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Build files
Jalview Builds - Gradle Develop Build - patch-JAL-4626_alphafoldVersionTracker - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
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cache | 12 Nov 2025, 9:11:14 AM | |
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exceptions | 12 Nov 2025, 9:11:00 AM | |
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|
gff | 12 Nov 2025, 9:11:13 AM | |
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packed | 12 Nov 2025, 9:11:33 AM | |
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vamsas | 12 Nov 2025, 9:10:53 AM | |
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vcf | 12 Nov 2025, 9:11:13 AM | |
| AMSAFile.html | 80 kB | 12 Nov 2025, 9:10:54 AM | |
| AMSAFile.js | 1 kB | 12 Nov 2025, 9:10:54 AM | |
| AlignFile.html | 706 kB | 12 Nov 2025, 9:10:55 AM | |
| AlignFile.js | 222 kB | 12 Nov 2025, 9:10:55 AM | |
| AlignmentFileReaderI.html | 36 kB | 12 Nov 2025, 9:10:54 AM | |
| AlignmentFileReaderI.js | 0.6 kB | 12 Nov 2025, 9:10:54 AM | |
| AlignmentFileWriterI.html | 34 kB | 12 Nov 2025, 9:10:55 AM | |
| AlignmentFileWriterI.js | 0.6 kB | 12 Nov 2025, 9:10:55 AM | |
| AlignmentProperties.html | 94 kB | 12 Nov 2025, 9:10:54 AM | |
| AlignmentProperties.js | 1 kB | 12 Nov 2025, 9:10:54 AM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_gm.html | 24 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_rg.html | 18 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_14s.html | 15 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_14i.html | 162 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotationExporterTest.html | 59 kB | 12 Nov 2025, 9:10:57 AM | |
| AnnotationExporterTest.js | 1 kB | 12 Nov 2025, 9:10:57 AM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_hg.html | 110 kB | 12 Nov 2025, 9:10:57 AM | |
| AnnotationFile.html | 1.01 MB | 12 Nov 2025, 9:10:54 AM | |
| AnnotationFile.js | 59 kB | 12 Nov 2025, 9:10:54 AM | |
| AnnotationFileIOTest.html | 241 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotationFileIOTest.js | 5 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_b.html | 40 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_h.html | 95 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotationFileIOTest_testCalcIdRestore_pf.html | 111 kB | 12 Nov 2025, 9:10:58 AM | |
| AnnotationFileIOTest_testProviderRestore_xk.html | 103 kB | 12 Nov 2025, 9:10:58 AM | |
| AppletFormatAdapter.html | 680 kB | 12 Nov 2025, 9:10:54 AM | |
| AppletFormatAdapter.js | 129 kB | 12 Nov 2025, 9:10:54 AM | |
| BLCFile.html | 153 kB | 12 Nov 2025, 9:10:55 AM | |
| BLCFile.js | 3 kB | 12 Nov 2025, 9:10:55 AM | |
| BackupFilenameFilter.html | 68 kB | 12 Nov 2025, 9:10:54 AM | |
| BackupFilenameFilter.js | 3 kB | 12 Nov 2025, 9:10:54 AM | |
| BackupFilenameParts.html | 129 kB | 12 Nov 2025, 9:10:54 AM | |
| BackupFilenameParts.js | 7 kB | 12 Nov 2025, 9:10:54 AM | |
| BackupFiles.html | 597 kB | 12 Nov 2025, 9:10:54 AM | |
| BackupFiles.js | 57 kB | 12 Nov 2025, 9:10:54 AM | |
| BackupFilesPresetEntry.html | 155 kB | 12 Nov 2025, 9:10:54 AM | |
| BackupFilesPresetEntry.js | 15 kB | 12 Nov 2025, 9:10:54 AM | |
| BackupFilesTest.html | 296 kB | 12 Nov 2025, 9:10:58 AM | |
| BackupFilesTest.js | 10 kB | 12 Nov 2025, 9:10:58 AM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_s7.html | 93 kB | 12 Nov 2025, 9:10:58 AM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_10o.html | 110 kB | 12 Nov 2025, 9:10:58 AM | |
| BackupFilesTest_backupsEnabledRollMaxTest_vb.html | 110 kB | 12 Nov 2025, 9:10:58 AM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_yu.html | 109 kB | 12 Nov 2025, 9:10:58 AM | |
| BackupFilesTest_noBackupsEnabledTest_55.html | 93 kB | 12 Nov 2025, 9:10:58 AM | |
| BioJsHTMLOutput.html | 281 kB | 12 Nov 2025, 9:10:55 AM | |
| BioJsHTMLOutput.js | 73 kB | 12 Nov 2025, 9:10:55 AM | |
