Standard output
Reading file: examples/testdata/rna-alignment.xml
File format identified as Rnaml
Output file in 'Stockholm':
# STOCKHOLM 1.0
#=GR /rna-alignmen.0/1-295 SS .....(((.(((((((((...[[[[.((((((((((.....)))))(((((....)))).)((...(((((...........(((((...((((....)))).)))..)).......((((((.......))))))(((((((((....))).))))).)..)))..)))))))))))))...((((......((((((...(((((.]]]]))))))))))).....))))......((((((((....))))))))...........................)))))))).
/rna-alignmen.0/1-295 gaggaaaguccgggCUCCAUAGGGCAGAGUGCCAGGUAACGCCUGGGAGGCGCGAGCCUACGGAAAGUGCCACAGAAAACAACCGCCUAAGCGCGCAAGCGCCGGUAAGGGUGAAAAGGUGCGGUAAGAGCGCACCGCACGGCUGGCAACAGUUCGUGGCUAGGUAAACCCCACUCGGAGCAAGACCAAAUAGGGAUCCAUUGGCGUGGCCCGCGCUGGAUCCGGGUAGGUUGCUAAAGGCGGCCAGCGAUGGUCGUCGUAGAGGAAUGACUGUCCUCGacagaacccggcuua
#=GR /rna-alignmen.1/1-250 SS ..............((((...[[[[.((((((((((.....)))))(((((....)))).)((...(((((............(((((((((((((....)))))))))))..))........((((((.......))))))(((((((((....)))))))).).)))..)))))))))))))...((((((((((.....(((.]]]])))...))))))))....)).............(....)
/rna-alignmen.1/1-250 gaggaaaguccggacUUCGCAGAAAAAGGUGCCAGUGAAAAACUGGGGGCCGUAAGGCUACGGAAAGUGUAACAGAAAACAAACCGCUAAUUCUACCUAGGUAAGAUUAGACAGGAUGAAAAUGUCGAGCUUAUGGCUCGACCUCUUUGUGGAAACACAAGGACGCUGCAAACCCCACCUGAAGCAAGAAAGAGUUCGUUUCAGUUUUUCGCUCAGGAACUCUUAGAGUCGCUCGAGGAUUUUGGUGAC
//
<<EOF
File format identified as Stockholm
Check sequence: /rna-alignmen.0/1-295
There are feature!!!
Check sequence: /rna-alignmen.1/1-250
There are feature!!!