None
Build files
Jalview Builds - Gradle Develop Build - bug-JAL-4601_manual_import_of_jpred_annotation_data_doesnt_display_ss_consensus - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 27 Nov 2025, 5:18:24 PM | |
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exceptions | 27 Nov 2025, 5:18:08 PM | |
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|
gff | 27 Nov 2025, 5:18:24 PM | |
|
|
packed | 27 Nov 2025, 5:18:44 PM | |
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vamsas | 27 Nov 2025, 5:18:01 PM | |
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vcf | 27 Nov 2025, 5:18:23 PM | |
| A3mFile.html | 58 kB | 27 Nov 2025, 5:18:03 PM | |
| A3mFile.js | 0.9 kB | 27 Nov 2025, 5:18:03 PM | |
| AMSAFile.html | 80 kB | 27 Nov 2025, 5:18:03 PM | |
| AMSAFile.js | 1 kB | 27 Nov 2025, 5:18:03 PM | |
| AlignFile.html | 707 kB | 27 Nov 2025, 5:18:03 PM | |
| AlignFile.js | 222 kB | 27 Nov 2025, 5:18:03 PM | |
| AlignmentFileReaderI.html | 36 kB | 27 Nov 2025, 5:18:03 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 27 Nov 2025, 5:18:03 PM | |
| AlignmentFileWriterI.html | 34 kB | 27 Nov 2025, 5:18:03 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 27 Nov 2025, 5:18:03 PM | |
| AlignmentProperties.html | 94 kB | 27 Nov 2025, 5:18:03 PM | |
| AlignmentProperties.js | 1 kB | 27 Nov 2025, 5:18:03 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_yg.html | 10 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_t2.html | 15 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_13m.html | 14 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_7j.html | 163 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotationExporterTest.html | 59 kB | 27 Nov 2025, 5:18:05 PM | |
| AnnotationExporterTest.js | 1 kB | 27 Nov 2025, 5:18:05 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_14q.html | 111 kB | 27 Nov 2025, 5:18:05 PM | |
| AnnotationFile.html | 1.01 MB | 27 Nov 2025, 5:18:03 PM | |
| AnnotationFile.js | 60 kB | 27 Nov 2025, 5:18:03 PM | |
| AnnotationFileIOTest.html | 241 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotationFileIOTest.js | 5 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_m4.html | 41 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_qb.html | 111 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotationFileIOTest_testCalcIdRestore_1b4.html | 103 kB | 27 Nov 2025, 5:18:07 PM | |
| AnnotationFileIOTest_testProviderRestore_54.html | 108 kB | 27 Nov 2025, 5:18:07 PM | |
| AppletFormatAdapter.html | 680 kB | 27 Nov 2025, 5:18:03 PM | |
| AppletFormatAdapter.js | 129 kB | 27 Nov 2025, 5:18:03 PM | |
| BLCFile.html | 153 kB | 27 Nov 2025, 5:18:04 PM | |
| BLCFile.js | 3 kB | 27 Nov 2025, 5:18:04 PM | |
| BackupFilenameFilter.html | 68 kB | 27 Nov 2025, 5:18:03 PM | |
| BackupFilenameFilter.js | 3 kB | 27 Nov 2025, 5:18:03 PM | |
| BackupFilenameParts.html | 129 kB | 27 Nov 2025, 5:18:03 PM | |
| BackupFilenameParts.js | 7 kB | 27 Nov 2025, 5:18:03 PM | |
| BackupFiles.html | 599 kB | 27 Nov 2025, 5:18:03 PM | |
| BackupFiles.js | 58 kB | 27 Nov 2025, 5:18:03 PM | |
| BackupFilesPresetEntry.html | 155 kB | 27 Nov 2025, 5:18:03 PM | |
| BackupFilesPresetEntry.js | 15 kB | 27 Nov 2025, 5:18:03 PM | |
| BackupFilesTest.html | 296 kB | 27 Nov 2025, 5:18:07 PM | |
| BackupFilesTest.js | 10 kB | 27 Nov 2025, 5:18:07 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_xm.html | 111 kB | 27 Nov 2025, 5:18:07 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_18f.html | 110 kB | 27 Nov 2025, 5:18:07 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_w6.html | 110 kB | 27 Nov 2025, 5:18:07 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_r1.html | 93 kB | 27 Nov 2025, 5:18:07 PM | |
| BackupFilesTest_noBackupsEnabledTest_p4.html | 110 kB | 27 Nov 2025, 5:18:07 PM | |
| BioJsHTMLOutput.html | 278 kB | 27 Nov 2025, 5:18:03 PM | |
