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Build files
Jalview Builds - Gradle Develop Build - patch-JAL-4601_stk_ss_annots_showhide - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 27 Nov 2025, 5:02:02 PM | |
|
|
exceptions | 27 Nov 2025, 5:01:46 PM | |
|
|
gff | 27 Nov 2025, 5:02:01 PM | |
|
|
packed | 27 Nov 2025, 5:02:21 PM | |
|
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vamsas | 27 Nov 2025, 5:01:40 PM | |
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vcf | 27 Nov 2025, 5:02:00 PM | |
| A3mFile.html | 58 kB | 27 Nov 2025, 5:01:42 PM | |
| A3mFile.js | 0.9 kB | 27 Nov 2025, 5:01:42 PM | |
| AMSAFile.html | 80 kB | 27 Nov 2025, 5:01:41 PM | |
| AMSAFile.js | 1 kB | 27 Nov 2025, 5:01:41 PM | |
| AlignFile.html | 709 kB | 27 Nov 2025, 5:01:42 PM | |
| AlignFile.js | 223 kB | 27 Nov 2025, 5:01:42 PM | |
| AlignmentFileReaderI.html | 36 kB | 27 Nov 2025, 5:01:41 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 27 Nov 2025, 5:01:41 PM | |
| AlignmentFileWriterI.html | 34 kB | 27 Nov 2025, 5:01:42 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 27 Nov 2025, 5:01:42 PM | |
| AlignmentProperties.html | 94 kB | 27 Nov 2025, 5:01:41 PM | |
| AlignmentProperties.js | 1 kB | 27 Nov 2025, 5:01:41 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_jg.html | 33 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_uh.html | 9 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_8r.html | 25 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_188.html | 162 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotationExporterTest.html | 59 kB | 27 Nov 2025, 5:01:43 PM | |
| AnnotationExporterTest.js | 1 kB | 27 Nov 2025, 5:01:43 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_3u.html | 111 kB | 27 Nov 2025, 5:01:43 PM | |
| AnnotationFile.html | 1.01 MB | 27 Nov 2025, 5:01:41 PM | |
| AnnotationFile.js | 59 kB | 27 Nov 2025, 5:01:41 PM | |
| AnnotationFileIOTest.html | 241 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotationFileIOTest.js | 4 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_9s.html | 40 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_13u.html | 111 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotationFileIOTest_testCalcIdRestore_6.html | 111 kB | 27 Nov 2025, 5:01:45 PM | |
| AnnotationFileIOTest_testProviderRestore_6o.html | 111 kB | 27 Nov 2025, 5:01:45 PM | |
| AppletFormatAdapter.html | 680 kB | 27 Nov 2025, 5:01:41 PM | |
| AppletFormatAdapter.js | 129 kB | 27 Nov 2025, 5:01:41 PM | |
| BLCFile.html | 153 kB | 27 Nov 2025, 5:01:42 PM | |
| BLCFile.js | 3 kB | 27 Nov 2025, 5:01:42 PM | |
| BackupFilenameFilter.html | 68 kB | 27 Nov 2025, 5:01:41 PM | |
| BackupFilenameFilter.js | 3 kB | 27 Nov 2025, 5:01:41 PM | |
| BackupFilenameParts.html | 129 kB | 27 Nov 2025, 5:01:41 PM | |
| BackupFilenameParts.js | 7 kB | 27 Nov 2025, 5:01:41 PM | |
| BackupFiles.html | 600 kB | 27 Nov 2025, 5:01:41 PM | |
| BackupFiles.js | 59 kB | 27 Nov 2025, 5:01:41 PM | |
| BackupFilesPresetEntry.html | 155 kB | 27 Nov 2025, 5:01:41 PM | |
| BackupFilesPresetEntry.js | 16 kB | 27 Nov 2025, 5:01:41 PM | |
| BackupFilesTest.html | 296 kB | 27 Nov 2025, 5:01:45 PM | |
| BackupFilesTest.js | 10 kB | 27 Nov 2025, 5:01:45 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_ub.html | 94 kB | 27 Nov 2025, 5:01:45 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_e4.html | 102 kB | 27 Nov 2025, 5:01:45 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_18c.html | 110 kB | 27 Nov 2025, 5:01:45 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_d4.html | 110 kB | 27 Nov 2025, 5:01:45 PM | |
| BackupFilesTest_noBackupsEnabledTest_uv.html | 110 kB | 27 Nov 2025, 5:01:45 PM | |
| BioJsHTMLOutput.html | 280 kB | 27 Nov 2025, 5:01:42 PM | |
