Class jalview.io.StockholmFileTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| curlyWUSSsecondaryStructureForRNASequence | 0.017s | passed |
| dbrefOutput | 0.002s | passed |
| detectWussBrackets | 0s | passed |
| fullWUSSsecondaryStructureForRNASequence | 0.008s | passed |
| pfamFileDataExtraction | 0.057s | passed |
| pfamFileIO | 0.131s | passed |
| rfamFileIO | 0.134s | passed |
| secondaryStructureForRNASequence | 0.003s | passed |
| stockholmFileRnaSSAlphaChars | 0.005s | passed |
| stockholmFileRnaSSSpaceChars | 0.003s | passed |
| testAnnotationEquivalence | 0.008s | passed |
Standard output
Check sequence: Dm/1-25 There are feature!!! Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@733c7910 # STOCKHOLM 1.0 #=GS FER2_SPIOL AC P00224 FER2_SPIOL AASSDDDFFF // Attempting to connect with AAConWS... Check sequence: Dm/1-25 There are feature!!! File format identified as Stockholm Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@2b287a3b Attempting to connect with RNAalifoldWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@6c72935d Attempting to connect with JronnWS... Reading file: examples/PF00111_seed.stk File format identified as Stockholm Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@5a82577b Attempting to connect with DisemblWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@6539f5b0 Attempting to connect with GlobPlotWS... Output file in 'Stockholm': # STOCKHOLM 1.0 #=GF SE Prosite #=GF TP Domain #=GF DE 2Fe-2S iron-sulfur cluster binding domain #=GF WK Ferredoxin #=GF GA 20.70 15.00; #=GF AC PF00111.22 #=GF SQ 206 #=GF ID Fer2 #=GF AU Sonnhammer ELL #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 15929002 -E 1000 --cpu 4 HMM pfamseq #=GF DR HOMSTRAD; Ald_Xan_dh_1; #=GF TC 20.70 15.70; #=GF NC 20.60 14.90; #=GF PI fer2; #=GS DMPP_PSEUF/5-82 AC P19734 #=GS O52683_THEMA/3-65 AC O52683 #=GS NDUS1_NEUCR/38-101 AC P24918 #=GS P77908_MOOTH/4-67 AC P77908 #=GS XDHC_ECOLI/11-69 AC Q46801 #=GS NQRF_HAEIN/43-119 AC O05012 #=GS PDR_BURCE/241-314 AC P33164 #=GS CBDC_BURCE/8-85 AC Q51603 #=GS Q9ZNP2_COMTE/5-82 AC Q9ZNP2 #=GS Q9ZAN6_9BURK/12-91 AC Q9ZAN6 #=GS Q44501_AZOVI/10-107 AC Q44501 #=GS HOXU_CUPNH/5-66 AC P22318 #=GS DESET_MYCTU/303-373 AC O05875 #=GS TERPB_PSESP/8-92 AC P33007 #=GS POBB_PSEPS/236-311 AC Q52186 #=GS FER_BUCAP/10-92 AC O51882 #=GS Q45344_BURPI/10-88 AC Q45344 #=GS O30225_ARCFU/5-84 AC O30225 #=GS KSHB_MYCTU/273-348 AC P96853 #=GS DCMS_HYDPS/8-67 AC P19915 #=GS Q52140_PSEPU/3-78 AC Q52140 #=GS O24827_ACISP/7-85 AC O24827 #=GS FER_EUGVI/8-82 AC P22341 #=GS NUOG_SALTI/4-72 AC P0A1Y5 #=GS FER2_CYACA/8-83 AC P15789 #=GS RFBI_SALTY/5-76 AC P26395 #=GS FER2_RAPSA/9-84 AC P14937 #=GS O84964_9RALS/4-82 AC O84964 #=GS FER_MARPO/7-81 AC P09735 #=GS FER1_HALMA/35-108 AC P00217 #=GS P74801_SYNY3/5-63 AC P74801 #=GS Q9ZNE4_CLOPE/4-67 AC Q9ZNE4 #=GS Q53028_RHOCO/4-80 AC Q53028 #=GS P94680_COMTE/234-309 AC P94680 #=GS FER_BUMFI/9-84 AC P13106 #=GS O32476_PSESP/4-81 AC O32476 #=GS O85226_PSEFL/27-86 AC O85226 #=GS FER3_MAIZE/63-138 AC P27788 #=GS ETP1_SCHPO/525-592 AC Q10361 #=GS Q47914_SPHCR/241-316 AC Q47914 #=GS NQRF_CHLTR/46-122 AC O84745 #=GS FER_CHLFU/6-80 AC P56408 #=GS P73171_SYNY3/7-85 AC P73171 #=GS HCRC_THAAR/7-66 AC O33818 #=GS P72305_RHOOP/5-66 AC P72305 #=GS XYLZ_PSEPU/8-86 AC P23101 #=GS Q9Z9X8_9GAMM/242-317 AC Q9Z9X8 #=GS O17506_BOMMO/19-89 AC O17506 #=GS FER2_RICPR/11-93 AC Q9ZDW6 #=GS HCR_ECOLI/241-316 AC P75824 #=GS NQO3_THET8/4-88 AC Q56223 #=GS O61198_CAEEL/8-78 AC O61198 #=GS FER_DATST/8-82 AC P68165 #=GS O07876_SPHSX/8-91 AC O07876 #=GS FER_PALPL/9-83 AC P07484 #=GS P95533_PSEPU/253-328 AC P95533 #=GS Q46508_DESFR/6-74 AC Q46508 #=GS FER5_RHOCA/10-107 AC P37097 #=GS Q51944_BURPI/5-82 AC Q51944 #=GS VANB_PSEPU/231-307 AC O54037 #=GS O84985_PSEPU/271-347 AC O84985 #=GS FER1_SYNP2/9-83 AC P31965 #=GS FER_WHEAT/54-128 AC P00228 #=GS O23344_ARATH/57-131 AC O23344 #=GS NUOG_MYCTU/19-82 AC P95175 #=GS FER3_RAPSA/8-82 AC P14938 #=GS PHT2_PSEPU/243-316 AC Q05182 #=GS O52378_9RALS/3-78 AC O52378 #=GS P72223_PSEPU/14-73 AC P72223 #=GS FER_PERBI/6-80 AC P10770 #=GS Q52574_PSESP/5-83 AC Q52574 #=GS Q9ZJW1_HELPJ/4-65 AC Q9ZJW1 #=GS NDUS1_SOLTU/70-133 AC Q43644 #=GS NUOG_RICPR/4-67 AC Q9ZCF6 #=GS ALDO1_ARATH/23-95 AC Q7G193 #=GS FER_BRYMA/8-83 AC P07838 #=GS O30328_ACEEU/4-63 AC O30328 #=GS Q59128_ARTNI/14-73 AC Q59128 #=GS O53709_MYCTU/5-64 AC O53709 #=GS PUTX_PSEPU/8-92 AC P00259 #=GS ALDO4_ARATH/8-78 AC Q7G191 #=GS O54050_RHOCA/5-68 AC O54050 #=GS O31003_VIBAN/5-73 AC O31003 #=GS O17892_CAEEL/18-86 AC O17892 #=GS Q9Z8H9_CHLPN/8-83 AC Q9Z8H9 #=GS FER_TRIVA/13-90 AC P21149 #=GS O66892_AQUAE/7-72 AC O66892 #=GS O85675_ACIAD/8-85 AC O85675 #=GS FER2_PHYAM/9-83 AC P00231 #=GS FER2_APHSA/10-86 AC P00251 #=GS FERN_PSEPU/7-85 AC P23263 #=GS XDH_BOVIN/8-78 AC P80457 #=GS Q44513_ANAVA/6-69 AC Q44513 #=GS O27878_METTH/21-82 AC O27878 #=GS P74159_SYNY3/11-86 AC P74159 #=GS P71846_MYCTU/600-675 AC P71846 #=GS P95635_RHOPA/15-74 AC P95635 #=GS Q59261_CLOSA/4-67 AC Q59261 #=GS XDH_DROSU/13-83 AC P91711 #=GS Q9ZBN8_STRCO/5-65 AC Q9ZBN8 #=GS Q9ZNP1_COMTE/9-88 AC Q9ZNP1 #=GS O87815_CUPNE/22-85 AC O87815 #=GS Q17250_BOMMO/18-88 AC Q17250 #=GS Q59262_CLOAB/4-66 AC Q59262 #=GS VANB_PSES9/231-306 AC P12580 #=GS Q52167_PSEPU/8-86 AC Q52167 #=GS YJGC_BACSU/7-68 AC O34720 #=GS CSMI_CHLTE/5-82 AC O68988 #=GS FER2_SYNP6/8-83 AC P08451 #=GS ADO_BOVIN/9-79 AC P48034 #=GS NDUS1_DICDI/5-71 AC Q34312 #=GS O29566_ARCFU/5-80 AC O29566 #=GS FER6_RHOCA/7-91 AC P80306 #=GS NDOR_PSEPU/3-78 AC Q52126 #=GS P73388_SYNY3/9-84 AC P73388 #=GS YEAX_ECOLI/237-313 AC P76254 #=GS FER1_EQUAR/7-81 AC P00235 #=GS O87682_ARTNI/8-67 AC O87682 #=GS O87803_PSEST/5-82 AC O87803 #=GS P74283_SYNY3/5-88 AC P74283 #=GS O88034_STRCO/230-305 AC O88034 #=GS NDUS1_RECAM/4-67 AC O21241 #=GS BENC_ACIAD/19-98 AC P07771 #=GS IORA_BREDI/4-64 AC Q51697 #=GS FER6_MAIZE/66-141 AC P94044 #=GS XYLA_PSEPU/20-97 AC P21394 #=GS XDHE_BACSU/18-77 AC O32143 #=GS FERA_ALOMA/8-82 AC P81372 #=GS FER2_CAUCR/8-91 AC P37098 #=GS FERX_PSEPU/8-86 AC P23103 #=GS FER_APHSA/9-83 AC P00250 #=GS FER_HAEIN/10-92 AC P44428 #=GS FER2_NOSMU/10-85 AC P00249 #=GS Q9ZAM5_SPHSX/8-91 AC Q9ZAM5 #=GS Q52589_9PSED/8-67 AC Q52589 #=GS YFAE_ECOLI/4-77 AC P0ABW3 #=GS O49551_ARATH/44-127 AC O49551 #=GS Q51492_PSEAE/3-78 AC Q51492 #=GS YAGT_ECOLI/65-124 AC P77165 #=GS FER_ARCLA/8-82 AC P00223 #=GS FER_SYNY4/9-83 AC P00243 #=GS PHF1_CLOPA/4-67 AC P29166 #=GS ADX_PIG/71-155 AC P00258 #=GS O66748_AQUAE/6-70 AC O66748 #=GS Y092_METJA/14-73 AC Q57557 #=GS O69222_AZOVI/11-93 AC O69222 #=GS Q52061_PSEPU/8-86 AC Q52061 #=GS YCBX_ECOLI/293-362 AC P75863 #=GS ADRX_YEAST/67-149 AC Q12184 #=GS O85971_SPHAR/13-90 AC O85971 #=GS O53669_MYCTU/13-78 AC O53669 #=GS P96096_THIFE/9-86 AC P96096 #=GS O29575_ARCFU/14-75 AC O29575 #=GS XDH_EMENI/39-108 AC Q12553 #=GS O05933_PSEPU/11-88 AC O05933 #=GS Q46606_DESVU/3-71 AC Q46606 #=GS NQRF_VIBAL/39-115 AC Q56584 #=GS FER2_SPIOL/8-82 AC P00224 #=GS MOP_DESGI/6-65 AC Q46509 #=GS O84963_9RALS/4-81 AC O84963 #=GS MMOC_METTR/7-81 AC Q53563 #=GS FER1_SPIOL/58-132 AC P00221 #=GS FER3_CYACA/9-84 AC P00241 #=GS Q9ZBV9_STRCO/15-78 AC Q9ZBV9 #=GS FER2_PLEBO/10-85 AC P46035 #=GS FER_THEVL/9-84 AC P0A3D1 #=GS VANB_PSEUH/234-309 AC O05617 #=GS FER_PHYPA/57-132 AC O04166 #=GS O87617_PSEAE/3-78 AC O87617 #=GS Q9Z3W9_9SPHN/8-85 AC Q9Z3W9 #=GS TMOF_PSEME/4-81 AC Q03304 #=GS Q39648_CITSI/61-136 AC Q39648 #=GS FER1_PHYAM/8-82 AC P00229 #=GS O52837_BRAJA/6-65 AC O52837 #=GS VANB_ACIAD/234-309 AC O24840 #=GS FER_PSEAE/10-92 AC Q51383 #=GS P74022_SYNY3/6-69 AC P74022 #=GS FER_SILPR/57-131 AC P04669 #=GS PAAE_ECOLI/266-342 AC P76081 #=GS NQO3_PARDE/7-71 AC P29915 #=GS Q43983_ACICA/5-82 AC Q43983 #=GS Q44253_ACISP/251-326 AC Q44253 #=GS FER4_RHOCA/7-86 AC P16022 #=GS Y1309_HAEIN/3-75 AC P45154 #=GS O84062_CHLTR/8-83 AC O84062 #=GS O23887_MAIZE/15-85 AC O23887 #=GS CSMJ_CHLTE/5-82 AC O68983 #=GS NDUS1_BOVIN/34-97 AC P15690 #=GS O05397_BACSU/11-72 AC O05397 #=GS P95277_MYCTU/9-84 AC P95277 #=GS CBAB_COMTE/232-307 AC Q44257 #=GS P73774_SYNY3/7-88 AC P73774 #=GS FER1_CYAPA/10-85 AC P17007 #=GS FER_PORPU/10-85 AC P51320 #=GS FER_ODOSI/10-85 AC P49522 #=GS FER1_AQUAE/3-83 AC O67065 #=GS P74447_SYNY3/31-113 AC P74447 #=GS FER2_EQUAR/7-80 AC P00237 #=GS Q59656_PLEBO/573-647 AC Q59656 #=GS FER_GLEJA/8-82 AC P00233 #=GS P74449_SYNY3/11-88 AC P74449 #=GS Q9Z418_PSEPU/11-90 AC Q9Z418 #=GS P95461_9PSED/17-94 AC P95461 #=GS FER_SAMNI/8-82 AC P00226 #=GS P94157_SYNP6/6-69 AC P94157 #=GS O86347_MYCTU/231-301 AC O86347 FER_GLEJA/8-82 LTPDGE...RTIEVPDDKF.ILDAGE...E.A.GLDLPYSCRA.......GA....CSSCTGKLLDGRV.....DQSE...QSFLDDDQMAEGFV.....................LTCVAYPA FER2_RAPSA/9-84 IGPEGE..ENEFEVQDDQF.ILDAAE...E.A.GVDLPYSCRA.......GA....CSTCAGQIVKGQV.....DQSE...GSFLEDDHFEKGFV.....................LTCVAYPQ Q39648_CITSI/61-136 IGPMGE..EHEFEAQEDQY.ILDAAE...E.A.GVDLPYSCRA.......GA....CSTCAGKLVSGSV.....DQSD...GSFLDDNQMEAGYL.....................LTCISYPT FER3_MAIZE/63-138 VGPEGE..EHEFDAPDDAY.ILDAAE...T.A.GVELPYSCRA.......GA....CSTCAGKIESGSV.....DQSD...GSFLDDGQQEEGYV.....................LTCVSYPK FER6_MAIZE/66-141 VGPDGT..EHEFEAPDDTY.ILEAAE...T.A.GVELPFSCRA.......GS....CSTCAGRMSAGEV.....DQSE...GSFLDDGQMAEGYL.....................LTCISYPK FER1_SYNP2/9-83 ITPDGE...VSYDAPDDEY.ILDSAG...D.A.GYDLPASCRA.......GA....CSTCAGKIVSGTV.....DQSE...QSFLDDDQIEAGYV.....................LTCIAYPQ FER1_EQUAR/7-81 KTPSGE...FTLDVPEGTT.ILDAAE...E.A.GYDLPFSCRA.......GA....CSSCLGKVVSGSV.....DESE...GSFLDDGQMEEGFV.....................LTCIAIPE #=GR FER2_EQUAR/7-80 SS E----- EEEEE----- TT---- - S S----SS-- -- -STT---EEE-EE E--- -----HHHHH---- -TTT-EEE