| BioJsHTMLOutput.js | 73 kB | 27 Nov 2025, 5:18:03 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 27 Nov 2025, 5:18:04 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 27 Nov 2025, 5:18:04 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_122.html | 8 kB | 27 Nov 2025, 5:18:04 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_mf.html | 8 kB | 27 Nov 2025, 5:18:04 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_45.html | 23 kB | 27 Nov 2025, 5:18:04 PM | |
| ClustalFile.html | 158 kB | 27 Nov 2025, 5:18:03 PM | |
| ClustalFile.js | 6 kB | 27 Nov 2025, 5:18:03 PM | |
| ClustalFileTest.html | 65 kB | 27 Nov 2025, 5:18:07 PM | |
| ClustalFileTest.js | 1 kB | 27 Nov 2025, 5:18:07 PM | |
| ClustalFileTest_testParse_noNumbering_82.html | 14 kB | 27 Nov 2025, 5:18:07 PM | |
| ClustalFileTest_testParse_withNumbering_z1.html | 14 kB | 27 Nov 2025, 5:18:07 PM | |
| CrossRef2xmlTests.html | 327 kB | 27 Nov 2025, 5:18:04 PM | |
| CrossRef2xmlTests.js | 4 kB | 27 Nov 2025, 5:18:04 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_un.html | 185 kB | 27 Nov 2025, 5:18:04 PM | |
| DBRefFile.html | 43 kB | 27 Nov 2025, 5:18:03 PM | |
| DBRefFile.js | 0.6 kB | 27 Nov 2025, 5:18:03 PM | |
| DataSourceType.html | 269 kB | 27 Nov 2025, 5:18:03 PM | |
| DataSourceType.js | 25 kB | 27 Nov 2025, 5:18:03 PM | |
| EMBLLikeFlatFile.html | 429 kB | 27 Nov 2025, 5:18:03 PM | |
| EMBLLikeFlatFile.js | 17 kB | 27 Nov 2025, 5:18:03 PM | |
| EmblFlatFile.html | 134 kB | 27 Nov 2025, 5:18:03 PM | |
| EmblFlatFile.js | 4 kB | 27 Nov 2025, 5:18:03 PM | |
| EmblFlatFileTest.html | 229 kB | 27 Nov 2025, 5:18:06 PM | |
| EmblFlatFileTest.js | 5 kB | 27 Nov 2025, 5:18:06 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_y7.html | 12 kB | 27 Nov 2025, 5:18:06 PM | |
| EmblFlatFileTest_testParseToRNA_mh.html | 22 kB | 27 Nov 2025, 5:18:06 PM | |
| EmblFlatFileTest_testParse_1at.html | 23 kB | 27 Nov 2025, 5:18:06 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_bo.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_pj.html | 22 kB | 27 Nov 2025, 5:18:06 PM | |
| EmblFlatFileTest_testRemoveQuotes_da.html | 12 kB | 27 Nov 2025, 5:18:06 PM | |
| FastaFile.html | 428 kB | 27 Nov 2025, 5:18:04 PM | |
| FastaFile.js | 111 kB | 27 Nov 2025, 5:18:04 PM | |
| FeaturesFile.html | 765 kB | 27 Nov 2025, 5:18:03 PM | |
| FeaturesFile.js | 27 kB | 27 Nov 2025, 5:18:03 PM | |
| FeaturesFileTest.html | 522 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest.js | 13 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_readGff3File_9g.html | 38 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_simpleGff3FileClass_an.html | 36 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_simpleGff3FileLoader_rq.html | 128 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_8t.html | 36 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testOutputFeatureFilters_df.html | 17 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testParseFilters_15o.html | 18 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testParse_1av.html | 109 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_py.html | 113 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_m0.html | 120 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testParse_pureGff3_58.html | 119 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testPrintGffFormat_r6.html | 116 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_t1.html | 118 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testPrintJalviewFormat_1ae.html | 93 kB | 27 Nov 2025, 5:18:06 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_14f.html | 110 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormat.html | 826 kB | 27 Nov 2025, 5:18:03 PM | |
| FileFormat.js | 82 kB | 27 Nov 2025, 5:18:03 PM | |
| FileFormatException.html | 58 kB | 27 Nov 2025, 5:18:03 PM | |