| BioJsHTMLOutput.js | 73 kB | 27 Nov 2025, 5:01:42 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 27 Nov 2025, 5:01:42 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 27 Nov 2025, 5:01:42 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_1aw.html | 8 kB | 27 Nov 2025, 5:01:42 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_re.html | 8 kB | 27 Nov 2025, 5:01:42 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_1a7.html | 21 kB | 27 Nov 2025, 5:01:42 PM | |
| ClustalFile.html | 158 kB | 27 Nov 2025, 5:01:42 PM | |
| ClustalFile.js | 6 kB | 27 Nov 2025, 5:01:42 PM | |
| ClustalFileTest.html | 65 kB | 27 Nov 2025, 5:01:45 PM | |
| ClustalFileTest.js | 1 kB | 27 Nov 2025, 5:01:45 PM | |
| ClustalFileTest_testParse_noNumbering_x5.html | 14 kB | 27 Nov 2025, 5:01:45 PM | |
| ClustalFileTest_testParse_withNumbering_vv.html | 14 kB | 27 Nov 2025, 5:01:45 PM | |
| CrossRef2xmlTests.html | 327 kB | 27 Nov 2025, 5:01:42 PM | |
| CrossRef2xmlTests.js | 4 kB | 27 Nov 2025, 5:01:42 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_k4.html | 183 kB | 27 Nov 2025, 5:01:42 PM | |
| DBRefFile.html | 43 kB | 27 Nov 2025, 5:01:42 PM | |
| DBRefFile.js | 0.6 kB | 27 Nov 2025, 5:01:42 PM | |
| DataSourceType.html | 269 kB | 27 Nov 2025, 5:01:41 PM | |
| DataSourceType.js | 25 kB | 27 Nov 2025, 5:01:41 PM | |
| EMBLLikeFlatFile.html | 429 kB | 27 Nov 2025, 5:01:41 PM | |
| EMBLLikeFlatFile.js | 17 kB | 27 Nov 2025, 5:01:41 PM | |
| EmblFlatFile.html | 134 kB | 27 Nov 2025, 5:01:41 PM | |
| EmblFlatFile.js | 4 kB | 27 Nov 2025, 5:01:41 PM | |
| EmblFlatFileTest.html | 229 kB | 27 Nov 2025, 5:01:44 PM | |
| EmblFlatFileTest.js | 5 kB | 27 Nov 2025, 5:01:44 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_1de.html | 12 kB | 27 Nov 2025, 5:01:44 PM | |
| EmblFlatFileTest_testParseToRNA_187.html | 23 kB | 27 Nov 2025, 5:01:44 PM | |
| EmblFlatFileTest_testParse_1bi.html | 23 kB | 27 Nov 2025, 5:01:44 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_q6.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_13n.html | 22 kB | 27 Nov 2025, 5:01:44 PM | |
| EmblFlatFileTest_testRemoveQuotes_12u.html | 12 kB | 27 Nov 2025, 5:01:44 PM | |
| FastaFile.html | 428 kB | 27 Nov 2025, 5:01:42 PM | |
| FastaFile.js | 112 kB | 27 Nov 2025, 5:01:42 PM | |
| FeaturesFile.html | 765 kB | 27 Nov 2025, 5:01:41 PM | |
| FeaturesFile.js | 27 kB | 27 Nov 2025, 5:01:41 PM | |
| FeaturesFileTest.html | 522 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest.js | 13 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_readGff3File_13a.html | 37 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_simpleGff3FileClass_15c.html | 34 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_simpleGff3FileLoader_a.html | 129 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_ar.html | 45 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testOutputFeatureFilters_bx.html | 14 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testParseFilters_2o.html | 16 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testParse_6u.html | 115 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_v2.html | 96 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_rr.html | 118 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testParse_pureGff3_af.html | 109 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testPrintGffFormat_159.html | 115 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_ai.html | 116 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testPrintJalviewFormat_b9.html | 112 kB | 27 Nov 2025, 5:01:44 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_uf.html | 116 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormat.html | 829 kB | 27 Nov 2025, 5:01:41 PM | |
| FileFormat.js | 83 kB | 27 Nov 2025, 5:01:41 PM | |
| FileFormatException.html | 58 kB | 27 Nov 2025, 5:01:42 PM | |
| FileFormatException.js | 2 kB | 27 Nov 2025, 5:01:42 PM | |