FER2_EQUAR/7-80 KTPDGD...ITFDVEPGER.LIDIGS...E.K..ADLPLSCQA.......GA....CSTCLGKIVSGTV.....DQSE...GSFLDDEQIEQGYV.....................LTCIAIPE FER2_PLEBO/10-85 NKKRNL..DITLPVDEDTT.VLEAAE...E.A.ELDLPFSCHS.......GA....CSSCVGKVVEGEI.....NQDD...QTFLDEEQVAKGFV.....................LLCVTYPR P95533_PSEPU/253-328 VLMKGQ..THAVPVRAGEL.LLSAML...R.A.GLPAPHACRV.......GE....CASCMCRLQAGEVQ....RLDS....SVLDEDDVAAG.W...................L.LACRTRAA KSHB_MYCTU/273-348 VELDGQ..THTVSWPRTAK.LLDVLL...A.A.GLDAPFSCRE.......GH....CGACACTLRAGKVN....MGVN....DVLEQQDLDEG.L...................I.LACQSRPE Q44253_ACISP/251-326 FMLNGI..KNSVMCSEDDFILNEIIK......AGINVPSSCCA.......GN....CGSCMCLLVSGDVI....LESN....TVLDASDEEDGWI.....................LACRSKPR Q59656_PLEBO/573-647 FAQSGK....EITCTQDDL.ILDIAD.....QAEVAIESSCRS.......GT....CGSCKCTLLEGEV.....SYDS..EPDVLDEHDRASGQI.....................LTCIARPV P71846_MYCTU/600-675 FTLSGQ..RAIFDLVPGDS.ILEGAL...G..LRSDAPYACMG.......GA....CGTCRAKLIEGNVE....MD....HNFALRKAELDAGYI.....................LTCQSHPT O84985_PSEPU/271-347 VISDGR..ALTFDLPRNTQNVLDAGN...A.I.GAELPYSCKA.......GV....CSTCKCRVIEGEV.....EMDS...NHALEDYEVAAGYV.....................LSCQTYPV PAAE_ECOLI/266-342 VRQDGR..DREIVLNADDESILDAAL...R.Q.GADLPYACKG.......GV....CATCKCKVLRGKV.....AMET...NYSLEPDELAAGYV.....................LSCQALPL HCR_ECOLI/241-316 FTKLQP..AREFYAPVGTT.LLEALE.....SNNVPVVAACRA.......GV....CGCCKTKVVSGEY.....TVSS...TMTLTDAEIAEGYV.....................LACSCHPQ O87803_PSEST/5-82 IKIADT..DVEFTISDRDT.ILRAAL...R.D.GIPISYECNS.......GG....CGSCKIDVVEGQVE...TLWGE...APGLSPRDKRK.SR...................K.LACQCLAS TMOF_PSEME/4-81 IQSDDL..LHHFEADSNDT.LLSAAL...R.A.ELVFPYECNS.......GG....CGACKIELLEGEVS...NLWPD...APGLAARELRK.NR...................F.LACQCKPL O32476_PSESP/4-81 LKIEGQ..APGTCG.SGKS.LLVSAL...A.N.GIGFPYECAS.......GG....CGVCKFELLEGNVQ...SMWPD...APGLSSRDREKGNR...................H.LACQCVAL Q51944_BURPI/5-82 ITIEGG..SAFSVAADEDT.LLRGAL...R.G.GIALPHECSV.......GG....CGACRFDLLSGLVE...SIWPE...APGLSERDRKR.GK...................H.LACQSRPL Q53028_RHOCO/4-80 INVQPF..SHEYSCEDGES.LLDGAL..RN...SLLLKYGCKH.......GG....CGTCKVRLLDGDV.....EEPG..SSFALTPEDRENDVI.....................LACASVPL Q45344_BURPI/10-88 YAWNRP..RSTTHARPPKA.SLTGML...R.LGRKGIPVGCVN.......GG....CGVCKVRVLDGST......RLGR.RQPCPRQRRRRSAGL...................T.LACREAPL Q9ZNP1_COMTE/9-88 VSVEQT..GDTYACGTHES.LLSGML...R.LGRKGIPVGCVN.......GG....CGVCKVQVLEGAV.....RHLGP.VSCAHVSDLERDQGY...................T.LACRVAPL Q9Z418_PSEPU/11-90 VHVMQT..GETFPCATDES.LLQGML...R.LGRKGIPVGCVN.......GG....CGVCKVHVIEGQC.....RPLGP.VSRAHVSAAEEARGF...................T.LACRVAPV Q9ZAN6_9BURK/12-91 VHVAQT..DETFPCAGNES.LLTGMV...R.LGRKGIPVGCVN.......GG....CGVCKVRIVEGQI.....KALGP.ISRAHVTLDEENQGY...................T.LACRVAPQ FERN_PSEPU/7-85 ITVQPG..GERFVCQPQQS.ALHAME...T.QGKRCLPVGCRG.......GG....CGLCKVRVLAGDY......ESGR.VSCKHLPVEAREQGY...................A.LACRLFAR O24827_ACISP/7-85 ITEQCS..GQRFPCKAGQS.VLKAME...Q.QGLECAPVGCRG.......GG....CGLCKVTVREGDY......ECGK.MSRVHAPPEALAQGE...................V.LACRIYPL FERX_PSEPU/8-86 VFEVLS..GQSFRCAEGQS.VLRAME...A.QGKRCIPVGCRG.......GG....CGLCRVRVLSGAY......RSGR.MSRGHVPAKAAAEAL...................A.LACQVFPQ Q52061_PSEPU/8-86 IRETVS..GQTFRCLPDQS.VLSAME...Q.QGKRCVPVGCRG.......GG....CGLCKVRVLSGTY......QCHK.MSCNHVPPEAAKQGL...................A.LACQLFPQ Q52167_PSEPU/8-86 VHETNS..GQSFTCRPDQS.VLRAME...E.QGKRCVPVGCRG.......GG....CGLCKVRVLSGDY......QCGR.MSCSQVPPEAAQQGL...................A.LACQLYPR O84964_9RALS/4-82 VEIADS..GQRYPCDPGQN.LLRAME...V.LGQRGIPAGCRG.......GG....CGVCKVRIESGRY......RTGK.MSRACLSEAEQGQGL...................V.LACKAFPD Q9Z3W9_9SPHN/8-85 IRILGG..GQ.FACPEGER.VLIAME...Q.FGSSDIGVGCRG.......GG....CGFCLVRVVEGEY......RTGK.MSTAKVSVADQAKGY...................A.LACRIYPM DMPP_PSEUF/5-82 VTIEPT..GEVIEVEDGQT.ILQAAL...R.Q.GVWLPFACGH.......GT....CATCKVQVVEGEVD...IGEAS...PFALMDIERDERKV.....................LACCAIPL O84963_9RALS/4-81 LTIEPI..GQTIPIAPGQT.VLDACL...R.S.GVWLPHACCH.......GL....CATCKVQVVEGEVD...QGEAS..SFALMDFER.DNGQC.....................LACCATAQ Q52574_PSESP/5-83 LTIEPL..GRTLDVAEGQT.LLDAAL...R.S.GVYIPHACGH.......GL....CGTCKVQVTSGEVD...HGAAN..PLRRSWISSGEEGKT.....................LACCATAL Q9ZNP2_COMTE/5-82 LTLEPL..GASIEVEEGQT.LLDAAL...R.Q.GIYIPHACGH.......GL....CGTCKIQVCDGDVD...HGAAN..PFALMDMER.EDGMT.....................LACCATLQ Q43983_ACICA/5-82 VTIEPA..GTIIQVEEDQT.ILDAAL...R.Q.GVWLPFACGH.......GT....CGTCKVQVTDGFYD...VGEAS..PFALMDIER.EENKV.....................LACCCKPE O87617_PSEAE/3-78 LHIQPL..GQTLSVDSGAN.LLEALR...A.AE.VPISYSCMA.......GR....CGTCRCKVLKGQV......L..E.SGREATLTNPHADDY...................V.LACMSAIT O52378_9RALS/3-78 LVVEPL..NLHLNAETGST.LLDVLR...S.NE.VPISYSCMS.......GR....CGTCRCRVIAGHL......R..D.NGPETGRPQAGKGTY...................V.LACQAVLT Q51492_PSEAE/3-78 LLVLPN..NRRLPFDSGAN.LLEVLR...E.HR.VGISYSCMS.......GR....CGTCRCRVIDGSV......I..S.SAAKSGDSNRIEEHY...................V.LACQSVLT NDOR_PSEPU/3-78 LLIQPN..NRIIPFSAGAN.LLEVLR...E.NG.VAISYSCLS.......GR....CGTCRCRVIDGSV......I..D.SGAENGQSNLTDKQY...................V.LACQSVLT Q52140_PSEPU/3-78 LLIQPN..NRLISFSPGAN.LLEVLR...E.NG.VAISYSCMS.......GR....CGTCRCRVTDGSV......I..D.SGTGSGLPHLVDEHY...................V.LACRSVLT Q9Z9X8_9GAMM/242-317 VRIASS..GATVHVDKHTT.IVAALA...S.I.GIEVDTSCGE.......GV....CGTCMVDVVSGTP.....EHRD....HCLSKAERASGKV...................I.CCCVSRAR VANB_PSEUH/234-309 VRIHST..GQVLQVPADQT.VSQVLD...A.A.GIIVPVSCEQ.......GI....CGTCITRVVDGEP.....DHRD....FFLTDAEKAKNDQ...................F.TPCCSRAK VANB_PSES9/231-306 GRLARS..GLTLQVPAERS.VAQVLD...D.A.GVCIPLACEQ.......GI....CGTCLTRVLDGEP.....EHRD....SFLTDAERARNDQ...................F.TPCCSRAR VANB_PSEPU/231-307 VQLNST..GQVFEVPADQS.VVHVLE...Q.H.GIAIAMSCEQ.......GI....CGTCLTRVLSGTPE....ASRP....VFLTEQEQALNDQ...................F.TPCCSRSK VANB_ACIAD/234-309 IEVLGS..DRKIEVSAHQT.ATQALL...E.H.GFDVPVSCEQ.......GI....CGTCITRVVSGTP.....DHRD....VFMTDEEHALNDQ...................F.TPCCSRAK O88034_STRCO/230-305 VVLARS..GRTVAVPPGTS.VLDAVR...E.T.GVEVLYSCTE.......GT....CGTCETEVVEGEP.....DHRD....SVLTEEERAAGET...................M.LICVSRCR P94680_COMTE/234-309 LVLQRA..GLSTTVDAHES.VLDAME...R.V.GVDFPWSCRE.......GI....CGTCEAPVLEGEV.....QHLD....YVLSPEERAEQRR...................M.MVCVSRCG CBAB_COMTE/232-307 VNLARS..GAQYVVREGET.ILDVLR...N.A.GHHVTSSCRQ.......GI....CGMCETTLISGVP.....DHRD....RLLTDSEKASGRT...................M.LICCSRAL POBB_PSEPS/236-311 VHLARS..GRTIPIAAGCT.ILDALQ...A.G.GVAVPSSCQQ.......GV....CGICETAVLAGVP.....DHRD....LVLSDQERAAGRT...................M.MICCSGSK YEAX_ECOLI/237-313 LVLARS..GKEFVVPEEMT.ILQVIE...N.NKAAKVECLCRE.......GV....CGTCETAILEGEA.....DHRD....QYFSDEERASQQS...................M.LICCSRAK Q47914_SPHCR/241-316 VLARRS..GQEFTVEPGMT.ILETLL...Q.N.GISRNYSCTQ.......GV....CGTCETKVLEGEP.....DHRD....WVLSDEKKASNST...................M.LICCSLSK #=GR PDR_BURCE/241-314 SS EEES-- --EEEE-TTS- HHHHHH H T T-----S--- -- ----EEEEEE--E E--- SS--TT T---E E ETTT-EES PDR_BURCE/241-314 VRLSRS..GTSFEIPANRS.ILEVLR...D.A.NVRVPSSCES.......GT....CGSCKTALCSGEA.....DHRD....MVLRDD..EKGTQ...................I.MVCVSRAK PHT2_PSEPU/243-316 VTLGRS..GIDLEIPVDRS.ILEVLR...D.N.GIRAPSSCES.......GT....CGSCRTRLIEGDV.....EHRD....MVLREDEQH..DQ...................I.MICVSRAR O86347_MYCTU/231-301 LELARS..RRVLRVPANRS.ALDVML.....DWDPTTAYSCQQ.......GF....CGTCKVRVLAGQV.....DRRG....RIIEGDN.....E...................M.LVCVSRAV YFAE_ECOLI/4-77 VTLRIT..GTQLLCQDEHP.SLLAAL...E.SHNVAVEYQCRE.......GY....CGSCRTRLVAGQV......D......WIAEPLAFIQPGE...................I.LPCCCRAK Y1309_HAEIN/3-75 IHLIRH..NTTLEFNNET..SLLDHL...E.KNNIHHEYQCRS.......GY....CGSCRVKIKKGKV......S......YKEMPLAFIQPDE...................I.LLCCCHVE O31003_VIBAN/5-73 VIVKPS..GVEYQSG..RN.ILDDAF...A.S.SISLEHSCKT.......GD....CGVCCAEVISGLV.....ENEN........GELVTQG.H...................I.LTCQSKAK RFBI_SALTY/5-76 IKIFPS..NIEFSGREDES.ILDAAL...S.A.GIHLEHSCKA.......GD....CGICESDLLAGEVV....DSKG.........NIFGQGDK...................I.LTCCCKPK P95461_9PSED/17-94 VQILPQ..DVTIVLEPGQT.LLEAAL...A.N.GIAYPHDCTV.......GT....CASCKTRLKQGRVR...EATPF...GYTLSKAELDA.GY...................I.LACQAFPR O85971_SPHAR/13-90 VTVEGS..PTTLDIPAGKT.LLEAML...D.A.GLAMPHDCKV.......GS....CGTCKFKLVSGKIG...ELSPS...ALALEGDELRS.GF...................R.LACQAIPR XYLA_PSEPU/20-97 VSVRGQ..GFQFKVPRGQT.ILESAL...H.Q.GIAFPHDCKV.......GS....CGTCKYKLISGRVN...ELTSS...AMGLSGDLYQS.GY...................R.LGCQCIPK YCBX_ECOLI/293-362 IDWQGQ....AFRGNNQQV.LLEQLE.....NQGIRIPYSCRA.......GI....CGSCRVQLLEGEV......T.P......LKKSAMGDDGT....................ILCCSCVPK P96096_THIFE/9-86 HTRDKQ..QVSFVCSEAED.LLSAAD...R.G.SILLPSQCRK.......GT....CGACVATVTAGTYH...LGEVS..MEALPEKAQ.ARGDV.....................LLCRTYPR MMOC_METTR/7-81 ETEDGE..TCRRMR.PSED.WISR.A...E.A.ERNLLASCRA.......G.....CATCKADCTDGDYE...LIDVK..VQAVPPDEE.EDGKV.....................LLCRTFPR O85675_ACIAD/8-85 NFADGK..TFFIAVQEDEL.LLDAAV...R.Q.GINLPLDCRE.......GV....CGTCQGTCETGIYE...QEYVD..EDALSERDL.AKRKM.....................LACQTRVK #=GR BENC_ACIAD/19-98 SS E----- EEEEEE----- HHHHHH H T T---S-S--- -- ----EEEEEE-EEE --GGGS -TTT--HHHHH---E ETTT-EEE BENC_ACIAD/19-98 QFEDGV..TRFIRIAQGET.LSDAAY...R.Q.QINIPMDCRE.......GA....CGTCRAFCESGNYD...MPEDNY.IEDALTPEEAQQGYV.....................LACQCRPT XYLZ_PSEPU/8-86 DFEDGV..TRFIDANTGET.VADAAY...R.Q.GINLPLDCRD.......GA....CGACKCFAESGRYS...LGEE.YIEDALSEAEA.EQGYV.....................LTCQMRAE CBDC_BURCE/8-85 RFEDDV..TYFITSSEHET.VADAAY...Q.H.GIRIPLDCRN.......GV....CGTCKGFCEHGEYD...GGDY.I.EDALSADEA.REGFV.....................LPCQMQAR O66892_AQUAE/7-72 RYSDGDFRWEEYEVDGEGKTVLEILQNIKEIDPTLSFRAMCRA.......GI....CGTCVVKVN.....................GEHK..........................LACNTRVY O85226_PSEFL/27-86 