None
Build files
Jalview Builds - Gradle Develop Build - patch-JAL-4606_again_and_again - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
|
cache | 05 Dec 2025, 6:17:50 PM | |
|
|
exceptions | 05 Dec 2025, 6:17:38 PM | |
|
|
gff | 05 Dec 2025, 6:17:50 PM | |
|
|
packed | 05 Dec 2025, 6:18:06 PM | |
|
|
vamsas | 05 Dec 2025, 6:17:32 PM | |
|
|
vcf | 05 Dec 2025, 6:17:49 PM | |
| A3mFile.html | 58 kB | 05 Dec 2025, 6:17:34 PM | |
| A3mFile.js | 0.9 kB | 05 Dec 2025, 6:17:34 PM | |
| AMSAFile.html | 80 kB | 05 Dec 2025, 6:17:34 PM | |
| AMSAFile.js | 1 kB | 05 Dec 2025, 6:17:34 PM | |
| AlignFile.html | 706 kB | 05 Dec 2025, 6:17:34 PM | |
| AlignFile.js | 222 kB | 05 Dec 2025, 6:17:34 PM | |
| AlignmentFileReaderI.html | 36 kB | 05 Dec 2025, 6:17:33 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 05 Dec 2025, 6:17:33 PM | |
| AlignmentFileWriterI.html | 34 kB | 05 Dec 2025, 6:17:34 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 05 Dec 2025, 6:17:34 PM | |
| AlignmentProperties.html | 94 kB | 05 Dec 2025, 6:17:33 PM | |
| AlignmentProperties.js | 1 kB | 05 Dec 2025, 6:17:33 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 05 Dec 2025, 6:17:37 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 05 Dec 2025, 6:17:37 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_7p.html | 21 kB | 05 Dec 2025, 6:17:37 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_i9.html | 19 kB | 05 Dec 2025, 6:17:37 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_hq.html | 23 kB | 05 Dec 2025, 6:17:37 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_3s.html | 162 kB | 05 Dec 2025, 6:17:37 PM | |
| AnnotationExporterTest.html | 59 kB | 05 Dec 2025, 6:17:35 PM | |
| AnnotationExporterTest.js | 1 kB | 05 Dec 2025, 6:17:35 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_l6.html | 110 kB | 05 Dec 2025, 6:17:35 PM | |
| AnnotationFile.html | 1.01 MB | 05 Dec 2025, 6:17:34 PM | |
| AnnotationFile.js | 60 kB | 05 Dec 2025, 6:17:34 PM | |
| AnnotationFileIOTest.html | 241 kB | 05 Dec 2025, 6:17:36 PM | |
| AnnotationFileIOTest.js | 5 kB | 05 Dec 2025, 6:17:36 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_fn.html | 40 kB | 05 Dec 2025, 6:17:36 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_62.html | 102 kB | 05 Dec 2025, 6:17:37 PM | |
| AnnotationFileIOTest_testCalcIdRestore_o8.html | 110 kB | 05 Dec 2025, 6:17:36 PM | |
| AnnotationFileIOTest_testProviderRestore_f5.html | 110 kB | 05 Dec 2025, 6:17:37 PM | |
| AppletFormatAdapter.html | 679 kB | 05 Dec 2025, 6:17:33 PM | |
| AppletFormatAdapter.js | 129 kB | 05 Dec 2025, 6:17:33 PM | |
| BLCFile.html | 153 kB | 05 Dec 2025, 6:17:34 PM | |
| BLCFile.js | 3 kB | 05 Dec 2025, 6:17:34 PM | |
| BackupFilenameFilter.html | 68 kB | 05 Dec 2025, 6:17:33 PM | |
| BackupFilenameFilter.js | 3 kB | 05 Dec 2025, 6:17:33 PM | |
| BackupFilenameParts.html | 129 kB | 05 Dec 2025, 6:17:34 PM | |
| BackupFilenameParts.js | 7 kB | 05 Dec 2025, 6:17:34 PM | |
| BackupFiles.html | 600 kB | 05 Dec 2025, 6:17:33 PM | |
| BackupFiles.js | 58 kB | 05 Dec 2025, 6:17:33 PM | |
| BackupFilesPresetEntry.html | 155 kB | 05 Dec 2025, 6:17:34 PM | |
| BackupFilesPresetEntry.js | 15 kB | 05 Dec 2025, 6:17:34 PM | |
| BackupFilesTest.html | 296 kB | 05 Dec 2025, 6:17:37 PM | |
| BackupFilesTest.js | 9 kB | 05 Dec 2025, 6:17:37 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_bc.html | 109 kB | 05 Dec 2025, 6:17:37 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_3x.html | 96 kB | 05 Dec 2025, 6:17:37 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_4r.html | 110 kB | 05 Dec 2025, 6:17:37 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_1o.html | 109 kB | 05 Dec 2025, 6:17:37 PM | |
| BackupFilesTest_noBackupsEnabledTest_uq.html | 109 kB | 05 Dec 2025, 6:17:37 PM | |
| BioJsHTMLOutput.html | 280 kB | 05 Dec 2025, 6:17:34 PM | |
