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Build files
Jalview Builds - Gradle Develop Build - bug-JAL-4581_jalviewjs_support_for_java_security_messagedigest - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 28 Nov 2025, 5:59:48 PM | |
|
|
exceptions | 28 Nov 2025, 5:59:33 PM | |
|
|
gff | 28 Nov 2025, 5:59:47 PM | |
|
|
packed | 28 Nov 2025, 6:00:07 PM | |
|
|
vamsas | 28 Nov 2025, 5:59:26 PM | |
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vcf | 28 Nov 2025, 5:59:47 PM | |
| AMSAFile.html | 80 kB | 28 Nov 2025, 5:59:28 PM | |
| AMSAFile.js | 1 kB | 28 Nov 2025, 5:59:28 PM | |
| AlignFile.html | 706 kB | 28 Nov 2025, 5:59:28 PM | |
| AlignFile.js | 223 kB | 28 Nov 2025, 5:59:28 PM | |
| AlignmentFileReaderI.html | 36 kB | 28 Nov 2025, 5:59:27 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 28 Nov 2025, 5:59:27 PM | |
| AlignmentFileWriterI.html | 34 kB | 28 Nov 2025, 5:59:28 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 28 Nov 2025, 5:59:28 PM | |
| AlignmentProperties.html | 94 kB | 28 Nov 2025, 5:59:27 PM | |
| AlignmentProperties.js | 1 kB | 28 Nov 2025, 5:59:27 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_o6.html | 13 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_wj.html | 23 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_126.html | 17 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_26.html | 167 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotationExporterTest.html | 59 kB | 28 Nov 2025, 5:59:30 PM | |
| AnnotationExporterTest.js | 1 kB | 28 Nov 2025, 5:59:30 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_1cb.html | 116 kB | 28 Nov 2025, 5:59:30 PM | |
| AnnotationFile.html | 1.01 MB | 28 Nov 2025, 5:59:28 PM | |
| AnnotationFile.js | 62 kB | 28 Nov 2025, 5:59:28 PM | |
| AnnotationFileIOTest.html | 241 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotationFileIOTest.js | 5 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_1cx.html | 40 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_hw.html | 94 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotationFileIOTest_testCalcIdRestore_11z.html | 115 kB | 28 Nov 2025, 5:59:31 PM | |
| AnnotationFileIOTest_testProviderRestore_y0.html | 116 kB | 28 Nov 2025, 5:59:31 PM | |
| AppletFormatAdapter.html | 680 kB | 28 Nov 2025, 5:59:27 PM | |
| AppletFormatAdapter.js | 130 kB | 28 Nov 2025, 5:59:27 PM | |
| BLCFile.html | 153 kB | 28 Nov 2025, 5:59:28 PM | |
| BLCFile.js | 3 kB | 28 Nov 2025, 5:59:28 PM | |
| BackupFilenameFilter.html | 68 kB | 28 Nov 2025, 5:59:27 PM | |
| BackupFilenameFilter.js | 3 kB | 28 Nov 2025, 5:59:27 PM | |
| BackupFilenameParts.html | 129 kB | 28 Nov 2025, 5:59:28 PM | |
| BackupFilenameParts.js | 7 kB | 28 Nov 2025, 5:59:28 PM | |
| BackupFiles.html | 600 kB | 28 Nov 2025, 5:59:27 PM | |
| BackupFiles.js | 59 kB | 28 Nov 2025, 5:59:27 PM | |
| BackupFilesPresetEntry.html | 155 kB | 28 Nov 2025, 5:59:28 PM | |
| BackupFilesPresetEntry.js | 15 kB | 28 Nov 2025, 5:59:28 PM | |
| BackupFilesTest.html | 296 kB | 28 Nov 2025, 5:59:31 PM | |
| BackupFilesTest.js | 10 kB | 28 Nov 2025, 5:59:31 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_z6.html | 115 kB | 28 Nov 2025, 5:59:31 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_oc.html | 115 kB | 28 Nov 2025, 5:59:31 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_9h.html | 115 kB | 28 Nov 2025, 5:59:31 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_11x.html | 115 kB | 28 Nov 2025, 5:59:31 PM | |
| BackupFilesTest_noBackupsEnabledTest_im.html | 102 kB | 28 Nov 2025, 5:59:31 PM | |
| BioJsHTMLOutput.html | 280 kB | 28 Nov 2025, 5:59:28 PM | |