| FileFormatI.html | 47 kB | 27 Nov 2025, 5:01:41 PM | |
| FileFormatI.js | 0.7 kB | 27 Nov 2025, 5:01:41 PM | |
| FileFormats.html | 480 kB | 27 Nov 2025, 5:01:41 PM | |
| FileFormats.js | 74 kB | 27 Nov 2025, 5:01:41 PM | |
| FileFormatsTest.html | 137 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormatsTest.js | 3 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormatsTest_testDeregisterFileFormat_my.html | 9 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormatsTest_testForName_h0.html | 9 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormatsTest_testGetFormats_ay.html | 9 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormatsTest_testGetReadableFormats_17a.html | 9 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormatsTest_testGetWritableFormats_ql.html | 9 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormatsTest_testIsIdentifiable_89.html | 9 kB | 27 Nov 2025, 5:01:44 PM | |
| FileFormatsTest_testRegisterFileFormat_xf.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| FileIOTester.html | 130 kB | 27 Nov 2025, 5:01:44 PM | |
| FileIOTester.js | 3 kB | 27 Nov 2025, 5:01:44 PM | |
| FileIOTester_testGzipIo_oo.html | 12 kB | 27 Nov 2025, 5:01:44 PM | |
| FileIOTester_testGziplocalFileIO_c4.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| FileIOTester_testIsGzipInputStream_yj.html | 12 kB | 27 Nov 2025, 5:01:44 PM | |
| FileIOTester_testNonGzipURLIO_ku.html | 12 kB | 27 Nov 2025, 5:01:44 PM | |
| FileIOTester_testNonGziplocalFileIO_qo.html | 11 kB | 27 Nov 2025, 5:01:45 PM | |
| FileIOTester_testStarsInFasta1_dy.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| FileIOTester_testStarsInFasta2_rf.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| FileLoader.html | 601 kB | 27 Nov 2025, 5:01:41 PM | |
| FileLoader.js | 250 kB | 27 Nov 2025, 5:01:42 PM | |
| FileLoaderTest.html | 37 kB | 27 Nov 2025, 5:01:45 PM | |
| FileLoaderTest.js | 0.6 kB | 27 Nov 2025, 5:01:45 PM | |
| FileParse.html | 923 kB | 27 Nov 2025, 5:01:41 PM | |
| FileParse.js | 335 kB | 27 Nov 2025, 5:01:41 PM | |
| FormatAdapter.html | 458 kB | 27 Nov 2025, 5:01:41 PM | |
| FormatAdapter.js | 56 kB | 27 Nov 2025, 5:01:41 PM | |
| FormatAdapterTest.html | 112 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest.js | 5 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_12y.html | 43 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_173.html | 22 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_19m.html | 21 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_8t.html | 21 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_9k.html | 22 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_bn.html | 21 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_f2.html | 23 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_he.html | 21 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_i.html | 22 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_q9.html | 33 kB | 27 Nov 2025, 5:01:43 PM | |
| FormatAdapterTest_testRoundTrip_za.html | 23 kB | 27 Nov 2025, 5:01:43 PM | |
| GenBankFile.html | 121 kB | 27 Nov 2025, 5:01:41 PM | |
| GenBankFile.js | 2 kB | 27 Nov 2025, 5:01:41 PM | |
| GenBankFileTest.html | 133 kB | 27 Nov 2025, 5:01:43 PM | |
| GenBankFileTest.js | 3 kB | 27 Nov 2025, 5:01:43 PM | |
| GenBankFileTest_testParse_19s.html | 19 kB | 27 Nov 2025, 5:01:43 PM | |
| HTMLOutput.html | 197 kB | 27 Nov 2025, 5:01:42 PM | |
| HTMLOutput.js | 3 kB | 27 Nov 2025, 5:01:42 PM | |
| HtmlFile.html | 132 kB | 27 Nov 2025, 5:01:41 PM | |
| HtmlFile.js | 2 kB | 27 Nov 2025, 5:01:41 PM | |
| HtmlFileTest.html | 39 kB | 27 Nov 2025, 5:01:44 PM | |
| HtmlFileTest.js | 0.6 kB | 27 Nov 2025, 5:01:44 PM | |
| HtmlSvgOutput.html | 173 kB | 27 Nov 2025, 5:01:41 PM | |
| HtmlSvgOutput.js | 2 kB | 27 Nov 2025, 5:01:41 PM | |