| BioJsHTMLOutput.js | 74 kB | 05 Dec 2025, 6:17:34 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 05 Dec 2025, 6:17:35 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 05 Dec 2025, 6:17:35 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_1a5.html | 8 kB | 05 Dec 2025, 6:17:35 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_xt.html | 8 kB | 05 Dec 2025, 6:17:35 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_6e.html | 23 kB | 05 Dec 2025, 6:17:35 PM | |
| ClustalFile.html | 158 kB | 05 Dec 2025, 6:17:34 PM | |
| ClustalFile.js | 6 kB | 05 Dec 2025, 6:17:34 PM | |
| ClustalFileTest.html | 65 kB | 05 Dec 2025, 6:17:36 PM | |
| ClustalFileTest.js | 1 kB | 05 Dec 2025, 6:17:36 PM | |
| ClustalFileTest_testParse_noNumbering_7e.html | 14 kB | 05 Dec 2025, 6:17:36 PM | |
| ClustalFileTest_testParse_withNumbering_o4.html | 14 kB | 05 Dec 2025, 6:17:36 PM | |
| CrossRef2xmlTests.html | 327 kB | 05 Dec 2025, 6:17:34 PM | |
| CrossRef2xmlTests.js | 4 kB | 05 Dec 2025, 6:17:34 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_15n.html | 180 kB | 05 Dec 2025, 6:17:34 PM | |
| DBRefFile.html | 43 kB | 05 Dec 2025, 6:17:34 PM | |
| DBRefFile.js | 0.6 kB | 05 Dec 2025, 6:17:34 PM | |
| DataSourceType.html | 269 kB | 05 Dec 2025, 6:17:33 PM | |
| DataSourceType.js | 25 kB | 05 Dec 2025, 6:17:33 PM | |
| EMBLLikeFlatFile.html | 429 kB | 05 Dec 2025, 6:17:34 PM | |
| EMBLLikeFlatFile.js | 17 kB | 05 Dec 2025, 6:17:34 PM | |
| EmblFlatFile.html | 134 kB | 05 Dec 2025, 6:17:33 PM | |
| EmblFlatFile.js | 4 kB | 05 Dec 2025, 6:17:33 PM | |
| EmblFlatFileTest.html | 229 kB | 05 Dec 2025, 6:17:36 PM | |
| EmblFlatFileTest.js | 5 kB | 05 Dec 2025, 6:17:36 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_yp.html | 12 kB | 05 Dec 2025, 6:17:36 PM | |
| EmblFlatFileTest_testParseToRNA_3b.html | 22 kB | 05 Dec 2025, 6:17:36 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_34.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| EmblFlatFileTest_testParse_mt.html | 23 kB | 05 Dec 2025, 6:17:36 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_v8.html | 22 kB | 05 Dec 2025, 6:17:36 PM | |
| EmblFlatFileTest_testRemoveQuotes_co.html | 12 kB | 05 Dec 2025, 6:17:36 PM | |
| FastaFile.html | 427 kB | 05 Dec 2025, 6:17:34 PM | |
| FastaFile.js | 111 kB | 05 Dec 2025, 6:17:34 PM | |
| FeaturesFile.html | 765 kB | 05 Dec 2025, 6:17:34 PM | |
| FeaturesFile.js | 27 kB | 05 Dec 2025, 6:17:34 PM | |
| FeaturesFileTest.html | 522 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest.js | 13 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_readGff3File_mb.html | 36 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_simpleGff3FileClass_dt.html | 34 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_simpleGff3FileLoader_1aa.html | 109 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_2z.html | 34 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testOutputFeatureFilters_ku.html | 14 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testParseFilters_hi.html | 14 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testParse_12j.html | 115 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_mo.html | 97 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_ua.html | 111 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testParse_pureGff3_s.html | 118 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testPrintGffFormat_tj.html | 94 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_hg.html | 117 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testPrintJalviewFormat_106.html | 112 kB | 05 Dec 2025, 6:17:36 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_145.html | 109 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormat.html | 840 kB | 05 Dec 2025, 6:17:34 PM | |
| FileFormat.js | 84 kB | 05 Dec 2025, 6:17:34 PM | |
| FileFormatException.html | 58 kB | 05 Dec 2025, 6:17:34 PM | |
| FileFormatException.js | 2 kB | 05 Dec 2025, 6:17:34 PM | |
| FileFormatI.html | 46 kB | 05 Dec 2025, 6:17:33 PM | |
| FileFormatI.js | 0.7 kB | 05 Dec 2025, 6:17:33 PM | |