| BioJsHTMLOutputTest.html | 107 kB | 12 Nov 2025, 9:10:56 AM | |
| BioJsHTMLOutputTest.js | 2 kB | 12 Nov 2025, 9:10:56 AM | |
| BioJsHTMLOutputTest_expectedNullPointerException_s5.html | 8 kB | 12 Nov 2025, 9:10:56 AM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_k7.html | 8 kB | 12 Nov 2025, 9:10:56 AM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_n7.html | 23 kB | 12 Nov 2025, 9:10:56 AM | |
| ClustalFile.html | 158 kB | 12 Nov 2025, 9:10:55 AM | |
| ClustalFile.js | 6 kB | 12 Nov 2025, 9:10:55 AM | |
| ClustalFileTest.html | 65 kB | 12 Nov 2025, 9:10:58 AM | |
| ClustalFileTest.js | 1 kB | 12 Nov 2025, 9:10:58 AM | |
| ClustalFileTest_testParse_noNumbering_1o.html | 14 kB | 12 Nov 2025, 9:10:58 AM | |
| ClustalFileTest_testParse_withNumbering_185.html | 14 kB | 12 Nov 2025, 9:10:58 AM | |
| CrossRef2xmlTests.html | 327 kB | 12 Nov 2025, 9:10:55 AM | |
| CrossRef2xmlTests.js | 4 kB | 12 Nov 2025, 9:10:55 AM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_9d.html | 174 kB | 12 Nov 2025, 9:10:55 AM | |
| DBRefFile.html | 43 kB | 12 Nov 2025, 9:10:55 AM | |
| DBRefFile.js | 0.6 kB | 12 Nov 2025, 9:10:55 AM | |
| DataSourceType.html | 269 kB | 12 Nov 2025, 9:10:54 AM | |
| DataSourceType.js | 25 kB | 12 Nov 2025, 9:10:54 AM | |
| EMBLLikeFlatFile.html | 429 kB | 12 Nov 2025, 9:10:54 AM | |
| EMBLLikeFlatFile.js | 16 kB | 12 Nov 2025, 9:10:54 AM | |
| EmblFlatFile.html | 134 kB | 12 Nov 2025, 9:10:54 AM | |
| EmblFlatFile.js | 4 kB | 12 Nov 2025, 9:10:54 AM | |
| EmblFlatFileTest.html | 229 kB | 12 Nov 2025, 9:10:57 AM | |
| EmblFlatFileTest.js | 5 kB | 12 Nov 2025, 9:10:57 AM | |
| EmblFlatFileTest_testAdjustForProteinLength_p1.html | 12 kB | 12 Nov 2025, 9:10:58 AM | |
| EmblFlatFileTest_testParseToRNA_6s.html | 23 kB | 12 Nov 2025, 9:10:57 AM | |
| EmblFlatFileTest_testParse_codonStartNot1_16c.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| EmblFlatFileTest_testParse_d0.html | 23 kB | 12 Nov 2025, 9:10:57 AM | |
| EmblFlatFileTest_testParse_noUniprotXref_v.html | 22 kB | 12 Nov 2025, 9:10:58 AM | |
| EmblFlatFileTest_testRemoveQuotes_197.html | 12 kB | 12 Nov 2025, 9:10:57 AM | |
| FastaFile.html | 427 kB | 12 Nov 2025, 9:10:55 AM | |
| FastaFile.js | 111 kB | 12 Nov 2025, 9:10:55 AM | |
| FeaturesFile.html | 765 kB | 12 Nov 2025, 9:10:54 AM | |
| FeaturesFile.js | 27 kB | 12 Nov 2025, 9:10:54 AM | |
| FeaturesFileTest.html | 522 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest.js | 13 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_readGff3File_150.html | 37 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_simpleGff3FileClass_147.html | 36 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_simpleGff3FileLoader_s3.html | 126 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_19v.html | 36 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testOutputFeatureFilters_tx.html | 14 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testParseFilters_1bl.html | 18 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testParse_14g.html | 111 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_pc.html | 108 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testParse_mixedJalviewGff_9q.html | 115 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testParse_pureGff3_1v.html | 98 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testPrintGffFormat_19p.html | 103 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_187.html | 109 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testPrintJalviewFormat_cu.html | 109 kB | 12 Nov 2025, 9:10:57 AM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_b4.html | 109 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormat.html | 791 kB | 12 Nov 2025, 9:10:55 AM | |
| FileFormat.js | 79 kB | 12 Nov 2025, 9:10:55 AM | |
| FileFormatException.html | 58 kB | 12 Nov 2025, 9:10:55 AM | |
| FileFormatException.js | 2 kB | 12 Nov 2025, 9:10:55 AM | |