| FileFormatException.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| FileFormatI.html | 47 kB | 27 Nov 2025, 5:18:03 PM | |
| FileFormatI.js | 0.7 kB | 27 Nov 2025, 5:18:03 PM | |
| FileFormats.html | 467 kB | 27 Nov 2025, 5:18:03 PM | |
| FileFormats.js | 72 kB | 27 Nov 2025, 5:18:03 PM | |
| FileFormatsTest.html | 137 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormatsTest.js | 3 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormatsTest_testDeregisterFileFormat_k0.html | 9 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormatsTest_testForName_14i.html | 9 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormatsTest_testGetFormats_xj.html | 9 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormatsTest_testGetReadableFormats_11z.html | 9 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormatsTest_testGetWritableFormats_8j.html | 9 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormatsTest_testIsIdentifiable_1df.html | 9 kB | 27 Nov 2025, 5:18:06 PM | |
| FileFormatsTest_testRegisterFileFormat_c9.html | 9 kB | 27 Nov 2025, 5:18:06 PM | |
| FileIOTester.html | 130 kB | 27 Nov 2025, 5:18:06 PM | |
| FileIOTester.js | 3 kB | 27 Nov 2025, 5:18:06 PM | |
| FileIOTester_testGzipIo_bl.html | 12 kB | 27 Nov 2025, 5:18:06 PM | |
| FileIOTester_testGziplocalFileIO_qv.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| FileIOTester_testIsGzipInputStream_90.html | 12 kB | 27 Nov 2025, 5:18:06 PM | |
| FileIOTester_testNonGzipURLIO_wj.html | 12 kB | 27 Nov 2025, 5:18:07 PM | |
| FileIOTester_testNonGziplocalFileIO_j1.html | 11 kB | 27 Nov 2025, 5:18:07 PM | |
| FileIOTester_testStarsInFasta1_140.html | 11 kB | 27 Nov 2025, 5:18:07 PM | |
| FileIOTester_testStarsInFasta2_mb.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| FileLoader.html | 601 kB | 27 Nov 2025, 5:18:03 PM | |
| FileLoader.js | 250 kB | 27 Nov 2025, 5:18:03 PM | |
| FileLoaderTest.html | 37 kB | 27 Nov 2025, 5:18:07 PM | |
| FileLoaderTest.js | 0.6 kB | 27 Nov 2025, 5:18:07 PM | |
| FileParse.html | 927 kB | 27 Nov 2025, 5:18:03 PM | |
| FileParse.js | 339 kB | 27 Nov 2025, 5:18:03 PM | |
| FormatAdapter.html | 458 kB | 27 Nov 2025, 5:18:02 PM | |
| FormatAdapter.js | 55 kB | 27 Nov 2025, 5:18:02 PM | |
| FormatAdapterTest.html | 112 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest.js | 5 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_116.html | 33 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_1o.html | 21 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_1v.html | 28 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_27.html | 22 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_85.html | 26 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_du.html | 22 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_hn.html | 50 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_kg.html | 21 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_kh.html | 21 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_s1.html | 22 kB | 27 Nov 2025, 5:18:05 PM | |
| FormatAdapterTest_testRoundTrip_vu.html | 23 kB | 27 Nov 2025, 5:18:05 PM | |
| GenBankFile.html | 121 kB | 27 Nov 2025, 5:18:03 PM | |
| GenBankFile.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| GenBankFileTest.html | 133 kB | 27 Nov 2025, 5:18:05 PM | |
| GenBankFileTest.js | 3 kB | 27 Nov 2025, 5:18:05 PM | |
| GenBankFileTest_testParse_xb.html | 19 kB | 27 Nov 2025, 5:18:05 PM | |
| HTMLOutput.html | 197 kB | 27 Nov 2025, 5:18:03 PM | |
| HTMLOutput.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| HtmlFile.html | 132 kB | 27 Nov 2025, 5:18:03 PM | |
| HtmlFile.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| HtmlFileTest.html | 39 kB | 27 Nov 2025, 5:18:06 PM | |
| HtmlFileTest.js | 0.6 kB | 27 Nov 2025, 5:18:06 PM | |
| HtmlSvgOutput.html | 173 kB | 27 Nov 2025, 5:18:03 PM | |
