None
Build files
Jalview Builds - Gradle Develop Build - bug-JAL-4603_Export_files_missing_part_of_sequence - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
|
cache | 03 Dec 2025, 4:09:23 PM | |
|
|
exceptions | 03 Dec 2025, 4:09:08 PM | |
|
|
gff | 03 Dec 2025, 4:09:22 PM | |
|
|
packed | 03 Dec 2025, 4:09:42 PM | |
|
|
vamsas | 03 Dec 2025, 4:09:01 PM | |
|
|
vcf | 03 Dec 2025, 4:09:22 PM | |
| A3mFile.html | 58 kB | 03 Dec 2025, 4:09:03 PM | |
| A3mFile.js | 1.0 kB | 03 Dec 2025, 4:09:03 PM | |
| AMSAFile.html | 80 kB | 03 Dec 2025, 4:09:03 PM | |
| AMSAFile.js | 1 kB | 03 Dec 2025, 4:09:03 PM | |
| AlignFile.html | 705 kB | 03 Dec 2025, 4:09:03 PM | |
| AlignFile.js | 222 kB | 03 Dec 2025, 4:09:03 PM | |
| AlignmentFileReaderI.html | 36 kB | 03 Dec 2025, 4:09:02 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 03 Dec 2025, 4:09:02 PM | |
| AlignmentFileWriterI.html | 34 kB | 03 Dec 2025, 4:09:03 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 03 Dec 2025, 4:09:03 PM | |
| AlignmentProperties.html | 94 kB | 03 Dec 2025, 4:09:02 PM | |
| AlignmentProperties.js | 1 kB | 03 Dec 2025, 4:09:02 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_2x.html | 14 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_16j.html | 14 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_59.html | 23 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_n0.html | 162 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotationExporterTest.html | 59 kB | 03 Dec 2025, 4:09:05 PM | |
| AnnotationExporterTest.js | 1 kB | 03 Dec 2025, 4:09:05 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_fz.html | 110 kB | 03 Dec 2025, 4:09:05 PM | |
| AnnotationFile.html | 1.01 MB | 03 Dec 2025, 4:09:03 PM | |
| AnnotationFile.js | 61 kB | 03 Dec 2025, 4:09:03 PM | |
| AnnotationFileIOTest.html | 241 kB | 03 Dec 2025, 4:09:06 PM | |
| AnnotationFileIOTest.js | 5 kB | 03 Dec 2025, 4:09:06 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_17l.html | 41 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_e9.html | 102 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotationFileIOTest_testCalcIdRestore_kn.html | 110 kB | 03 Dec 2025, 4:09:07 PM | |
| AnnotationFileIOTest_testProviderRestore_190.html | 111 kB | 03 Dec 2025, 4:09:07 PM | |
| AppletFormatAdapter.html | 679 kB | 03 Dec 2025, 4:09:02 PM | |
| AppletFormatAdapter.js | 129 kB | 03 Dec 2025, 4:09:02 PM | |
| BLCFile.html | 153 kB | 03 Dec 2025, 4:09:03 PM | |
| BLCFile.js | 3 kB | 03 Dec 2025, 4:09:03 PM | |
| BackupFilenameFilter.html | 68 kB | 03 Dec 2025, 4:09:02 PM | |
| BackupFilenameFilter.js | 3 kB | 03 Dec 2025, 4:09:02 PM | |
| BackupFilenameParts.html | 129 kB | 03 Dec 2025, 4:09:03 PM | |
| BackupFilenameParts.js | 7 kB | 03 Dec 2025, 4:09:03 PM | |
| BackupFiles.html | 600 kB | 03 Dec 2025, 4:09:02 PM | |
| BackupFiles.js | 58 kB | 03 Dec 2025, 4:09:02 PM | |
| BackupFilesPresetEntry.html | 155 kB | 03 Dec 2025, 4:09:03 PM | |
| BackupFilesPresetEntry.js | 15 kB | 03 Dec 2025, 4:09:03 PM | |
| BackupFilesTest.html | 296 kB | 03 Dec 2025, 4:09:07 PM | |
| BackupFilesTest.js | 9 kB | 03 Dec 2025, 4:09:07 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_17b.html | 110 kB | 03 Dec 2025, 4:09:07 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_2q.html | 109 kB | 03 Dec 2025, 4:09:07 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_14b.html | 110 kB | 03 Dec 2025, 4:09:07 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_pf.html | 101 kB | 03 Dec 2025, 4:09:07 PM | |
| BackupFilesTest_noBackupsEnabledTest_lp.html | 109 kB | 03 Dec 2025, 4:09:07 PM | |
| BioJsHTMLOutput.html | 280 kB | 03 Dec 2025, 4:09:03 PM | |