| FileFormatI.html | 47 kB | 12 Nov 2025, 9:10:54 AM | |
| FileFormatI.js | 0.7 kB | 12 Nov 2025, 9:10:54 AM | |
| FileFormats.html | 442 kB | 12 Nov 2025, 9:10:54 AM | |
| FileFormats.js | 69 kB | 12 Nov 2025, 9:10:54 AM | |
| FileFormatsTest.html | 137 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormatsTest.js | 3 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormatsTest_testDeregisterFileFormat_4p.html | 9 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormatsTest_testForName_jn.html | 9 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormatsTest_testGetFormats_1c8.html | 9 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormatsTest_testGetReadableFormats_h1.html | 9 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormatsTest_testGetWritableFormats_16w.html | 9 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormatsTest_testIsIdentifiable_14.html | 9 kB | 12 Nov 2025, 9:10:57 AM | |
| FileFormatsTest_testRegisterFileFormat_jc.html | 9 kB | 12 Nov 2025, 9:10:57 AM | |
| FileIOTester.html | 130 kB | 12 Nov 2025, 9:10:58 AM | |
| FileIOTester.js | 3 kB | 12 Nov 2025, 9:10:58 AM | |
| FileIOTester_testGzipIo_qs.html | 12 kB | 12 Nov 2025, 9:10:58 AM | |
| FileIOTester_testGziplocalFileIO_ko.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| FileIOTester_testIsGzipInputStream_g0.html | 12 kB | 12 Nov 2025, 9:10:58 AM | |
| FileIOTester_testNonGzipURLIO_122.html | 12 kB | 12 Nov 2025, 9:10:58 AM | |
| FileIOTester_testNonGziplocalFileIO_pd.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| FileIOTester_testStarsInFasta1_y5.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| FileIOTester_testStarsInFasta2_ao.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| FileLoader.html | 601 kB | 12 Nov 2025, 9:10:55 AM | |
| FileLoader.js | 250 kB | 12 Nov 2025, 9:10:55 AM | |
| FileLoaderTest.html | 37 kB | 12 Nov 2025, 9:10:58 AM | |
| FileLoaderTest.js | 0.6 kB | 12 Nov 2025, 9:10:58 AM | |
| FileParse.html | 924 kB | 12 Nov 2025, 9:10:54 AM | |
| FileParse.js | 337 kB | 12 Nov 2025, 9:10:54 AM | |
| FormatAdapter.html | 458 kB | 12 Nov 2025, 9:10:54 AM | |
| FormatAdapter.js | 56 kB | 12 Nov 2025, 9:10:54 AM | |
| FormatAdapterTest.html | 112 kB | 12 Nov 2025, 9:10:56 AM | |
| FormatAdapterTest.js | 5 kB | 12 Nov 2025, 9:10:56 AM | |
| FormatAdapterTest_testRoundTrip_15i.html | 43 kB | 12 Nov 2025, 9:10:56 AM | |
| FormatAdapterTest_testRoundTrip_16q.html | 22 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_1cv.html | 21 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_4m.html | 23 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_8a.html | 31 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_8q.html | 21 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_b8.html | 22 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_d6.html | 21 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_fj.html | 22 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_ho.html | 21 kB | 12 Nov 2025, 9:10:57 AM | |
| FormatAdapterTest_testRoundTrip_vg.html | 23 kB | 12 Nov 2025, 9:10:57 AM | |
| GenBankFile.html | 121 kB | 12 Nov 2025, 9:10:54 AM | |
| GenBankFile.js | 2 kB | 12 Nov 2025, 9:10:54 AM | |
| GenBankFileTest.html | 133 kB | 12 Nov 2025, 9:10:56 AM | |
| GenBankFileTest.js | 3 kB | 12 Nov 2025, 9:10:56 AM | |
| GenBankFileTest_testParse_1af.html | 19 kB | 12 Nov 2025, 9:10:56 AM | |
| HTMLOutput.html | 197 kB | 12 Nov 2025, 9:10:55 AM | |
| HTMLOutput.js | 2 kB | 12 Nov 2025, 9:10:55 AM | |
| HtmlFile.html | 132 kB | 12 Nov 2025, 9:10:55 AM | |
| HtmlFile.js | 2 kB | 12 Nov 2025, 9:10:55 AM | |
| HtmlFileTest.html | 39 kB | 12 Nov 2025, 9:10:58 AM | |
| HtmlFileTest.js | 0.6 kB | 12 Nov 2025, 9:10:58 AM | |
| HtmlSvgOutput.html | 173 kB | 12 Nov 2025, 9:10:54 AM | |
| HtmlSvgOutput.js | 2 kB | 12 Nov 2025, 9:10:54 AM | |