| BioJsHTMLOutput.js | 73 kB | 28 Nov 2025, 5:59:28 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 28 Nov 2025, 5:59:29 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 28 Nov 2025, 5:59:29 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_uu.html | 8 kB | 28 Nov 2025, 5:59:29 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_116.html | 8 kB | 28 Nov 2025, 5:59:29 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_3r.html | 22 kB | 28 Nov 2025, 5:59:29 PM | |
| ClustalFile.html | 158 kB | 28 Nov 2025, 5:59:28 PM | |
| ClustalFile.js | 6 kB | 28 Nov 2025, 5:59:28 PM | |
| ClustalFileTest.html | 65 kB | 28 Nov 2025, 5:59:31 PM | |
| ClustalFileTest.js | 1 kB | 28 Nov 2025, 5:59:31 PM | |
| ClustalFileTest_testParse_noNumbering_kw.html | 14 kB | 28 Nov 2025, 5:59:31 PM | |
| ClustalFileTest_testParse_withNumbering_rm.html | 14 kB | 28 Nov 2025, 5:59:31 PM | |
| CrossRef2xmlTests.html | 327 kB | 28 Nov 2025, 5:59:29 PM | |
| CrossRef2xmlTests.js | 4 kB | 28 Nov 2025, 5:59:29 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_3n.html | 181 kB | 28 Nov 2025, 5:59:29 PM | |
| DBRefFile.html | 43 kB | 28 Nov 2025, 5:59:28 PM | |
| DBRefFile.js | 0.6 kB | 28 Nov 2025, 5:59:28 PM | |
| DataSourceType.html | 269 kB | 28 Nov 2025, 5:59:27 PM | |
| DataSourceType.js | 25 kB | 28 Nov 2025, 5:59:27 PM | |
| EMBLLikeFlatFile.html | 429 kB | 28 Nov 2025, 5:59:28 PM | |
| EMBLLikeFlatFile.js | 16 kB | 28 Nov 2025, 5:59:28 PM | |
| EmblFlatFile.html | 134 kB | 28 Nov 2025, 5:59:27 PM | |
| EmblFlatFile.js | 4 kB | 28 Nov 2025, 5:59:27 PM | |
| EmblFlatFileTest.html | 229 kB | 28 Nov 2025, 5:59:31 PM | |
| EmblFlatFileTest.js | 5 kB | 28 Nov 2025, 5:59:31 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_kx.html | 12 kB | 28 Nov 2025, 5:59:31 PM | |
| EmblFlatFileTest_testParseToRNA_7.html | 22 kB | 28 Nov 2025, 5:59:31 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_19g.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| EmblFlatFileTest_testParse_lr.html | 22 kB | 28 Nov 2025, 5:59:31 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_1dp.html | 22 kB | 28 Nov 2025, 5:59:31 PM | |
| EmblFlatFileTest_testRemoveQuotes_i5.html | 12 kB | 28 Nov 2025, 5:59:31 PM | |
| FastaFile.html | 427 kB | 28 Nov 2025, 5:59:28 PM | |
| FastaFile.js | 111 kB | 28 Nov 2025, 5:59:28 PM | |
| FeaturesFile.html | 765 kB | 28 Nov 2025, 5:59:28 PM | |
| FeaturesFile.js | 27 kB | 28 Nov 2025, 5:59:28 PM | |
| FeaturesFileTest.html | 522 kB | 28 Nov 2025, 5:59:30 PM | |
| FeaturesFileTest.js | 13 kB | 28 Nov 2025, 5:59:30 PM | |
| FeaturesFileTest_readGff3File_as.html | 38 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_simpleGff3FileClass_dh.html | 36 kB | 28 Nov 2025, 5:59:30 PM | |
| FeaturesFileTest_simpleGff3FileLoader_bt.html | 130 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_kg.html | 46 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_testOutputFeatureFilters_12n.html | 17 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_testParseFilters_om.html | 19 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_testParse_18z.html | 103 kB | 28 Nov 2025, 5:59:30 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_17m.html | 101 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_jp.html | 102 kB | 28 Nov 2025, 5:59:30 PM | |
| FeaturesFileTest_testParse_pureGff3_gp.html | 120 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_ge.html | 111 kB | 28 Nov 2025, 5:59:30 PM | |
| FeaturesFileTest_testPrintGffFormat_z0.html | 94 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_testPrintJalviewFormat_13r.html | 115 kB | 28 Nov 2025, 5:59:31 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_fc.html | 111 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormat.html | 846 kB | 28 Nov 2025, 5:59:28 PM | |
| FileFormat.js | 86 kB | 28 Nov 2025, 5:59:28 PM | |
| FileFormatException.html | 58 kB | 28 Nov 2025, 5:59:28 PM | |
| FileFormatException.js | 2 kB | 28 Nov 2025, 5:59:28 PM | |
| FileFormatI.html | 47 kB | 28 Nov 2025, 5:59:27 PM | |
| FileFormatI.js | 0.7 kB | 28 Nov 2025, 5:59:27 PM | |