| BioJsHTMLOutput.js | 73 kB | 03 Dec 2025, 4:09:03 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 03 Dec 2025, 4:09:04 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 03 Dec 2025, 4:09:04 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_dk.html | 8 kB | 03 Dec 2025, 4:09:04 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_ik.html | 8 kB | 03 Dec 2025, 4:09:04 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_p6.html | 21 kB | 03 Dec 2025, 4:09:04 PM | |
| ClustalFile.html | 158 kB | 03 Dec 2025, 4:09:03 PM | |
| ClustalFile.js | 6 kB | 03 Dec 2025, 4:09:03 PM | |
| ClustalFileTest.html | 65 kB | 03 Dec 2025, 4:09:06 PM | |
| ClustalFileTest.js | 1 kB | 03 Dec 2025, 4:09:06 PM | |
| ClustalFileTest_testParse_noNumbering_11i.html | 14 kB | 03 Dec 2025, 4:09:06 PM | |
| ClustalFileTest_testParse_withNumbering_vr.html | 14 kB | 03 Dec 2025, 4:09:06 PM | |
| CrossRef2xmlTests.html | 327 kB | 03 Dec 2025, 4:09:04 PM | |
| CrossRef2xmlTests.js | 4 kB | 03 Dec 2025, 4:09:04 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_162.html | 181 kB | 03 Dec 2025, 4:09:04 PM | |
| DBRefFile.html | 43 kB | 03 Dec 2025, 4:09:03 PM | |
| DBRefFile.js | 0.6 kB | 03 Dec 2025, 4:09:03 PM | |
| DataSourceType.html | 269 kB | 03 Dec 2025, 4:09:02 PM | |
| DataSourceType.js | 25 kB | 03 Dec 2025, 4:09:02 PM | |
| EMBLLikeFlatFile.html | 429 kB | 03 Dec 2025, 4:09:03 PM | |
| EMBLLikeFlatFile.js | 17 kB | 03 Dec 2025, 4:09:03 PM | |
| EmblFlatFile.html | 134 kB | 03 Dec 2025, 4:09:02 PM | |
| EmblFlatFile.js | 4 kB | 03 Dec 2025, 4:09:02 PM | |
| EmblFlatFileTest.html | 229 kB | 03 Dec 2025, 4:09:06 PM | |
| EmblFlatFileTest.js | 5 kB | 03 Dec 2025, 4:09:06 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_2.html | 12 kB | 03 Dec 2025, 4:09:06 PM | |
| EmblFlatFileTest_testParseToRNA_6j.html | 23 kB | 03 Dec 2025, 4:09:06 PM | |
| EmblFlatFileTest_testParse_1a3.html | 23 kB | 03 Dec 2025, 4:09:06 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_h0.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_76.html | 22 kB | 03 Dec 2025, 4:09:06 PM | |
| EmblFlatFileTest_testRemoveQuotes_j2.html | 12 kB | 03 Dec 2025, 4:09:06 PM | |
| FastaFile.html | 427 kB | 03 Dec 2025, 4:09:04 PM | |
| FastaFile.js | 111 kB | 03 Dec 2025, 4:09:04 PM | |
| FeaturesFile.html | 765 kB | 03 Dec 2025, 4:09:03 PM | |
| FeaturesFile.js | 27 kB | 03 Dec 2025, 4:09:03 PM | |
| FeaturesFileTest.html | 522 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest.js | 13 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_readGff3File_13p.html | 47 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_simpleGff3FileClass_fm.html | 34 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_simpleGff3FileLoader_174.html | 117 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_t7.html | 34 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testOutputFeatureFilters_123.html | 14 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testParseFilters_10p.html | 14 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testParse_1an.html | 115 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_r2.html | 92 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_11g.html | 119 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testParse_pureGff3_fe.html | 98 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testPrintGffFormat_mn.html | 108 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_1j.html | 117 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testPrintJalviewFormat_115.html | 93 kB | 03 Dec 2025, 4:09:06 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_2o.html | 117 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormat.html | 817 kB | 03 Dec 2025, 4:09:03 PM | |
| FileFormat.js | 81 kB | 03 Dec 2025, 4:09:03 PM | |
| FileFormatException.html | 58 kB | 03 Dec 2025, 4:09:03 PM | |
| FileFormatException.js | 2 kB | 03 Dec 2025, 4:09:03 PM | |
| FileFormatI.html | 46 kB | 03 Dec 2025, 4:09:02 PM | |
| FileFormatI.js | 0.7 kB | 03 Dec 2025, 4:09:02 PM | |
| FileFormats.html | 464 kB | 03 Dec 2025, 4:09:02 PM | |
