None
Build files
Jalview Builds - Gradle Develop Build - feature-JAL-4602_Hide_All_SS_consensus_for_single_provider - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
|
cache | 12 Nov 2025, 1:13:19 PM | |
|
|
exceptions | 12 Nov 2025, 1:13:04 PM | |
|
|
gff | 12 Nov 2025, 1:13:18 PM | |
|
|
packed | 12 Nov 2025, 1:13:39 PM | |
|
|
vamsas | 12 Nov 2025, 1:12:57 PM | |
|
|
vcf | 12 Nov 2025, 1:13:17 PM | |
| AMSAFile.html | 80 kB | 12 Nov 2025, 1:12:58 PM | |
| AMSAFile.js | 1 kB | 12 Nov 2025, 1:12:58 PM | |
| AlignFile.html | 705 kB | 12 Nov 2025, 1:12:58 PM | |
| AlignFile.js | 221 kB | 12 Nov 2025, 1:12:58 PM | |
| AlignmentFileReaderI.html | 36 kB | 12 Nov 2025, 1:12:57 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 12 Nov 2025, 1:12:57 PM | |
| AlignmentFileWriterI.html | 34 kB | 12 Nov 2025, 1:12:58 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 12 Nov 2025, 1:12:58 PM | |
| AlignmentProperties.html | 94 kB | 12 Nov 2025, 1:12:57 PM | |
| AlignmentProperties.js | 1 kB | 12 Nov 2025, 1:12:57 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_5p.html | 9 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_8a.html | 15 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_sw.html | 20 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_vc.html | 171 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotationExporterTest.html | 59 kB | 12 Nov 2025, 1:13:00 PM | |
| AnnotationExporterTest.js | 1 kB | 12 Nov 2025, 1:13:00 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_1c6.html | 116 kB | 12 Nov 2025, 1:13:00 PM | |
| AnnotationFile.html | 1.01 MB | 12 Nov 2025, 1:12:58 PM | |
| AnnotationFile.js | 59 kB | 12 Nov 2025, 1:12:58 PM | |
| AnnotationFileIOTest.html | 241 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotationFileIOTest.js | 5 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_bl.html | 41 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_qg.html | 108 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotationFileIOTest_testCalcIdRestore_h2.html | 117 kB | 12 Nov 2025, 1:13:02 PM | |
| AnnotationFileIOTest_testProviderRestore_d1.html | 115 kB | 12 Nov 2025, 1:13:02 PM | |
| AppletFormatAdapter.html | 680 kB | 12 Nov 2025, 1:12:57 PM | |
| AppletFormatAdapter.js | 129 kB | 12 Nov 2025, 1:12:57 PM | |
| BLCFile.html | 153 kB | 12 Nov 2025, 1:12:59 PM | |
| BLCFile.js | 3 kB | 12 Nov 2025, 1:12:59 PM | |
| BackupFilenameFilter.html | 68 kB | 12 Nov 2025, 1:12:58 PM | |
| BackupFilenameFilter.js | 3 kB | 12 Nov 2025, 1:12:58 PM | |
| BackupFilenameParts.html | 129 kB | 12 Nov 2025, 1:12:58 PM | |
| BackupFilenameParts.js | 7 kB | 12 Nov 2025, 1:12:58 PM | |
| BackupFiles.html | 600 kB | 12 Nov 2025, 1:12:58 PM | |
| BackupFiles.js | 58 kB | 12 Nov 2025, 1:12:58 PM | |
| BackupFilesPresetEntry.html | 155 kB | 12 Nov 2025, 1:12:58 PM | |
| BackupFilesPresetEntry.js | 15 kB | 12 Nov 2025, 1:12:58 PM | |
| BackupFilesTest.html | 296 kB | 12 Nov 2025, 1:13:02 PM | |
| BackupFilesTest.js | 9 kB | 12 Nov 2025, 1:13:02 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_bt.html | 115 kB | 12 Nov 2025, 1:13:02 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_199.html | 116 kB | 12 Nov 2025, 1:13:02 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_jl.html | 115 kB | 12 Nov 2025, 1:13:02 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_o0.html | 115 kB | 12 Nov 2025, 1:13:02 PM | |
| BackupFilesTest_noBackupsEnabledTest_du.html | 102 kB | 12 Nov 2025, 1:13:02 PM | |
| BioJsHTMLOutput.html | 278 kB | 12 Nov 2025, 1:12:58 PM | |
| BioJsHTMLOutput.js | 73 kB | 12 Nov 2025, 1:12:59 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 12 Nov 2025, 1:12:59 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 12 Nov 2025, 1:12:59 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_12a.html | 8 kB | 12 Nov 2025, 1:12:59 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_3m.html | 8 kB | 12 Nov 2025, 1:12:59 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_8n.html | 21 kB | 12 Nov 2025, 1:12:59 PM | |
