Build #208

Build: #208 failed

Job: Default Job failed

Stages & jobs

  1. Default Stage

Create fasta sequence index: Test case result

The below summarizes the result of the test "Create fasta sequence index" in build 208 of Jalview Builds - jalview develop build - Jalview-BH-JAL-3026 - Default Job. View test case history
Description
Create fasta sequence index
Test class
Ant suite > Ant test > jalview.ext.htsjdk.TestHtsContigDb
Method
testCreateFastaSequenceIndex
Duration
< 1 sec
Status
Failed (Existing Failure)

Error Log

Classname: java.lang.NoSuchMethodError
Message: htsjdk.samtools.reference.ReferenceSequenceFileFactory.getFastaIndexFileName(Ljava/nio/file/Path;)Ljava/nio/file/Path;
Stacktrace:
java.lang.NoSuchMethodError: htsjdk.samtools.reference.ReferenceSequenceFileFactory.getFastaIndexFileName(Ljava/nio/file/Path;)Ljava/nio/file/Path;
	at htsjdk.samtools.reference.FastaSequenceIndexCreator.create(FastaSequenceIndexCreator.java:57)
	at jalview.ext.htsjdk.HtsContigDb.createFastaSequenceIndex(HtsContigDb.java:65)
	at jalview.ext.htsjdk.TestHtsContigDb.__CLR4_2_1fsv57j2vbn(TestHtsContigDb.java:101)
	at jalview.ext.htsjdk.TestHtsContigDb.testCreateFastaSequenceIndex(TestHtsContigDb.java:94)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85)
	at org.testng.internal.Invoker.invokeMethod(Invoker.java:648)
	at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834)
	at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142)
	at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)
	at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)
	at org.testng.TestRunner.privateRun(TestRunner.java:771)
	at org.testng.TestRunner.run(TestRunner.java:621)
	at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)
	at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)
	at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)
	at org.testng.SuiteRunner.run(SuiteRunner.java:259)
	at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
	at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)
	at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176)
	at org.testng.TestNG.runSuitesLocally(TestNG.java:1101)
	at org.testng.TestNG.run(TestNG.java:1009)
	at org.testng.TestNG.privateMain(TestNG.java:1316)
	at org.testng.TestNG.main(TestNG.java:1285)