| IdentifyFile.html | 586 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFile.js | 234 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest.html | 145 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest.js | 4 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_15o.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_18b.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_26.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_4n.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_5n.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_6z.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_9d.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_ab.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_eo.html | 12 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_featureFile_wz.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_fk.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_gr.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_l0.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_l2.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_nd.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_rl.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_t8.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_yn.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testIdentify_z1.html | 11 kB | 27 Nov 2025, 5:01:42 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_tn.html | 8 kB | 27 Nov 2025, 5:01:42 PM | |
| InputStreamParser.html | 44 kB | 27 Nov 2025, 5:01:42 PM | |
| InputStreamParser.js | 0.6 kB | 27 Nov 2025, 5:01:42 PM | |
| IntKeyStringValueEntry.html | 44 kB | 27 Nov 2025, 5:01:42 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 27 Nov 2025, 5:01:42 PM | |
| JPredFile.html | 220 kB | 27 Nov 2025, 5:01:42 PM | |
| JPredFile.js | 2 kB | 27 Nov 2025, 5:01:42 PM | |
| JSONFile.html | 508 kB | 27 Nov 2025, 5:01:41 PM | |
| JSONFile.js | 14 kB | 27 Nov 2025, 5:01:41 PM | |
| JSONFileTest.html | 364 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest.js | 6 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_colorSchemeTest_104.html | 8 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_hiddenColsTest_py.html | 10 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_hiddenSeqsTest_sn.html | 8 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_isShowSeqFeaturesSet_qd.html | 8 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_roundTripTest_1dl.html | 7 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_testAnnotationParsed_3r.html | 8 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_16z.html | 105 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_testGrpParsed_14m.html | 10 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_testGrpParsed_colourNone_17w.html | 124 kB | 27 Nov 2025, 5:01:43 PM | |
| JSONFileTest_testSeqParsed_dm.html | 11 kB | 27 Nov 2025, 5:01:43 PM | |
| Jalview2xmlBase.html | 78 kB | 27 Nov 2025, 5:01:43 PM | |
| Jalview2xmlBase.js | 1 kB | 27 Nov 2025, 5:01:43 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 27 Nov 2025, 5:01:43 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 27 Nov 2025, 5:01:43 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_s7.html | 128 kB | 27 Nov 2025, 5:01:43 PM | |
| JalviewFileChooser.html | 646 kB | 27 Nov 2025, 5:01:41 PM | |
| JalviewFileChooser.js | 140 kB | 27 Nov 2025, 5:01:41 PM | |