| ClustalFile.html | 158 kB | 12 Nov 2025, 1:12:59 PM | |
| ClustalFile.js | 6 kB | 12 Nov 2025, 1:12:59 PM | |
| ClustalFileTest.html | 65 kB | 12 Nov 2025, 1:13:02 PM | |
| ClustalFileTest.js | 1 kB | 12 Nov 2025, 1:13:02 PM | |
| ClustalFileTest_testParse_noNumbering_fy.html | 14 kB | 12 Nov 2025, 1:13:02 PM | |
| ClustalFileTest_testParse_withNumbering_18t.html | 14 kB | 12 Nov 2025, 1:13:02 PM | |
| CrossRef2xmlTests.html | 327 kB | 12 Nov 2025, 1:12:59 PM | |
| CrossRef2xmlTests.js | 4 kB | 12 Nov 2025, 1:12:59 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_eh.html | 181 kB | 12 Nov 2025, 1:12:59 PM | |
| DBRefFile.html | 43 kB | 12 Nov 2025, 1:12:59 PM | |
| DBRefFile.js | 0.6 kB | 12 Nov 2025, 1:12:59 PM | |
| DataSourceType.html | 269 kB | 12 Nov 2025, 1:12:58 PM | |
| DataSourceType.js | 24 kB | 12 Nov 2025, 1:12:58 PM | |
| EMBLLikeFlatFile.html | 429 kB | 12 Nov 2025, 1:12:58 PM | |
| EMBLLikeFlatFile.js | 16 kB | 12 Nov 2025, 1:12:58 PM | |
| EmblFlatFile.html | 134 kB | 12 Nov 2025, 1:12:57 PM | |
| EmblFlatFile.js | 4 kB | 12 Nov 2025, 1:12:57 PM | |
| EmblFlatFileTest.html | 229 kB | 12 Nov 2025, 1:13:01 PM | |
| EmblFlatFileTest.js | 5 kB | 12 Nov 2025, 1:13:01 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_1cb.html | 12 kB | 12 Nov 2025, 1:13:01 PM | |
| EmblFlatFileTest_testParseToRNA_oq.html | 23 kB | 12 Nov 2025, 1:13:01 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_j8.html | 12 kB | 12 Nov 2025, 1:13:01 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_nh.html | 22 kB | 12 Nov 2025, 1:13:01 PM | |
| EmblFlatFileTest_testParse_x5.html | 22 kB | 12 Nov 2025, 1:13:01 PM | |
| EmblFlatFileTest_testRemoveQuotes_u6.html | 12 kB | 12 Nov 2025, 1:13:01 PM | |
| FastaFile.html | 427 kB | 12 Nov 2025, 1:12:59 PM | |
| FastaFile.js | 111 kB | 12 Nov 2025, 1:12:59 PM | |
| FeaturesFile.html | 765 kB | 12 Nov 2025, 1:12:58 PM | |
| FeaturesFile.js | 27 kB | 12 Nov 2025, 1:12:58 PM | |
| FeaturesFileTest.html | 522 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest.js | 13 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_readGff3File_13d.html | 43 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_simpleGff3FileClass_u1.html | 44 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_simpleGff3FileLoader_t0.html | 118 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_gv.html | 46 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testOutputFeatureFilters_jy.html | 17 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testParseFilters_nv.html | 18 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_lp.html | 114 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_pf.html | 121 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testParse_pureGff3_98.html | 97 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testParse_uy.html | 96 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testPrintGffFormat_fi.html | 117 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_19b.html | 119 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testPrintJalviewFormat_19a.html | 92 kB | 12 Nov 2025, 1:13:01 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_6j.html | 111 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormat.html | 846 kB | 12 Nov 2025, 1:12:58 PM | |
| FileFormat.js | 85 kB | 12 Nov 2025, 1:12:58 PM | |
| FileFormatException.html | 58 kB | 12 Nov 2025, 1:12:59 PM | |
| FileFormatException.js | 2 kB | 12 Nov 2025, 1:12:59 PM | |
| FileFormatI.html | 47 kB | 12 Nov 2025, 1:12:58 PM | |
| FileFormatI.js | 0.7 kB | 12 Nov 2025, 1:12:58 PM | |
| FileFormats.html | 510 kB | 12 Nov 2025, 1:12:58 PM | |
| FileFormats.js | 76 kB | 12 Nov 2025, 1:12:58 PM | |