VTA.AL..GETVLSVIQATGLRQVAR...N.DHGQLVGAYCGM.......GV....CHCCLVQIDG...................RHKR...........................RACQTLVK O29575_ARCFU/14-75 AYWQSFEVPAKR.GMTVLEALYYIKE...NLDSSLAFRASCRM.......GI....CGSCAMKIN.....................DKP..........................RLACETQVL O27878_METTH/21-82 PHLESYEIPSKE.KMKVLDALQLINK...IHGANIAFRSSCRA.......GQ....CGSCAVKMN.....................GEV..........................VLACRAEVE Y092_METJA/14-73 EYLESYEVP..E.NITVLEALEYINK...HYEANILFRASCRN.......AQ....CGSCAVTIN.....................GEP..........................RLACETKVE FER5_RHOCA/10-107 IMKKDK..TIYAVAGNTATILALAKE...H.AIPIPF..ECG........DG...DCASCLIEVTHLDN.....KPAMAMMLTEKEKARLKELQMITAEEIEAA..EVSDLPPRFRLACQFIPR Q44501_AZOVI/10-107 LMPHNK..KVQAVAGKRSTLLGVAQE...N.GVKIPF..ECQ........DG...NCGSCLVKITHLDG.....ERIKGMLLTDKERNVLKSVGKLPKSEEERA..AVRDLPPTYRLACQTIVT Q46508_DESFR/6-74 ITIDGK..TTSVPE...GSTILDAAK...T.L.DIDIPTLCYLNLEALSINNKAASCRVCVVE.....................VEGRRN....L....................APSCATPVT Q9ZBV9_STRCO/15-78 FTLDGQ..EARVPE...GSTILDACR...A.A.GKDVPTLCEGDT..LAPKN...ACRVCVVD.....................VEGART....L....................APACSRKAE NUOG_MYCTU/19-82 LTIDGV..EISVPK...GTLVIRAAE...L.M.GIQIPRFCDHPL..LEPVG...ACRQCLV.....................EVEGQR....KP....................LASCTTVAT O87815_CUPNE/22-85 LEVDGV..SVTVPA...GTSVMRAAM...E.A.QIAVPKLCATDS..LRNFG...SCRLCLV.....................EIEGRR....GY....................PASCTTPVE #=GR NQO3_THET8/4-88 SS EE-SS- EEEE-- --BHHHHHH H - ------SS--TT S---- ----SEEB-------------------------S S- EETTT-B-- NQO3_THET8/4-88 VKVNDR..IVEVPP...GTSVMDAVF...H.A.GYDVPLFCSEKH..LSPIG...ACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQP....KL....................AASCVTAVA P74022_SYNY3/6-69 LTIDDK..AIAIEE...GASILQAAK...E.A.GVPIPTLCHLEG..ISEAA...ACRLCMVE.....................VEGTNK....L....................MPACVTAVS P94157_SYNP6/6-69 LQIDDQ..ELAANV...GQTVLQVAR...E.A.SIPIPTLCHLQG..VSDVG...ACRLCVVE.....................VAGSPK....L....................QPACLLTVS Q44513_ANAVA/6-69 LTINDQ..LISAQE...EETLLQAAQ...E.A.GIHIPTLCHLEG..VGDVG...ACRLCLVE.....................VAGSNK....L....................LPACVTKVA P77908_MOOTH/4-67 LTIDGQ..RVTAPE...GMTILEVAR...E.N.GIHIPTLCHHPK..LRPLG...YCRLCLVD.....................IEGAAK....P....................MTACNTPVA Q9ZJW1_HELPJ/4-65 MNINGK..TIECQE...GQSVLEAAR...S.A.GIYIPTICYLSG..CSPTV...ACKMCMV........................EMDG...KR....................IYSCNTKAK O05397_BACSU/11-72 VRVDGT..EIQARA...GATILDILN...E.N.GIEYPQICHVPE..VDPIQ...TCDTCIV........................EANG...KL....................VRSCATVAE YJGC_BACSU/7-68 ITINGV..EMEASE...EQTVLQLLN...N.S.SIEVPQVCYHPS..LGPIE...TCDTCIV........................SING...EL....................KRSCSAELK NUOG_SALTI/4-72 IHVDGK....EYEVNGADN.LLQACL...S.L.GLDIPYFCWHPAL.GSVGA....CRQCAVK..................QYQNAEDTR...GR...................LVMSCMTPAT O66748_AQUAE/6-70 KIYIDD...VEIEAEKGKTVLQVALE..N....GIDIPYFCYHPR..LSIAG...ACRMCVVY.......................WEDINR......................LVISCNLPVQ NDUS1_DICDI/5-71 FKINEI..ECEVNEEKEDITILQACT...A.N.GIEIPRFCYHEK..LTIAG...NCRMCLV.....................YVTNEE....KL....................LAACGIPLD NQO3_PARDE/7-71 IKIDDT....IIEVDPNMT.LIQACE...M.A.GIEVPRFCYHER..LSIAG...NCRMCLVEVVGG........PPK........PA............................ASCAMQVK NDUS1_NEUCR/38-101 LTIDGK..KVSIEA...GSALIQACE...K.A.GVTIPRYCYHEK..LMIAG...NCRMCLV.....................EVEKVP....KP....................VASCAWPVQ NUOG_RICPR/4-67 LIIDGS..EIEISE...GSTVYQACI...Q.A.GKEIPHFCYHAR..LKIAG...NCRMCLV.....................EIEKSQ....KP....................VASCAMPVS NDUS1_SOLTU/70-133 VFVDGY..PVKIPK...GMTVLQACE...I.A.GVDIPRFCYHSR..LSIAG...NCRMCLV.....................EVEKSP....KP....................VASCAMPAL NDUS1_RECAM/4-67 VFVDGL..SVEVKK...GATILQACA...Q.V.GIEIPRFCYHER..LSIAG...NCRMCLV.....................EVEKSP....KP....................VASCAMPVM NDUS1_BOVIN/34-97 VFVDGQ..SVMVEP...GTTVLQACE...K.V.GMQIPRFCYHER..LSVAG...NCRMCLV.....................EIEKAP....KV....................VAACAMPVM O52683_THEMA/3-65 IYVDGR..EVIIN..DNERNLLEALK.....NVGIEIPNLCYLS.....EASIYGACRMCLVEIN.......................GQIT........................TSCTLKPY Q46606_DESVU/3-71 AFINGK..EVRCEP...GRTILEAAR...E.N.GHFIPTLCELADIGHAPGT....CRVCLVE.....................IWRDKEAGPQI....................VTSCTTPVE HOXU_CUPNH/5-66 ITIDGK..TLTTEE...GRTLVDVAA...E.N.GVYIPTLCYLKDK.PCLGT....CRVCSVKVN.....................GN......V....................AAACTVRVS P72305_RHOOP/5-66 IEIDGV..TVTTEE...SRTLVDVAA...E.A.GVYIPTLCYLKGK.PSLGT....CRVCSVK.....................LNGTV..........................VAACTIRVA Q59261_CLOSA/4-67 IVIDEK..TIQVQE...NTTVIQAAL...A.N.GIDIPSLCYLNEC.GNVGK....CGVCAVE.....................IEGKNN....L....................ALACITKVE Q9ZNE4_CLOPE/4-67 IIINDK..TIEFDG...DKTILDLAR...E.N.GFDIPVLCELKNC.GNKGQ....CGVCLVE.....................QEGNDR....L....................LRSCAIKAK PHF1_CLOPA/4-67 IIINGV..QFNTDE...DTTILKFAR...D.N.NIDISALCFLNNCNNDINK....CEICTVE.....................VEGTG.....L....................VTACDTLIE Q59262_CLOAB/4-66 IILNGN..EVHTDK...DITILELAR...E.N.NVDIPTLCFLKDC.GNFGK....CGVCMVE.....................VEGKG.....F....................RAACVAKVE P74801_SYNY3/5-63 IHFLPD..DVTVAARVGEPILDVAER......AGVFIPTGCLM.......GS....CHACEVELG.......................DGTP.......................ICACISAVP XDHE_BACSU/18-77 MTVNGQ..AWEV.AAVPTTHLSDLLR...KEFQLTGTKVSCGI.......GR....CGACSILID.....................GK......L....................ANACMTMAY #=GR HCRC_THAAR/7-66 SS EEE--- EEEE EEETT-BHHHHHH HT------------ -- ----EEEET TE E EEGGGSBGG HCRC_THAAR/7-66 LTLNGR..ARED.LVPDNMLLLDYLR...ETVGLTGTKQGCDG.......GE....CGACTVLVD.....................DR......P....................RLACSTLAH P95635_RHOPA/15-74 LNVNGR..WRED.AVTDDMLLVDYLR...DIAGLTGVKTGCDG.......GE....CGACTVLID.....................GE......A....................APSCLVLAV XDHC_ECOLI/11-69 CTINGM..PFQLHAAPGTP.LSELLR...E.QGLLSVKQGCCV.......GE....CGACTVLVD....................G..TAID.........................SCLYLAA YAGT_ECOLI/65-124 LKVNGK..TEQL.EVDTRTTLLDTLR...ENLHLIGTKKGCDH.......GQ....CGACTVLVN.....................GR......R....................LNACLTLAV DCMS_HYDPS/8-67 VNVNGK..AQEK.AVEPRTLLIHFLR...EELNLTGAHIGCET.......SH....CGACTVDID.....................GR......S....................VKSCTHLAV Q52589_9PSED/8-67 MTVNGR..KVEE.AVEARTLLVHFLR...EKLNLTGTHIGCDT.......SH....CGACTVDVD.....................GK......S....................IKSCTHLAV O52837_BRAJA/6-65 LIVNGN..PVTA.NVDPRTLLVQFLR...ENLRLTGTHVGCDT.......SQ....CGACVVHLD.....................GK......A....................VKSCTTLAV O53709_MYCTU/5-64 MTVNGE..PVTA.EVEPRMLLVHFLR...DQLRLTGTHWGCDT.......SN....CGTCVVEVD.....................GV......P....................VKSCTMLAV O87682_ARTNI/8-67 VEVNGV..THAT.DVEPRRLLADFLR...DDLHLRGTRVGCEH.......GV....CGSCTVLLD.....................GQ......P....................VRSCTVLAV Q59128_ARTNI/14-73 VEVNGR..RRTV.AVDARETLADHLR...NDQKLTGIKLGCEH.......GV....CGACTILMD.....................GA......A....................VRSCLTLAA #=GR P72223_PSEPU/14-73 SS EEE--- EEEE EE-TTSBHHHHHH HT------------ -- ----EEEE- -- E EEGGGSBGG P72223_PSEPU/14-73 ATINGK..PRVF.YVEPRMHLADALR...EVVGLTGTKIGCEQ.......GV....CGSCTILID.....................GA......P....................MRSCLTLAV Q9ZBN8_STRCO/5-65 LTVNGR..PQEADDVWEGESLLYVLR...ERMGLPGSKNACEQ.......GE....CGSCTVRLD.....................GVP..........................VCSCLVAAG #=GR O54050_RHOCA/5-68 SS EEE--- EEEEE-S-TT-BHHHHHH H ------------ -- ----EEEEES ----E E EETTTSBGG O54050_RHOCA/5-68 FLLNGE..TRRVRIEDPTQSLLELLR...A.EGLTGTKEGCNE.......GD....CGACTVMIRD.................AAGSR......A....................VNACLMMLP O23887_MAIZE/15-85 LAVNGK..RYEAAGVAPSTSLLEFLR...TQTPVRGPKLGCGE.......GG....CGACVVLVSK.................YDPATDEVTEFS....................ASSCLTLLH ALDO4_ARATH/8-78 FAVNGE..KFEVLSVNPSTTLLEFLR...SNTCFKSVKLSCGE.......GG....CGACIVILSK.................YDPVLDQVEEYS....................INSCLTLLC ALDO1_ARATH/23-95 FAINGQRFELELSSIDPSTTLVDFLR...NKTPFKSVKLGCGE.......GG....CGACVVLLSK.................YDPLLEKVDEFT....................ISSCLTLLC O30328_ACEEU/4-63 FRLNGR..EVTV.DVPGDTPLLWVIR...DEVGLTGTKFGCGI.......GM....CGACTIHIG.....................GR......A....................TRSCVTPVS IORA_BREDI/4-64 FILNGQ..PVRVTEVPEDAPLLWVVR...EHLKLSGTKFGCGL.......GL....CGACTVHIN.....................GE......A....................ARSCITPLS XDH_EMENI/39-108 FYLNGT..KVILDSVDPEITLLEYLR...G.IGLTGTKLGCAE.......GG....CGACTVVVS..........QIN.....PTTKKL....YHA..................SINACIAPLV O61198_CAEEL/8-78 FNVNGK..DIKEENVDPELTLAYYLR...NKLGLRGTKLGCEE.......GV....CGSCTVVLGT.................WDDSLNKAVYSA....................VNACLVPLF O17892_CAEEL/18-86 FYVNGK..RVEEKDVDPKMTLATYLR...DKLKLTGTKIGCNE.......GG....CGACTIMISH.................IENGE..IKHFS....................ANSCLMPVC XDH_DROSU/13-83 FFVNGK..KVTDTNPDPECTLLTYLR...DKLRLCGTKLGCAE.......GG....CGACTVMISR.................MDRGQHKIRHLA....................VNACLTPVC O17506_BOMMO/19-89 FYVNGK..KVIESSPDPEWTLLWYLR...KKLRLTGTKLGCAE.......GG....CGACTVMVSK.................YNRQENKIIHLA....................VNACLAPVC Q17250_BOMMO/18-88 FFVNGK..KVLESNPDPEWTLLFYLR...KKLKLTGTKYGCGE.......GG....CGACTVMVSK.................YLKNEDRINHIA....................VNACLISVC ADO_BOVIN/9-79 FYVNGR..KVTEKNVDPETMLLPYLR...KKLRLTGTKYGCGG.......GG....CGACTVMISR.................YNPITKKIRHYP....................ANACLTPIC #=GR XDH_BOVIN/8-78 SS EEE--- EEEETT--TT-BHHHHHH HT------------ -- ----EEE EEE EETTTTEEEEEE EETTT-BGG XDH_BOVIN/8-78 FFVNGK..KVVEKNADPETTLLAYLR...RKLGLRGTKLGCGE.......GG....CGACTVM............LSK.....YDRLQDKIIHFS....................ANACLAPIC #=GR MOP_DESGI/6-65 SS EEE--- EEEE EE-TTSBHHHHHH HT------------ -- ----EEEE- -- E EEGGG-BGG MOP_DESGI/6-65 