Class jalview.structure.StructureSelectionManagerTest
Tests
| Test |
Duration |
Result |
| testRegisterMapping |
0.001s |
passed |
| testRegisterMappings |
0.001s |
passed |
| testSetMapping_seqFeatures |
0.334s |
passed |
Standard output
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 109.3/308.3
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
OXIDOREDUCTASE/ELECTRON TRANSPORT 08-MAY-00 1GAQ
1GAQ
reading 690 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
690 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 3 ms
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@fd22970
Standard error
DEBUG - Constructing news reader.
Aug 13, 2020 12:06:18 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
DEBUG - Waiting around for old discovery thread to finish.
DEBUG - Aborting 1 JABAWS discovery threads.
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@4099e13, jalview.ws.jws2.jabaws2.Jws2Instance@44a1af4e, jalview.ws.jws2.jabaws2.Jws2Instance@581d21e2]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@4099e13, jalview.ws.jws2.jabaws2.Jws2Instance@44a1af4e, jalview.ws.jws2.jabaws2.Jws2Instance@581d21e2]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@4099e13, jalview.ws.jws2.jabaws2.Jws2Instance@44a1af4e, jalview.ws.jws2.jabaws2.Jws2Instance@581d21e2]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@4099e13, jalview.ws.jws2.jabaws2.Jws2Instance@44a1af4e, jalview.ws.jws2.jabaws2.Jws2Instance@581d21e2]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@4099e13, jalview.ws.jws2.jabaws2.Jws2Instance@44a1af4e, jalview.ws.jws2.jabaws2.Jws2Instance@581d21e2]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@4099e13, jalview.ws.jws2.jabaws2.Jws2Instance@44a1af4e, jalview.ws.jws2.jabaws2.Jws2Instance@581d21e2]
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
DEBUG - Old discovery thread has finished.
DEBUG - Firing service changed event for []
DEBUG - Firing service changed event for []
DEBUG - Firing service changed event for []
DEBUG - Firing service changed event for []
DEBUG - Firing service changed event for []
DEBUG - Firing service changed event for []
DEBUG - Scanning news items: newsnew=false and lastDate is Thu Aug 13 13:06:18 BST 2020
DEBUG - Completed construction of reader.
DEBUG - Completed news thread.
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
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Rebuild WS Menu for service change
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Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Aug 13, 2020 12:06:19 PM compbio.ws.client.Jws2Client connectToRegistry
INFO: Connected to RegistryWS successfully!
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
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Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change