| FileFormats.html | 505 kB | 28 Nov 2025, 5:59:27 PM | |
| FileFormats.js | 76 kB | 28 Nov 2025, 5:59:27 PM | |
| FileFormatsTest.html | 137 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormatsTest.js | 3 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormatsTest_testDeregisterFileFormat_fg.html | 9 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormatsTest_testForName_o9.html | 9 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormatsTest_testGetFormats_cs.html | 9 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormatsTest_testGetReadableFormats_js.html | 9 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormatsTest_testGetWritableFormats_8t.html | 9 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormatsTest_testIsIdentifiable_pf.html | 9 kB | 28 Nov 2025, 5:59:31 PM | |
| FileFormatsTest_testRegisterFileFormat_vg.html | 9 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester.html | 130 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester.js | 3 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester_testGzipIo_iy.html | 13 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester_testGziplocalFileIO_lm.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester_testIsGzipInputStream_12o.html | 12 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester_testNonGzipURLIO_uk.html | 12 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester_testNonGziplocalFileIO_aj.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester_testStarsInFasta1_1a2.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| FileIOTester_testStarsInFasta2_pd.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| FileLoader.html | 601 kB | 28 Nov 2025, 5:59:28 PM | |
| FileLoader.js | 251 kB | 28 Nov 2025, 5:59:28 PM | |
| FileLoaderTest.html | 37 kB | 28 Nov 2025, 5:59:31 PM | |
| FileLoaderTest.js | 0.6 kB | 28 Nov 2025, 5:59:31 PM | |
| FileParse.html | 926 kB | 28 Nov 2025, 5:59:28 PM | |
| FileParse.js | 339 kB | 28 Nov 2025, 5:59:28 PM | |
| FormatAdapter.html | 458 kB | 28 Nov 2025, 5:59:27 PM | |
| FormatAdapter.js | 56 kB | 28 Nov 2025, 5:59:27 PM | |
| FormatAdapterTest.html | 112 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest.js | 5 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_16q.html | 21 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_19f.html | 24 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_19v.html | 28 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_1b9.html | 28 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_1d5.html | 31 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_1l.html | 21 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_ck.html | 23 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_dv.html | 24 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_j6.html | 44 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_kj.html | 22 kB | 28 Nov 2025, 5:59:30 PM | |
| FormatAdapterTest_testRoundTrip_rz.html | 22 kB | 28 Nov 2025, 5:59:30 PM | |
| GenBankFile.html | 121 kB | 28 Nov 2025, 5:59:27 PM | |
| GenBankFile.js | 2 kB | 28 Nov 2025, 5:59:27 PM | |
| GenBankFileTest.html | 132 kB | 28 Nov 2025, 5:59:29 PM | |
| GenBankFileTest.js | 3 kB | 28 Nov 2025, 5:59:29 PM | |
| GenBankFileTest_testParse_25.html | 19 kB | 28 Nov 2025, 5:59:29 PM | |
| HTMLOutput.html | 197 kB | 28 Nov 2025, 5:59:28 PM | |
| HTMLOutput.js | 2 kB | 28 Nov 2025, 5:59:28 PM | |
| HtmlFile.html | 132 kB | 28 Nov 2025, 5:59:28 PM | |
| HtmlFile.js | 2 kB | 28 Nov 2025, 5:59:28 PM | |
| HtmlFileTest.html | 39 kB | 28 Nov 2025, 5:59:31 PM | |
| HtmlFileTest.js | 0.6 kB | 28 Nov 2025, 5:59:31 PM | |
| HtmlSvgOutput.html | 173 kB | 28 Nov 2025, 5:59:28 PM | |
