Class jalview.renderer.seqfeatures.FeatureRendererTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testFilterFeaturesForDisplay | 0.017s | passed |
| testFindAllFeatures | 0.021s | passed |
| testFindComplementFeaturesAtResidue | 0.181s | passed |
| testFindFeaturesAtColumn | 0.035s | passed |
| testGetColour | 0.018s | passed |
| testIsVisible | 0.026s | passed |
Standard output
File format identified as Fasta File format identified as Fasta Java version: 11.0.5 Java Home: /srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10 amd64 Linux 3.10.0-1127.8.2.el7.x86_64 CMD [-props test/jalview/testProps.jvprops] executed successfully! Loaded Sequence Ontology from so-xp-simple.obo.zip (37ms) File format identified as Fasta registry.getSupportedServices: [RNAalifoldWS, AAConWS, MuscleWS, ClustalWS, ClustalOWS, DisemblWS, MSAprobsWS, MafftWS, GLprobsWS, IUPredWS, TcoffeeWS, GlobPlotWS, ProbconsWS, JronnWS] Attempting to connect with MafftWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@64e0000f Attempting to connect with MuscleWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@7c00d4ea Attempting to connect with ClustalWS... File format identified as Fasta Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@40f1acb Attempting to connect with ClustalOWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@f9c8af3 Attempting to connect with TcoffeeWS... File format identified as Fasta Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@4e6f3783 File format identified as Fasta Attempting to connect with ProbconsWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@21346caa
Standard error
Ignoring SO:0001957 as obsolete and duplicated by SO:0001979 Ignoring SO:0000437 as obsolete and duplicated by SO:0000800 Ignoring SO:0000554 as obsolete and duplicated by SO:0000801 Ignoring SO:0000767 as obsolete and duplicated by SO:0000179 Ignoring SO:0000058 as obsolete and duplicated by SO:0000803 Ignoring SO:0001052 as obsolete and duplicated by SO:0001649 Ignoring SO:0000052 as obsolete and duplicated by SO:0000802 Ignoring SO:0001053 as obsolete and duplicated by SO:0001648 DEBUG - Got last known dimensions for : x:468 y:384 width:450 height:325 DEBUG - Got last known dimensions for JAVA_CONSOLE_: x:415 y:237 width:225 height:81 DEBUG - Downloading data from identifiers.org DEBUG - Filechooser init thread started. DEBUG - Firing service changed event for [] DEBUG - Firing service changed event for [] DEBUG - Firing service changed event for [] DEBUG - Firing service changed event for [] DEBUG - Firing service changed event for [] DEBUG - Firing service changed event for [] DEBUG - Firing service changed event for [] DEBUG - Firing service changed event for [] DEBUG - Firing service changed event for [] DEBUG - (Re)-Initialising the discovery URL list. DEBUG - Setting default services DEBUG - A MsaWS service called Muscle Multiple Protein Sequence Alignment exists at http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS DEBUG - A MsaWS service called MAFFT Multiple Sequence Alignment exists at http://www.compbio.dundee.ac.uk/JalviewWS/services/MafftWS DEBUG - A MsaWS service called ClustalW Multiple Sequence Alignment exists at http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS DEBUG - A SecStrPred service called JPred Secondary Structure Prediction exists at http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred DEBUG - No service endpoints to use for service discovery. Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Aug 13, 2020 12:06:20 PM compbio.ws.client.Jws2Client connectToRegistry INFO: Connected to RegistryWS successfully! Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Aug 13, 2020 12:06:20 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Rebuild WS Menu for service change DEBUG - Filechooser init thread finished. Aug 13, 2020 12:06:20 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Aug 13, 2020 12:06:20 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Aug 13, 2020 12:06:20 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Aug 13, 2020 12:06:21 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Aug 13, 2020 12:06:21 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully!