Build and run tests under Java 11
None
Build files
Jalview Builds - Gradle Develop Build - development-Release_2_11_5_Branch - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
|
cache | 08 Dec 2025, 1:44:56 PM | |
|
|
exceptions | 08 Dec 2025, 1:44:43 PM | |
|
|
gff | 08 Dec 2025, 1:44:56 PM | |
|
|
packed | 08 Dec 2025, 1:45:13 PM | |
|
|
vamsas | 08 Dec 2025, 1:44:38 PM | |
|
|
vcf | 08 Dec 2025, 1:44:55 PM | |
| A3mFile.html | 58 kB | 08 Dec 2025, 1:44:39 PM | |
| A3mFile.js | 1.0 kB | 08 Dec 2025, 1:44:39 PM | |
| AMSAFile.html | 80 kB | 08 Dec 2025, 1:44:39 PM | |
| AMSAFile.js | 1 kB | 08 Dec 2025, 1:44:39 PM | |
| AlignFile.html | 706 kB | 08 Dec 2025, 1:44:39 PM | |
| AlignFile.js | 223 kB | 08 Dec 2025, 1:44:39 PM | |
| AlignmentFileReaderI.html | 36 kB | 08 Dec 2025, 1:44:39 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 08 Dec 2025, 1:44:39 PM | |
| AlignmentFileWriterI.html | 34 kB | 08 Dec 2025, 1:44:39 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 08 Dec 2025, 1:44:39 PM | |
| AlignmentProperties.html | 94 kB | 08 Dec 2025, 1:44:39 PM | |
| AlignmentProperties.js | 1 kB | 08 Dec 2025, 1:44:39 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_ta.html | 19 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_zt.html | 15 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_155.html | 13 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_mm.html | 162 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotationExporterTest.html | 59 kB | 08 Dec 2025, 1:44:41 PM | |
| AnnotationExporterTest.js | 1 kB | 08 Dec 2025, 1:44:41 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_88.html | 110 kB | 08 Dec 2025, 1:44:41 PM | |
| AnnotationFile.html | 1.01 MB | 08 Dec 2025, 1:44:39 PM | |
| AnnotationFile.js | 60 kB | 08 Dec 2025, 1:44:39 PM | |
| AnnotationFileIOTest.html | 241 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotationFileIOTest.js | 5 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_16j.html | 41 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_4j.html | 97 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotationFileIOTest_testCalcIdRestore_i4.html | 110 kB | 08 Dec 2025, 1:44:42 PM | |
| AnnotationFileIOTest_testProviderRestore_p0.html | 110 kB | 08 Dec 2025, 1:44:42 PM | |
| AppletFormatAdapter.html | 680 kB | 08 Dec 2025, 1:44:39 PM | |
| AppletFormatAdapter.js | 129 kB | 08 Dec 2025, 1:44:39 PM | |
| BLCFile.html | 153 kB | 08 Dec 2025, 1:44:39 PM | |
| BLCFile.js | 3 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFilenameFilter.html | 68 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFilenameFilter.js | 3 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFilenameParts.html | 129 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFilenameParts.js | 7 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFiles.html | 600 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFiles.js | 59 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFilesPresetEntry.html | 155 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFilesPresetEntry.js | 16 kB | 08 Dec 2025, 1:44:39 PM | |
| BackupFilesTest.html | 296 kB | 08 Dec 2025, 1:44:42 PM | |
| BackupFilesTest.js | 10 kB | 08 Dec 2025, 1:44:42 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_ek.html | 110 kB | 08 Dec 2025, 1:44:42 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_nv.html | 109 kB | 08 Dec 2025, 1:44:42 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_1a1.html | 110 kB | 08 Dec 2025, 1:44:42 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_wu.html | 96 kB | 08 Dec 2025, 1:44:42 PM | |
| BackupFilesTest_noBackupsEnabledTest_sc.html | 109 kB | 08 Dec 2025, 1:44:42 PM | |
| BioJsHTMLOutput.html | 280 kB | 08 Dec 2025, 1:44:39 PM | |