| HtmlSvgOutput.js | 2 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFile.html | 584 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFile.js | 233 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest.html | 150 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest.js | 5 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest_testIdentify_105.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_14v.html | 11 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest_testIdentify_150.html | 11 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest_testIdentify_187.html | 11 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest_testIdentify_1b5.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_1d9.html | 11 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest_testIdentify_1dm.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_4l.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_77.html | 11 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest_testIdentify_featureFile_b5.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_fs.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_gg.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_hf.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_iw.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_l0.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_mn.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_sn.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_sw.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_sy.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_tk.html | 11 kB | 28 Nov 2025, 5:59:28 PM | |
| IdentifyFileTest_testIdentify_v.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_xu.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testIdentify_yv.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_ou.html | 8 kB | 28 Nov 2025, 5:59:28 PM | |
| InputStreamParser.html | 44 kB | 28 Nov 2025, 5:59:28 PM | |
| InputStreamParser.js | 0.6 kB | 28 Nov 2025, 5:59:28 PM | |
| IntKeyStringValueEntry.html | 44 kB | 28 Nov 2025, 5:59:28 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 28 Nov 2025, 5:59:28 PM | |
| JPredFile.html | 220 kB | 28 Nov 2025, 5:59:28 PM | |
| JPredFile.js | 2 kB | 28 Nov 2025, 5:59:28 PM | |
| JSONFile.html | 508 kB | 28 Nov 2025, 5:59:27 PM | |
| JSONFile.js | 14 kB | 28 Nov 2025, 5:59:27 PM | |
| JSONFileTest.html | 364 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest.js | 6 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_colorSchemeTest_1an.html | 8 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_hiddenColsTest_a.html | 10 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_hiddenSeqsTest_6f.html | 8 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_isShowSeqFeaturesSet_xe.html | 8 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_roundTripTest_1dr.html | 7 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_testAnnotationParsed_1cl.html | 8 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_10.html | 105 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_testGrpParsed_colourNone_109.html | 117 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_testGrpParsed_k2.html | 10 kB | 28 Nov 2025, 5:59:29 PM | |
| JSONFileTest_testSeqParsed_13h.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| Jalview2xmlBase.html | 78 kB | 28 Nov 2025, 5:59:29 PM | |
| Jalview2xmlBase.js | 1 kB | 28 Nov 2025, 5:59:29 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 28 Nov 2025, 5:59:29 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 28 Nov 2025, 5:59:29 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_1m.html | 142 kB | 28 Nov 2025, 5:59:29 PM | |
| JalviewFileChooser.html | 635 kB | 28 Nov 2025, 5:59:28 PM | |
| JalviewFileChooser.js | 135 kB | 28 Nov 2025, 5:59:28 PM | |