| IdentifyFile.html | 583 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFile.js | 231 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest.html | 149 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest.js | 5 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_103.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_10i.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_111.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_112.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_11e.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_138.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_1al.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_1di.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_1e.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_9i.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_b6.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_bo.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_d1.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_dn.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_featureFile_an.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_hc.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_nv.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_p6.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_p9.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_q6.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_vu.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testIdentify_yh.html | 11 kB | 12 Nov 2025, 9:10:55 AM | |
| IdentifyFileTest_testLooksLikeFeatureData_j.html | 8 kB | 12 Nov 2025, 9:10:55 AM | |
| InputStreamParser.html | 44 kB | 12 Nov 2025, 9:10:55 AM | |
| InputStreamParser.js | 0.6 kB | 12 Nov 2025, 9:10:55 AM | |
| IntKeyStringValueEntry.html | 44 kB | 12 Nov 2025, 9:10:55 AM | |
| IntKeyStringValueEntry.js | 0.7 kB | 12 Nov 2025, 9:10:55 AM | |
| JPredFile.html | 220 kB | 12 Nov 2025, 9:10:55 AM | |
| JPredFile.js | 2 kB | 12 Nov 2025, 9:10:55 AM | |
| JSONFile.html | 508 kB | 12 Nov 2025, 9:10:54 AM | |
| JSONFile.js | 14 kB | 12 Nov 2025, 9:10:54 AM | |
| JSONFileTest.html | 364 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest.js | 6 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_colorSchemeTest_mw.html | 8 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_hiddenColsTest_1bs.html | 10 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_hiddenSeqsTest_tc.html | 8 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_isShowSeqFeaturesSet_g9.html | 8 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_roundTripTest_uq.html | 7 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_testAnnotationParsed_bj.html | 8 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_19q.html | 118 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_testGrpParsed_1bx.html | 10 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_testGrpParsed_colourNone_9h.html | 113 kB | 12 Nov 2025, 9:10:56 AM | |
| JSONFileTest_testSeqParsed_102.html | 11 kB | 12 Nov 2025, 9:10:56 AM | |
| Jalview2xmlBase.html | 78 kB | 12 Nov 2025, 9:10:56 AM | |
| Jalview2xmlBase.js | 1 kB | 12 Nov 2025, 9:10:56 AM | |
| JalviewExportPropertiesTests.html | 71 kB | 12 Nov 2025, 9:10:56 AM | |
| JalviewExportPropertiesTests.js | 1 kB | 12 Nov 2025, 9:10:56 AM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_15u.html | 137 kB | 12 Nov 2025, 9:10:56 AM | |
| JalviewFileChooser.html | 646 kB | 12 Nov 2025, 9:10:54 AM | |
| JalviewFileChooser.js | 139 kB | 12 Nov 2025, 9:10:54 AM | |