| JalviewFileChooserTest.html | 110 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest.js | 6 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_10t.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12i.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12p.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_15m.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_16r.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_2n.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_4w.html | 12 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5e.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_7k.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_7z.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ce.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_h7.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i7.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_iy.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_k2.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_l4.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_n4.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_rs.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ts.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_uc.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ws.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_zq.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| JalviewFileFilter.html | 248 kB | 27 Nov 2025, 5:01:42 PM | |
| JalviewFileFilter.js | 65 kB | 27 Nov 2025, 5:01:42 PM | |
| JalviewFileView.html | 115 kB | 27 Nov 2025, 5:01:41 PM | |
| JalviewFileView.js | 2 kB | 27 Nov 2025, 5:01:41 PM | |
| JalviewFileViewTest.html | 90 kB | 27 Nov 2025, 5:01:43 PM | |
| JalviewFileViewTest.js | 2 kB | 27 Nov 2025, 5:01:43 PM | |
| JalviewFileViewTest_testGetExtension_og.html | 8 kB | 27 Nov 2025, 5:01:43 PM | |
| JalviewFileViewTest_testGetImageIcon_mz.html | 9 kB | 27 Nov 2025, 5:01:43 PM | |
| JalviewFileViewTest_testGetTypeDescription_1ag.html | 10 kB | 27 Nov 2025, 5:01:43 PM | |
| JnetAnnotationMaker.html | 126 kB | 27 Nov 2025, 5:01:41 PM | |
| JnetAnnotationMaker.js | 1 kB | 27 Nov 2025, 5:01:41 PM | |
| MSFfile.html | 212 kB | 27 Nov 2025, 5:01:42 PM | |
| MSFfile.js | 5 kB | 27 Nov 2025, 5:01:42 PM | |
| ModellerDescription.html | 236 kB | 27 Nov 2025, 5:01:41 PM | |
| ModellerDescription.js | 3 kB | 27 Nov 2025, 5:01:41 PM | |
| NewickFile.html | 529 kB | 27 Nov 2025, 5:01:42 PM | |
| NewickFile.js | 39 kB | 27 Nov 2025, 5:01:42 PM | |
| NewickFileTests.html | 121 kB | 27 Nov 2025, 5:01:43 PM | |
| NewickFileTests.js | 3 kB | 27 Nov 2025, 5:01:43 PM | |
| NewickFileTests_testTreeIO_14w.html | 34 kB | 27 Nov 2025, 5:01:43 PM | |
| NewickFileTests_testTreeIO_2a.html | 35 kB | 27 Nov 2025, 5:01:43 PM | |
| NewickFileTests_testTreeIO_vu.html | 32 kB | 27 Nov 2025, 5:01:43 PM | |
| PContactPredictionFile.html | 101 kB | 27 Nov 2025, 5:01:41 PM | |
| PContactPredictionFile.js | 1 kB | 27 Nov 2025, 5:01:41 PM | |
| PDBFeatureSettings.html | 121 kB | 27 Nov 2025, 5:01:41 PM | |
| PDBFeatureSettings.js | 8 kB | 27 Nov 2025, 5:01:41 PM | |
| PIRFile.html | 120 kB | 27 Nov 2025, 5:01:41 PM | |
| PIRFile.js | 2 kB | 27 Nov 2025, 5:01:41 PM | |
| PfamFile.html | 131 kB | 27 Nov 2025, 5:01:41 PM | |
| PfamFile.js | 8 kB | 27 Nov 2025, 5:01:41 PM | |
| PfamFormatInputTest.html | 56 kB | 27 Nov 2025, 5:01:45 PM | |
| PfamFormatInputTest.js | 1.0 kB | 27 Nov 2025, 5:01:45 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_tp.html | 21 kB | 27 Nov 2025, 5:01:45 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_3l.html | 21 kB | 27 Nov 2025, 5:01:45 PM | |
| PhylipFile.html | 176 kB | 27 Nov 2025, 5:01:41 PM | |
| PhylipFile.js | 6 kB | 27 Nov 2025, 5:01:41 PM | |
| PhylipFileTests.html | 128 kB | 27 Nov 2025, 5:01:42 PM | |
| PhylipFileTests.js | 3 kB | 27 Nov 2025, 5:01:42 PM | |
| PhylipFileTests_testInterleavedDataExtraction_65.html | 34 kB | 27 Nov 2025, 5:01:43 PM | |
| PhylipFileTests_testInterleavedIO_16c.html | 47 kB | 27 Nov 2025, 5:01:43 PM | |
| PhylipFileTests_testSequentialDataExtraction_hr.html | 20 kB | 27 Nov 2025, 5:01:42 PM | |
| PhylipFileTests_testSequentialIO_172.html | 34 kB | 27 Nov 2025, 5:01:43 PM | |
| PileUpfile.html | 112 kB | 27 Nov 2025, 5:01:41 PM | |
| PileUpfile.js | 2 kB | 27 Nov 2025, 5:01:41 PM | |
| RNAMLfileTest.html | 66 kB | 27 Nov 2025, 5:01:45 PM | |