| JalviewFileChooserTest.html | 103 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest.js | 5 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_17z.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_18p.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1h.html | 12 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_4r.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_6t.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_8q.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_8y.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_9d.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_b6.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_c8.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_hd.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_i4.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_l6.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_o5.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_un.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_y.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileFilter.html | 242 kB | 28 Nov 2025, 5:59:28 PM | |
| JalviewFileFilter.js | 63 kB | 28 Nov 2025, 5:59:28 PM | |
| JalviewFileView.html | 115 kB | 28 Nov 2025, 5:59:28 PM | |
| JalviewFileView.js | 2 kB | 28 Nov 2025, 5:59:28 PM | |
| JalviewFileViewTest.html | 90 kB | 28 Nov 2025, 5:59:29 PM | |
| JalviewFileViewTest.js | 2 kB | 28 Nov 2025, 5:59:29 PM | |
| JalviewFileViewTest_testGetExtension_ed.html | 8 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileViewTest_testGetImageIcon_1bt.html | 9 kB | 28 Nov 2025, 5:59:30 PM | |
| JalviewFileViewTest_testGetTypeDescription_pl.html | 10 kB | 28 Nov 2025, 5:59:29 PM | |
| JnetAnnotationMaker.html | 126 kB | 28 Nov 2025, 5:59:28 PM | |
| JnetAnnotationMaker.js | 1 kB | 28 Nov 2025, 5:59:28 PM | |
| MSFfile.html | 212 kB | 28 Nov 2025, 5:59:28 PM | |
| MSFfile.js | 5 kB | 28 Nov 2025, 5:59:28 PM | |
| ModellerDescription.html | 236 kB | 28 Nov 2025, 5:59:28 PM | |
| ModellerDescription.js | 3 kB | 28 Nov 2025, 5:59:28 PM | |
| NewickFile.html | 529 kB | 28 Nov 2025, 5:59:28 PM | |
| NewickFile.js | 39 kB | 28 Nov 2025, 5:59:28 PM | |
| NewickFileTests.html | 121 kB | 28 Nov 2025, 5:59:30 PM | |
| NewickFileTests.js | 3 kB | 28 Nov 2025, 5:59:30 PM | |
| NewickFileTests_testTreeIO_b.html | 35 kB | 28 Nov 2025, 5:59:30 PM | |
| NewickFileTests_testTreeIO_fy.html | 34 kB | 28 Nov 2025, 5:59:30 PM | |
| NewickFileTests_testTreeIO_o4.html | 33 kB | 28 Nov 2025, 5:59:30 PM | |
| PContactPredictionFile.html | 101 kB | 28 Nov 2025, 5:59:28 PM | |
| PContactPredictionFile.js | 1 kB | 28 Nov 2025, 5:59:28 PM | |
| PDBFeatureSettings.html | 121 kB | 28 Nov 2025, 5:59:28 PM | |
| PDBFeatureSettings.js | 8 kB | 28 Nov 2025, 5:59:28 PM | |
| PIRFile.html | 120 kB | 28 Nov 2025, 5:59:27 PM | |
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| PfamFile.html | 131 kB | 28 Nov 2025, 5:59:28 PM | |
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| PfamFormatInputTest.html | 56 kB | 28 Nov 2025, 5:59:31 PM | |
| PfamFormatInputTest.js | 1.0 kB | 28 Nov 2025, 5:59:31 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_ji.html | 22 kB | 28 Nov 2025, 5:59:31 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_zd.html | 19 kB | 28 Nov 2025, 5:59:31 PM | |
| PhylipFile.html | 176 kB | 28 Nov 2025, 5:59:27 PM | |
| PhylipFile.js | 6 kB | 28 Nov 2025, 5:59:27 PM | |
| PhylipFileTests.html | 128 kB | 28 Nov 2025, 5:59:29 PM | |
| PhylipFileTests.js | 3 kB | 28 Nov 2025, 5:59:29 PM | |
| PhylipFileTests_testInterleavedDataExtraction_r4.html | 21 kB | 28 Nov 2025, 5:59:29 PM | |
| PhylipFileTests_testInterleavedIO_13p.html | 26 kB | 28 Nov 2025, 5:59:29 PM | |
| PhylipFileTests_testSequentialDataExtraction_d2.html | 20 kB | 28 Nov 2025, 5:59:29 PM | |
| PhylipFileTests_testSequentialIO_11b.html | 26 kB | 28 Nov 2025, 5:59:29 PM | |
| PileUpfile.html | 112 kB | 28 Nov 2025, 5:59:28 PM | |
| PileUpfile.js | 2 kB | 28 Nov 2025, 5:59:28 PM | |
| RNAMLfileTest.html | 66 kB | 28 Nov 2025, 5:59:31 PM | |