| BioJsHTMLOutput.js | 73 kB | 08 Dec 2025, 1:44:39 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 08 Dec 2025, 1:44:40 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 08 Dec 2025, 1:44:40 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_qi.html | 8 kB | 08 Dec 2025, 1:44:40 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_mf.html | 8 kB | 08 Dec 2025, 1:44:40 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_4c.html | 23 kB | 08 Dec 2025, 1:44:40 PM | |
| ClustalFile.html | 158 kB | 08 Dec 2025, 1:44:39 PM | |
| ClustalFile.js | 6 kB | 08 Dec 2025, 1:44:39 PM | |
| ClustalFileTest.html | 65 kB | 08 Dec 2025, 1:44:42 PM | |
| ClustalFileTest.js | 1 kB | 08 Dec 2025, 1:44:42 PM | |
| ClustalFileTest_testParse_noNumbering_18e.html | 14 kB | 08 Dec 2025, 1:44:42 PM | |
| ClustalFileTest_testParse_withNumbering_it.html | 14 kB | 08 Dec 2025, 1:44:42 PM | |
| CrossRef2xmlTests.html | 327 kB | 08 Dec 2025, 1:44:40 PM | |
| CrossRef2xmlTests.js | 4 kB | 08 Dec 2025, 1:44:40 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_5g.html | 181 kB | 08 Dec 2025, 1:44:40 PM | |
| DBRefFile.html | 43 kB | 08 Dec 2025, 1:44:39 PM | |
| DBRefFile.js | 0.6 kB | 08 Dec 2025, 1:44:39 PM | |
| DataSourceType.html | 269 kB | 08 Dec 2025, 1:44:39 PM | |
| DataSourceType.js | 25 kB | 08 Dec 2025, 1:44:39 PM | |
| EMBLLikeFlatFile.html | 429 kB | 08 Dec 2025, 1:44:39 PM | |
| EMBLLikeFlatFile.js | 17 kB | 08 Dec 2025, 1:44:39 PM | |
| EmblFlatFile.html | 134 kB | 08 Dec 2025, 1:44:39 PM | |
| EmblFlatFile.js | 4 kB | 08 Dec 2025, 1:44:39 PM | |
| EmblFlatFileTest.html | 229 kB | 08 Dec 2025, 1:44:42 PM | |
| EmblFlatFileTest.js | 5 kB | 08 Dec 2025, 1:44:42 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_j4.html | 12 kB | 08 Dec 2025, 1:44:42 PM | |
| EmblFlatFileTest_testParseToRNA_63.html | 23 kB | 08 Dec 2025, 1:44:42 PM | |
| EmblFlatFileTest_testParse_143.html | 23 kB | 08 Dec 2025, 1:44:42 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_mr.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_uf.html | 22 kB | 08 Dec 2025, 1:44:42 PM | |
| EmblFlatFileTest_testRemoveQuotes_g7.html | 12 kB | 08 Dec 2025, 1:44:42 PM | |
| FastaFile.html | 428 kB | 08 Dec 2025, 1:44:39 PM | |
| FastaFile.js | 112 kB | 08 Dec 2025, 1:44:39 PM | |
| FeaturesFile.html | 765 kB | 08 Dec 2025, 1:44:39 PM | |
| FeaturesFile.js | 28 kB | 08 Dec 2025, 1:44:39 PM | |
| FeaturesFileTest.html | 522 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest.js | 13 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_readGff3File_si.html | 38 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_simpleGff3FileClass_1ah.html | 36 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_simpleGff3FileLoader_14o.html | 110 kB | 08 Dec 2025, 1:44:42 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_a4.html | 36 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testOutputFeatureFilters_31.html | 17 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testParseFilters_9u.html | 18 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testParse_17a.html | 116 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_7t.html | 105 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_12b.html | 120 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testParse_pureGff3_18k.html | 97 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testPrintGffFormat_rf.html | 116 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_1b6.html | 109 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testPrintJalviewFormat_19p.html | 112 kB | 08 Dec 2025, 1:44:41 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_uu.html | 110 kB | 08 Dec 2025, 1:44:41 PM | |
| FileFormat.html | 824 kB | 08 Dec 2025, 1:44:39 PM | |
| FileFormat.js | 82 kB | 08 Dec 2025, 1:44:39 PM | |
| FileFormatException.html | 58 kB | 08 Dec 2025, 1:44:39 PM | |
| FileFormatException.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| FileFormatI.html | 46 kB | 08 Dec 2025, 1:44:39 PM | |