| FileFormatsTest.html | 137 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormatsTest.js | 3 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormatsTest_testDeregisterFileFormat_59.html | 9 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormatsTest_testForName_17s.html | 9 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormatsTest_testGetFormats_ok.html | 9 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormatsTest_testGetReadableFormats_9y.html | 9 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormatsTest_testGetWritableFormats_115.html | 9 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormatsTest_testIsIdentifiable_14v.html | 9 kB | 12 Nov 2025, 1:13:01 PM | |
| FileFormatsTest_testRegisterFileFormat_qd.html | 9 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester.html | 130 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester.js | 3 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester_testGzipIo_1b.html | 12 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester_testGziplocalFileIO_190.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester_testIsGzipInputStream_15o.html | 12 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester_testNonGzipURLIO_1cj.html | 12 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester_testNonGziplocalFileIO_xk.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester_testStarsInFasta1_mi.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| FileIOTester_testStarsInFasta2_td.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| FileLoader.html | 601 kB | 12 Nov 2025, 1:12:58 PM | |
| FileLoader.js | 249 kB | 12 Nov 2025, 1:12:58 PM | |
| FileLoaderTest.html | 37 kB | 12 Nov 2025, 1:13:02 PM | |
| FileLoaderTest.js | 0.6 kB | 12 Nov 2025, 1:13:02 PM | |
| FileParse.html | 923 kB | 12 Nov 2025, 1:12:58 PM | |
| FileParse.js | 336 kB | 12 Nov 2025, 1:12:58 PM | |
| FormatAdapter.html | 458 kB | 12 Nov 2025, 1:12:57 PM | |
| FormatAdapter.js | 55 kB | 12 Nov 2025, 1:12:57 PM | |
| FormatAdapterTest.html | 112 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest.js | 5 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_196.html | 29 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_1al.html | 22 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_1z.html | 31 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_2e.html | 31 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_8y.html | 23 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_cu.html | 25 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_ed.html | 25 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_fz.html | 26 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_k2.html | 23 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_w8.html | 48 kB | 12 Nov 2025, 1:13:00 PM | |
| FormatAdapterTest_testRoundTrip_x0.html | 21 kB | 12 Nov 2025, 1:13:00 PM | |
| GenBankFile.html | 121 kB | 12 Nov 2025, 1:12:57 PM | |
| GenBankFile.js | 2 kB | 12 Nov 2025, 1:12:57 PM | |
| GenBankFileTest.html | 132 kB | 12 Nov 2025, 1:13:00 PM | |
| GenBankFileTest.js | 3 kB | 12 Nov 2025, 1:13:00 PM | |
| GenBankFileTest_testParse_f.html | 19 kB | 12 Nov 2025, 1:13:00 PM | |
| HTMLOutput.html | 197 kB | 12 Nov 2025, 1:12:58 PM | |
| HTMLOutput.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| HtmlFile.html | 132 kB | 12 Nov 2025, 1:12:58 PM | |
| HtmlFile.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| HtmlFileTest.html | 39 kB | 12 Nov 2025, 1:13:01 PM | |
| HtmlFileTest.js | 0.6 kB | 12 Nov 2025, 1:13:01 PM | |
| HtmlSvgOutput.html | 173 kB | 12 Nov 2025, 1:12:58 PM | |
| HtmlSvgOutput.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| IdentifyFile.html | 581 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFile.js | 230 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest.html | 148 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest.js | 5 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_11n.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_129.html | 13 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_15m.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_172.html | 13 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_17g.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_1b3.