| HtmlSvgOutput.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| IdentifyFile.html | 591 kB | 27 Nov 2025, 5:18:03 PM | |
| IdentifyFile.js | 238 kB | 27 Nov 2025, 5:18:03 PM | |
| IdentifyFileTest.html | 150 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest.js | 5 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_162.html | 12 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_16k.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_18y.html | 12 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_1g.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_eq.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_featureFile_1a0.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_fz.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_gi.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_k1.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_lu.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_mv.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_po.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_qk.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_qo.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_qx.html | 13 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_te.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_u1.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_vp.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_wi.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_wq.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_x0.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_y2.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testIdentify_yk.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_iq.html | 8 kB | 27 Nov 2025, 5:18:04 PM | |
| InputStreamParser.html | 44 kB | 27 Nov 2025, 5:18:03 PM | |
| InputStreamParser.js | 0.6 kB | 27 Nov 2025, 5:18:03 PM | |
| IntKeyStringValueEntry.html | 44 kB | 27 Nov 2025, 5:18:03 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 27 Nov 2025, 5:18:03 PM | |
| JPredFile.html | 220 kB | 27 Nov 2025, 5:18:03 PM | |
| JPredFile.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| JSONFile.html | 508 kB | 27 Nov 2025, 5:18:03 PM | |
| JSONFile.js | 14 kB | 27 Nov 2025, 5:18:03 PM | |
| JSONFileTest.html | 364 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest.js | 6 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_colorSchemeTest_xq.html | 8 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_hiddenColsTest_nv.html | 10 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_hiddenSeqsTest_bj.html | 8 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_isShowSeqFeaturesSet_q9.html | 8 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_roundTripTest_ke.html | 7 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_testAnnotationParsed_f.html | 8 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_aq.html | 105 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_testGrpParsed_7x.html | 10 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_testGrpParsed_colourNone_12c.html | 118 kB | 27 Nov 2025, 5:18:05 PM | |
| JSONFileTest_testSeqParsed_11t.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| Jalview2xmlBase.html | 78 kB | 27 Nov 2025, 5:18:05 PM | |
| Jalview2xmlBase.js | 1 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_vc.html | 137 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewFileChooser.html | 649 kB | 27 Nov 2025, 5:18:03 PM | |
| JalviewFileChooser.js | 143 kB | 27 Nov 2025, 5:18:03 PM | |