ITVNGI..EQNL.FVDAEALLSDVLR...QQLGLTGVKVGCEQ.......GQ....CGACSVILD.....................GK......V....................VRACVTKMK O53669_MYCTU/13-78 DESCGELREFTVEVNEGEVVLDVILRLQQTQTPDLAVRWNCKA.......GK....CGSCSAEIN.....................GKPR..........................LMCMTRMS O29566_ARCFU/5-80 TFL.PS..GKRAEVDEGKTILSAAQE...I.GEGIRS..LCGG.......KG...SCGKCL..VVVR........KGDVEILSEEAHEKFVRE..K.................GYYLACQTAVK O30225_ARCFU/5-84 TFE.PV..GKKVE.DEPDTILEIARR...N.GVLIRS..DCGG.......KG...VCGKCK..VVVVDY......RGSLSDITDHERKHLIEEEISK................GYRLACQARVE NQRF_CHLTR/46-122 NND.DS..LTKTV.DSGKTLLSSLLD...S.GIAIPS..PCGG.......KA...ACKQCK..VRIT.........KNADEPLETDRSTFSKQQLEQ................GWRLSCQTKVQ NQRF_HAEIN/43-119 NDD.PE..KAITL.PAGGKLLGALAS...K.GIFVSS..ACGG.......GG...SCGQCI..VKVK.........NGGGEILPTELSHINKREAKE................GYRLACQVNVK NQRF_VIBAL/39-115 NDD.PS..LAIVT.QPGGKLLSALAG...A.GVFVSS..ACGG.......GG...SCGQCR..VKVK.........SGGGDILPTELDHITKGEARE................GERLACQVAMK O84062_CHLTR/8-83 ADD......ENQEFHLEDGSSIAEV......CEHSGVPLACT........EG...VCGTCVIEVLEGA........DNLSDFSEAEYDFLGDPEDS.................NERLACQCCIK Q9Z8H9_CHLPN/8-83 SDD......EQQEFELEDNSEIAEP......CESMGIPFACT........EG...VCGTCVIEVLEGR........ENLSEFTEPEYDFLGEPEDS.................NERLACQCRIK CSMJ_CHLTE/5-82 IND......KPCNAKVGDLLLNTAK......LNKAHIGYICGG.......NG...ICQSCFVYVLEGA........ECLSEPGEDEKAFISDKLFAE................GGRLACRTTIV CSMI_CHLTE/5-82 IND......KTASSSVGQTIGKAAR......LNHAHVGYVCGG.......HG...LCQACYITVQEGA........DCLAPLTDVEKAFLSPRQIAA................GGRIACQATIA #=GR FER_TRIVA/13-90 SS EE----EEEE---TTEEHHHHHHT-- ----TTS--- -- -----EEEEEE--- - - - HHHHHHCTTS-TT EEEGGG-EE- FER_TRIVA/13-90 AVKGGVKKQLKFEDDQTLFTVLTEAG.......LMSADDTCQG.......NK...ACGKCICKHVSGKV......A.A..E..DDEKEFLEDQPAN..................ARLACAITLS P73774_SYNY3/7-88 LICLPD..NRLLEIDSNETILDALLK..G....DIAHISVCGG.......KA...NCSTCRIMVLDGIK.....NCSPPTSIEQALAKKLDFPFHV..................R.LACQTKLS FER_BUCAP/10-92 KLLLPK..GGCFECKEGETILNVALK...N.NIKLEHA..CEK.......SC...ACSTCH..CIIRKG......FLSLSGWSEKEEDVLDKAWGLE...............STSRLSCQAIIG O69222_AZOVI/11-93 EVHCPE..GRVVEAETGESILEAALR...N.DIEIEHA..CEM.......SC...ACTTCH..VIVRDG......FDSLEPSDELEDDMLDKAWGLE...............PESRLSCQARVG FER_HAEIN/10-92 EDFCPE..GMVVDAATGDN.LLEVAH...N.A.GVEIHHACDG.......SC...ACTTCHVIVREG........FDSLNETSDQEEDMLDKAWGLE...............MDSRLSCQCVVG FER_PSEAE/10-92 ADHCPE..GAVFEAKPGET.ILDAAL...R.N.GIEIEHACEK.......SC...ACTTCHVIVREG........LDSMEPSDELEDDMLDKAWGLE...............PDSRLSCQAVVA ADRX_YEAST/67-149 LKD.GS..QKTYEVCEGETILDIAQG...H.NLDMEG..ACGG.......SC...ACSTCH.VIVDPDY......YDALPEPEDDENDMLDLAYGLT...............ETSRLGCQIKMS ADX_PIG/71-155 NRD.GK..TLTTQGKVGDSLLDVVIE...N.NLDIDGFGACEG.......TL...ACSTCH.LIFEDHI......FEKLEAITDEENDMLDLAYGLT...............DRSRLGCQICLT FER2_RICPR/11-93 IND.EE..ERTVEAPIGLSILEIAHS...N.DLDLEG..ACEG.......SL...ACATCH.VMLEEEF......YNKLKKPTEAEEDMLDLAFGLT...............DTSRLGCQIILT O49551_ARATH/44-127 DKD.GE..EIHIKVPVGMNILEAAHE...N.DIELEG..ACEG.......SL...ACSTCHVIVMDTKY......YNKLEEPTDEENDMLDLAFGLT...............ATSRLGCQVIAK #=GR ETP1_SCHPO/525-592 SS --- -- EEEE- -- - - - ---- -- --STT-EEE-HHHH HHS- ---HHHHHHHCTB---- TTEE-----B-- ETP1_SCHPO/525-592 TPE.GR..EIMIE....GN......E...E.G.......ACEG.......SV...ACSTCHVIVDPEHY.....ELLD..PPEEDEEDMLDLAFGLE...............ETSRLGCQVLLR O07876_SPHSX/8-91 AAD.GR..EIETNVDIGTDLMHAGLY...N.SVPGLLG.ECSG.......GL...ACATCR.VHVPAEW......QGVLPAALPAEAELLGFCEESP...............PEARLSCQIKMT Q9ZAM5_SPHSX/8-91 SED.GS..ELETTVDVGVDLMHAGLY...N.SIPGILG.ECSG.......GL...ACATCR.VRVPVEW......QSILPPAFPSEAELLGFCDEAP...............PEARLSCQIKMT FER2_CAUCR/8-91 QHD.GA..EQVIDVKPGLTVMEGAVK...N.NVPGIDA.DCGG.......AC...ACATCH.VYVDEAW......LDKTGDKSAMEESMLDFAENVE...............PNSRLSCQIKVS #=GR FER6_RHOCA/7-91 SS --- -- EEEEE-----BHHHHHHT - ------- ---- -- SS-TTE EEE-HHH HTTS----HHHHHHHTTSSS--T TTEEEGGG-B-- FER6_RHOCA/7-91 EHN.GT..RHEVEAKPGLTVMEAARD...N.GVPGIDA.DCGG.......AC...ACSTCH.AYVDPAW......VDKLPKALPTETDMIDFAYEPNP..............ATSRLTCQIKVT P74447_SYNY3/31-113 IKLDPIDLKVAIETNDNLLSGLLGQD........LRIMKECGG.......RG...MCATCHVYITAGMES...LSPLNRREQRTLEVITTHNRYS...................R.LACQARVL P73171_SYNY3/7-85 SFPQTKFLPLSLEFNACLAEYLTPDN........SPILFGCRT.......GL....CGTCLVKVVGEIL......SPEAEEREILAILAPDDVQA...................R.LACQIKLT FER1_AQUAE/3-83 VIINGK....EFDIPKGVRFGELSHE.....IEKAGIEFGCTD.......GQ....CGVCVARVIKGMECL..NEPSEEEEETLWRVGAVDEDQR.....................LTCQLVIE FER4_RHOCA/7-86 TFTDVS...ITVNVPTGTRIIEMSEK......VGSGITYGCRE.......GE....CGTCMTHILEGSE.....NLSEPTALEMRVLEENLGGKD...................DRLACQCRVL P74283_SYNY3/5-88 FVKEQK....DIVVAQGANLREKALQNGVDIYTLKGKLMNCGG......YGQ....CGTCIVEITAGME.....NLSPKTDFENRVLRKKPDNFR.....................LACQTLVN #=GR PUTX_PSEPU/8-92 SS E-- -- EEEEE-----B HHHHHH H ---TTG------ -- SSSTTEEEE- TTTGTTS- ---TTT---GGGSSS---TTEEEGGG-B-- PUTX_PSEPU/8-92 SHD.GT..RRELDVADGVS.LMQAAV...S.NGIYDIVGDCGG.......SA...SCATCHVYVN................EAFTDKVP.....AANEREIGMLECVTAELKPNSRLCCQIIMT TERPB_PSESP/8-92 DEQSGE...YAVDAQDGQS.LMEVAT...Q.NGVPGIVAECGG.......SC...VCATCRIEIEDAWV......E.......IVGEANPDENDLLQSTGE........PMTAGTRLSCQVFID P95277_MYCTU/9-84 GYSDGT..HKTMPVRCDQT.VLDAAE.....EHGVAIVNECQS.......GI....CGTCVATCTAGRYQ....MG.R...TEGLSDVERAARKI.....................LTCQTFVT O05933_PSEPU/11-88 NFSDGV..SRSFDVEAGTS.ILDAAI.....ESEIPLLYQCRS.......GS....CSTCIAQLTEGEAH....TRAG..ASSTLLASEYASGQR.....................LLCLCQAQ DESET_MYCTU/303-373 FARSGK....SVAADAATS.LMDAGE.....GAGVQLPFGCRM.......GI....CQSCVVDLVEGHV......R.D.....LRTGQRHEPGTR....................VQTCVSAAS O23344_ARATH/57-131 VEHDGK..TTELEVEPDETILSKALD...S...GLDVPYDCNL.......GV....CMTCPAKLVTGTV.....DQSG....GMLSDDVVERGYT.....................LLCASYPT P74159_SYNY3/11-86 DRQNEK..DYSVIVSDDRYILHQAED...Q...GFELPFSCRN.......GA....CTACAVRVISGQIH....QP....EAMGLSPDLQRQGYA.....................LLCVSYAQ FER2_SYNP6/8-83 VIYQGQ..SQTFTADSDQS.VLDSAQ...A.A.GVDLPASCLT.......GV....CTTCAARILSGEV.....DQPD...AMGVGPEPAKQGYT.....................LLCVAYPR P73388_SYNY3/9-84 IQHQGQ..TYTISVPEDKT.VLQAAD...D.E.GIQLPTSCGA.......GV....CTTCAALITEGTA.....EQAD...GMGVSAELQAEGYA.....................LLCVAYPR FER1_HALMA/35-108 DEDYGS.....LEVNEGEY.ILEAAE...A.Q.GYDWPFSCRA.......GA....CANCAAIVLEGDI.....DM..D.MQQILSDEEVEDKNV....................RLTCIGSPD P74449_SYNY3/11-88 NPATGS..DVTIEVAEDEL.ILEAAE...N.Q.GLDLPYSCRA.......AS....CVACAGRLLEGTVE...HTDKG...SDFLKPEELAAGCV.....................LLCAAYAT FER2_NOSMU/10-85 NAAEGL..DETIEVPDDEY.ILDAAE...E.A.GLDLPFSCRS.......GS....CSSCNGILKKGTV.....DQSD...QNFLDDDQIAAGNV.....................LTCVAYPT FER2_APHSA/10-86 NEEEGI..NAILEVADDQT.ILDAGE...E.A.GLDLPSSCRA.......GS....CSTCAGKLVSGAA.......PNQDDQAFLDDDQLAAGWV.....................MTCVAYPT FER1_CYAPA/10-85 CEEQGL..DTTIECPDDEY.ILDAAE...E.Q.GIDLPYSCRA.......GA....CSTCAGKVVEGTV.....DQSD...QSFLDDAQLAAGYV.....................LTCVAYPS FER_PORPU/10-85 SEDEGI..DVTFDCSEDTY.ILDAAE...E.A.GIELPYSCRA.......GA....CSTCAGKVTEGSV.....DQSD...QSFLDDEQLLKGYV.....................LTCIAYPE FER_ODOSI/10-85 SEEHDI..DATIDCNDDVF.LLDAAE...E.Q.GIELPYSCRA.......GA....CSTCAGKVTEGDI.....DQSE...QTFLDDDQVGAGFV.....................LTCIAYPK FER_BUMFI/9-84 NEEKNI..NAVIKCPDDQF.ILDAAE...E.Q.GIELPYSCRA.......GA....CSTCAGKVLSGTI.....DQSE...QSFLDDDQMGAGFL.....................LTCVAYPT FER3_CYACA/9-84 NKDQGI..DETIECPDDQY.ILDAAE...E.Q.GLDLPYSCRA.......GA....CSTCAGKLLEGEV.....DQSD...QSFLDDDQVKAGFV.....................LTCVAYPT FER2_CYACA/8-83 NQKEGV..DVTINCPGDQY.ILDAAE...E.Q.GVDLPYSCRA.......GA....CSTCAGKLVKGSV.....DQSD...QSFLDEEQINNGFI.....................LTCVAYPT FER_BRYMA/8-83 KLDDGS..EAVIDCDEDSF.ILDVAE...E.E.GIDIPFSCRS.......GS....CSTCAGKIEGGTV.....DQSE...QTFLDDDQMEEGYV.....................LTCVAYPT FER_APHSA/9-83 KTPDGD..NVIT.VPDDEY.ILDVAE...E.E.GLDLPYSCRA.......GA....CSTCAGKLVSG........PAPDEDQSFLDDDQIQAGYI.....................LTCVAYPT FER_THEVL/9-84 VRPDGS..ETTIDVPEDEY.ILDVAE...E.Q.GLDLPFSCRA.......GA....CSTCAGKLLEGEV.....DQSD...QSFLDDDQIEKGFV.....................LTCVAYPR FER_PERBI/6-80 DTPDGK...KSFECPGDSY.ILDKAE...E.E.GLELPYSCRA.......GS....CSSCAGKVLTGSI.....DQSD...QAFLDDDQGGDGYC.....................LTCVTYPT FER3_RAPSA/8-82 ITPEGE...QEVECDDDVY.VLDAAE...E.A.GIDLPYSCRA.......GS....CSSCAGKVVSGSV.....DQSD...QSFLDDDQIAEGFV.....................LTCAAYPT FER1_SPIOL/58-132 VTPTGN...VEFQCPDDVY.ILDAAE...E.E.GIDLPYSCRA.......GS....CSSCAGKLKTGSL.....NQDD...QSFLDDDQIDEGWV.....................LTCAAYPV FER_SILPR/57-131 TKESGT...VTFDCPDDVY.VLDQAE...E.E.GIDLPYSCRA.......GS....CSSCAGKVVAGSV.....DQSD...QSFLDDDQIEAGWV.....................LTCAAYPS FER_WHEAT/54-128 VTPEGE...VELEVPDDVY.ILDQAE...E.E.GIDLPYSCRA.......GS....CSSCAGKLVSGEI.....DQSD...QSFLDDDQMEAGWV.....................LTCHAYPK FER_SAMNI/8-82 ITPDGP...QEFECPDDVY.ILEHAE...E.L.GIDIPYSCRA.......GS....CSSCAGKLVAGSV.....DQSD...QSFLDDEQIEEGWV.....................LTCVAYPK FERA_ALOMA/8-82 VTPQGQ...QEFDCPDDVY.ILDQAE...E.E.GIDLPYSCRA.......GS....CSSCAGKVKQGEV.....DQSD...GSFLDDEQMEQGWV.....................LTCVAFPT FER_ARCLA/8-82 ITPEGK...QEFEVPDDVY.ILDHAA...E.E.VGDLPYSCRA.......GS....CSSCAGKVTAGSV.....DQSD...GSYLDDDQMEAGWV.....................LTCVAYPT FER_DATST/8-82 VTPDGP...VEFNCPDDVY.ILDQAE...E.E.GHDLPYSCRA.......GS....CSSCAGKVTAGTV.....DQSD...GNYLDDDQMADGFV.....................LTCVAYPQ FER_PALPL/9-83 STPGGV...EEIEGDETTY.VLDSAE...D.Q.GIDLPYSCRA.......GA....CSTCAGIVELGTV.....DQSD...QSFLDDDQLNDSFV.....................LTCVAYPT FER_EUGVI/8-82 INPDGE..VTI.ECGEDQY.ILDAAE...D.A.GIDLPYSCRA.......GA....CSSCTGIVKEGTV.....DQSD...QSFLDDDQMAKGFC.....................LTCTTYPT FER_CHLFU/6-80 KTPSGE...ETIECPEDTY.ILDAAE...E.A.GLDLPYSCRA.......GA....CSSCAGKVESGEV.....DQSD...QSFLDDAQMGKGFV.....................LTCVAYPT FER_SYNY4/9-83 ITPDGE...NSIECSDDTY.ILDAAE...E.A.GLDLPYSCRA.......GA....CSTCAGKITAGSV.....DQSD...QSFLDDDQIEAGYV.....................LTCVAYPT FER1_PHYAM/8-82 VTPSGT...QTIDCPDDTY.VLDAAE...E.A.GLDLPYSCRA.......GS....CSSCTGKVTAGTV.....DQED...QSFLDDDQIEAGFV.....................LTCVAFPK FER2_PHYAM/9-83 VTPSGT...NTITCPADTY.VLDAAE...E.S.GLDLPYSCRA.......GA....CSSCAGKVTAGAV.....NQED...GSFLEEEQMEAGWV.....................LTCVAYPT FER2_SPIOL/8-82 VTPSGS...QVIECGDDEY.ILDAAE...E.K.GMDLPYSCRA.......GA....CSSCAGKVTSGSV.....DQSD...QSFLEDGQMEEGWV.....................LTCIAYPT FER_PHYPA/57-132 DGETGA..ENVXECSDEEY.XLDAAE...R.A.GMDLPYSCRA.......GA....CSSCAGIIKAGEV.....DQSD...QSFLDDSQIDDGFV.....................LTCVAYPA FER_MARPO/7-81 NTPTGQ...SVIDVEDDEY.ILDAAE...E.A.GLSLPYSCRA.......GA....CSSCAGKVTAGEV.....DQSD...ESFLDDDQMDEGYV.....................LTCIAYPT #=GC SS_cons EEESS-EEEEEEEEEETTCBHHHHHH...HTT-TTTGTTSS--TT..S..