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_1dm.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_41.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_4q.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_5n.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_77.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_8u.html | 13 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_b1.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_en.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_featureFile_um.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_go.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_hl.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_ln.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_pj.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_r9.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testIdentify_xg.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_j2.html | 8 kB | 12 Nov 2025, 1:12:59 PM | |
| InputStreamParser.html | 44 kB | 12 Nov 2025, 1:12:58 PM | |
| InputStreamParser.js | 0.6 kB | 12 Nov 2025, 1:12:58 PM | |
| IntKeyStringValueEntry.html | 44 kB | 12 Nov 2025, 1:12:59 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 12 Nov 2025, 1:12:59 PM | |
| JPredFile.html | 220 kB | 12 Nov 2025, 1:12:58 PM | |
| JPredFile.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| JSONFile.html | 508 kB | 12 Nov 2025, 1:12:58 PM | |
| JSONFile.js | 14 kB | 12 Nov 2025, 1:12:58 PM | |
| JSONFileTest.html | 364 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest.js | 6 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_colorSchemeTest_r5.html | 8 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_hiddenColsTest_7d.html | 10 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_hiddenSeqsTest_6h.html | 8 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_isShowSeqFeaturesSet_c7.html | 10 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_roundTripTest_3g.html | 7 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_testAnnotationParsed_jo.html | 8 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_1dk.html | 105 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_testGrpParsed_ac.html | 10 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_testGrpParsed_colourNone_18v.html | 125 kB | 12 Nov 2025, 1:13:00 PM | |
| JSONFileTest_testSeqParsed_183.html | 11 kB | 12 Nov 2025, 1:13:00 PM | |
| Jalview2xmlBase.html | 78 kB | 12 Nov 2025, 1:13:00 PM | |
| Jalview2xmlBase.js | 1 kB | 12 Nov 2025, 1:13:00 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 12 Nov 2025, 1:13:00 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 12 Nov 2025, 1:13:00 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_116.html | 124 kB | 12 Nov 2025, 1:13:00 PM | |
| JalviewFileChooser.html | 652 kB | 12 Nov 2025, 1:12:58 PM | |
| JalviewFileChooser.js | 139 kB | 12 Nov 2025, 1:12:58 PM | |
| JalviewFileChooserTest.html | 113 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest.js | 7 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_11.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_11l.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_11r.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_124.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12h.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12z.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_17b.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_17p.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_19p.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1ap.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1b6.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1be.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1c7.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_7a.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_9r.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_9x.html | 14 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_e7.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ey.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_fk.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_hw.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_lb.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_pa.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_vm.html | 10 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_xo.html | 11 kB | 12 Nov 2025, 1:13:01 PM | |