| FileFormatI.js | 0.7 kB | 08 Dec 2025, 1:44:39 PM | |
| FileFormats.html | 467 kB | 08 Dec 2025, 1:44:39 PM | |
| FileFormats.js | 72 kB | 08 Dec 2025, 1:44:39 PM | |
| FileFormatsTest.html | 137 kB | 08 Dec 2025, 1:44:41 PM | |
| FileFormatsTest.js | 3 kB | 08 Dec 2025, 1:44:41 PM | |
| FileFormatsTest_testDeregisterFileFormat_ba.html | 9 kB | 08 Dec 2025, 1:44:42 PM | |
| FileFormatsTest_testForName_nz.html | 9 kB | 08 Dec 2025, 1:44:42 PM | |
| FileFormatsTest_testGetFormats_17d.html | 9 kB | 08 Dec 2025, 1:44:42 PM | |
| FileFormatsTest_testGetReadableFormats_76.html | 9 kB | 08 Dec 2025, 1:44:42 PM | |
| FileFormatsTest_testGetWritableFormats_fg.html | 9 kB | 08 Dec 2025, 1:44:42 PM | |
| FileFormatsTest_testIsIdentifiable_oa.html | 9 kB | 08 Dec 2025, 1:44:42 PM | |
| FileFormatsTest_testRegisterFileFormat_ul.html | 9 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester.html | 130 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester.js | 3 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester_testGzipIo_ti.html | 12 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester_testGziplocalFileIO_t.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester_testIsGzipInputStream_so.html | 12 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester_testNonGzipURLIO_4i.html | 12 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester_testNonGziplocalFileIO_zb.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester_testStarsInFasta1_97.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| FileIOTester_testStarsInFasta2_7m.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| FileLoader.html | 601 kB | 08 Dec 2025, 1:44:39 PM | |
| FileLoader.js | 250 kB | 08 Dec 2025, 1:44:39 PM | |
| FileLoaderTest.html | 37 kB | 08 Dec 2025, 1:44:42 PM | |
| FileLoaderTest.js | 0.6 kB | 08 Dec 2025, 1:44:42 PM | |
| FileParse.html | 927 kB | 08 Dec 2025, 1:44:39 PM | |
| FileParse.js | 339 kB | 08 Dec 2025, 1:44:39 PM | |
| FormatAdapter.html | 458 kB | 08 Dec 2025, 1:44:39 PM | |
| FormatAdapter.js | 56 kB | 08 Dec 2025, 1:44:39 PM | |
| FormatAdapterTest.html | 112 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest.js | 5 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_16y.html | 23 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_17n.html | 23 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_1bb.html | 31 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_4x.html | 21 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_4z.html | 42 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_7h.html | 22 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_hl.html | 22 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_ki.html | 22 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_ln.html | 21 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_mu.html | 22 kB | 08 Dec 2025, 1:44:41 PM | |
| FormatAdapterTest_testRoundTrip_q.html | 21 kB | 08 Dec 2025, 1:44:41 PM | |
| GenBankFile.html | 121 kB | 08 Dec 2025, 1:44:39 PM | |
| GenBankFile.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| GenBankFileTest.html | 133 kB | 08 Dec 2025, 1:44:41 PM | |
| GenBankFileTest.js | 3 kB | 08 Dec 2025, 1:44:41 PM | |
| GenBankFileTest_testParse_1c9.html | 19 kB | 08 Dec 2025, 1:44:41 PM | |
| HTMLOutput.html | 197 kB | 08 Dec 2025, 1:44:39 PM | |
| HTMLOutput.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| HtmlFile.html | 132 kB | 08 Dec 2025, 1:44:39 PM | |
| HtmlFile.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| HtmlFileTest.html | 39 kB | 08 Dec 2025, 1:44:42 PM | |
| HtmlFileTest.js | 0.6 kB | 08 Dec 2025, 1:44:42 PM | |
| HtmlSvgOutput.html | 173 kB | 08 Dec 2025, 1:44:39 PM | |
| HtmlSvgOutput.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| IdentifyFile.html | 591 kB | 08 Dec 2025, 1:44:39 PM | |
| IdentifyFile.js | 238 kB | 08 Dec 2025, 1:44:39 PM | |