| FileFormats.html | 492 kB | 05 Dec 2025, 6:17:33 PM | |
| FileFormats.js | 75 kB | 05 Dec 2025, 6:17:33 PM | |
| FileFormatsTest.html | 137 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormatsTest.js | 3 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormatsTest_testDeregisterFileFormat_1z.html | 9 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormatsTest_testForName_lx.html | 9 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormatsTest_testGetFormats_7t.html | 9 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormatsTest_testGetReadableFormats_ui.html | 9 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormatsTest_testGetWritableFormats_9h.html | 9 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormatsTest_testIsIdentifiable_11l.html | 9 kB | 05 Dec 2025, 6:17:36 PM | |
| FileFormatsTest_testRegisterFileFormat_15r.html | 9 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester.html | 130 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester.js | 3 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester_testGzipIo_12v.html | 12 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester_testGziplocalFileIO_d0.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester_testIsGzipInputStream_w3.html | 12 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester_testNonGzipURLIO_37.html | 12 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester_testNonGziplocalFileIO_9l.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester_testStarsInFasta1_iv.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| FileIOTester_testStarsInFasta2_n0.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| FileLoader.html | 601 kB | 05 Dec 2025, 6:17:34 PM | |
| FileLoader.js | 250 kB | 05 Dec 2025, 6:17:34 PM | |
| FileLoaderTest.html | 37 kB | 05 Dec 2025, 6:17:37 PM | |
| FileLoaderTest.js | 0.6 kB | 05 Dec 2025, 6:17:37 PM | |
| FileParse.html | 926 kB | 05 Dec 2025, 6:17:34 PM | |
| FileParse.js | 338 kB | 05 Dec 2025, 6:17:34 PM | |
| FormatAdapter.html | 457 kB | 05 Dec 2025, 6:17:33 PM | |
| FormatAdapter.js | 55 kB | 05 Dec 2025, 6:17:33 PM | |
| FormatAdapterTest.html | 112 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest.js | 5 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_10e.html | 23 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_130.html | 21 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_16d.html | 48 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_18v.html | 21 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_1a4.html | 25 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_9s.html | 28 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_ao.html | 22 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_ey.html | 33 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_f3.html | 22 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_fv.html | 23 kB | 05 Dec 2025, 6:17:35 PM | |
| FormatAdapterTest_testRoundTrip_yi.html | 24 kB | 05 Dec 2025, 6:17:35 PM | |
| GenBankFile.html | 121 kB | 05 Dec 2025, 6:17:33 PM | |
| GenBankFile.js | 2 kB | 05 Dec 2025, 6:17:33 PM | |
| GenBankFileTest.html | 133 kB | 05 Dec 2025, 6:17:35 PM | |
| GenBankFileTest.js | 3 kB | 05 Dec 2025, 6:17:35 PM | |
| GenBankFileTest_testParse_102.html | 20 kB | 05 Dec 2025, 6:17:35 PM | |
| HTMLOutput.html | 197 kB | 05 Dec 2025, 6:17:34 PM | |
| HTMLOutput.js | 2 kB | 05 Dec 2025, 6:17:34 PM | |
| HtmlFile.html | 132 kB | 05 Dec 2025, 6:17:34 PM | |
| HtmlFile.js | 2 kB | 05 Dec 2025, 6:17:34 PM | |
| HtmlFileTest.html | 39 kB | 05 Dec 2025, 6:17:36 PM | |
| HtmlFileTest.js | 0.6 kB | 05 Dec 2025, 6:17:36 PM | |
| HtmlSvgOutput.html | 173 kB | 05 Dec 2025, 6:17:33 PM | |
| HtmlSvgOutput.js | 2 kB | 05 Dec 2025, 6:17:33 PM | |