| JalviewFileFilter.html | 246 kB | 12 Nov 2025, 1:12:59 PM | |
| JalviewFileFilter.js | 64 kB | 12 Nov 2025, 1:12:59 PM | |
| JalviewFileView.html | 115 kB | 12 Nov 2025, 1:12:58 PM | |
| JalviewFileView.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| JalviewFileViewTest.html | 90 kB | 12 Nov 2025, 1:13:00 PM | |
| JalviewFileViewTest.js | 2 kB | 12 Nov 2025, 1:13:00 PM | |
| JalviewFileViewTest_testGetExtension_12y.html | 8 kB | 12 Nov 2025, 1:13:00 PM | |
| JalviewFileViewTest_testGetImageIcon_tb.html | 9 kB | 12 Nov 2025, 1:13:00 PM | |
| JalviewFileViewTest_testGetTypeDescription_on.html | 10 kB | 12 Nov 2025, 1:13:00 PM | |
| JnetAnnotationMaker.html | 126 kB | 12 Nov 2025, 1:12:58 PM | |
| JnetAnnotationMaker.js | 1 kB | 12 Nov 2025, 1:12:58 PM | |
| MSFfile.html | 212 kB | 12 Nov 2025, 1:12:59 PM | |
| MSFfile.js | 5 kB | 12 Nov 2025, 1:12:59 PM | |
| ModellerDescription.html | 236 kB | 12 Nov 2025, 1:12:58 PM | |
| ModellerDescription.js | 3 kB | 12 Nov 2025, 1:12:58 PM | |
| NewickFile.html | 529 kB | 12 Nov 2025, 1:12:58 PM | |
| NewickFile.js | 38 kB | 12 Nov 2025, 1:12:58 PM | |
| NewickFileTests.html | 121 kB | 12 Nov 2025, 1:13:00 PM | |
| NewickFileTests.js | 3 kB | 12 Nov 2025, 1:13:00 PM | |
| NewickFileTests_testTreeIO_10x.html | 33 kB | 12 Nov 2025, 1:13:00 PM | |
| NewickFileTests_testTreeIO_cc.html | 36 kB | 12 Nov 2025, 1:13:00 PM | |
| NewickFileTests_testTreeIO_og.html | 36 kB | 12 Nov 2025, 1:13:00 PM | |
| PContactPredictionFile.html | 101 kB | 12 Nov 2025, 1:12:58 PM | |
| PContactPredictionFile.js | 1 kB | 12 Nov 2025, 1:12:58 PM | |
| PDBFeatureSettings.html | 121 kB | 12 Nov 2025, 1:12:58 PM | |
| PDBFeatureSettings.js | 8 kB | 12 Nov 2025, 1:12:58 PM | |
| PIRFile.html | 120 kB | 12 Nov 2025, 1:12:58 PM | |
| PIRFile.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| PfamFile.html | 131 kB | 12 Nov 2025, 1:12:58 PM | |
| PfamFile.js | 8 kB | 12 Nov 2025, 1:12:58 PM | |
| PfamFormatInputTest.html | 56 kB | 12 Nov 2025, 1:13:02 PM | |
| PfamFormatInputTest.js | 1 kB | 12 Nov 2025, 1:13:02 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_11i.html | 26 kB | 12 Nov 2025, 1:13:02 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_15v.html | 21 kB | 12 Nov 2025, 1:13:02 PM | |
| PhylipFile.html | 176 kB | 12 Nov 2025, 1:12:58 PM | |
| PhylipFile.js | 6 kB | 12 Nov 2025, 1:12:58 PM | |
| PhylipFileTests.html | 128 kB | 12 Nov 2025, 1:12:59 PM | |
| PhylipFileTests.js | 3 kB | 12 Nov 2025, 1:12:59 PM | |
| PhylipFileTests_testInterleavedDataExtraction_6b.html | 19 kB | 12 Nov 2025, 1:12:59 PM | |
| PhylipFileTests_testInterleavedIO_121.html | 26 kB | 12 Nov 2025, 1:12:59 PM | |
| PhylipFileTests_testSequentialDataExtraction_1aw.html | 19 kB | 12 Nov 2025, 1:12:59 PM | |
| PhylipFileTests_testSequentialIO_km.html | 26 kB | 12 Nov 2025, 1:12:59 PM | |
| PileUpfile.html | 112 kB | 12 Nov 2025, 1:12:58 PM | |
| PileUpfile.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| RNAMLfileTest.html | 66 kB | 12 Nov 2025, 1:13:02 PM | |
| RNAMLfileTest.js | 1 kB | 12 Nov 2025, 1:13:02 PM | |
| RNAMLfileTest_testRnamlSeqImport_co.html | 35 kB | 12 Nov 2025, 1:13:02 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_z8.html | 71 kB | 12 Nov 2025, 1:13:02 PM | |
| RnamlFile.html | 145 kB | 12 Nov 2025, 1:12:58 PM | |
| RnamlFile.js | 3 kB | 12 Nov 2025, 1:12:58 PM | |
| ScoreMatrixFile.html | 266 kB | 12 Nov 2025, 1:12:58 PM | |
| ScoreMatrixFile.js | 24 kB | 12 Nov 2025, 1:12:58 PM | |