| IdentifyFileTest.html | 150 kB | 08 Dec 2025, 1:44:39 PM | |
| IdentifyFileTest.js | 5 kB | 08 Dec 2025, 1:44:39 PM | |
| IdentifyFileTest_testIdentify_12h.html | 11 kB | 08 Dec 2025, 1:44:39 PM | |
| IdentifyFileTest_testIdentify_13l.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_16w.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_17k.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_18s.html | 13 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_3.html | 11 kB | 08 Dec 2025, 1:44:39 PM | |
| IdentifyFileTest_testIdentify_3t.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_4b.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_7f.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_ai.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_b.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_bc.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_featureFile_6y.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_h4.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_hu.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_hz.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_mv.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_n0.html | 11 kB | 08 Dec 2025, 1:44:39 PM | |
| IdentifyFileTest_testIdentify_np.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_or.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_q2.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_r1.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testIdentify_s0.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_xz.html | 8 kB | 08 Dec 2025, 1:44:40 PM | |
| InputStreamParser.html | 44 kB | 08 Dec 2025, 1:44:39 PM | |
| InputStreamParser.js | 0.6 kB | 08 Dec 2025, 1:44:39 PM | |
| IntKeyStringValueEntry.html | 44 kB | 08 Dec 2025, 1:44:39 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 08 Dec 2025, 1:44:39 PM | |
| JPredFile.html | 220 kB | 08 Dec 2025, 1:44:39 PM | |
| JPredFile.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| JSONFile.html | 508 kB | 08 Dec 2025, 1:44:39 PM | |
| JSONFile.js | 14 kB | 08 Dec 2025, 1:44:39 PM | |
| JSONFileTest.html | 364 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest.js | 6 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest_colorSchemeTest_5x.html | 8 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest_hiddenColsTest_38.html | 10 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest_hiddenSeqsTest_cs.html | 8 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest_isShowSeqFeaturesSet_n.html | 8 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest_roundTripTest_yl.html | 7 kB | 08 Dec 2025, 1:44:41 PM | |
| JSONFileTest_testAnnotationParsed_1ab.html | 8 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_7b.html | 104 kB | 08 Dec 2025, 1:44:41 PM | |
| JSONFileTest_testGrpParsed_115.html | 10 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest_testGrpParsed_colourNone_1cd.html | 116 kB | 08 Dec 2025, 1:44:40 PM | |
| JSONFileTest_testSeqParsed_qr.html | 19 kB | 08 Dec 2025, 1:44:41 PM | |
| Jalview2xmlBase.html | 78 kB | 08 Dec 2025, 1:44:41 PM | |
| Jalview2xmlBase.js | 1 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_1d0.html | 127 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooser.html | 643 kB | 08 Dec 2025, 1:44:39 PM | |
| JalviewFileChooser.js | 137 kB | 08 Dec 2025, 1:44:39 PM | |
