Build files

Jalview Builds - Gradle Develop Build - improvement-JAL-4620_faster_sim_matrices - Clover and Tests / src / jalview / analysis

	File	Size	Date
	scoremodels		04 Nov 2025, 11:21:12 AM
	AAFrequency.java	30 kB	04 Nov 2025, 11:21:12 AM
	AlignSeq.java	37 kB	04 Nov 2025, 11:21:12 AM
	AlignmentAnnotationUtils.java	16 kB	04 Nov 2025, 11:21:12 AM
	AlignmentSorter.java	24 kB	04 Nov 2025, 11:21:12 AM
	AlignmentUtils.java	99 kB	04 Nov 2025, 11:21:12 AM
	AnnotationSorter.java	16 kB	04 Nov 2025, 11:21:12 AM
	AverageDistanceEngine.java	9 kB	04 Nov 2025, 11:21:12 AM
	AverageDistanceTree.java	3 kB	04 Nov 2025, 11:21:12 AM
	CodingUtils.java	4 kB	04 Nov 2025, 11:21:12 AM
	CodonComparator.java	3 kB	04 Nov 2025, 11:21:12 AM
	Connectivity.java	4 kB	04 Nov 2025, 11:21:12 AM
	ConnectivityException.java	2 kB	04 Nov 2025, 11:21:12 AM
	Conservation.java	23 kB	04 Nov 2025, 11:21:12 AM
	CrossRef.java	37 kB	04 Nov 2025, 11:21:12 AM
	Dna.java	29 kB	04 Nov 2025, 11:21:12 AM
	Finder.java	20 kB	04 Nov 2025, 11:21:12 AM
	GeneticCodeI.java	2 kB	04 Nov 2025, 11:21:12 AM
	GeneticCodes.java	12 kB	04 Nov 2025, 11:21:12 AM
	Grouping.java	11 kB	04 Nov 2025, 11:21:12 AM
	NJTree.java	3 kB	04 Nov 2025, 11:21:12 AM
	PCA.java	6 kB	04 Nov 2025, 11:21:12 AM
	PaSiMap.java	9 kB	04 Nov 2025, 11:21:12 AM
	ParseProperties.java	5 kB	04 Nov 2025, 11:21:12 AM
	Rna.java	12 kB	04 Nov 2025, 11:21:12 AM
	SecStrConsensus.java	6 kB	04 Nov 2025, 11:21:12 AM
	SeqsetUtils.java	9 kB	04 Nov 2025, 11:21:12 AM
	SequenceIdMatcher.java	9 kB	04 Nov 2025, 11:21:12 AM
	StructureFrequency.java	13 kB	04 Nov 2025, 11:21:12 AM
	TreeBuilder.java	6 kB	04 Nov 2025, 11:21:12 AM
	TreeEngine.java	6 kB	04 Nov 2025, 11:21:12 AM
	TreeModel.java	16 kB	04 Nov 2025, 11:21:12 AM
	WUSSParseException.java	1 kB	04 Nov 2025, 11:21:12 AM
	ccAnalysis.java	29 kB	04 Nov 2025, 11:21:12 AM