| JalviewFileChooserTest.html | 110 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewFileChooserTest.js | 6 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_10g.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_10x.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_17u.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1ar.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_3b.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_3c.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_66.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_bn.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_cd.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_d7.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_d8.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ej.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fr.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fs.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_gz.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_hg.html | 12 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i2.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_id.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_j6.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_qu.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_st.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_tx.html | 10 kB | 27 Nov 2025, 5:18:06 PM | |
| JalviewFileFilter.html | 249 kB | 27 Nov 2025, 5:18:03 PM | |
| JalviewFileFilter.js | 66 kB | 27 Nov 2025, 5:18:03 PM | |
| JalviewFileView.html | 115 kB | 27 Nov 2025, 5:18:03 PM | |
| JalviewFileView.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| JalviewFileViewTest.html | 90 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewFileViewTest.js | 2 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewFileViewTest_testGetExtension_ib.html | 8 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewFileViewTest_testGetImageIcon_f6.html | 9 kB | 27 Nov 2025, 5:18:05 PM | |
| JalviewFileViewTest_testGetTypeDescription_1d9.html | 10 kB | 27 Nov 2025, 5:18:05 PM | |
| JnetAnnotationMaker.html | 126 kB | 27 Nov 2025, 5:18:03 PM | |
| JnetAnnotationMaker.js | 1 kB | 27 Nov 2025, 5:18:03 PM | |
| MSFfile.html | 212 kB | 27 Nov 2025, 5:18:04 PM | |
| MSFfile.js | 5 kB | 27 Nov 2025, 5:18:04 PM | |
| ModellerDescription.html | 236 kB | 27 Nov 2025, 5:18:03 PM | |
| ModellerDescription.js | 3 kB | 27 Nov 2025, 5:18:03 PM | |
| NewickFile.html | 529 kB | 27 Nov 2025, 5:18:03 PM | |
| NewickFile.js | 39 kB | 27 Nov 2025, 5:18:03 PM | |
| NewickFileTests.html | 121 kB | 27 Nov 2025, 5:18:05 PM | |
| NewickFileTests.js | 3 kB | 27 Nov 2025, 5:18:05 PM | |
| NewickFileTests_testTreeIO_11h.html | 33 kB | 27 Nov 2025, 5:18:05 PM | |
| NewickFileTests_testTreeIO_eb.html | 34 kB | 27 Nov 2025, 5:18:05 PM | |
| NewickFileTests_testTreeIO_p7.html | 35 kB | 27 Nov 2025, 5:18:05 PM | |
| PContactPredictionFile.html | 101 kB | 27 Nov 2025, 5:18:03 PM | |
| PContactPredictionFile.js | 1 kB | 27 Nov 2025, 5:18:03 PM | |
| PDBFeatureSettings.html | 121 kB | 27 Nov 2025, 5:18:03 PM | |
| PDBFeatureSettings.js | 8 kB | 27 Nov 2025, 5:18:03 PM | |
| PIRFile.html | 120 kB | 27 Nov 2025, 5:18:03 PM | |
| PIRFile.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| PfamFile.html | 131 kB | 27 Nov 2025, 5:18:03 PM | |
| PfamFile.js | 8 kB | 27 Nov 2025, 5:18:03 PM | |
| PfamFormatInputTest.html | 56 kB | 27 Nov 2025, 5:18:07 PM | |
| PfamFormatInputTest.js | 1.0 kB | 27 Nov 2025, 5:18:07 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_yx.html | 21 kB | 27 Nov 2025, 5:18:07 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_8a.html | 21 kB | 27 Nov 2025, 5:18:07 PM | |
| PhylipFile.html | 176 kB | 27 Nov 2025, 5:18:03 PM | |
| PhylipFile.js | 6 kB | 27 Nov 2025, 5:18:03 PM | |
| PhylipFileTests.html | 128 kB | 27 Nov 2025, 5:18:04 PM | |
| PhylipFileTests.js | 3 kB | 27 Nov 2025, 5:18:04 PM | |
| PhylipFileTests_testInterleavedDataExtraction_1cq.html | 19 kB | 27 Nov 2025, 5:18:04 PM | |
| PhylipFileTests_testInterleavedIO_6e.html | 26 kB | 27 Nov 2025, 5:18:04 PM | |
| PhylipFileTests_testSequentialDataExtraction_39.html | 19 kB | 27 Nov 2025, 5:18:05 PM | |
| PhylipFileTests_testSequentialIO_tz.html | 19 kB | 27 Nov 2025, 5:18:05 PM | |