| RNAMLfileTest.js | 1 kB | 28 Nov 2025, 5:59:31 PM | |
| RNAMLfileTest_testRnamlSeqImport_gt.html | 39 kB | 28 Nov 2025, 5:59:31 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_14r.html | 56 kB | 28 Nov 2025, 5:59:31 PM | |
| RnamlFile.html | 145 kB | 28 Nov 2025, 5:59:28 PM | |
| RnamlFile.js | 3 kB | 28 Nov 2025, 5:59:28 PM | |
| ScoreMatrixFile.html | 266 kB | 28 Nov 2025, 5:59:28 PM | |
| ScoreMatrixFile.js | 25 kB | 28 Nov 2025, 5:59:28 PM | |
| ScoreMatrixFileTest.html | 334 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest.js | 7 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_6s.html | 19 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_ic.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_16w.html | 12 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_rb.html | 17 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_5k.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_165.html | 22 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_xg.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_14c.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_ks.html | 12 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_100.html | 21 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_v1.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_11i.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_pw.html | 15 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_r1.html | 21 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_4z.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_w7.html | 14 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_w0.html | 13 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_d1.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_1c8.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_qv.html | 12 kB | 28 Nov 2025, 5:59:29 PM | |
| SequenceAnnotationReport.html | 632 kB | 28 Nov 2025, 5:59:27 PM | |
| SequenceAnnotationReport.js | 41 kB | 28 Nov 2025, 5:59:27 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_t0.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_1b0.html | 14 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_aw.html | 9 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_13b.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_ip.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_r5.html | 10 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_2y.html | 18 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_31.html | 14 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_197.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_y7.html | 11 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_2a.html | 18 kB | 28 Nov 2025, 5:59:30 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_2m.html | 14 kB | 28 Nov 2025, 5:59:30 PM | |
| SimpleBlastFile.html | 152 kB | 28 Nov 2025, 5:59:28 PM | |
| SimpleBlastFile.js | 2 kB | 28 Nov 2025, 5:59:28 PM | |
| StockholmFile.html | 675 kB | 28 Nov 2025, 5:59:28 PM | |
| StockholmFile.js | 60 kB | 28 Nov 2025, 5:59:28 PM | |
| StockholmFileTest.html | 515 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest.js | 20 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_ej.html | 69 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_dbrefOutput_103.html | 44 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_descriptionLineOutput_yw.html | 41 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_detectWussBrackets_19.html | 11 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_i8.html | 80 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_pfamFileDataExtraction_10z.html | 65 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_pfamFileIO_7j.html | 75 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_rfamFileIO_3s.html | 55 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_wa.html | 49 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_wr.html | 46 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_19w.html | 27 kB | 28 Nov 2025, 5:59:29 PM | |