--...SSSTTEEEEEEHCEE....EHCCS..TTHHHHHHHTTSSET-TTT---GGGSSS---TTEEECCCSBGG #=GC seq_cons hphsup..thphpsssspp.lLcshc...p.t.slslshuCps.......Gs....CusCtsplhtu.................hpspphttt.h.....................LuCtshsp // <<EOF Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@11b0f481 Attempting to connect with IUPredWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@21275fac File format identified as Stockholm Check sequence: FER_GLEJA/8-82 There are feature!!! No annotations Check sequence: FER2_RAPSA/9-84 There are feature!!! No annotations Check sequence: Q39648_CITSI/61-136 There are feature!!! No annotations Check sequence: FER3_MAIZE/63-138 There are feature!!! No annotations Check sequence: FER6_MAIZE/66-141 There are feature!!! No annotations Check sequence: FER1_SYNP2/9-83 There are feature!!! No annotations Check sequence: FER1_EQUAR/7-81 There are feature!!! No annotations Check sequence: FER2_EQUAR/7-80 There are feature!!! Check sequence: FER2_PLEBO/10-85 There are feature!!! No annotations Check sequence: P95533_PSEPU/253-328 There are feature!!! No annotations Check sequence: KSHB_MYCTU/273-348 There are feature!!! No annotations Check sequence: Q44253_ACISP/251-326 There are feature!!! No annotations Check sequence: Q59656_PLEBO/573-647 There are feature!!! No annotations Check sequence: P71846_MYCTU/600-675 There are feature!!! No annotations Check sequence: O84985_PSEPU/271-347 There are feature!!! No annotations Check sequence: PAAE_ECOLI/266-342 There are feature!!! No annotations Check sequence: HCR_ECOLI/241-316 There are feature!!! No annotations Check sequence: O87803_PSEST/5-82 There are feature!!! No annotations Check sequence: TMOF_PSEME/4-81 There are feature!!! No annotations Check sequence: O32476_PSESP/4-81 There are feature!!! No annotations Check sequence: Q51944_BURPI/5-82 There are feature!!! No annotations Check sequence: Q53028_RHOCO/4-80 There are feature!!! No annotations Check sequence: Q45344_BURPI/10-88 There are feature!!! No annotations Check sequence: Q9ZNP1_COMTE/9-88 There are feature!!! No annotations Check sequence: Q9Z418_PSEPU/11-90 There are feature!!! No annotations Check sequence: Q9ZAN6_9BURK/12-91 There are feature!!! No annotations Check sequence: FERN_PSEPU/7-85 There are feature!!! No annotations Check sequence: O24827_ACISP/7-85 There are feature!!! No annotations Check sequence: FERX_PSEPU/8-86 There are feature!!! No annotations Check sequence: Q52061_PSEPU/8-86 There are feature!!! No annotations Check sequence: Q52167_PSEPU/8-86 There are feature!!! No annotations Check sequence: O84964_9RALS/4-82 There are feature!!! No annotations Check sequence: Q9Z3W9_9SPHN/8-85 There are feature!!! No annotations Check sequence: DMPP_PSEUF/5-82 There are feature!!! No annotations Check sequence: O84963_9RALS/4-81 There are feature!!! No annotations Check sequence: Q52574_PSESP/5-83 There are feature!!! No annotations Check sequence: Q9ZNP2_COMTE/5-82 There are feature!!! No annotations Check sequence: Q43983_ACICA/5-82 There are feature!!! No annotations Check sequence: O87617_PSEAE/3-78 There are feature!!! No annotations Check sequence: O52378_9RALS/3-78 There are feature!!! No annotations Check sequence: Q51492_PSEAE/3-78 There are feature!!! No annotations Check sequence: NDOR_PSEPU/3-78 There are feature!!! No annotations Check sequence: Q52140_PSEPU/3-78 There are feature!!! No annotations Check sequence: Q9Z9X8_9GAMM/242-317 There are feature!!! No annotations Check sequence: VANB_PSEUH/234-309 There are feature!!! No annotations Check sequence: VANB_PSES9/231-306 There are feature!!! No annotations Check sequence: VANB_PSEPU/231-307 There are feature!!! No annotations Check sequence: VANB_ACIAD/234-309 There are feature!!! No annotations Check sequence: O88034_STRCO/230-305 There are feature!!! No annotations Check sequence: P94680_COMTE/234-309 There are feature!!! No annotations Check sequence: CBAB_COMTE/232-307 There are feature!!! No annotations Check sequence: POBB_PSEPS/236-311 There are feature!!! No annotations Check sequence: YEAX_ECOLI/237-313 There are feature!!! No annotations Check sequence: Q47914_SPHCR/241-316 There are feature!!! No annotations Check sequence: PDR_BURCE/241-314 There are feature!!! Check sequence: PHT2_PSEPU/243-316 There are feature!!! No annotations Check sequence: O86347_MYCTU/231-301 There are feature!!! No annotations Check sequence: YFAE_ECOLI/4-77 There are feature!!! No annotations Check sequence: Y1309_HAEIN/3-75 There are feature!!! No annotations Check sequence: O31003_VIBAN/5-73 There are feature!!! No annotations Check sequence: RFBI_SALTY/5-76 There are feature!!! No annotations Check sequence: P95461_9PSED/17-94 There are feature!!! No annotations Check sequence: O85971_SPHAR/13-90 There are feature!!! No annotations Check sequence: XYLA_PSEPU/20-97 There are feature!!! No annotations Check sequence: YCBX_ECOLI/293-362 There are feature!!! No annotations Check sequence: P96096_THIFE/9-86 There are feature!!! No annotations Check sequence: MMOC_METTR/7-81 There are feature!!! No annotations Check sequence: O85675_ACIAD/8-85 There are feature!!! No annotations Check sequence: BENC_ACIAD/19-98 There are feature!!! Check sequence: XYLZ_PSEPU/8-86 There are feature!!! No annotations Check sequence: CBDC_BURCE/8-85 There are feature!!! No annotations Check sequence: O66892_AQUAE/7-72 There are feature!!! No annotations Check sequence: O85226_PSEFL/27-86 There are feature!!! No annotations Check sequence: O29575_ARCFU/14-75 There are feature!!! No annotations Check sequence: O27878_METTH/21-82 There are feature!!! No annotations Check sequence: Y092_METJA/14-73 There are feature!!! No annotations Check sequence: FER5_RHOCA/10-107 There are feature!!! No annotations Check sequence: Q44501_AZOVI/10-107 There are feature!!! No annotations Check sequence: Q46508_DESFR/6-74 There are feature!!! No annotations Check sequence: Q9ZBV9_STRCO/15-78 There are feature!!! No annotations Check sequence: NUOG_MYCTU/19-82 There are feature!!! No annotations Check sequence: O87815_CUPNE/22-85 There are feature!!! No annotations Check sequence: NQO3_THET8/4-88 There are feature!!! Check sequence: P74022_SYNY3/6-69 There are feature!!! No annotations Check sequence: P94157_SYNP6/6-69 There are feature!!! No annotations Check sequence: Q44513_ANAVA/6-69 There are feature!!! No annotations Check sequence: P77908_MOOTH/4-67 There are feature!!! No annotations Check sequence: Q9ZJW1_HELPJ/4-65 There are feature!!! No annotations Check sequence: O05397_BACSU/11-72 There are feature!!! No annotations Check sequence: YJGC_BACSU/7-68 There are feature!!! No annotations Check sequence: NUOG_SALTI/4-72 There are feature!!! No annotations Check sequence: O66748_AQUAE/6-70 There are feature!!! No annotations Check sequence: NDUS1_DICDI/5-71 There are feature!!! No annotations Check sequence: NQO3_PARDE/7-71 There are feature!!! No annotations Check sequence: NDUS1_NEUCR/38-101 There are feature!!! No annotations Check sequence: NUOG_RICPR/4-67 There are feature!!! No annotations Check sequence: NDUS1_SOLTU/70-133 There are feature!!! No annotations Check sequence: NDUS1_RECAM/4-67 There are feature!!! No annotations Check sequence: NDUS1_BOVIN/34-97 There are feature!!! No annotations Check sequence: O52683_THEMA/3-65 There are feature!!! No annotations Check sequence: Q46606_DESVU/3-71 There are feature!!! No annotations Check sequence: HOXU_CUPNH/5-66 There are feature!!! No annotations Check sequence: P72305_RHOOP/5-66 There are feature!!! No annotations Check sequence: Q59261_CLOSA/4-67 There are feature!!! No annotations Check sequence: Q9ZNE4_CLOPE/4-67 There are feature!!! No annotations Check sequence: PHF1_CLOPA/4-67 There are feature!!! No annotations Check sequence: Q59262_CLOAB/4-66 There are feature!!! No annotations Check sequence: P74801_SYNY3/5-63 There are feature!!! No annotations Check sequence: XDHE_BACSU/18-77 There are feature!!! No annotations Check sequence: HCRC_THAAR/7-66 There are feature!!! Check sequence: P95635_RHOPA/15-74 There are feature!!! No annotations Check sequence: XDHC_ECOLI/11-69 There are feature!!! No annotations Check sequence: YAGT_ECOLI/65-124 There are feature!!! No annotations Check sequence: DCMS_HYDPS/8-67 There are feature!!! No annotations Check sequence: Q52589_9PSED/8-67 There are feature!!! No annotations Check sequence: O52837_BRAJA/6-65 There are feature!!! No annotations Check sequence: O53709_MYCTU/5-64 There are feature!!! No annotations Check sequence: O87682_ARTNI/8-67 There are feature!!! No annotations Check sequence: Q59128_ARTNI/14-73 