Class jalview.structure.Mapping

2

tests

0

failures

0

ignored

1.293s

duration

100%

successful

Tests

Test Duration Result
compareTransferredToRefPDBAnnot 0.817s passed
mapFer1From3W5V 0.476s passed

Standard output

File format identified as PDB
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3  2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 169.5/359.7
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
TYROSINE KINASE                         04-MAY-99   1QCF
CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH A SRC FAMILY-
SELECTIVE TYROSINE KINASE INHIBITOR
found biomolecule 1: A
biomolecule 1: number of transforms: 1
PTR = O-PHOSPHOTYROSINE
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
Setting space group name to P 21 21 21
1QCF
reading 3959 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
3959 atoms created
ModelSet: autobonding; use  autobond=false  to not generate bonds automatically
Time for creating model: 14 ms
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3  2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 149.3/359.7
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
TYROSINE KINASE                         04-MAY-99   1QCF
CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH A SRC FAMILY-
SELECTIVE TYROSINE KINASE INHIBITOR
found biomolecule 1: A
biomolecule 1: number of transforms: 1
PTR = O-PHOSPHOTYROSINE
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
Setting space group name to P 21 21 21
1QCF
reading 3959 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
3959 atoms created
ModelSet: autobonding; use  autobond=false  to not generate bonds automatically
Time for creating model: 14 ms
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3  2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 154.6/359.7
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
ELECTRON TRANSPORT                      06-FEB-13   3W5V
CROSS-LINKED COMPLEX BETWEEN FERREDOXIN AND FERREDOXIN-NADP+ R
found biomolecule 1: A, D
biomolecule 1: number of transforms: 1
found biomolecule 2: C, B
biomolecule 2: number of transforms: 1
FAD = FLAVIN-ADENINE DINUCLEOTIDE
FES = FE2/S2 (INORGANIC) CLUSTER
Setting space group name to P 1 21 1
3W5V
reading 6290 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
6290 atoms created
ModelSet: autobonding; use  autobond=false  to not generate bonds automatically
Time for creating model: 23 ms