| JalviewFileChooserTest.html | 113 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest.js | 7 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_15r.html | 16 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_15w.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_173.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_19l.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1b.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1bm.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1d.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1y.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_37.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_6.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_bx.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_db.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_gk.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_gt.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_hm.html | 14 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_in.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ld.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_n1.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_o0.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_sx.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_tp.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_wd.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_wl.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_xu.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| JalviewFileFilter.html | 246 kB | 12 Nov 2025, 9:10:55 AM | |
| JalviewFileFilter.js | 64 kB | 12 Nov 2025, 9:10:55 AM | |
| JalviewFileView.html | 115 kB | 12 Nov 2025, 9:10:54 AM | |
| JalviewFileView.js | 2 kB | 12 Nov 2025, 9:10:54 AM | |
| JalviewFileViewTest.html | 90 kB | 12 Nov 2025, 9:10:56 AM | |
| JalviewFileViewTest.js | 2 kB | 12 Nov 2025, 9:10:56 AM | |
| JalviewFileViewTest_testGetExtension_95.html | 8 kB | 12 Nov 2025, 9:10:56 AM | |
| JalviewFileViewTest_testGetImageIcon_1br.html | 9 kB | 12 Nov 2025, 9:10:56 AM | |
| JalviewFileViewTest_testGetTypeDescription_ai.html | 10 kB | 12 Nov 2025, 9:10:56 AM | |
| JnetAnnotationMaker.html | 126 kB | 12 Nov 2025, 9:10:54 AM | |
| JnetAnnotationMaker.js | 1 kB | 12 Nov 2025, 9:10:54 AM | |
| MSFfile.html | 212 kB | 12 Nov 2025, 9:10:55 AM | |
| MSFfile.js | 5 kB | 12 Nov 2025, 9:10:55 AM | |
| ModellerDescription.html | 236 kB | 12 Nov 2025, 9:10:54 AM | |
| ModellerDescription.js | 3 kB | 12 Nov 2025, 9:10:54 AM | |
| NewickFile.html | 529 kB | 12 Nov 2025, 9:10:55 AM | |
| NewickFile.js | 39 kB | 12 Nov 2025, 9:10:55 AM | |
| NewickFileTests.html | 121 kB | 12 Nov 2025, 9:10:57 AM | |
| NewickFileTests.js | 3 kB | 12 Nov 2025, 9:10:57 AM | |
| NewickFileTests_testTreeIO_13y.html | 34 kB | 12 Nov 2025, 9:10:57 AM | |
| NewickFileTests_testTreeIO_xd.html | 33 kB | 12 Nov 2025, 9:10:57 AM | |
| NewickFileTests_testTreeIO_yt.html | 35 kB | 12 Nov 2025, 9:10:57 AM | |
| PContactPredictionFile.html | 101 kB | 12 Nov 2025, 9:10:54 AM | |
| PContactPredictionFile.js | 1 kB | 12 Nov 2025, 9:10:54 AM | |
| PDBFeatureSettings.html | 121 kB | 12 Nov 2025, 9:10:54 AM | |
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| PIRFile.html | 120 kB | 12 Nov 2025, 9:10:54 AM | |
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| PfamFile.html | 131 kB | 12 Nov 2025, 9:10:54 AM | |
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| PfamFormatInputTest.html | 56 kB | 12 Nov 2025, 9:10:58 AM | |
| PfamFormatInputTest.js | 1.0 kB | 12 Nov 2025, 9:10:58 AM | |
| PfamFormatInputTest_testPfamFormatNoLimits_20.html | 21 kB | 12 Nov 2025, 9:10:58 AM | |
| PfamFormatInputTest_testPfamFormatValidLimits_l8.html | 21 kB | 12 Nov 2025, 9:10:58 AM | |
| PhylipFile.html | 176 kB | 12 Nov 2025, 9:10:54 AM | |
| PhylipFile.js | 6 kB | 12 Nov 2025, 9:10:54 AM | |
| PhylipFileTests.html | 128 kB | 12 Nov 2025, 9:10:56 AM | |
| PhylipFileTests.js | 3 kB | 12 Nov 2025, 9:10:56 AM | |
| PhylipFileTests_testInterleavedDataExtraction_gc.html | 19 kB | 12 Nov 2025, 9:10:56 AM | |
| PhylipFileTests_testInterleavedIO_82.html | 20 kB | 12 Nov 2025, 9:10:56 AM | |
| PhylipFileTests_testSequentialDataExtraction_10b.html | 19 kB | 12 Nov 2025, 9:10:56 AM | |
| PhylipFileTests_testSequentialIO_9p.html | 20 kB | 12 Nov 2025, 9:10:56 AM | |