There are feature!!! No annotations Check sequence: P72223_PSEPU/14-73 There are feature!!! Check sequence: Q9ZBN8_STRCO/5-65 There are feature!!! No annotations Check sequence: O54050_RHOCA/5-68 There are feature!!! Check sequence: O23887_MAIZE/15-85 There are feature!!! No annotations Check sequence: ALDO4_ARATH/8-78 There are feature!!! No annotations Check sequence: ALDO1_ARATH/23-95 There are feature!!! No annotations Check sequence: O30328_ACEEU/4-63 There are feature!!! No annotations Check sequence: IORA_BREDI/4-64 There are feature!!! No annotations Check sequence: XDH_EMENI/39-108 There are feature!!! No annotations Check sequence: O61198_CAEEL/8-78 There are feature!!! No annotations Check sequence: O17892_CAEEL/18-86 There are feature!!! No annotations Check sequence: XDH_DROSU/13-83 There are feature!!! No annotations Check sequence: O17506_BOMMO/19-89 There are feature!!! No annotations Check sequence: Q17250_BOMMO/18-88 There are feature!!! No annotations Check sequence: ADO_BOVIN/9-79 There are feature!!! No annotations Check sequence: XDH_BOVIN/8-78 There are feature!!! Check sequence: MOP_DESGI/6-65 There are feature!!! Check sequence: O53669_MYCTU/13-78 There are feature!!! No annotations Check sequence: O29566_ARCFU/5-80 There are feature!!! No annotations Check sequence: O30225_ARCFU/5-84 There are feature!!! No annotations Check sequence: NQRF_CHLTR/46-122 There are feature!!! No annotations Check sequence: NQRF_HAEIN/43-119 There are feature!!! No annotations Check sequence: NQRF_VIBAL/39-115 There are feature!!! No annotations Check sequence: O84062_CHLTR/8-83 There are feature!!! No annotations Check sequence: Q9Z8H9_CHLPN/8-83 There are feature!!! No annotations Check sequence: CSMJ_CHLTE/5-82 There are feature!!! No annotations Check sequence: CSMI_CHLTE/5-82 There are feature!!! No annotations Check sequence: FER_TRIVA/13-90 There are feature!!! Check sequence: P73774_SYNY3/7-88 There are feature!!! No annotations Check sequence: FER_BUCAP/10-92 There are feature!!! No annotations Check sequence: O69222_AZOVI/11-93 There are feature!!! No annotations Check sequence: FER_HAEIN/10-92 There are feature!!! No annotations Check sequence: FER_PSEAE/10-92 There are feature!!! No annotations Check sequence: ADRX_YEAST/67-149 There are feature!!! No annotations Check sequence: ADX_PIG/71-155 There are feature!!! No annotations Check sequence: FER2_RICPR/11-93 There are feature!!! No annotations Check sequence: O49551_ARATH/44-127 There are feature!!! No annotations Check sequence: ETP1_SCHPO/525-592 There are feature!!! Check sequence: O07876_SPHSX/8-91 There are feature!!! No annotations Check sequence: Q9ZAM5_SPHSX/8-91 There are feature!!! No annotations Check sequence: FER2_CAUCR/8-91 There are feature!!! No annotations Check sequence: FER6_RHOCA/7-91 There are feature!!! Check sequence: P74447_SYNY3/31-113 There are feature!!! No annotations Check sequence: P73171_SYNY3/7-85 There are feature!!! No annotations Check sequence: FER1_AQUAE/3-83 There are feature!!! No annotations Check sequence: FER4_RHOCA/7-86 There are feature!!! No annotations Check sequence: P74283_SYNY3/5-88 There are feature!!! No annotations Check sequence: PUTX_PSEPU/8-92 There are feature!!! Check sequence: TERPB_PSESP/8-92 There are feature!!! No annotations Check sequence: P95277_MYCTU/9-84 There are feature!!! No annotations Check sequence: O05933_PSEPU/11-88 There are feature!!! No annotations Check sequence: DESET_MYCTU/303-373 There are feature!!! No annotations Check sequence: O23344_ARATH/57-131 There are feature!!! No annotations Check sequence: P74159_SYNY3/11-86 There are feature!!! No annotations Check sequence: FER2_SYNP6/8-83 There are feature!!! No annotations Check sequence: P73388_SYNY3/9-84 There are feature!!! No annotations Check sequence: FER1_HALMA/35-108 There are feature!!! No annotations Check sequence: P74449_SYNY3/11-88 There are feature!!! No annotations Check sequence: FER2_NOSMU/10-85 There are feature!!! No annotations Check sequence: FER2_APHSA/10-86 There are feature!!! No annotations Check sequence: FER1_CYAPA/10-85 There are feature!!! No annotations Check sequence: FER_PORPU/10-85 There are feature!!! No annotations Check sequence: FER_ODOSI/10-85 There are feature!!! No annotations Check sequence: FER_BUMFI/9-84 There are feature!!! No annotations Check sequence: FER3_CYACA/9-84 There are feature!!! No annotations Check sequence: FER2_CYACA/8-83 There are feature!!! No annotations Check sequence: FER_BRYMA/8-83 There are feature!!! No annotations Check sequence: FER_APHSA/9-83 There are feature!!! No annotations Check sequence: FER_THEVL/9-84 There are feature!!! No annotations Check sequence: FER_PERBI/6-80 There are feature!!! No annotations Check sequence: FER3_RAPSA/8-82 There are feature!!! No annotations Check sequence: FER1_SPIOL/58-132 There are feature!!! No annotations Check sequence: FER_SILPR/57-131 There are feature!!! No annotations Check sequence: FER_WHEAT/54-128 There are feature!!! No annotations Check sequence: FER_SAMNI/8-82 There are feature!!! No annotations Check sequence: FERA_ALOMA/8-82 There are feature!!! No annotations Check sequence: FER_ARCLA/8-82 There are feature!!! No annotations Check sequence: FER_DATST/8-82 There are feature!!! No annotations Check sequence: FER_PALPL/9-83 There are feature!!! No annotations Check sequence: FER_EUGVI/8-82 There are feature!!! No annotations Check sequence: FER_CHLFU/6-80 There are feature!!! No annotations Check sequence: FER_SYNY4/9-83 There are feature!!! No annotations Check sequence: FER1_PHYAM/8-82 There are feature!!! No annotations Check sequence: FER2_PHYAM/9-83 There are feature!!! No annotations Check sequence: FER2_SPIOL/8-82 There are feature!!! No annotations Check sequence: FER_PHYPA/57-132 There are feature!!! No annotations Check sequence: FER_MARPO/7-81 There are feature!!! No annotations Reading file: examples/RF00031_folded.stk File format identified as Stockholm Output file in 'Stockholm': # STOCKHOLM 1.0 #=GF WK http://en.wikipedia.org/wiki/SECIS_element #=GF NC 0.0 #=GF RT A survey of metazoan selenocysteine insertion sequences. #=GF TC 22.6 #=GF RN [2] #=GF RM 12458087 #=GF RL Biochimie 2002;84:953-959. #=GF AU Griffiths-Jones SR #=GF CC to act as a computational screen for selenoprotein genes [2]. #=GF DR GO:0001514 GO:selenocysteine incorporation #=GF ID SECIS_1 #=GF SS Published; PMID:12458087 #=GF RA Lambert A, Lescure A, Gautheret D; #=GF SQ 61 #=GF PI SECIS #=GF DE Selenocysteine insertion sequence 1 #=GF AC RF00031 #=GF SE Gautheret D, PMID:12458087 #=GF GA 20.0 #=GF BM cmsearch -Z 169604 -E 1000 --toponly CM SEQDB #=GF TP Cis-reg; #=GS M.musculus.13/1-60 AC AF333036 #=GS M.musculus.2/1-64 AC AF021345 #=GS D.melanogaster.3/1-68 AC AY060611 #=GS D.melanogaster.1/1-65 AC AY119185 #=GS H.sapiens.15/1-63 AC X13710 #=GS R.norvegicus.4/1-61 AC AF072865 #=GS M.musculus.4/1-65 AC AF096875 #=GS H.sapiens.6/1-66 AC AF093774 #=GS M.musculus.8/1-67 AC AF288740 #=GS H.sapiens.8/1-67 AC AL833145 #=GS M.musculus.6/1-61 AC AF136399 #=GS G.gallus.1/1-63 AC AF125575 #=GS S.mansoni.1/1-67 AC L37762 #=GS H.sapiens.7/1-70 AC X58295 #=GS S.scrofa.1/1-68 AC AF380118 #=GS B.taurus.1/1-64 AC D88033 #=GS B.taurus.3/1-66 AC AB017534 #=GS M.musculus.10/1-66 AC AB030643 #=GS O.niloticus.3/1-65 AC Y11111 #=GS H.sapiens.12/1-67 AC U43286 #=GS M.musculus.12/1-65 AC AC002327 #=GS S.scrofa.3/1-63 AC AF532927 #=GS R.norvegicus.3/1-67 AC AF390544 #=GS M.musculus.14/1-67 AC U43285 #=GS B.taurus.5/1-61 AC AB022283 #=GS H.sapiens.10/1-62 AC X71973 #=GS H.sapiens.3/1-68 AC U67171 #=GS R.norvegicus.1/1-61 AC X57999 #=GS B.taurus.7/1-61 AC X13684 #=GS H.sapiens.1/1-63 AC AF201385 #=GS M.musculus.1/1-64 AC AF195142 #=GS H.sapiens.14/1-62 AC S79854 #=GS M.musculus.3/1-64 AC X03920 #=GS R.norvegicus.7/1-66 AC L24896 #=GS M.musculus.5/1-66 AC AF241527 #=GS R.norvegicus.5/1-62 AC X12367 #=GS D.melanogaster.2/1-63 AC AC092237 #=GS C.elegans.1/1-64 AC U61947 #=GS M.musculus.7/1-64 AC X84742 #=GS M.musculus.9/1-66 AC AF274027 #=GS O.niloticus.1/1-59 AC Y11109 #=GS G.gallus.2/1-60 AC Y11110 #=GS D.rerio.1/1-66 AC AF322071 #=GS H.sapiens.4/1-71 AC AF195141 #=GS H.sapiens.5/1-57 AC X53463 #=GS G.gallus.3/1-73 AC Y11273 #=GS B.taurus.2/1-64 AC D25220 #=GS S.scrofa.2/1-65 AC L12743 #=GS B.taurus.6/1-67 AC AF053984 #=GS B.taurus.4/1-64 AC AB032826 #=GS H.sapiens.9/1-58 AC S48220 #=GS X.laevis.1/1-67 AC L28111 #=GS O.niloticus.2/1-61 AC Y11109 #=GS M.musculus.11/1-63 AC AL645723 #=GS S.scrofa.4/1-64 AC X76008 #=GS O.aries.1/1-68 AC U67853 #=GS H.sapiens.11/1-63 AC AF166127 #=GS R.norvegicus.2/1-64 AC M63574 #=GS H.sapiens.13/1-64 AC BC003127 #=GS H.sapiens.2/1-65 AC AL049837 #=GS R.norvegicus.6/1-67 AC U25264 #=GR D.melanogaster.1/1-65 SS ................(((((((((((......((((......)))..)........)))))).).).)))...................... D.melanogaster.1/1-65 G.AGCC.CU...AUGAUCGAUGAUUGG.CAAA.UCCUCUC..GAGG..A.......ACCGAUC.G.U.UGAGAA..CCCCU.....UUGCCUU #=GR D.melanogaster.2/1-63 SS ................(((((((((((......((((......)))..)........)))))).).).)))...................... D.melanogaster.2/1-63 C.AUUCAACU.UAUGAGGAUUAUUUCU.UAAA.GGCCUCU...GGC..U.......CGGAAAU.A.G.UCUGAA...CCU........UAUUG #=GR D.melanogaster.3/1-68 SS (.(((...(....((((((((((((((......((((......))).).........)))))).).).)).).)...)).....)....)))) D.melanogaster.3/1-68 G.UGGCGCU..UAUGACGCAGUUGUCU.UAAA.CUCGAAC..UCGA.GC........GGGCAA.U.U.GCUGAU...UACG...AUUAACCAC #=GR O.niloticus.1/1-59 SS ......(((...(((..(((((.((..........)).)....)))...........)((((.......))))....)))).......))