| JalviewFileChooserTest.html | 110 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest.js | 6 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_10x.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_14c.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_17s.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_17t.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_18i.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1az.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_2b.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_34.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_39.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_46.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_4k.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_57.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5y.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_7q.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_l3.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_mt.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_nt.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qf.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qx.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_s4.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_st.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_z.html | 11 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileFilter.html | 245 kB | 08 Dec 2025, 1:44:39 PM | |
| JalviewFileFilter.js | 63 kB | 08 Dec 2025, 1:44:39 PM | |
| JalviewFileView.html | 115 kB | 08 Dec 2025, 1:44:39 PM | |
| JalviewFileView.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| JalviewFileViewTest.html | 90 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileViewTest.js | 2 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileViewTest_testGetExtension_12.html | 9 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileViewTest_testGetImageIcon_xg.html | 9 kB | 08 Dec 2025, 1:44:41 PM | |
| JalviewFileViewTest_testGetTypeDescription_op.html | 21 kB | 08 Dec 2025, 1:44:41 PM | |
| JnetAnnotationMaker.html | 126 kB | 08 Dec 2025, 1:44:39 PM | |
| JnetAnnotationMaker.js | 1 kB | 08 Dec 2025, 1:44:39 PM | |
| MSFfile.html | 212 kB | 08 Dec 2025, 1:44:39 PM | |
| MSFfile.js | 5 kB | 08 Dec 2025, 1:44:39 PM | |
| ModellerDescription.html | 236 kB | 08 Dec 2025, 1:44:39 PM | |
| ModellerDescription.js | 3 kB | 08 Dec 2025, 1:44:39 PM | |
| NewickFile.html | 529 kB | 08 Dec 2025, 1:44:39 PM | |
| NewickFile.js | 39 kB | 08 Dec 2025, 1:44:39 PM | |
| NewickFileTests.html | 121 kB | 08 Dec 2025, 1:44:41 PM | |
| NewickFileTests.js | 3 kB | 08 Dec 2025, 1:44:41 PM | |
| NewickFileTests_testTreeIO_110.html | 34 kB | 08 Dec 2025, 1:44:41 PM | |
| NewickFileTests_testTreeIO_6p.html | 32 kB | 08 Dec 2025, 1:44:41 PM | |
| NewickFileTests_testTreeIO_os.html | 35 kB | 08 Dec 2025, 1:44:41 PM | |
| PContactPredictionFile.html | 101 kB | 08 Dec 2025, 1:44:39 PM | |
| PContactPredictionFile.js | 1 kB | 08 Dec 2025, 1:44:39 PM | |
| PDBFeatureSettings.html | 121 kB | 08 Dec 2025, 1:44:39 PM | |
| PDBFeatureSettings.js | 8 kB | 08 Dec 2025, 1:44:39 PM | |
| PIRFile.html | 120 kB | 08 Dec 2025, 1:44:39 PM | |
| PIRFile.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| PfamFile.html | 131 kB | 08 Dec 2025, 1:44:39 PM | |
| PfamFile.js | 8 kB | 08 Dec 2025, 1:44:39 PM | |
| PfamFormatInputTest.html | 56 kB | 08 Dec 2025, 1:44:42 PM | |
| PfamFormatInputTest.js | 1.0 kB | 08 Dec 2025, 1:44:42 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_fs.html | 21 kB | 08 Dec 2025, 1:44:42 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_hi.html | 21 kB | 08 Dec 2025, 1:44:42 PM | |
| PhylipFile.html | 176 kB | 08 Dec 2025, 1:44:39 PM | |
| PhylipFile.js | 6 kB | 08 Dec 2025, 1:44:39 PM | |
| PhylipFileTests.html | 128 kB | 08 Dec 2025, 1:44:40 PM | |
| PhylipFileTests.js | 3 kB | 08 Dec 2025, 1:44:40 PM | |
| PhylipFileTests_testInterleavedDataExtraction_o7.html | 19 kB | 08 Dec 2025, 1:44:40 PM | |
| PhylipFileTests_testInterleavedIO_6q.html | 20 kB | 08 Dec 2025, 1:44:40 PM | |
| PhylipFileTests_testSequentialDataExtraction_93.html | 19 kB | 08 Dec 2025, 1:44:40 PM | |
| PhylipFileTests_testSequentialIO_t6.html | 19 kB | 08 Dec 2025, 1:44:40 PM | |
| PileUpfile.html | 112 kB | 08 Dec 2025, 1:44:39 PM | |
| PileUpfile.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| RNAMLfileTest.html | 66 kB | 08 Dec 2025, 1:44:42 PM | |