| PileUpfile.html | 112 kB | 12 Nov 2025, 9:10:54 AM | |
| PileUpfile.js | 2 kB | 12 Nov 2025, 9:10:54 AM | |
| RNAMLfileTest.html | 66 kB | 12 Nov 2025, 9:10:58 AM | |
| RNAMLfileTest.js | 1 kB | 12 Nov 2025, 9:10:58 AM | |
| RNAMLfileTest_testRnamlSeqImport_zr.html | 30 kB | 12 Nov 2025, 9:10:58 AM | |
| RNAMLfileTest_testRnamlToStockholmIO_z3.html | 50 kB | 12 Nov 2025, 9:10:58 AM | |
| RnamlFile.html | 145 kB | 12 Nov 2025, 9:10:54 AM | |
| RnamlFile.js | 3 kB | 12 Nov 2025, 9:10:54 AM | |
| ScoreMatrixFile.html | 266 kB | 12 Nov 2025, 9:10:55 AM | |
| ScoreMatrixFile.js | 24 kB | 12 Nov 2025, 9:10:55 AM | |
| ScoreMatrixFileTest.html | 334 kB | 12 Nov 2025, 9:10:56 AM | |
| ScoreMatrixFileTest.js | 7 kB | 12 Nov 2025, 9:10:56 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaIndexBlosum80_t.html | 11 kB | 12 Nov 2025, 9:10:56 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_6u.html | 11 kB | 12 Nov 2025, 9:10:56 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_extraDataLines_ez.html | 11 kB | 12 Nov 2025, 9:10:56 AM | |
| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_te.html | 14 kB | 12 Nov 2025, 9:10:56 AM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_16e.html | 12 kB | 12 Nov 2025, 9:10:56 AM | |
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| ScoreMatrixFileTest_testParseMatrix_ncbiTooManyRows_up.html | 11 kB | 12 Nov 2025, 9:10:56 AM | |
| ScoreMatrixFileTest_testParse_ncbiFormat_17t.html | 12 kB | 12 Nov 2025, 9:10:56 AM | |
| SequenceAnnotationReport.html | 631 kB | 12 Nov 2025, 9:10:54 AM | |
| SequenceAnnotationReport.js | 41 kB | 12 Nov 2025, 9:10:54 AM | |
| SequenceAnnotationReportTest.html | 309 kB | 12 Nov 2025, 9:10:57 AM | |
| SequenceAnnotationReportTest.js | 7 kB | 12 Nov 2025, 9:10:57 AM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_fi.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
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| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_zg.html | 9 kB | 12 Nov 2025, 9:10:57 AM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_7b.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
| SequenceAnnotationReportTest_testAppendFeature_status_k9.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| SequenceAnnotationReportTest_testAppendFeature_stripHtml_9t.html | 10 kB | 12 Nov 2025, 9:10:57 AM | |
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| SequenceAnnotationReportTest_testAppendFeature_withScore_pm.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_5q.html | 11 kB | 12 Nov 2025, 9:10:57 AM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_v9.html | 18 kB | 12 Nov 2025, 9:10:57 AM | |
| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_yj.html | 14 kB | 12 Nov 2025, 9:10:57 AM | |
| SimpleBlastFile.html | 152 kB | 12 Nov 2025, 9:10:54 AM | |
| SimpleBlastFile.js | 2 kB | 12 Nov 2025, 9:10:54 AM | |
| StockholmFile.html | 675 kB | 12 Nov 2025, 9:10:54 AM | |
| StockholmFile.js | 60 kB | 12 Nov 2025, 9:10:54 AM | |
| StockholmFileTest.html | 515 kB | 12 Nov 2025, 9:10:55 AM | |
| StockholmFileTest.js | 20 kB | 12 Nov 2025, 9:10:55 AM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_ke.html | 49 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_dbrefOutput_i1.html | 45 kB | 12 Nov 2025, 9:10:55 AM | |
| StockholmFileTest_descriptionLineOutput_1cm.html | 39 kB | 12 Nov 2025, 9:10:55 AM | |
| StockholmFileTest_detectWussBrackets_46.html | 7 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_tr.html | 63 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_pfamFileDataExtraction_q2.html | 55 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_pfamFileIO_cb.html | 55 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_rfamFileIO_12m.html | 55 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_secondaryStructureForRNASequence_vk.html | 49 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_mp.html | 46 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_stockholmFileRnaSSSpaceChars_xh.html | 27 kB | 12 Nov 2025, 9:10:56 AM | |