| ScoreMatrixFileTest.html | 334 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest.js | 7 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_ka.html | 15 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_18n.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_w6.html | 11 kB | 12 Nov 2025, 1:13:00 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_h8.html | 14 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_rowColMismatch_p6.html | 15 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooFewColumns_cw.html | 13 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_tooManyRows_14m.html | 14 kB | 12 Nov 2025, 1:13:00 PM | |
| ScoreMatrixFileTest_testParseMatrix_headerMissing_45.html | 21 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_y1.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadFloat_7y.html | 15 kB | 12 Nov 2025, 1:13:00 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadGuideCharacter_9j.html | 12 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiFormat_h.html | 11 kB | 12 Nov 2025, 1:13:00 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiHeaderRepeated_cl.html | 14 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiMixedDelimiters_12x.html | 14 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNameMissing_xz.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughColumns_16m.html | 12 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiNotEnoughRows_1b0.html | 14 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyColumns_cx.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_va.html | 11 kB | 12 Nov 2025, 1:12:59 PM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_9f.html | 12 kB | 12 Nov 2025, 1:12:59 PM | |
| SequenceAnnotationReport.html | 631 kB | 12 Nov 2025, 1:12:57 PM | |
| SequenceAnnotationReport.js | 41 kB | 12 Nov 2025, 1:12:57 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_179.html | 20 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest_testAppendFeature_colouredByAttribute_132.html | 30 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_3r.html | 19 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_mg.html | 17 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_jg.html | 21 kB | 12 Nov 2025, 1:13:01 PM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_1a7.html | 15 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest_testAppendFeature_virtualFeature_ji.html | 25 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScoreStatusAttribute_tw.html | 15 kB | 12 Nov 2025, 1:13:01 PM | |
| SequenceAnnotationReportTest_testAppendFeature_withScore_xw.html | 25 kB | 12 Nov 2025, 1:13:00 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_rx.html | 19 kB | 12 Nov 2025, 1:13:01 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_sl.html | 36 kB | 12 Nov 2025, 1:13:01 PM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_13z.html | 31 kB | 12 Nov 2025, 1:13:01 PM | |
| SimpleBlastFile.html | 152 kB | 12 Nov 2025, 1:12:58 PM | |
| SimpleBlastFile.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| StockholmFile.html | 675 kB | 12 Nov 2025, 1:12:58 PM | |
| StockholmFile.js | 61 kB | 12 Nov 2025, 1:12:58 PM | |
| StockholmFileTest.html | 515 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest.js | 20 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_mh.html | 73 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_dbrefOutput_pp.html | 59 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_descriptionLineOutput_16j.html | 56 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_detectWussBrackets_zv.html | 13 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_na.html | 67 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_pfamFileDataExtraction_s0.html | 66 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_pfamFileIO_cn.html | 74 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_rfamFileIO_sk.html | 55 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_54.html | 50 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_68.html | 46 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_z3.html | 27 kB | 12 Nov 2025, 1:12:59 PM | |