| IdentifyFile.html | 591 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFile.js | 238 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest.html | 150 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest.js | 5 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_10a.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_10s.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_11r.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_12y.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_178.html | 13 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_1db.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_9i.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_fd.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_featureFile_18h.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_hx.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_jf.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_ji.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_kb.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_km.html | 13 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_kn.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_kq.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_nf.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_p6.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_qv.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_tv.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_ug.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_wh.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testIdentify_xl.html | 11 kB | 05 Dec 2025, 6:17:34 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_60.html | 8 kB | 05 Dec 2025, 6:17:34 PM | |
| InputStreamParser.html | 44 kB | 05 Dec 2025, 6:17:34 PM | |
| InputStreamParser.js | 0.6 kB | 05 Dec 2025, 6:17:34 PM | |
| IntKeyStringValueEntry.html | 44 kB | 05 Dec 2025, 6:17:34 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 05 Dec 2025, 6:17:34 PM | |
| JPredFile.html | 220 kB | 05 Dec 2025, 6:17:34 PM | |
| JPredFile.js | 2 kB | 05 Dec 2025, 6:17:34 PM | |
| JSONFile.html | 508 kB | 05 Dec 2025, 6:17:33 PM | |
| JSONFile.js | 14 kB | 05 Dec 2025, 6:17:33 PM | |
| JSONFileTest.html | 364 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest.js | 6 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_colorSchemeTest_wq.html | 8 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_hiddenColsTest_119.html | 10 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_hiddenSeqsTest_n4.html | 8 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_isShowSeqFeaturesSet_wg.html | 8 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_roundTripTest_77.html | 7 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_testAnnotationParsed_17t.html | 8 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_bg.html | 127 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_testGrpParsed_8b.html | 10 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_testGrpParsed_colourNone_9x.html | 102 kB | 05 Dec 2025, 6:17:35 PM | |
| JSONFileTest_testSeqParsed_3d.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| Jalview2xmlBase.html | 78 kB | 05 Dec 2025, 6:17:35 PM | |
| Jalview2xmlBase.js | 1 kB | 05 Dec 2025, 6:17:35 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 05 Dec 2025, 6:17:35 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 05 Dec 2025, 6:17:35 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_w7.html | 130 kB | 05 Dec 2025, 6:17:35 PM | |
| JalviewFileChooser.html | 639 kB | 05 Dec 2025, 6:17:34 PM | |
| JalviewFileChooser.js | 135 kB | 05 Dec 2025, 6:17:34 PM | |
