 5:01:41 PM | |
| test-ClustalFileTest.html | 9 kB | 09 Dec 2025, 5:01:41 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 09 Dec 2025, 5:01:41 PM | |
| test-EmblFlatFileTest.html | 11 kB | 09 Dec 2025, 5:01:41 PM | |
| test-FeaturesFileTest.html | 15 kB | 09 Dec 2025, 5:01:41 PM | |
| test-FileFormatsTest.html | 12 kB | 09 Dec 2025, 5:01:41 PM | |
| test-FileIOTester.html | 12 kB | 09 Dec 2025, 5:01:41 PM | |
| test-FileLoaderTest.html | 8 kB | 09 Dec 2025, 5:01:41 PM | |
| test-FormatAdapterTest.html | 13 kB | 09 Dec 2025, 5:01:41 PM | |
| test-GenBankFileTest.html | 9 kB | 09 Dec 2025, 5:01:41 PM | |
| test-HtmlFileTest.html | 8 kB | 09 Dec 2025, 5:01:41 PM | |
| test-IdentifyFileTest.html | 20 kB | 09 Dec 2025, 5:01:41 PM | |
| test-JSONFileTest.html | 13 kB | 09 Dec 2025, 5:01:41 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 09 Dec 2025, 5:01:41 PM | |
| test-JalviewFileChooserTest.html | 16 kB | 09 Dec 2025, 5:01:41 PM | |
| test-JalviewFileViewTest.html | 10 kB | 09 Dec 2025, 5:01:41 PM | |
| test-NewickFileTests.html | 10 kB | 09 Dec 2025, 5:01:41 PM | |
| test-PfamFormatInputTest.html | 9 kB | 09 Dec 2025, 5:01:41 PM | |
| test-PhylipFileTests.html | 10 kB | 09 Dec 2025, 5:01:41 PM | |
| test-RNAMLfileTest.html | 9 kB | 09 Dec 2025, 5:01:41 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 09 Dec 2025, 5:01:41 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 09 Dec 2025, 5:01:41 PM | |
| test-StockholmFileTest.html | 14 kB | 09 Dec 2025, 5:01:41 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 09 Dec 2025, 5:01:41 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 09 Dec 2025, 5:01:41 PM | |
| test-pkg-summary.html | 33 kB | 09 Dec 2025, 5:01:41 PM | |
| testsrc-pkg-summary.html | 46 kB | 09 Dec 2025, 5:01:55 PM | |
| top-risks.html | 33 kB | 09 Dec 2025, 5:01:55 PM |