| PileUpfile.html | 112 kB | 27 Nov 2025, 5:18:03 PM | |
| PileUpfile.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| RNAMLfileTest.html | 66 kB | 27 Nov 2025, 5:18:07 PM | |
| RNAMLfileTest.js | 1 kB | 27 Nov 2025, 5:18:07 PM | |
| RNAMLfileTest_testRnamlSeqImport_d0.html | 49 kB | 27 Nov 2025, 5:18:07 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_2t.html | 56 kB | 27 Nov 2025, 5:18:07 PM | |
| RnamlFile.html | 145 kB | 27 Nov 2025, 5:18:03 PM | |
| RnamlFile.js | 3 kB | 27 Nov 2025, 5:18:03 PM | |
| ScoreMatrixFile.html | 266 kB | 27 Nov 2025, 5:18:03 PM | |
| ScoreMatrixFile.js | 25 kB | 27 Nov 2025, 5:18:03 PM | |
| ScoreMatrixFileTest.html | 334 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest.js | 7 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_1b2.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_67.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_zo.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_ii.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
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| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_tc.html | 12 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_gd.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_o3.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_12d.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_3k.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_1b9.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
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| ScoreMatrixFileTest_testParse_ncbiFormat_12z.html | 12 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReport.html | 632 kB | 27 Nov 2025, 5:18:02 PM | |
| SequenceAnnotationReport.js | 41 kB | 27 Nov 2025, 5:18:02 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_98.html | 10 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_10b.html | 14 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_a7.html | 9 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_ro.html | 10 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_vy.html | 11 kB | 27 Nov 2025, 5:18:06 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_cj.html | 10 kB | 27 Nov 2025, 5:18:05 PM | |
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| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_19f.html | 14 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_9q.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_1ag.html | 11 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_ih.html | 18 kB | 27 Nov 2025, 5:18:05 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_7s.html | 14 kB | 27 Nov 2025, 5:18:05 PM | |
| SimpleBlastFile.html | 152 kB | 27 Nov 2025, 5:18:03 PM | |
| SimpleBlastFile.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| StockholmFile.html | 675 kB | 27 Nov 2025, 5:18:03 PM | |
| StockholmFile.js | 59 kB | 27 Nov 2025, 5:18:03 PM | |
| StockholmFileTest.html | 515 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest.js | 20 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_k.html | 52 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_dbrefOutput_jo.html | 45 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_descriptionLineOutput_15k.html | 43 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_detectWussBrackets_iy.html | 11 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_q3.html | 52 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_pfamFileDataExtraction_166.html | 76 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_pfamFileIO_19.html | 50 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_rfamFileIO_ez.html | 54 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_og.html | 49 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_19g.html | 46 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_m9.html | 27 kB | 27 Nov 2025, 5:18:04 PM | |