| RNAMLfileTest.js | 1 kB | 27 Nov 2025, 5:01:45 PM | |
| RNAMLfileTest_testRnamlSeqImport_9w.html | 30 kB | 27 Nov 2025, 5:01:45 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_zu.html | 48 kB | 27 Nov 2025, 5:01:45 PM | |
| RnamlFile.html | 145 kB | 27 Nov 2025, 5:01:41 PM | |
| RnamlFile.js | 3 kB | 27 Nov 2025, 5:01:41 PM | |
| ScoreMatrixFile.html | 266 kB | 27 Nov 2025, 5:01:42 PM | |
| ScoreMatrixFile.js | 24 kB | 27 Nov 2025, 5:01:42 PM | |
| ScoreMatrixFileTest.html | 334 kB | 27 Nov 2025, 5:01:43 PM | |
| ScoreMatrixFileTest.js | 7 kB | 27 Nov 2025, 5:01:43 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_q1.html | 23 kB | 27 Nov 2025, 5:01:43 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_165.html | 11 kB | 27 Nov 2025, 5:01:43 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_o.html | 11 kB | 27 Nov 2025, 5:01:43 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_ud.html | 11 kB | 27 Nov 2025, 5:01:43 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_4j.html | 11 kB | 27 Nov 2025, 5:01:43 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_pt.html | 11 kB | 27 Nov 2025, 5:01:43 PM | |
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| ScoreMatrixFileTest_testParseMatrix_headerMissing_vc.html | 11 kB | 27 Nov 2025, 5:01:43 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_c3.html | 11 kB | 27 Nov 2025, 5:01:43 PM | |
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| ScoreMatrixFileTest_testParse_ncbiFormat_7i.html | 25 kB | 27 Nov 2025, 5:01:43 PM | |
| SequenceAnnotationReport.html | 631 kB | 27 Nov 2025, 5:01:41 PM | |
| SequenceAnnotationReport.js | 41 kB | 27 Nov 2025, 5:01:41 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 27 Nov 2025, 5:01:43 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 27 Nov 2025, 5:01:43 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_196.html | 10 kB | 27 Nov 2025, 5:01:43 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_1dh.html | 14 kB | 27 Nov 2025, 5:01:43 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_19f.html | 9 kB | 27 Nov 2025, 5:01:44 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_be.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_gi.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_rw.html | 10 kB | 27 Nov 2025, 5:01:44 PM | |
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| SequenceAnnotationReportTest_testAppendFeature_withScore_ka.html | 12 kB | 27 Nov 2025, 5:01:43 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_13f.html | 11 kB | 27 Nov 2025, 5:01:44 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_ut.html | 15 kB | 27 Nov 2025, 5:01:44 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_xe.html | 18 kB | 27 Nov 2025, 5:01:44 PM | |
| SimpleBlastFile.html | 152 kB | 27 Nov 2025, 5:01:41 PM | |
| SimpleBlastFile.js | 2 kB | 27 Nov 2025, 5:01:41 PM | |
| StockholmFile.html | 675 kB | 27 Nov 2025, 5:01:41 PM | |
| StockholmFile.js | 60 kB | 27 Nov 2025, 5:01:41 PM | |
| StockholmFileTest.html | 515 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest.js | 20 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_p3.html | 70 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_dbrefOutput_3a.html | 51 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_descriptionLineOutput_194.html | 49 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_detectWussBrackets_127.html | 17 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_gw.html | 66 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_pfamFileDataExtraction_ct.html | 60 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_pfamFileIO_7d.html | 48 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_rfamFileIO_aq.html | 50 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_a9.html | 50 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_bb.html | 46 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_10l.html | 27 kB | 27 Nov 2025, 5:01:42 PM | |