| FileFormats.js | 72 kB | 03 Dec 2025, 4:09:02 PM | |
| FileFormatsTest.html | 137 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormatsTest.js | 3 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormatsTest_testDeregisterFileFormat_112.html | 9 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormatsTest_testForName_iv.html | 9 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormatsTest_testGetFormats_mj.html | 9 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormatsTest_testGetReadableFormats_qu.html | 9 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormatsTest_testGetWritableFormats_5u.html | 9 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormatsTest_testIsIdentifiable_166.html | 9 kB | 03 Dec 2025, 4:09:06 PM | |
| FileFormatsTest_testRegisterFileFormat_dg.html | 9 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester.html | 130 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester.js | 3 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester_testGzipIo_9x.html | 12 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester_testGziplocalFileIO_p0.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester_testIsGzipInputStream_h1.html | 12 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester_testNonGzipURLIO_fc.html | 12 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester_testNonGziplocalFileIO_17j.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester_testStarsInFasta1_j7.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| FileIOTester_testStarsInFasta2_p7.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| FileLoader.html | 601 kB | 03 Dec 2025, 4:09:03 PM | |
| FileLoader.js | 250 kB | 03 Dec 2025, 4:09:03 PM | |
| FileLoaderTest.html | 37 kB | 03 Dec 2025, 4:09:07 PM | |
| FileLoaderTest.js | 0.6 kB | 03 Dec 2025, 4:09:07 PM | |
| FileParse.html | 926 kB | 03 Dec 2025, 4:09:03 PM | |
| FileParse.js | 338 kB | 03 Dec 2025, 4:09:03 PM | |
| FormatAdapter.html | 457 kB | 03 Dec 2025, 4:09:02 PM | |
| FormatAdapter.js | 55 kB | 03 Dec 2025, 4:09:02 PM | |
| FormatAdapterTest.html | 112 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest.js | 5 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_12n.html | 27 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_13u.html | 21 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_5l.html | 22 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_bi.html | 21 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_gl.html | 23 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_h8.html | 25 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_kd.html | 22 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_sk.html | 34 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_v6.html | 21 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_yc.html | 46 kB | 03 Dec 2025, 4:09:05 PM | |
| FormatAdapterTest_testRoundTrip_zx.html | 28 kB | 03 Dec 2025, 4:09:05 PM | |
| GenBankFile.html | 121 kB | 03 Dec 2025, 4:09:02 PM | |
| GenBankFile.js | 2 kB | 03 Dec 2025, 4:09:02 PM | |
| GenBankFileTest.html | 132 kB | 03 Dec 2025, 4:09:05 PM | |
| GenBankFileTest.js | 3 kB | 03 Dec 2025, 4:09:05 PM | |
| GenBankFileTest_testParse_nz.html | 19 kB | 03 Dec 2025, 4:09:05 PM | |
| HTMLOutput.html | 197 kB | 03 Dec 2025, 4:09:03 PM | |
| HTMLOutput.js | 2 kB | 03 Dec 2025, 4:09:03 PM | |
| HtmlFile.html | 132 kB | 03 Dec 2025, 4:09:03 PM | |
| HtmlFile.js | 2 kB | 03 Dec 2025, 4:09:03 PM | |
| HtmlFileTest.html | 39 kB | 03 Dec 2025, 4:09:06 PM | |
| HtmlFileTest.js | 0.6 kB | 03 Dec 2025, 4:09:06 PM | |
| HtmlSvgOutput.html | 173 kB | 03 Dec 2025, 4:09:02 PM | |
| HtmlSvgOutput.js | 2 kB | 03 Dec 2025, 4:09:02 PM | |
| IdentifyFile.html | 591 kB | 03 Dec 2025, 4:09:03 PM | |
| IdentifyFile.js | 238 kB | 03 Dec 2025, 4:09:03 PM | |
| IdentifyFileTest.html | 150 kB | 03 Dec 2025, 4:09:03 PM | |