| JalviewFileChooserTest.html | 104 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest.js | 5 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_16.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_17w.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_19h.html | 10 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1f.html | 22 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_4b.html | 10 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5g.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_8y.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_am.html | 10 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_b0.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_gt.html | 19 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_iz.html | 10 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_k1.html | 10 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_m5.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_mm.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qc.html | 10 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qp.html | 10 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_v3.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_w1.html | 13 kB | 05 Dec 2025, 6:17:36 PM | |
| JalviewFileFilter.html | 245 kB | 05 Dec 2025, 6:17:34 PM | |
| JalviewFileFilter.js | 63 kB | 05 Dec 2025, 6:17:34 PM | |
| JalviewFileView.html | 115 kB | 05 Dec 2025, 6:17:33 PM | |
| JalviewFileView.js | 2 kB | 05 Dec 2025, 6:17:33 PM | |
| JalviewFileViewTest.html | 90 kB | 05 Dec 2025, 6:17:35 PM | |
| JalviewFileViewTest.js | 2 kB | 05 Dec 2025, 6:17:35 PM | |
| JalviewFileViewTest_testGetExtension_cp.html | 8 kB | 05 Dec 2025, 6:17:35 PM | |
| JalviewFileViewTest_testGetImageIcon_xw.html | 9 kB | 05 Dec 2025, 6:17:35 PM | |
| JalviewFileViewTest_testGetTypeDescription_d7.html | 10 kB | 05 Dec 2025, 6:17:35 PM | |
| JnetAnnotationMaker.html | 126 kB | 05 Dec 2025, 6:17:34 PM | |
| JnetAnnotationMaker.js | 1 kB | 05 Dec 2025, 6:17:34 PM | |
| MSFfile.html | 212 kB | 05 Dec 2025, 6:17:34 PM | |
| MSFfile.js | 5 kB | 05 Dec 2025, 6:17:34 PM | |
| ModellerDescription.html | 236 kB | 05 Dec 2025, 6:17:33 PM | |
| ModellerDescription.js | 3 kB | 05 Dec 2025, 6:17:33 PM | |
| NewickFile.html | 529 kB | 05 Dec 2025, 6:17:34 PM | |
| NewickFile.js | 38 kB | 05 Dec 2025, 6:17:34 PM | |
| NewickFileTests.html | 121 kB | 05 Dec 2025, 6:17:35 PM | |
| NewickFileTests.js | 3 kB | 05 Dec 2025, 6:17:35 PM | |
| NewickFileTests_testTreeIO_4.html | 35 kB | 05 Dec 2025, 6:17:35 PM | |
| NewickFileTests_testTreeIO_6s.html | 34 kB | 05 Dec 2025, 6:17:35 PM | |
| NewickFileTests_testTreeIO_f2.html | 33 kB | 05 Dec 2025, 6:17:35 PM | |
| PContactPredictionFile.html | 101 kB | 05 Dec 2025, 6:17:34 PM | |
| PContactPredictionFile.js | 1 kB | 05 Dec 2025, 6:17:34 PM | |
| PDBFeatureSettings.html | 121 kB | 05 Dec 2025, 6:17:34 PM | |
| PDBFeatureSettings.js | 8 kB | 05 Dec 2025, 6:17:34 PM | |
| PIRFile.html | 120 kB | 05 Dec 2025, 6:17:33 PM | |
| PIRFile.js | 2 kB | 05 Dec 2025, 6:17:33 PM | |
| PfamFile.html | 131 kB | 05 Dec 2025, 6:17:34 PM | |
| PfamFile.js | 8 kB | 05 Dec 2025, 6:17:34 PM | |
| PfamFormatInputTest.html | 56 kB | 05 Dec 2025, 6:17:37 PM | |
| PfamFormatInputTest.js | 1.0 kB | 05 Dec 2025, 6:17:37 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_fg.html | 19 kB | 05 Dec 2025, 6:17:37 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_a2.html | 19 kB | 05 Dec 2025, 6:17:37 PM | |
| PhylipFile.html | 176 kB | 05 Dec 2025, 6:17:33 PM | |
| PhylipFile.js | 6 kB | 05 Dec 2025, 6:17:33 PM | |
| PhylipFileTests.html | 128 kB | 05 Dec 2025, 6:17:35 PM | |
| PhylipFileTests.js | 3 kB | 05 Dec 2025, 6:17:35 PM | |
| PhylipFileTests_testInterleavedDataExtraction_tk.html | 19 kB | 05 Dec 2025, 6:17:35 PM | |
| PhylipFileTests_testInterleavedIO_8a.html | 36 kB | 05 Dec 2025, 6:17:35 PM | |
| PhylipFileTests_testSequentialDataExtraction_5t.html | 35 kB | 05 Dec 2025, 6:17:35 PM | |
| PhylipFileTests_testSequentialIO_168.html | 19 kB | 05 Dec 2025, 6:17:35 PM | |
| PileUpfile.html | 112 kB | 05 Dec 2025, 6:17:34 PM | |
| PileUpfile.js | 2 kB | 05 Dec 2025, 6:17:34 PM | |
| RNAMLfileTest.html | 66 kB | 05 Dec 2025, 6:17:36 PM | |
| RNAMLfileTest.js | 1 kB | 05 Dec 2025, 6:17:36 PM | |
| RNAMLfileTest_testRnamlSeqImport_j7.html | 63 kB | 05 Dec 2025, 6:17:36 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_ha.html | 56 kB | 05 Dec 2025, 6:17:36 PM | |
