Jalview Git

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  Ben Soares <b.soares@dundee.ac.uk> 3 days ago 3e8516c59908e9f9f791cf820321c5007bdd58ec

  JAL-4125 Fixed non-closing external viewers, also added options for default behaviour for both normal quit and forced quit

  • src/jalview/bin/Jalview.java (version 3e8516c59908e9f9f791cf820321c5007bdd58ec) (diffs)
  • src/jalview/gui/Desktop.java (version 3e8516c59908e9f9f791cf820321c5007bdd58ec) (diffs)
  • src/jalview/gui/QuitHandler.java (version 3e8516c59908e9f9f791cf820321c5007bdd58ec) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 3 days ago 559683447a76180ede214c9b44f018b5c7539987

  JAL-629 dispose of non-displaying StructureChooser, removes zombie entry in Window menu

  • src/jalview/gui/StructureChooser.java (version 559683447a76180ede214c9b44f018b5c7539987) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 3 days ago 353cb52722490edcba2c13b18836b6d37c5455de

  Merge branch 'develop' into feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries
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  Ben Soares <b.soares@dundee.ac.uk> 3 days ago 3c8d2ce11ea400d82cb79d1ac9da6423cecc2980 m

  JAL-3416 JAL-3820 FlatLaf default for everyone, including Windows. Add jalview_local.bat and .ps1 on Windows installation.

  • build.gradle (version 3c8d2ce11ea400d82cb79d1ac9da6423cecc2980) (diffs)
  • src/jalview/bin/Jalview.java (version 3c8d2ce11ea400d82cb79d1ac9da6423cecc2980) (diffs)
  • utils/install4j/install4j10_template.install4j (version 3c8d2ce11ea400d82cb79d1ac9da6423cecc2980) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 4 days ago 38b29c5c15993cfb29d53b16a524fe5fc1445a7d m

  JAL-3416 better path name

  • utils/install4j/install4j10_template.install4j (version 38b29c5c15993cfb29d53b16a524fe5fc1445a7d) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 4 days ago f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc m

  JAL-3820 JAL-3830 improvements to script launching. Icon on macOS. Fixed CLASSPATH.

  • getdown/lib/getdown-core.jar (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • getdown/lib/getdown-launcher-local.jar (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • getdown/lib/getdown-launcher.jar (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • getdown/src/getdown/core/src/main/java/jalview/bin/HiDPISetting.java (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • getdown/src/getdown/core/src/main/java/jalview/bin/MemorySetting.java (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • getdown/src/getdown/core/src/main/java/jalview/bin/ScreenInfo.java (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • getdown/src/getdown/core/src/main/java/jalview/util/ChannelProperties.java (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • getdown/src/getdown/core/src/main/java/jalview/util/LaunchUtils.java (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • getdown/src/getdown/core/src/main/java/jalview/util/StringUtils.java (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • j11lib/getdown-core.jar (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • j8lib/getdown-core.jar (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • src/jalview/bin/Launcher.java (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • utils/getdown/bin/jalview.ps1 (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • utils/getdown/bin/jalview.sh (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
  • utils/install4j/install4j10_template.install4j (version f6e495e7dace3de7fd890cb9f817a99ec5fcbbcc) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 4 days ago 4ce97aceb541e3afaed87cdc444d2f52d1ebc944 m

  JAL-3820 Create and use 'Jalview app' symblinks to java executable. Fixes grouped naming in linux taskbar, possibly macOS dock, still to check.

  • getdown/lib/FJVL_VERSION (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/lib/JVL_VERSION (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/lib/getdown-core.jar (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/lib/getdown-launcher-local.jar (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/lib/getdown-launcher.jar (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/src/getdown/ant/pom.xml (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/src/getdown/core/pom.xml (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/src/getdown/core/src/main/java/com/threerings/getdown/util/LaunchUtil.java (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/src/getdown/launcher/pom.xml (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/src/getdown/mvn_cmd (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • getdown/src/getdown/pom.xml (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • j11lib/getdown-core.jar (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • j8lib/getdown-core.jar (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • src/jalview/bin/Launcher.java (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • src/jalview/gui/Desktop.java (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
  • utils/install4j/install4j10_template.install4j (version 4ce97aceb541e3afaed87cdc444d2f52d1ebc944) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 4 days ago 0bcfbb4f5f6c7080c8e0d1d35bf00597343dc165 m

  JAL-3416 remove old flatlaf jars from j8lib

  • j8lib/flatlaf-3.0.jar (version 0bcfbb4f5f6c7080c8e0d1d35bf00597343dc165) (diffs)
  • j8lib/flatlaf-extras-3.0.jar (version 0bcfbb4f5f6c7080c8e0d1d35bf00597343dc165) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago 0361f895087bdff38d1f64ed54eee7acb0659d17 m

  JAL-3416 slightly improved colours for tabber pane tabs

  • src/jalview/bin/Jalview.java (version 0361f895087bdff38d1f64ed54eee7acb0659d17) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago 1196b471959e3ef194adc632f9fc2856b46c847f m

  JAL-3416 Updated flatlaf libraries.  Native libraries are extracted automatically by flatlaf apparently.

  • j11lib/flatlaf-3.1.1.jar (version 1196b471959e3ef194adc632f9fc2856b46c847f) (diffs)
  • j11lib/flatlaf-extras-3.1.1.jar (version 1196b471959e3ef194adc632f9fc2856b46c847f) (diffs)
  • j8lib/flatlaf-3.1.1.jar (version 1196b471959e3ef194adc632f9fc2856b46c847f) (diffs)
  • j8lib/flatlaf-extras-3.1.1.jar (version 1196b471959e3ef194adc632f9fc2856b46c847f) (diffs)