| IdentifyFileTest.js | 5 kB | 03 Dec 2025, 4:09:03 PM | |
| IdentifyFileTest_testIdentify_13i.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_13q.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_14o.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_1df.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_1l.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_5f.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_86.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_8a.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_8j.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_al.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_c1.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_featureFile_31.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_gm.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_gt.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_gu.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_jg.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_o5.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_ok.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_pl.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_q9.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_qy.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_tl.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testIdentify_we.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_d6.html | 8 kB | 03 Dec 2025, 4:09:04 PM | |
| InputStreamParser.html | 44 kB | 03 Dec 2025, 4:09:03 PM | |
| InputStreamParser.js | 0.6 kB | 03 Dec 2025, 4:09:03 PM | |
| IntKeyStringValueEntry.html | 44 kB | 03 Dec 2025, 4:09:03 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 03 Dec 2025, 4:09:03 PM | |
| JPredFile.html | 220 kB | 03 Dec 2025, 4:09:03 PM | |
| JPredFile.js | 2 kB | 03 Dec 2025, 4:09:03 PM | |
| JSONFile.html | 508 kB | 03 Dec 2025, 4:09:02 PM | |
| JSONFile.js | 14 kB | 03 Dec 2025, 4:09:02 PM | |
| JSONFileTest.html | 364 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest.js | 6 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_colorSchemeTest_v0.html | 8 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_hiddenColsTest_le.html | 10 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_hiddenSeqsTest_k6.html | 8 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_isShowSeqFeaturesSet_4.html | 8 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_roundTripTest_1bi.html | 7 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_testAnnotationParsed_po.html | 8 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_ko.html | 105 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_testGrpParsed_16s.html | 10 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_testGrpParsed_colourNone_t5.html | 117 kB | 03 Dec 2025, 4:09:05 PM | |
| JSONFileTest_testSeqParsed_qd.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| Jalview2xmlBase.html | 78 kB | 03 Dec 2025, 4:09:05 PM | |
| Jalview2xmlBase.js | 1 kB | 03 Dec 2025, 4:09:05 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 03 Dec 2025, 4:09:05 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 03 Dec 2025, 4:09:05 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_171.html | 139 kB | 03 Dec 2025, 4:09:05 PM | |
| JalviewFileChooser.html | 642 kB | 03 Dec 2025, 4:09:03 PM | |
| JalviewFileChooser.js | 136 kB | 03 Dec 2025, 4:09:03 PM | |