... O.niloticus.1/1-59 G.UUUCUCA...GUGAAGGCUACAGAU.UAAA..CCUCU....GGC...........CUCUGG.A.G.CCAGAU..GCAUU.......GAAAC #=GR O.niloticus.2/1-61 SS ..((((.....((((..(((((.((..........)).)....)))...........)((((.......))))....)))).......)))). O.niloticus.2/1-61 U.GUUUAUU..AAUGACGGCUACAGAU.UAAA..CCUUU....AGC...........CUCUGG.A.G.CCAGAU..GCAUU......CAAACA #=GR O.niloticus.3/1-65 SS (.((((..........(((((((((((.(......((.......))..........))))))).).).))).................))))) O.niloticus.3/1-65 G.UGUCUCU...GUGAAGUUCGGUUUU.UAAA.AGGGUCA...UCC..A.......GAAAACC.G.ACACUGAU..GUUUC......CGACAC #=GR D.rerio.1/1-66 SS ...((((((.......(((((((..(.....(.(((........)).)).........)..)).).).))).........).......))))) D.rerio.1/1-66 A.UGUGGUCUUUAUGAAGGCAGGUGCA.GAAA.CUAUGCA...CUA.GU........GGUGUC.U.G.UCUGAU..GUUUG.......GCCAU #=GR X.laevis.1/1-67 SS .................((((((.(((......(((((....))))..)........))).)).).).))....................... X.laevis.1/1-67 G.UGUUUGCA.AAUGACGACCGAUUUU.GAAA.UGGUCUCACGGCC..A.......AAAACUC.GUG.UCCGAC...AUC........AACCC #=GR G.gallus.1/1-63 SS (.((.(..(...((...((((((((((......((((......)))..)........)))))).).).))..))..)...........).))) G.gallus.1/1-63 G.UGUGUUU...AUGAAGAGCACUAAC.AAAA.GAGUAAU.UGACU..C.......AGUUGGU.G.U.UCAGAU..GCU.........CUCAC #=GR G.gallus.2/1-60 SS ................((((((((((................................))))).).)..)))..................... G.gallus.2/1-60 U.AUUUGUC...AUGACAGUCACAGCA.UAAA..GCGCA....GAC...........GGCUGU.G.A.CCUGAU..UUUAG......AAAAUA #=GR G.gallus.3/1-73 SS ......(((...(..((((((((((((......((((((..........))).))).)))))).).).)).......)).......).))).. G.gallus.3/1-73 U.AUUUCUU..UGUGAUGACCGAUUUU.GAAA.UGGGUUU...CUC..UAAUGCCAGGAAAUC.GUG.UCUGAU...GUUG.....UCAAGUA #=GR M.musculus.1/1-64 SS (.((((.(....((.(((.((((((((..............................)))))).).).))).)).....)........))))) M.musculus.1/1-64 G.UCACCGA...AUGAUCUGCUCUGGU.CAAA.UCCUUCU...AUG..C......CAGCCAGG.G.U.GGUGAU..GACCC.......GUGAC #=GR M.musculus.2/1-64 SS (.(((((..........(((((((((........(((......)))............))))).).).))..........).......))))) M.musculus.2/1-64 G.UUACAUU..AAUGAGAACAGAAACA.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGGAU..AGCUU.......GUAAU #=GR M.musculus.3/1-64 SS (.(((.(((..(..((.((((((((.(((................)...........)))))).).).))......))..).....))))))) M.musculus.3/1-64 G.GUUCUUC..CAUGAUGGUGUUUCCUCUAAA..UUUGC....ACG...........GAGAAA.C.A.CCUGAU.UUCCAG.....GAAAAUC #=GR M.musculus.4/1-65 SS (.(((((.........(((((((.(((......((((......)))..)........))).)).).).))).........).......))))) M.musculus.4/1-65 G.UGUGCGA...AUGAUAACUACUGAC.GAAA.GAGCUGU.CUGCU..C.......AGUCUGU.G.G.UUGGAU...GUAG......UCACAC #=GR M.musculus.5/1-66 SS (.((((..(...((...((((((((((.(.....(((......)))..........))))))).).).))..))..)...........))))) M.musculus.5/1-66 G.CCGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUUA...GAC..C.....UGUGGUCUU.U.C.CUCGAU..GUUCC......UGCGGC #=GR M.musculus.6/1-61 SS (.((((...........(((((((((..(.....(((......)))..).........))))).).).))..................))))) M.musculus.6/1-61 G.UCAGAUG...AUGAUGGCCUGGGCA.GAAA.CCCCAUG..UGGG..C........CGCCCA.G.G.UUUGAA...CCC........CUGGC #=GR M.musculus.7/1-64 SS ................(((.(((((((....(.(((.......)))..)........)))))).)...)))..(...(((........).))) M.musculus.7/1-64 G.UGUCUCU...AUGAAGGAGGGGCCC.GAAG.CCCUUGU...GGG..C........GGGCCU.C.C.CCUGAG...CCCG....UCUGUGGU #=GR M.musculus.8/1-67 SS ..((((......((.(((.((((((((......((((......))).).........)))))).))..))).))..............)))). M.musculus.8/1-67 U.UUGCAUU..AAUGAGGAUUACACAG.AAAA.CCUUUGU..UAAG.GA.......CUUGUGU.AGA.UCUGAU..AAUUG.......GCAAA #=GR M.musculus.9/1-66 SS (.(((..((..((....((.((((((.....(.((((......))).)).........))))).)...))))))...)).).......).... M.musculus.9/1-66 C.CGGCACU..CAUGAAGGUCUGCUUG.AAAA.CCAGCCU..GCUG.GU........GGGGCA.G.U.CCUGAG.GACCUG.......GCGUG #=GR M.musculus.10/1-66 SS (.(((..((..((....((.((((((.....(.((((......))).)).........))))).)...))))))...)).).......).... M.musculus.10/1-66 C.CGGCACU..CAUGAAGGUCUGCCUG.AAAA.CCAGCCU..GCUG.GU........GGGGCA.G.U.CCUGAG.GACCUG.......GCGUG #=GR M.musculus.11/1-63 SS (.((((...........((((((((((.(...............))...........).)))).).).))................))))).. M.musculus.11/1-63 U.AUUUGUG..UAUGAUGGUCACAGUG.UAAA..GUUCC....CAC...........AGCUGU.G.A.CUUGAU..UUUUA....AAAAUGUC #=GR M.musculus.12/1-65 SS (.(((((..........((((((((((......((....)..)..............)))))).).).))..........).......))))) M.musculus.12/1-65 C.UCAGCAG..GAUGAUGAGAAGGGCU.GAAA.UGCUGCC..AAAC..C.......AGGUCCU.U.U.UCUGAU..GGUGG.......CUGGG #=GR M.musculus.13/1-60 SS (.(((......))))..(((((((.((......(((.........).))........)).))).).).))....................... M.musculus.13/1-60 C.AUGCGUC..CAUGAAGUCACUGGCC.UCAA.GCCCAA....GUG.GU........GGGCAG.U.G.ACAGAA...GA.........GCUGC #=GR M.musculus.14/1-67 SS (.(((((.........(((.((..(((.(.....(((((((....)..)........)))))).).).)..)))))....).......))))) M.musculus.14/1-67 C.UCUGAUA...AUGAUGUCUCUCCCU.CUAA.CUCCCAGUAAGGA..C........UGGGAG.A.G.GCUGAACAAACCU.......CAGAG #=GR R.norvegicus.1/1-61 SS ....((((.........((((((((((.(...............))...........).)))).).).)).........)).......))... R.norvegicus.1/1-61 A.UAUUUGUU.UAUGAUGGUCACAGUG.UAAA..GUUCA....CAC...........AGCUGU.G.A.CUUGAU..UUUUA.......AAAAU #=GR R.norvegicus.2/1-64 SS ............((((((((((((((........(((......)))............))))).).).))........))).......))... R.norvegicus.2/1-64 G.UUACAUU..GAUGAGAACAGAAACA.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGGAU..AGCUC.......GUAAU #=GR R.norvegicus.3/1-67 SS ..((((..........(((((((((((.(....((((......)))).)........)))))).).).))).................)))). R.norvegicus.3/1-67 U.UUGCAUU..AAUGAGGAUUACACAG.AAAA.CCUUUGU..UAAGGGU........UUGUGUCG.A.UCUGCU..AAUUG.......GCAAA #=GR R.norvegicus.4/1-61 SS (.(((........)))).(((..((...(.......)..).)..))..).........((.((.(.(............)........))))) R.norvegicus.4/1-61 G.UCAGAUG...AUGACGGCCUGUGCA.GAAA.CCCCCAC.GUGGG..C........UGC.CA.G.G.UUUGAA...CCC........CUGGC #=GR R.norvegicus.5/1-62 SS (.((((((......(((((((((((.((((..............))...........)))))).).).)).).).)....)......)))))) R.norvegicus.5/1-62 G.UUUUUCC...AUGACGGUGUUUCCUCUAAA..UUUAC....AUG...........GAGAAA.C.A.CCUGAU.UUCCAG......AAAAAU #=GR R.norvegicus.6/1-67 SS (.((((..(...((((..(((((((((.(.....(((......)))..........))))))).).).))).))..)...........))))) R.norvegicus.6/1-67 G.CCGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUCA.AAGAC..C.....UGUGGUCUU.U.C.UUCGAU..GUUCU.......GCGGC #=GR R.norvegicus.7/1-66 SS (.(((..((..(.....((.((((((.....(.((((......))).)).........))))).)...)).)))...)).).......).... R.norvegicus.7/1-66 C.CGGCACU..CAUGACGGUCUGCCUG.AAAA.CCAGCCC..GCUG.GU........GGGGCA.G.U.CCCGAG.GACCUG.......GCGUG #=GR H.sapiens.1/1-63 SS (.((((...........(((.((((((......(((((....))))..)........))))))...).))..................))))) H.sapiens.1/1-63 G.CCAGAUG...AUGACGACCUGGGUG.GAAA.CCUACCC.UGUGG..G........CACCCA.U.G.UCCGAG...CCCC.......CUGGC #=GR H.sapiens.2/1-65 SS (.(((((.........(((((((((((......(((((....))))..)........)))))).).).))).........).......))))) H.sapiens.2/1-65 G.UGUGCGG...AUGAUAACUACUGAC.GAAA.GAGUCAU.CGACU..C.......AGUUAGU.G.G.UUGGAU...GUAG......UCACAU #=GR H.sapiens.3/1-68 SS ..(((...(...((.(..(((((((((.......(((......)))...........)))))).).).).).))..)..........)))... H.sapiens.3/1-68 G.ACGCUUC...AUGAUAGGAAGGACU.GAAA.AGUCUUG.UGGAC..A.....CCUGGUCUU.U.C.CCUGAU..GUUCU......CGUGGC #=GR H.sapiens.4/1-71 SS ...(((.((.....(((((((((((((....(.((((......)))..).......))))))).)...........)))))..).)).))).. H.sapiens.4/1-71 G.ACUGACAU.UAUGAAGGCCUGUACU.GAAG.ACAGCAA..GCUG..U.......UAGUACA.G.A.CCAGAU..GCUUU..CUUGGCAGGC #=GR H.sapiens.5/1-57 SS ..((((...........((((((...........((((...................)))))).).).))..................)))). H.sapiens.5/1-57 U.UCACAGA...AUGAUGGCACCUUCC.UAA...ACCCU....CAU...........GGGUGG.U.G.UCUGAG..AGGC........GUGAA #=GR H.sapiens.6/1-66 SS (.(((((.........(((((((((((....((.(((......)))..).....)..)))))).).).))).........).......))))) H.sapiens.6/1-66 G.UGUGCGG...AUGAUAACUACUGAC.GAAAGAGUCAUC...GAC..C.....UCAGUUAGU.G.G.UUGGAU...GUAG......UCACAU #=GR H.sapiens.7/1-70 SS ..(((.((((.((...((((((((.........((((......)))..)...............).).)))......)))...))))))))). H.sapiens.7/1-70 U.GGCGUCUU.CAUGAGGGAGGGGCCC..AAA.GCCCUUG..UGGG..C........GGACCU.C.C.CCUGAG...CCUGUCUGAGGGGCCA #=GR H.sapiens.8/1-67 SS ..(((((..........(((((((((........(((......)))............))))).).).)).........)).....))).... H.sapiens.8/1-67 U.UUGCUUU..AAUGAGAAUAGAAACG.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGGAU.AAUUAG.....CAGUUUA #=GR H.sapiens.9/1-58 SS .............(((.((.(((((((..............................)))))).)...)).......)))............. H.sapiens.9/1-58 U.AUUUGUU..UAUGAUGGCCACAGCC.UAAA..GUACA....CAC...........GGCUGU.G.A.CUUGAU...UCA........AAAGA #=GR H.sapiens.10/1-62 SS ...((((....(......)..))))............((....(((..(........(((........))))......))).......))... H.sapiens.10/1-62 C.CGGCACU..CAUGACGGCCUGCCUG.CAAA..CCUGC....UGG..U........GGGGCA.G.A.CCCGAA.AAUCCA.......GCGUG #=GR H.sapiens.11/1-63 SS (.((((...........(((.((((((......(((((....))))..)........))))))...).))..................))))) H.sapiens.11/1-63 G.CCGGAUG...AUGACGACCUGGGUG.GAAA.CCUACCC.UGUGG..G........CACCCA.U.G.UCCGAG...CCCC.......CUGGC #=GR H.sapiens.12/1-67 SS (.((((.......((..(((((((((.......((........)).............))))).).).))....))............))))) H.sapiens.12/1-67 C.UCUGUUA...AUGACGUCUCUCCCUCUAAA.CCCCAUU.AAGGA..C........UGGGAG.A.G.GCAGAGCAAGCCU.......CAGAG #=GR H.sapiens.13/1-64 SS (.((((.((.......(((((((((((......((.........))...........)))))).).).)))