| StockholmFileTest_testAnnotationEquivalence_18j.html | 13 kB | 28 Nov 2025, 5:59:29 PM | |
| StructureFile.html | 449 kB | 28 Nov 2025, 5:59:28 PM | |
| StructureFile.js | 97 kB | 28 Nov 2025, 5:59:28 PM | |
| TCoffeeScoreFile.html | 362 kB | 28 Nov 2025, 5:59:27 PM | |
| TCoffeeScoreFile.js | 15 kB | 28 Nov 2025, 5:59:27 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest_testGetAsArray_cq.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest_testGetAsList_u3.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_4b.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_ep.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest_testParse_gl.html | 11 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest_testReadBlock_14y.html | 10 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest_testReadHeader_123.html | 12 kB | 28 Nov 2025, 5:59:31 PM | |
| TCoffeeScoreFileTest_testWrongFile_15c.html | 10 kB | 28 Nov 2025, 5:59:31 PM | |
| VamsasAppDatastore.html | 1.26 MB | 28 Nov 2025, 5:59:28 PM | |
| VamsasAppDatastore.js | 13 kB | 28 Nov 2025, 5:59:28 PM | |
| WSWUBlastClient.html | 177 kB | 28 Nov 2025, 5:59:27 PM | |
| WSWUBlastClient.js | 2 kB | 28 Nov 2025, 5:59:27 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 28 Nov 2025, 5:59:31 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 28 Nov 2025, 5:59:31 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_1c5.html | 119 kB | 28 Nov 2025, 5:59:31 PM | |
| pkg-summary.html | 85 kB | 28 Nov 2025, 5:59:31 PM | |
| quick-wins.html | 31 kB | 28 Nov 2025, 5:59:31 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 28 Nov 2025, 5:59:15 PM | |
| test-AnnotationExporterTest.html | 9 kB | 28 Nov 2025, 5:59:15 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 28 Nov 2025, 5:59:15 PM | |
| test-BackupFilesTest.html | 11 kB | 28 Nov 2025, 5:59:15 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 28 Nov 2025, 5:59:15 PM | |
| test-ClustalFileTest.html | 9 kB | 28 Nov 2025, 5:59:15 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 28 Nov 2025, 5:59:15 PM | |
| test-EmblFlatFileTest.html | 11 kB | 28 Nov 2025, 5:59:15 PM | |
| test-FeaturesFileTest.html | 15 kB | 28 Nov 2025, 5:59:15 PM | |
| test-FileFormatsTest.html | 12 kB | 28 Nov 2025, 5:59:15 PM | |
| test-FileIOTester.html | 12 kB | 28 Nov 2025, 5:59:15 PM | |
| test-FileLoaderTest.html | 8 kB | 28 Nov 2025, 5:59:15 PM | |
| test-FormatAdapterTest.html | 13 kB | 28 Nov 2025, 5:59:15 PM | |
| test-GenBankFileTest.html | 9 kB | 28 Nov 2025, 5:59:15 PM | |
| test-HtmlFileTest.html | 8 kB | 28 Nov 2025, 5:59:15 PM | |
| test-IdentifyFileTest.html | 20 kB | 28 Nov 2025, 5:59:15 PM | |
| test-JSONFileTest.html | 13 kB | 28 Nov 2025, 5:59:15 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 28 Nov 2025, 5:59:15 PM | |
| test-JalviewFileChooserTest.html | 17 kB | 28 Nov 2025, 5:59:15 PM | |
| test-JalviewFileViewTest.html | 10 kB | 28 Nov 2025, 5:59:15 PM | |
| test-NewickFileTests.html | 10 kB | 28 Nov 2025, 5:59:15 PM | |
| test-PfamFormatInputTest.html | 9 kB | 28 Nov 2025, 5:59:15 PM | |
| test-PhylipFileTests.html | 10 kB | 28 Nov 2025, 5:59:15 PM | |
| test-RNAMLfileTest.html | 9 kB | 28 Nov 2025, 5:59:15 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 28 Nov 2025, 5:59:15 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 28 Nov 2025, 5:59:15 PM | |
| test-StockholmFileTest.html | 14 kB | 28 Nov 2025, 5:59:15 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 28 Nov 2025, 5:59:15 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 28 Nov 2025, 5:59:15 PM | |
| test-pkg-summary.html | 33 kB | 28 Nov 2025, 5:59:15 PM | |
| testsrc-pkg-summary.html | 46 kB | 28 Nov 2025, 5:59:31 PM | |
| top-risks.html | 32 kB | 28 Nov 2025, 5:59:31 PM |