| RnamlFile.html | 145 kB | 05 Dec 2025, 6:17:34 PM | |
| RnamlFile.js | 3 kB | 05 Dec 2025, 6:17:34 PM | |
| ScoreMatrixFile.html | 266 kB | 05 Dec 2025, 6:17:34 PM | |
| ScoreMatrixFile.js | 24 kB | 05 Dec 2025, 6:17:34 PM | |
| ScoreMatrixFileTest.html | 334 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest.js | 7 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_132.html | 19 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_6k.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_14x.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_bo.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_6i.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_up.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_172.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_14t.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_6b.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_es.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_i1.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_dq.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_140.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_1bv.html | 12 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_101.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_mf.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_15u.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_kc.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_is.html | 11 kB | 05 Dec 2025, 6:17:35 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_104.html | 12 kB | 05 Dec 2025, 6:17:35 PM | |
| SequenceAnnotationReport.html | 631 kB | 05 Dec 2025, 6:17:33 PM | |
| SequenceAnnotationReport.js | 41 kB | 05 Dec 2025, 6:17:33 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 05 Dec 2025, 6:17:35 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 05 Dec 2025, 6:17:35 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_d1.html | 23 kB | 05 Dec 2025, 6:17:36 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_f0.html | 26 kB | 05 Dec 2025, 6:17:36 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_v9.html | 9 kB | 05 Dec 2025, 6:17:35 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_1cd.html | 10 kB | 05 Dec 2025, 6:17:35 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_2o.html | 18 kB | 05 Dec 2025, 6:17:35 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_jw.html | 15 kB | 05 Dec 2025, 6:17:36 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_w6.html | 33 kB | 05 Dec 2025, 6:17:36 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_zj.html | 20 kB | 05 Dec 2025, 6:17:36 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_9j.html | 25 kB | 05 Dec 2025, 6:17:35 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_sx.html | 15 kB | 05 Dec 2025, 6:17:36 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_11q.html | 24 kB | 05 Dec 2025, 6:17:36 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_e2.html | 28 kB | 05 Dec 2025, 6:17:36 PM | |
| SimpleBlastFile.html | 152 kB | 05 Dec 2025, 6:17:34 PM | |
| SimpleBlastFile.js | 2 kB | 05 Dec 2025, 6:17:34 PM | |
| StockholmFile.html | 675 kB | 05 Dec 2025, 6:17:33 PM | |
| StockholmFile.js | 61 kB | 05 Dec 2025, 6:17:33 PM | |
| StockholmFileTest.html | 515 kB | 05 Dec 2025, 6:17:34 PM | |
| StockholmFileTest.js | 20 kB | 05 Dec 2025, 6:17:34 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_1b0.html | 70 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_dbrefOutput_6r.html | 41 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_descriptionLineOutput_7u.html | 38 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_detectWussBrackets_1cj.html | 7 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_10z.html | 49 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_pfamFileDataExtraction_8p.html | 46 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_pfamFileIO_5r.html | 51 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_rfamFileIO_31.html | 53 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_12k.html | 49 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_mv.html | 46 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_a8.html | 27 kB | 05 Dec 2025, 6:17:35 PM | |