......)).........))))) H.sapiens.13/1-64 G.UCACUGC...AUGAUCCGCUCUGGU.CAAA.CCCUUCC...AGG..C......CAGCCAGA.G.U.GGGGAU..GGUCU.......GUGAC #=GR H.sapiens.14/1-62 SS ...((((.(...((...((((((.(((......((((......)))..)........))).)).).).))...)...)).).......))).. H.sapiens.14/1-62 C.ACUGCUG...AUGACGAACUAUCUC.UAAC.UGGUCUU..GACC..A.......CGAGCUA.G.U.UCUGAA...UU.G.......CAGGG #=GR H.sapiens.15/1-63 SS .......((..(.((((((((((.(((((................)...........)))))).).).)).......))))......)))... H.sapiens.15/1-63 U.UUUCAUC..UAUGAGGGUGUUUCCUCUAAA..CCUACG...AGG...........GAGGAA.C.A.CCUGAU...CUUA.....CAGAAAA #=GR B.taurus.1/1-64 SS ......(((..(((.(.(((((((((........(((......)))............))))).).).))...)...)))).......))... B.taurus.1/1-64 C.UUGCGUU..AAUGAGAACAGAAACG.UAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGGAU..GGUUG.......GCAAC #=GR B.taurus.2/1-64 SS ......(((..(((.(.(((((((((........(((......)))............))))).).).))...)...)))).......))... B.taurus.2/1-64 C.UUGCGUU..AAUGAGAACAGAAACG.AAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGGAU..GGUUG.......GCAAC #=GR B.taurus.3/1-66 SS (.(.(((..(.(.....(((((((((.....(.((((......))).)).........))))).).).))..))..))).).......).... B.taurus.3/1-66 C.CCGGUGCC.UAUGACGGUCUGUCUG.AAAA.CCAGCCC...CUG.GU........GGGGCA.G.A.CCUGAG.AACCUG.......GCGUG #=GR B.taurus.4/1-64 SS ......(((..(((.(.(((((((((........(((......)))............))))).).).))...)...)))).......))... B.taurus.4/1-64 ACUUGCGUU..AAUGAGAACAGAAACG.UAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGGAU..GGUUG.......GCAA. #=GR B.taurus.5/1-61 SS (.((((((....(((.((.((((((.(.(.......))))..)))).............)))).).).)))).)...)............... B.taurus.5/1-61 G.CCAGAUG...AUGAGGACCUGUGCG.GAAA.CCCCCCG..CGGG..C........UGCCCA.U.G.UCUGAG...CCC........CUGGC #=GR B.taurus.6/1-67 SS (.(((..((..((.....((((((.((.(((.............)).).........)).))).).).)))))...))))............. B.taurus.6/1-67 G.AUGCGUC..CAUGAAGUCACCAGCC.CCAA.GCCCCUC...GUG.GU........GGGUGG.U.G.AUGGAA.CCGUCA.....AAGCAGU #=GR B.taurus.7/1-61 SS (.((((..(...((..(((((((((.((((..............))...........)))))).).).))).)).)..))).......))... B.taurus.7/1-61 U.UUUGCCC...AUGAAGGUGUUCCCUCUAAA..CCUAC....GUG...........GAGGAA.U.G.CCUGAU.GUCCAG.......GAAAA #=GR O.aries.1/1-68 SS (.(.((.((...(....((((((((((.(....((((......))).)........))))))).).).)))))...))..)......)..... O.aries.1/1-68 G.ACGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUCU.UGGAC.GC......CUGGUCCU.U.C.CUUGAU..GUUCU......CACGGC #=GR S.scrofa.1/1-68 SS .......((...(((((((((((((((.(....((((......))).)........))))))).)...))))........)......))))). S.scrofa.1/1-68 G.ACGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUUG.UGGAC.GC......CUGGUCCU.U.C.CCUGAU..GUUCU......CAUGGC #=GR S.scrofa.2/1-65 SS .....((((..((.(.((((((((((.....(.((((......))).)).........))))).).).)).).....).)).......).))) S.scrofa.2/1-65 C.UGGCACC..CAUGACAGUCUGCCUA.AAAA.CCAGCCC...CUG.GU........GGGGCA.G.A.CUCGAG.AACCUG.......GCGUG #=GR S.scrofa.3/1-63 SS ...........(((....))).((((((((..............))...........)))))).....((((......)))......)..... S.scrofa.3/1-63 A.UUUUAUC..CAUGAAAGUGUUUCCUCUAAA..CCUAU....GUG...........GAGGAA.C.A.CCUGAU.GUCCAG......GAAAAU #=GR S.scrofa.4/1-64 SS .....((((..((.(.((((((((((.....(.(((........)).)).........))))).).).)).).....).)).......).))) S.scrofa.4/1-64 C.UGGCACC..CAUGACAGUCUGCCUA.AAAA.CCAGCC....CUG.GU........GGGGCA.G.A.CUCGAG.AACCUG.......GCGUG #=GR C.elegans.1/1-64 SS (.((((.((...((.(.((((...(((......(((........)).).........)))....).).))).))...)).........))))) C.elegans.1/1-64 G.AGGCAGCUUUGUGACGACCUUUGGC.UAAA.CUCCAUC..GUGA.GC........GCCUCU.G.G.UCUGAU...GC.........GCCUC #=GR S.mansoni.1/1-67 SS ...(((.((...(.(((((((((((((..............................)))))).).).)).............))).)))))) S.mansoni.1/1-67 C.UCGCUAU...AUGACGAUGGCAAUC.UCAA..AUGUU....CAU..U........GGUUGC.C.A.UUUGAU..GAAAUCAGUUUUGUGUG #=GC SS_cons <-<<<<-----------<<<<<<<<<<-------<<<______>>>----------->>>>>>->->->>------------------>>>>> #=GC RF_cons g.ucucauu..uAUGAuGgccucuccc.uAAA.ucccuuu...ggg..c........gggaga.g.g.cCuGAU..gcuug.......gagac // <<EOF File format identified as Stockholm Check sequence: D.melanogaster.1/1-65 There are feature!!! Check sequence: D.melanogaster.2/1-63 There are feature!!! Check sequence: D.melanogaster.3/1-68 There are feature!!! Check sequence: O.niloticus.1/1-59 There are feature!!! Check sequence: O.niloticus.2/1-61 There are feature!!! Check sequence: O.niloticus.3/1-65 There are feature!!! Check sequence: D.rerio.1/1-66 There are feature!!! Check sequence: X.laevis.1/1-67 There are feature!!! Check sequence: G.gallus.1/1-63 There are feature!!! Check sequence: G.gallus.2/1-60 There are feature!!! Check sequence: G.gallus.3/1-73 There are feature!!! Check sequence: M.musculus.1/1-64 There are feature!!! Check sequence: M.musculus.2/1-64 There are feature!!! Check sequence: M.musculus.3/1-64 There are feature!!! Check sequence: M.musculus.4/1-65 There are feature!!! Check sequence: M.musculus.5/1-66 There are feature!!! Check sequence: M.musculus.6/1-61 There are feature!!! Check sequence: M.musculus.7/1-64 There are feature!!! Check sequence: M.musculus.8/1-67 There are feature!!! Check sequence: M.musculus.9/1-66 There are feature!!! Check sequence: M.musculus.10/1-66 There are feature!!! Check sequence: M.musculus.11/1-63 There are feature!!! Check sequence: M.musculus.12/1-65 There are feature!!! Check sequence: M.musculus.13/1-60 There are feature!!! Check sequence: M.musculus.14/1-67 There are feature!!! Check sequence: R.norvegicus.1/1-61 There are feature!!! Check sequence: R.norvegicus.2/1-64 There are feature!!! Check sequence: R.norvegicus.3/1-67 There are feature!!! Check sequence: R.norvegicus.4/1-61 There are feature!!! Check sequence: R.norvegicus.5/1-62 There are feature!!! Check sequence: R.norvegicus.6/1-67 There are feature!!! Check sequence: R.norvegicus.7/1-66 There are feature!!! Check sequence: H.sapiens.1/1-63 There are feature!!! Check sequence: H.sapiens.2/1-65 There are feature!!! Check sequence: H.sapiens.3/1-68 There are feature!!! Check sequence: H.sapiens.4/1-71 There are feature!!! Check sequence: H.sapiens.5/1-57 There are feature!!! Check sequence: H.sapiens.6/1-66 There are feature!!! Check sequence: H.sapiens.7/1-70 There are feature!!! Check sequence: H.sapiens.8/1-67 There are feature!!! Check sequence: H.sapiens.9/1-58 There are feature!!! Check sequence: H.sapiens.10/1-62 There are feature!!! Check sequence: H.sapiens.11/1-63 There are feature!!! Check sequence: H.sapiens.12/1-67 There are feature!!! Check sequence: H.sapiens.13/1-64 There are feature!!! Check sequence: H.sapiens.14/1-62 There are feature!!! Check sequence: H.sapiens.15/1-63 There are feature!!! Check sequence: B.taurus.1/1-64 There are feature!!! Check sequence: B.taurus.2/1-64 There are feature!!! Check sequence: B.taurus.3/1-66 There are feature!!! Check sequence: B.taurus.4/1-64 There are feature!!! Check sequence: B.taurus.5/1-61 There are feature!!! Check sequence: B.taurus.6/1-67 There are feature!!! Check sequence: B.taurus.7/1-61 There are feature!!! Check sequence: O.aries.1/1-68 There are feature!!! Check sequence: S.scrofa.1/1-68 There are feature!!! Check sequence: S.scrofa.2/1-65 There are feature!!! Check sequence: S.scrofa.3/1-63 There are feature!!! Check sequence: S.scrofa.4/1-64 There are feature!!! Check sequence: C.elegans.1/1-64 There are feature!!! Check sequence: S.mansoni.1/1-67 There are feature!!! Check sequence: Dm/1-25 There are feature!!!
Standard error
Aug 13, 2020 12:06:03 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Aug 13, 2020 12:06:03 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Aug 13, 2020 12:06:03 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Warning : Unknown Stockholm annotation type code seq Aug 13, 2020 12:06:03 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Aug 13, 2020 12:06:03 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Warning : Unknown Stockholm annotation type code seq Aug 13, 2020 12:06:03 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Aug 13, 2020 12:06:03 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Warning : Unknown Stockholm annotation type code seq DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@20dbb27a, jalview.ws.jws2.jabaws2.Jws2Instance@370631f9, jalview.ws.jws2.jabaws2.Jws2Instance@733c7910, jalview.ws.jws2.jabaws2.Jws2Instance@35ea9f44, jalview.ws.jws2.jabaws2.Jws2Instance@e5d2ab6, jalview.ws.jws2.jabaws2.Jws2Instance@6bb58fb7, jalview.ws.jws2.jabaws2.Jws2Instance@14125063, jalview.ws.jws2.jabaws2.Jws2Instance@5b04bd93, jalview.ws.jws2.jabaws2.Jws2Instance@2b287a3b, jalview.ws.jws2.jabaws2.Jws2Instance@6539f5b0, jalview.ws.jws2.jabaws2.Jws2Instance@11b0f481, jalview.ws.jws2.jabaws2.Jws2Instance@21275fac, jalview.ws.jws2.jabaws2.Jws2Instance@5a82577b, jalview.ws.jws2.jabaws2.Jws2Instance@6c72935d] DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@20dbb27a, jalview.ws.jws2.jabaws2.Jws2Instance@370631f9, jalview.ws.jws2.jabaws2.Jws2Instance@733c7910, jalview.ws.jws2.jabaws2.Jws2Instance@35ea9f44, jalview.ws.jws2.jabaws2.Jws2Instance@e5d2ab6, jalview.ws.jws2.jabaws2.Jws2Instance@6bb58fb7, jalview.ws.jws2.jabaws2.Jws2Instance@14125063, jalview.ws.jws2.jabaws2.Jws2Instance@5b04bd93, jalview.ws.jws2.jabaws2.Jws2Instance@2b287a3b, jalview.ws.jws2.jabaws2.Jws2Instance@6539f5b0, jalview.ws.jws2.jabaws2.Jws2Instance@11b0f481, jalview.ws.jws2.jabaws2.Jws2Instance@21275fac, jalview.ws.jws2.jabaws2.Jws2Instance@5a82577b, jalview.ws.jws2.jabaws2.Jws2Instance@6c72935d] Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change