| StockholmFileTest_testAnnotationEquivalence_ew.html | 13 kB | 12 Nov 2025, 1:12:59 PM | |
| StructureFile.html | 448 kB | 12 Nov 2025, 1:12:58 PM | |
| StructureFile.js | 97 kB | 12 Nov 2025, 1:12:58 PM | |
| TCoffeeScoreFile.html | 362 kB | 12 Nov 2025, 1:12:57 PM | |
| TCoffeeScoreFile.js | 15 kB | 12 Nov 2025, 1:12:57 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 12 Nov 2025, 1:13:01 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 12 Nov 2025, 1:13:01 PM | |
| TCoffeeScoreFileTest_testGetAsArray_e0.html | 11 kB | 12 Nov 2025, 1:13:02 PM | |
| TCoffeeScoreFileTest_testGetAsList_12n.html | 11 kB | 12 Nov 2025, 1:13:02 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_sm.html | 11 kB | 12 Nov 2025, 1:13:02 PM | |
| TCoffeeScoreFileTest_testHeightAndWidth_pi.html | 11 kB | 12 Nov 2025, 1:13:02 PM | |
| TCoffeeScoreFileTest_testParse_15d.html | 11 kB | 12 Nov 2025, 1:13:02 PM | |
| TCoffeeScoreFileTest_testReadBlock_ha.html | 10 kB | 12 Nov 2025, 1:13:02 PM | |
| TCoffeeScoreFileTest_testReadHeader_17i.html | 12 kB | 12 Nov 2025, 1:13:02 PM | |
| TCoffeeScoreFileTest_testWrongFile_ns.html | 10 kB | 12 Nov 2025, 1:13:02 PM | |
| VamsasAppDatastore.html | 1.26 MB | 12 Nov 2025, 1:12:58 PM | |
| VamsasAppDatastore.js | 13 kB | 12 Nov 2025, 1:12:58 PM | |
| WSWUBlastClient.html | 177 kB | 12 Nov 2025, 1:12:58 PM | |
| WSWUBlastClient.js | 2 kB | 12 Nov 2025, 1:12:58 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 12 Nov 2025, 1:13:02 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 12 Nov 2025, 1:13:02 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_2n.html | 115 kB | 12 Nov 2025, 1:13:02 PM | |
| pkg-summary.html | 85 kB | 12 Nov 2025, 1:13:02 PM | |
| quick-wins.html | 31 kB | 12 Nov 2025, 1:13:02 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 12 Nov 2025, 1:12:44 PM | |
| test-AnnotationExporterTest.html | 9 kB | 12 Nov 2025, 1:12:44 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 12 Nov 2025, 1:12:44 PM | |
| test-BackupFilesTest.html | 11 kB | 12 Nov 2025, 1:12:44 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 12 Nov 2025, 1:12:44 PM | |
| test-ClustalFileTest.html | 9 kB | 12 Nov 2025, 1:12:44 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 12 Nov 2025, 1:12:44 PM | |
| test-EmblFlatFileTest.html | 11 kB | 12 Nov 2025, 1:12:44 PM | |
| test-FeaturesFileTest.html | 15 kB | 12 Nov 2025, 1:12:44 PM | |
| test-FileFormatsTest.html | 12 kB | 12 Nov 2025, 1:12:44 PM | |
| test-FileIOTester.html | 12 kB | 12 Nov 2025, 1:12:44 PM | |
| test-FileLoaderTest.html | 8 kB | 12 Nov 2025, 1:12:44 PM | |
| test-FormatAdapterTest.html | 13 kB | 12 Nov 2025, 1:12:44 PM | |
| test-GenBankFileTest.html | 9 kB | 12 Nov 2025, 1:12:44 PM | |
| test-HtmlFileTest.html | 8 kB | 12 Nov 2025, 1:12:44 PM | |
| test-IdentifyFileTest.html | 19 kB | 12 Nov 2025, 1:12:44 PM | |
| test-JSONFileTest.html | 13 kB | 12 Nov 2025, 1:12:44 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 12 Nov 2025, 1:12:44 PM | |
| test-JalviewFileChooserTest.html | 21 kB | 12 Nov 2025, 1:12:44 PM | |
| test-JalviewFileViewTest.html | 10 kB | 12 Nov 2025, 1:12:44 PM | |
| test-NewickFileTests.html | 10 kB | 12 Nov 2025, 1:12:44 PM | |
| test-PfamFormatInputTest.html | 9 kB | 12 Nov 2025, 1:12:44 PM | |
| test-PhylipFileTests.html | 10 kB | 12 Nov 2025, 1:12:44 PM | |
| test-RNAMLfileTest.html | 9 kB | 12 Nov 2025, 1:12:44 PM | |
| test-ScoreMatrixFileTest.html | 19 kB | 12 Nov 2025, 1:12:44 PM | |
| test-SequenceAnnotationReportTest.html | 15 kB | 12 Nov 2025, 1:12:44 PM | |
| test-StockholmFileTest.html | 14 kB | 12 Nov 2025, 1:12:44 PM | |
| test-TCoffeeScoreFileTest.html | 12 kB | 12 Nov 2025, 1:12:44 PM | |
| test-WindowsFileLoadAndSaveTest.html | 9 kB | 12 Nov 2025, 1:12:44 PM | |
| test-pkg-summary.html | 33 kB | 12 Nov 2025, 1:12:44 PM | |
| testsrc-pkg-summary.html | 46 kB | 12 Nov 2025, 1:13:02 PM | |
| top-risks.html | 32 kB | 12 Nov 2025, 1:13:02 PM |