| JalviewFileChooserTest.html | 108 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest.js | 6 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_10c.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_15y.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_180.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_3a.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5q.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_9g.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ac.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_b9.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_c0.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fk.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_jl.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_jw.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ki.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_m7.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_mo.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_no.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qg.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qm.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qo.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_vx.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_wp.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| JalviewFileFilter.html | 245 kB | 03 Dec 2025, 4:09:03 PM | |
| JalviewFileFilter.js | 63 kB | 03 Dec 2025, 4:09:03 PM | |
| JalviewFileView.html | 115 kB | 03 Dec 2025, 4:09:03 PM | |
| JalviewFileView.js | 2 kB | 03 Dec 2025, 4:09:03 PM | |
| JalviewFileViewTest.html | 90 kB | 03 Dec 2025, 4:09:05 PM | |
| JalviewFileViewTest.js | 2 kB | 03 Dec 2025, 4:09:05 PM | |
| JalviewFileViewTest_testGetExtension_3f.html | 8 kB | 03 Dec 2025, 4:09:05 PM | |
| JalviewFileViewTest_testGetImageIcon_17h.html | 9 kB | 03 Dec 2025, 4:09:05 PM | |
| JalviewFileViewTest_testGetTypeDescription_wq.html | 10 kB | 03 Dec 2025, 4:09:05 PM | |
| JnetAnnotationMaker.html | 126 kB | 03 Dec 2025, 4:09:03 PM | |
| JnetAnnotationMaker.js | 1 kB | 03 Dec 2025, 4:09:03 PM | |
| MSFfile.html | 212 kB | 03 Dec 2025, 4:09:03 PM | |
| MSFfile.js | 5 kB | 03 Dec 2025, 4:09:03 PM | |
| ModellerDescription.html | 236 kB | 03 Dec 2025, 4:09:02 PM | |
| ModellerDescription.js | 3 kB | 03 Dec 2025, 4:09:02 PM | |
| NewickFile.html | 529 kB | 03 Dec 2025, 4:09:03 PM | |
| NewickFile.js | 38 kB | 03 Dec 2025, 4:09:03 PM | |
| NewickFileTests.html | 121 kB | 03 Dec 2025, 4:09:05 PM | |
| NewickFileTests.js | 3 kB | 03 Dec 2025, 4:09:05 PM | |
| NewickFileTests_testTreeIO_13j.html | 33 kB | 03 Dec 2025, 4:09:05 PM | |
| NewickFileTests_testTreeIO_4l.html | 35 kB | 03 Dec 2025, 4:09:05 PM | |
| NewickFileTests_testTreeIO_7a.html | 34 kB | 03 Dec 2025, 4:09:05 PM | |
| PContactPredictionFile.html | 101 kB | 03 Dec 2025, 4:09:03 PM | |
| PContactPredictionFile.js | 1 kB | 03 Dec 2025, 4:09:03 PM | |
| PDBFeatureSettings.html | 121 kB | 03 Dec 2025, 4:09:03 PM | |
| PDBFeatureSettings.js | 8 kB | 03 Dec 2025, 4:09:03 PM | |
| PIRFile.html | 120 kB | 03 Dec 2025, 4:09:02 PM | |
| PIRFile.js | 2 kB | 03 Dec 2025, 4:09:02 PM | |
| PfamFile.html | 131 kB | 03 Dec 2025, 4:09:03 PM | |
| PfamFile.js | 8 kB | 03 Dec 2025, 4:09:03 PM | |
| PfamFormatInputTest.html | 56 kB | 03 Dec 2025, 4:09:07 PM | |
| PfamFormatInputTest.js | 1.0 kB | 03 Dec 2025, 4:09:07 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_130.html | 21 kB | 03 Dec 2025, 4:09:07 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_cv.html | 21 kB | 03 Dec 2025, 4:09:07 PM | |
| PhylipFile.html | 176 kB | 03 Dec 2025, 4:09:02 PM | |
| PhylipFile.js | 6 kB | 03 Dec 2025, 4:09:02 PM | |
| PhylipFileTests.html | 128 kB | 03 Dec 2025, 4:09:04 PM | |
| PhylipFileTests.js | 3 kB | 03 Dec 2025, 4:09:04 PM | |
| PhylipFileTests_testInterleavedDataExtraction_ov.html | 23 kB | 03 Dec 2025, 4:09:04 PM | |
| PhylipFileTests_testInterleavedIO_xw.html | 23 kB | 03 Dec 2025, 4:09:04 PM | |
| PhylipFileTests_testSequentialDataExtraction_p.html | 22 kB | 03 Dec 2025, 4:09:04 PM | |
| PhylipFileTests_testSequentialIO_ee.html | 19 kB | 03 Dec 2025, 4:09:04 PM | |
| PileUpfile.html | 112 kB | 03 Dec 2025, 4:09:03 PM | |
| PileUpfile.js | 2 kB | 03 Dec 2025, 4:09:03 PM | |
| RNAMLfileTest.html | 66 kB | 03 Dec 2025, 4:09:06 PM | |