| RNAMLfileTest.js | 1 kB | 08 Dec 2025, 1:44:42 PM | |
| RNAMLfileTest_testRnamlSeqImport_ts.html | 30 kB | 08 Dec 2025, 1:44:42 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_qm.html | 48 kB | 08 Dec 2025, 1:44:42 PM | |
| RnamlFile.html | 145 kB | 08 Dec 2025, 1:44:39 PM | |
| RnamlFile.js | 3 kB | 08 Dec 2025, 1:44:39 PM | |
| ScoreMatrixFile.html | 266 kB | 08 Dec 2025, 1:44:39 PM | |
| ScoreMatrixFile.js | 24 kB | 08 Dec 2025, 1:44:39 PM | |
| ScoreMatrixFileTest.html | 334 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest.js | 7 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_x3.html | 14 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_154.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_i5.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_1dc.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_pj.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_1br.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_v9.html | 12 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_r9.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_f1.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_g4.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_3e.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_19.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_a7.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_0.html | 12 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_br.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_13z.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_12j.html | 14 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_t5.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_1c8.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_17l.html | 12 kB | 08 Dec 2025, 1:44:40 PM | |
| SequenceAnnotationReport.html | 631 kB | 08 Dec 2025, 1:44:39 PM | |
| SequenceAnnotationReport.js | 41 kB | 08 Dec 2025, 1:44:39 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_hj.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_vz.html | 23 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_w.html | 14 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_w5.html | 16 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_tg.html | 13 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_jj.html | 10 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_mg.html | 18 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_wq.html | 14 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_1d.html | 13 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_b4.html | 19 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_90.html | 28 kB | 08 Dec 2025, 1:44:41 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_sf.html | 17 kB | 08 Dec 2025, 1:44:41 PM | |
| SimpleBlastFile.html | 152 kB | 08 Dec 2025, 1:44:39 PM | |
| SimpleBlastFile.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| StockholmFile.html | 675 kB | 08 Dec 2025, 1:44:39 PM | |
| StockholmFile.js | 61 kB | 08 Dec 2025, 1:44:39 PM | |
| StockholmFileTest.html | 515 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest.js | 20 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_e8.html | 74 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_dbrefOutput_15j.html | 43 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_descriptionLineOutput_ho.html | 41 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_detectWussBrackets_ny.html | 11 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_uj.html | 49 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_pfamFileDataExtraction_rx.html | 46 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_pfamFileIO_ty.html | 50 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_rfamFileIO_pp.html | 52 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_10o.html | 49 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_al.html | 46 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_ha.html | 27 kB | 08 Dec 2025, 1:44:40 PM | |