| StockholmFileTest_testAnnotationEquivalence_31.html | 12 kB | 27 Nov 2025, 5:18:04 PM | |
| StructureFile.html | 449 kB | 27 Nov 2025, 5:18:03 PM | |
| StructureFile.js | 98 kB | 27 Nov 2025, 5:18:03 PM | |
| TCoffeeScoreFile.html | 362 kB | 27 Nov 2025, 5:18:03 PM | |
| TCoffeeScoreFile.js | 14 kB | 27 Nov 2025, 5:18:03 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest.js | 3 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest_testGetAsArray_1.html | 11 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest_testGetAsList_5j.html | 11 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_rr.html | 11 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_1ac.html | 11 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest_testParse_1m.html | 11 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest_testReadBlock_16w.html | 10 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest_testReadHeader_zf.html | 12 kB | 27 Nov 2025, 5:18:07 PM | |
| TCoffeeScoreFileTest_testWrongFile_hx.html | 11 kB | 27 Nov 2025, 5:18:07 PM | |
| VamsasAppDatastore.html | 1.26 MB | 27 Nov 2025, 5:18:03 PM | |
| VamsasAppDatastore.js | 13 kB | 27 Nov 2025, 5:18:03 PM | |
| WSWUBlastClient.html | 177 kB | 27 Nov 2025, 5:18:03 PM | |
| WSWUBlastClient.js | 2 kB | 27 Nov 2025, 5:18:03 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 27 Nov 2025, 5:18:07 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 27 Nov 2025, 5:18:07 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_ac.html | 120 kB | 27 Nov 2025, 5:18:07 PM | |
| pkg-summary.html | 86 kB | 27 Nov 2025, 5:18:07 PM | |
| quick-wins.html | 32 kB | 27 Nov 2025, 5:18:07 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 27 Nov 2025, 5:17:48 PM | |
| test-AnnotationExporterTest.html | 9 kB | 27 Nov 2025, 5:17:48 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 27 Nov 2025, 5:17:48 PM | |
| test-BackupFilesTest.html | 11 kB | 27 Nov 2025, 5:17:48 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 27 Nov 2025, 5:17:48 PM | |
| test-ClustalFileTest.html | 9 kB | 27 Nov 2025, 5:17:48 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 27 Nov 2025, 5:17:48 PM | |
| test-EmblFlatFileTest.html | 11 kB | 27 Nov 2025, 5:17:48 PM | |
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| test-FileFormatsTest.html | 12 kB | 27 Nov 2025, 5:17:48 PM | |
| test-FileIOTester.html | 12 kB | 27 Nov 2025, 5:17:48 PM | |
| test-FileLoaderTest.html | 8 kB | 27 Nov 2025, 5:17:48 PM | |
| test-FormatAdapterTest.html | 13 kB | 27 Nov 2025, 5:17:48 PM | |
| test-GenBankFileTest.html | 9 kB | 27 Nov 2025, 5:17:48 PM | |
| test-HtmlFileTest.html | 8 kB | 27 Nov 2025, 5:17:48 PM | |
| test-IdentifyFileTest.html | 20 kB | 27 Nov 2025, 5:17:48 PM | |
| test-JSONFileTest.html | 13 kB | 27 Nov 2025, 5:17:48 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 27 Nov 2025, 5:17:48 PM | |
| test-JalviewFileChooserTest.html | 20 kB | 27 Nov 2025, 5:17:48 PM | |
| test-JalviewFileViewTest.html | 10 kB | 27 Nov 2025, 5:17:48 PM | |
| test-NewickFileTests.html | 10 kB | 27 Nov 2025, 5:17:48 PM | |
| test-PfamFormatInputTest.html | 9 kB | 27 Nov 2025, 5:17:48 PM | |
| test-PhylipFileTests.html | 10 kB | 27 Nov 2025, 5:17:48 PM | |
| test-RNAMLfileTest.html | 9 kB | 27 Nov 2025, 5:17:48 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 27 Nov 2025, 5:17:48 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 27 Nov 2025, 5:17:48 PM | |
| test-StockholmFileTest.html | 14 kB | 27 Nov 2025, 5:17:48 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 27 Nov 2025, 5:17:48 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 27 Nov 2025, 5:17:48 PM | |
| test-pkg-summary.html | 33 kB | 27 Nov 2025, 5:17:48 PM | |
| testsrc-pkg-summary.html | 46 kB | 27 Nov 2025, 5:18:07 PM | |
| top-risks.html | 33 kB | 27 Nov 2025, 5:18:07 PM |