| StockholmFileTest_testAnnotationEquivalence_wf.html | 13 kB | 05 Dec 2025, 6:17:35 PM | |
| StructureFile.html | 448 kB | 05 Dec 2025, 6:17:34 PM | |
| StructureFile.js | 97 kB | 05 Dec 2025, 6:17:34 PM | |
| TCoffeeScoreFile.html | 362 kB | 05 Dec 2025, 6:17:33 PM | |
| TCoffeeScoreFile.js | 14 kB | 05 Dec 2025, 6:17:33 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest_testGetAsArray_ag.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest_testGetAsList_jy.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_fl.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_69.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest_testParse_ml.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest_testReadBlock_io.html | 10 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest_testReadHeader_100.html | 12 kB | 05 Dec 2025, 6:17:36 PM | |
| TCoffeeScoreFileTest_testWrongFile_nz.html | 11 kB | 05 Dec 2025, 6:17:36 PM | |
| VamsasAppDatastore.html | 1.26 MB | 05 Dec 2025, 6:17:34 PM | |
| VamsasAppDatastore.js | 13 kB | 05 Dec 2025, 6:17:34 PM | |
| WSWUBlastClient.html | 177 kB | 05 Dec 2025, 6:17:33 PM | |
| WSWUBlastClient.js | 2 kB | 05 Dec 2025, 6:17:33 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 05 Dec 2025, 6:17:37 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 05 Dec 2025, 6:17:37 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_9d.html | 127 kB | 05 Dec 2025, 6:17:37 PM | |
| pkg-summary.html | 86 kB | 05 Dec 2025, 6:17:37 PM | |
| quick-wins.html | 32 kB | 05 Dec 2025, 6:17:37 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 05 Dec 2025, 6:17:23 PM | |
| test-AnnotationExporterTest.html | 9 kB | 05 Dec 2025, 6:17:23 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 05 Dec 2025, 6:17:23 PM | |
| test-BackupFilesTest.html | 11 kB | 05 Dec 2025, 6:17:23 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 05 Dec 2025, 6:17:23 PM | |
| test-ClustalFileTest.html | 9 kB | 05 Dec 2025, 6:17:23 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 05 Dec 2025, 6:17:23 PM | |
| test-EmblFlatFileTest.html | 11 kB | 05 Dec 2025, 6:17:23 PM | |
| test-FeaturesFileTest.html | 15 kB | 05 Dec 2025, 6:17:23 PM | |
| test-FileFormatsTest.html | 12 kB | 05 Dec 2025, 6:17:23 PM | |
| test-FileIOTester.html | 12 kB | 05 Dec 2025, 6:17:23 PM | |
| test-FileLoaderTest.html | 8 kB | 05 Dec 2025, 6:17:23 PM | |
| test-FormatAdapterTest.html | 13 kB | 05 Dec 2025, 6:17:23 PM | |
| test-GenBankFileTest.html | 9 kB | 05 Dec 2025, 6:17:23 PM | |
| test-HtmlFileTest.html | 8 kB | 05 Dec 2025, 6:17:23 PM | |
| test-IdentifyFileTest.html | 20 kB | 05 Dec 2025, 6:17:23 PM | |
| test-JSONFileTest.html | 13 kB | 05 Dec 2025, 6:17:23 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 05 Dec 2025, 6:17:23 PM | |
| test-JalviewFileChooserTest.html | 17 kB | 05 Dec 2025, 6:17:23 PM | |
| test-JalviewFileViewTest.html | 10 kB | 05 Dec 2025, 6:17:23 PM | |
| test-NewickFileTests.html | 10 kB | 05 Dec 2025, 6:17:23 PM | |
| test-PfamFormatInputTest.html | 9 kB | 05 Dec 2025, 6:17:23 PM | |
| test-PhylipFileTests.html | 10 kB | 05 Dec 2025, 6:17:23 PM | |
| test-RNAMLfileTest.html | 9 kB | 05 Dec 2025, 6:17:23 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 05 Dec 2025, 6:17:23 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 05 Dec 2025, 6:17:23 PM | |
| test-StockholmFileTest.html | 14 kB | 05 Dec 2025, 6:17:23 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 05 Dec 2025, 6:17:23 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 05 Dec 2025, 6:17:23 PM | |
| test-pkg-summary.html | 33 kB | 05 Dec 2025, 6:17:23 PM | |
| testsrc-pkg-summary.html | 46 kB | 05 Dec 2025, 6:17:37 PM | |
| top-risks.html | 33 kB | 05 Dec 2025, 6:17:37 PM |