| StockholmFileTest_testAnnotationEquivalence_109.html | 13 kB | 08 Dec 2025, 1:44:40 PM | |
| StructureFile.html | 446 kB | 08 Dec 2025, 1:44:39 PM | |
| StructureFile.js | 96 kB | 08 Dec 2025, 1:44:39 PM | |
| TCoffeeScoreFile.html | 362 kB | 08 Dec 2025, 1:44:39 PM | |
| TCoffeeScoreFile.js | 15 kB | 08 Dec 2025, 1:44:39 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest_testGetAsArray_po.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest_testGetAsList_142.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_h3.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_bq.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest_testParse_vn.html | 11 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest_testReadBlock_55.html | 10 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest_testReadHeader_qh.html | 12 kB | 08 Dec 2025, 1:44:42 PM | |
| TCoffeeScoreFileTest_testWrongFile_16n.html | 10 kB | 08 Dec 2025, 1:44:42 PM | |
| VamsasAppDatastore.html | 1.26 MB | 08 Dec 2025, 1:44:39 PM | |
| VamsasAppDatastore.js | 13 kB | 08 Dec 2025, 1:44:39 PM | |
| WSWUBlastClient.html | 177 kB | 08 Dec 2025, 1:44:39 PM | |
| WSWUBlastClient.js | 2 kB | 08 Dec 2025, 1:44:39 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 08 Dec 2025, 1:44:42 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 08 Dec 2025, 1:44:42 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_cp.html | 118 kB | 08 Dec 2025, 1:44:42 PM | |
| pkg-summary.html | 86 kB | 08 Dec 2025, 1:44:42 PM | |
| quick-wins.html | 32 kB | 08 Dec 2025, 1:44:42 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 08 Dec 2025, 1:44:28 PM | |
| test-AnnotationExporterTest.html | 9 kB | 08 Dec 2025, 1:44:28 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 08 Dec 2025, 1:44:28 PM | |
| test-BackupFilesTest.html | 11 kB | 08 Dec 2025, 1:44:28 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 08 Dec 2025, 1:44:28 PM | |
| test-ClustalFileTest.html | 9 kB | 08 Dec 2025, 1:44:28 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 08 Dec 2025, 1:44:28 PM | |
| test-EmblFlatFileTest.html | 11 kB | 08 Dec 2025, 1:44:28 PM | |
| test-FeaturesFileTest.html | 15 kB | 08 Dec 2025, 1:44:28 PM | |
| test-FileFormatsTest.html | 12 kB | 08 Dec 2025, 1:44:28 PM | |
| test-FileIOTester.html | 12 kB | 08 Dec 2025, 1:44:28 PM | |
| test-FileLoaderTest.html | 8 kB | 08 Dec 2025, 1:44:28 PM | |
| test-FormatAdapterTest.html | 13 kB | 08 Dec 2025, 1:44:28 PM | |
| test-GenBankFileTest.html | 9 kB | 08 Dec 2025, 1:44:28 PM | |
| test-HtmlFileTest.html | 8 kB | 08 Dec 2025, 1:44:28 PM | |
| test-IdentifyFileTest.html | 20 kB | 08 Dec 2025, 1:44:28 PM | |
| test-JSONFileTest.html | 13 kB | 08 Dec 2025, 1:44:28 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 08 Dec 2025, 1:44:28 PM | |
| test-JalviewFileChooserTest.html | 20 kB | 08 Dec 2025, 1:44:28 PM | |
| test-JalviewFileViewTest.html | 10 kB | 08 Dec 2025, 1:44:28 PM | |
| test-NewickFileTests.html | 10 kB | 08 Dec 2025, 1:44:28 PM | |
| test-PfamFormatInputTest.html | 9 kB | 08 Dec 2025, 1:44:28 PM | |
| test-PhylipFileTests.html | 10 kB | 08 Dec 2025, 1:44:28 PM | |
| test-RNAMLfileTest.html | 9 kB | 08 Dec 2025, 1:44:28 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 08 Dec 2025, 1:44:28 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 08 Dec 2025, 1:44:28 PM | |
| test-StockholmFileTest.html | 14 kB | 08 Dec 2025, 1:44:28 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 08 Dec 2025, 1:44:28 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 08 Dec 2025, 1:44:28 PM | |
| test-pkg-summary.html | 33 kB | 08 Dec 2025, 1:44:28 PM | |
| testsrc-pkg-summary.html | 46 kB | 08 Dec 2025, 1:44:42 PM | |
| top-risks.html | 33 kB | 08 Dec 2025, 1:44:42 PM |