| RNAMLfileTest.js | 1 kB | 03 Dec 2025, 4:09:06 PM | |
| RNAMLfileTest_testRnamlSeqImport_ve.html | 58 kB | 03 Dec 2025, 4:09:06 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_v3.html | 49 kB | 03 Dec 2025, 4:09:06 PM | |
| RnamlFile.html | 145 kB | 03 Dec 2025, 4:09:03 PM | |
| RnamlFile.js | 3 kB | 03 Dec 2025, 4:09:03 PM | |
| ScoreMatrixFile.html | 266 kB | 03 Dec 2025, 4:09:03 PM | |
| ScoreMatrixFile.js | 24 kB | 03 Dec 2025, 4:09:03 PM | |
| ScoreMatrixFileTest.html | 334 kB | 03 Dec 2025, 4:09:04 PM | |
| ScoreMatrixFileTest.js | 7 kB | 03 Dec 2025, 4:09:04 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_d4.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_107.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_136.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_64.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_us.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_1b3.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_7r.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_h4.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_y.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_pz.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_qx.html | 17 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_he.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_151.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_1d.html | 12 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_fs.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_xn.html | 12 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_oj.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_ja.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_dq.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_r4.html | 12 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReport.html | 631 kB | 03 Dec 2025, 4:09:02 PM | |
| SequenceAnnotationReport.js | 41 kB | 03 Dec 2025, 4:09:02 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_td.html | 10 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_1t.html | 14 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_th.html | 9 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_e.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_19u.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_bp.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_ab.html | 18 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_rp.html | 14 kB | 03 Dec 2025, 4:09:06 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_rh.html | 11 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_2y.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_18t.html | 18 kB | 03 Dec 2025, 4:09:05 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_84.html | 14 kB | 03 Dec 2025, 4:09:06 PM | |
| SimpleBlastFile.html | 152 kB | 03 Dec 2025, 4:09:03 PM | |
| SimpleBlastFile.js | 2 kB | 03 Dec 2025, 4:09:03 PM | |
| StockholmFile.html | 675 kB | 03 Dec 2025, 4:09:02 PM | |
| StockholmFile.js | 61 kB | 03 Dec 2025, 4:09:02 PM | |
| StockholmFileTest.html | 515 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest.js | 20 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_14s.html | 53 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_dbrefOutput_116.html | 41 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_descriptionLineOutput_q.html | 41 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_detectWussBrackets_1br.html | 11 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_gs.html | 50 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_pfamFileDataExtraction_o4.html | 57 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_pfamFileIO_py.html | 48 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_rfamFileIO_tc.html | 52 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_85.html | 49 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_18o.html | 46 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_41.html | 27 kB | 03 Dec 2025, 4:09:04 PM | |