| StockholmFileTest_testAnnotationEquivalence_182.html | 13 kB | 27 Nov 2025, 5:01:42 PM | |
| StructureFile.html | 445 kB | 27 Nov 2025, 5:01:41 PM | |
| StructureFile.js | 97 kB | 27 Nov 2025, 5:01:41 PM | |
| TCoffeeScoreFile.html | 362 kB | 27 Nov 2025, 5:01:41 PM | |
| TCoffeeScoreFile.js | 15 kB | 27 Nov 2025, 5:01:41 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 27 Nov 2025, 5:01:45 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 27 Nov 2025, 5:01:45 PM | |
| TCoffeeScoreFileTest_testGetAsArray_dj.html | 11 kB | 27 Nov 2025, 5:01:45 PM | |
| TCoffeeScoreFileTest_testGetAsList_zt.html | 11 kB | 27 Nov 2025, 5:01:45 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_19w.html | 11 kB | 27 Nov 2025, 5:01:45 PM | |
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| TCoffeeScoreFileTest_testParse_11e.html | 11 kB | 27 Nov 2025, 5:01:45 PM | |
| TCoffeeScoreFileTest_testReadBlock_j6.html | 10 kB | 27 Nov 2025, 5:01:45 PM | |
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| TCoffeeScoreFileTest_testWrongFile_133.html | 10 kB | 27 Nov 2025, 5:01:45 PM | |
| VamsasAppDatastore.html | 1.26 MB | 27 Nov 2025, 5:01:41 PM | |
| VamsasAppDatastore.js | 13 kB | 27 Nov 2025, 5:01:41 PM | |
| WSWUBlastClient.html | 177 kB | 27 Nov 2025, 5:01:41 PM | |
| WSWUBlastClient.js | 2 kB | 27 Nov 2025, 5:01:41 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 27 Nov 2025, 5:01:45 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 27 Nov 2025, 5:01:45 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_6k.html | 107 kB | 27 Nov 2025, 5:01:45 PM | |
| pkg-summary.html | 86 kB | 27 Nov 2025, 5:01:45 PM | |
| quick-wins.html | 32 kB | 27 Nov 2025, 5:01:45 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 27 Nov 2025, 5:01:28 PM | |
| test-AnnotationExporterTest.html | 9 kB | 27 Nov 2025, 5:01:28 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 27 Nov 2025, 5:01:28 PM | |
| test-BackupFilesTest.html | 11 kB | 27 Nov 2025, 5:01:28 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 27 Nov 2025, 5:01:28 PM | |
| test-ClustalFileTest.html | 9 kB | 27 Nov 2025, 5:01:28 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 27 Nov 2025, 5:01:28 PM | |
| test-EmblFlatFileTest.html | 11 kB | 27 Nov 2025, 5:01:28 PM | |
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| test-FileIOTester.html | 12 kB | 27 Nov 2025, 5:01:28 PM | |
| test-FileLoaderTest.html | 8 kB | 27 Nov 2025, 5:01:28 PM | |
| test-FormatAdapterTest.html | 13 kB | 27 Nov 2025, 5:01:28 PM | |
| test-GenBankFileTest.html | 9 kB | 27 Nov 2025, 5:01:28 PM | |
| test-HtmlFileTest.html | 8 kB | 27 Nov 2025, 5:01:28 PM | |
| test-IdentifyFileTest.html | 18 kB | 27 Nov 2025, 5:01:28 PM | |
| test-JSONFileTest.html | 13 kB | 27 Nov 2025, 5:01:28 PM | |
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| test-JalviewFileChooserTest.html | 20 kB | 27 Nov 2025, 5:01:28 PM | |
| test-JalviewFileViewTest.html | 10 kB | 27 Nov 2025, 5:01:28 PM | |
| test-NewickFileTests.html | 10 kB | 27 Nov 2025, 5:01:28 PM | |
| test-PfamFormatInputTest.html | 9 kB | 27 Nov 2025, 5:01:28 PM | |
| test-PhylipFileTests.html | 10 kB | 27 Nov 2025, 5:01:28 PM | |
| test-RNAMLfileTest.html | 9 kB | 27 Nov 2025, 5:01:28 PM | |
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| test-SequenceAnnotationReportTest.html | 15 kB | 27 Nov 2025, 5:01:28 PM | |
| test-StockholmFileTest.html | 14 kB | 27 Nov 2025, 5:01:28 PM | |
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| test-WindowsFileLoadAndSaveTest.html | 9 kB | 27 Nov 2025, 5:01:28 PM | |
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| testsrc-pkg-summary.html | 46 kB | 27 Nov 2025, 5:01:45 PM | |
| top-risks.html | 33 kB | 27 Nov 2025, 5:01:45 PM |