| StockholmFileTest_testAnnotationEquivalence_14z.html | 12 kB | 12 Nov 2025, 9:10:56 AM | |
| StructureFile.html | 450 kB | 12 Nov 2025, 9:10:54 AM | |
| StructureFile.js | 98 kB | 12 Nov 2025, 9:10:54 AM | |
| TCoffeeScoreFile.html | 362 kB | 12 Nov 2025, 9:10:54 AM | |
| TCoffeeScoreFile.js | 14 kB | 12 Nov 2025, 9:10:54 AM | |
| TCoffeeScoreFileTest.html | 171 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest.js | 4 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest_testGetAsArray_3a.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest_testGetAsList_jm.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_r.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest_testHeightAndWidth_8j.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest_testParse_fs.html | 11 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest_testReadBlock_us.html | 10 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest_testReadHeader_11f.html | 12 kB | 12 Nov 2025, 9:10:58 AM | |
| TCoffeeScoreFileTest_testWrongFile_v1.html | 10 kB | 12 Nov 2025, 9:10:58 AM | |
| VamsasAppDatastore.html | 1.26 MB | 12 Nov 2025, 9:10:54 AM | |
| VamsasAppDatastore.js | 13 kB | 12 Nov 2025, 9:10:54 AM | |
| WSWUBlastClient.html | 177 kB | 12 Nov 2025, 9:10:54 AM | |
| WSWUBlastClient.js | 2 kB | 12 Nov 2025, 9:10:54 AM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 12 Nov 2025, 9:10:58 AM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 12 Nov 2025, 9:10:58 AM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_ab.html | 113 kB | 12 Nov 2025, 9:10:58 AM | |
| pkg-summary.html | 85 kB | 12 Nov 2025, 9:10:58 AM | |
| quick-wins.html | 31 kB | 12 Nov 2025, 9:10:58 AM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 12 Nov 2025, 9:10:42 AM | |
| test-AnnotationExporterTest.html | 9 kB | 12 Nov 2025, 9:10:42 AM | |
| test-AnnotationFileIOTest.html | 10 kB | 12 Nov 2025, 9:10:42 AM | |
| test-BackupFilesTest.html | 11 kB | 12 Nov 2025, 9:10:42 AM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 12 Nov 2025, 9:10:42 AM | |
| test-ClustalFileTest.html | 9 kB | 12 Nov 2025, 9:10:42 AM | |
| test-CrossRef2xmlTests.html | 9 kB | 12 Nov 2025, 9:10:41 AM | |
| test-EmblFlatFileTest.html | 11 kB | 12 Nov 2025, 9:10:42 AM | |
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| test-FileFormatsTest.html | 12 kB | 12 Nov 2025, 9:10:42 AM | |
| test-FileIOTester.html | 12 kB | 12 Nov 2025, 9:10:42 AM | |
| test-FileLoaderTest.html | 8 kB | 12 Nov 2025, 9:10:42 AM | |
| test-FormatAdapterTest.html | 13 kB | 12 Nov 2025, 9:10:42 AM | |
| test-GenBankFileTest.html | 9 kB | 12 Nov 2025, 9:10:42 AM | |
| test-HtmlFileTest.html | 8 kB | 12 Nov 2025, 9:10:42 AM | |
| test-IdentifyFileTest.html | 19 kB | 12 Nov 2025, 9:10:41 AM | |
| test-JSONFileTest.html | 13 kB | 12 Nov 2025, 9:10:42 AM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 12 Nov 2025, 9:10:42 AM | |
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| test-JalviewFileViewTest.html | 10 kB | 12 Nov 2025, 9:10:42 AM | |
| test-NewickFileTests.html | 10 kB | 12 Nov 2025, 9:10:42 AM | |
| test-PfamFormatInputTest.html | 9 kB | 12 Nov 2025, 9:10:42 AM | |
| test-PhylipFileTests.html | 10 kB | 12 Nov 2025, 9:10:42 AM | |
| test-RNAMLfileTest.html | 9 kB | 12 Nov 2025, 9:10:42 AM | |
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| test-SequenceAnnotationReportTest.html | 15 kB | 12 Nov 2025, 9:10:42 AM | |
| test-StockholmFileTest.html | 14 kB | 12 Nov 2025, 9:10:42 AM | |
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| test-WindowsFileLoadAndSaveTest.html | 9 kB | 12 Nov 2025, 9:10:42 AM | |
| test-pkg-summary.html | 33 kB | 12 Nov 2025, 9:10:42 AM | |
| testsrc-pkg-summary.html | 46 kB | 12 Nov 2025, 9:10:58 AM | |
| top-risks.html | 32 kB | 12 Nov 2025, 9:10:58 AM |