| StockholmFileTest_testAnnotationEquivalence_12d.html | 12 kB | 03 Dec 2025, 4:09:04 PM | |
| StructureFile.html | 445 kB | 03 Dec 2025, 4:09:03 PM | |
| StructureFile.js | 96 kB | 03 Dec 2025, 4:09:03 PM | |
| TCoffeeScoreFile.html | 362 kB | 03 Dec 2025, 4:09:02 PM | |
| TCoffeeScoreFile.js | 14 kB | 03 Dec 2025, 4:09:02 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest_testGetAsArray_14y.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest_testGetAsList_nk.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_ii.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_7i.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest_testParse_au.html | 11 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest_testReadBlock_1v.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest_testReadHeader_78.html | 12 kB | 03 Dec 2025, 4:09:06 PM | |
| TCoffeeScoreFileTest_testWrongFile_ld.html | 10 kB | 03 Dec 2025, 4:09:06 PM | |
| VamsasAppDatastore.html | 1.26 MB | 03 Dec 2025, 4:09:03 PM | |
| VamsasAppDatastore.js | 13 kB | 03 Dec 2025, 4:09:03 PM | |
| WSWUBlastClient.html | 177 kB | 03 Dec 2025, 4:09:02 PM | |
| WSWUBlastClient.js | 2 kB | 03 Dec 2025, 4:09:02 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 03 Dec 2025, 4:09:07 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 03 Dec 2025, 4:09:07 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_xk.html | 113 kB | 03 Dec 2025, 4:09:07 PM | |
| pkg-summary.html | 86 kB | 03 Dec 2025, 4:09:07 PM | |
| quick-wins.html | 32 kB | 03 Dec 2025, 4:09:07 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 03 Dec 2025, 4:08:48 PM | |
| test-AnnotationExporterTest.html | 9 kB | 03 Dec 2025, 4:08:48 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 03 Dec 2025, 4:08:48 PM | |
| test-BackupFilesTest.html | 11 kB | 03 Dec 2025, 4:08:48 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 03 Dec 2025, 4:08:48 PM | |
| test-ClustalFileTest.html | 9 kB | 03 Dec 2025, 4:08:48 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 03 Dec 2025, 4:08:48 PM | |
| test-EmblFlatFileTest.html | 11 kB | 03 Dec 2025, 4:08:48 PM | |
| test-FeaturesFileTest.html | 15 kB | 03 Dec 2025, 4:08:48 PM | |
| test-FileFormatsTest.html | 12 kB | 03 Dec 2025, 4:08:48 PM | |
| test-FileIOTester.html | 12 kB | 03 Dec 2025, 4:08:48 PM | |
| test-FileLoaderTest.html | 8 kB | 03 Dec 2025, 4:08:48 PM | |
| test-FormatAdapterTest.html | 13 kB | 03 Dec 2025, 4:08:48 PM | |
| test-GenBankFileTest.html | 9 kB | 03 Dec 2025, 4:08:48 PM | |
| test-HtmlFileTest.html | 8 kB | 03 Dec 2025, 4:08:48 PM | |
| test-IdentifyFileTest.html | 20 kB | 03 Dec 2025, 4:08:48 PM | |
| test-JSONFileTest.html | 13 kB | 03 Dec 2025, 4:08:48 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 03 Dec 2025, 4:08:48 PM | |
| test-JalviewFileChooserTest.html | 19 kB | 03 Dec 2025, 4:08:48 PM | |
| test-JalviewFileViewTest.html | 10 kB | 03 Dec 2025, 4:08:48 PM | |
| test-NewickFileTests.html | 10 kB | 03 Dec 2025, 4:08:48 PM | |
| test-PfamFormatInputTest.html | 9 kB | 03 Dec 2025, 4:08:48 PM | |
| test-PhylipFileTests.html | 10 kB | 03 Dec 2025, 4:08:48 PM | |
| test-RNAMLfileTest.html | 9 kB | 03 Dec 2025, 4:08:48 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 03 Dec 2025, 4:08:48 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 03 Dec 2025, 4:08:48 PM | |
| test-StockholmFileTest.html | 14 kB | 03 Dec 2025, 4:08:48 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 03 Dec 2025, 4:08:48 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 03 Dec 2025, 4:08:48 PM | |
| test-pkg-summary.html | 33 kB | 03 Dec 2025, 4:08:48 PM | |
| testsrc-pkg-summary.html | 46 kB | 03 Dec 2025, 4:09:07 PM | |
| top-risks.html | 33 kB | 03 Dec 2025, 4:09:07 PM |