Class jalview.io.NewickFileTests

3

tests

0

failures

0

ignored

0.033s

duration

100%

successful

Tests

Test Duration Result
testTreeIO 0.006s passed
testTreeIO 0.012s passed
testTreeIO 0.015s passed

Standard output

 'Tree with quotes' :
('Syn_PROSU-1_IIh_3d(CA4)|CK_Syn_PROSU-1_1907':1.0638313,'Syn_MINOS11_5.3_3d(CA4)|CK_Syn_MINOS11_750':1.063831);
Attempting to connect with MSAprobsWS...
 'Tree with double escaped comma in node' :
('Syn_PROSU-1_IIh_3d(CA4)|CK_Syn_PROSU-1_1907':1.0638313,'Syn_MINOS11_5.3_3d(CA4)''|CK_Syn_MINOS11_750':1.063831);
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@3483231b
 'Simple uniref50 newick' :
(((FER_BRANA:128.0,FER3_RAPSA:128.0):50.75,FER_CAPAA:178.75):121.94443,(Q93Z60_ARATH:271.45456,((O80429_MAIZE:183.0,FER1_MAIZE:183.0):30.5,((Q7XA98_TRIPR:90.0,FER1_PEA:90.0):83.32143,(((FER2_ARATH:64.0,FER1_ARATH:64.0):94.375,(FER1_SPIOL:124.5,FER1_MESCR:124.5):33.875):6.4166718,((Q93XJ9_SOLTU:33.5,FER1_SOLLC:33.5):49.0,FER_CAPAN:82.5):82.29167):8.529755):40.178574):57.95456):29.239868);
Attempting to connect with GLprobsWS...

Standard error

Aug 13, 2020 12:06:19 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!