File format identified as PDB
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 57.5/158.3
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
OXIDOREDUCTASE/ELECTRON TRANSPORT 08-MAY-00 1GAQ
1GAQ
reading 690 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
690 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 34 ms
File format identified as PDB
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 44.2/109.1
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
GLYCOSYLTRANSFERASE 07-JUN-95 1XYZ
A COMMON PROTEIN FOLD AND SIMILAR ACTIVE SITE IN TWO
DISTINCT FAMILIES OF BETA-GLYCANASES
found biomolecule 1: A
biomolecule 1: number of transforms: 1
found biomolecule 2: B
biomolecule 2: number of transforms: 1
Setting space group name to P 1
1XYZ
reading 5621 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
5621 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 51 ms
File format identified as PDB
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 45.3/109.1
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
TYROSINE KINASE 04-MAY-99 1QCF
CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH A SRC FAMILY-
SELECTIVE TYROSINE KINASE INHIBITOR
found biomolecule 1: A
biomolecule 1: number of transforms: 1
PTR = O-PHOSPHOTYROSINE
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
Setting space group name to P 21 21 21
1QCF
reading 3959 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
3959 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 24 ms
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 44.3/109.1
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
OXIDOREDUCTASE/ELECTRON TRANSPORT 08-MAY-00 1GAQ
1GAQ
reading 690 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
690 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 6 ms
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 39.4/109.1
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
GLYCOSYLTRANSFERASE 07-JUN-95 1XYZ
A COMMON PROTEIN FOLD AND SIMILAR ACTIVE SITE IN TWO
DISTINCT FAMILIES OF BETA-GLYCANASES
found biomolecule 1: A
biomolecule 1: number of transforms: 1
found biomolecule 2: B
biomolecule 2: number of transforms: 1
Setting space group name to P 1
1XYZ
reading 5621 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
5621 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 29 ms
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 39.7/109.1
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
TYROSINE KINASE 04-MAY-99 1QCF
CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH A SRC FAMILY-
SELECTIVE TYROSINE KINASE INHIBITOR
found biomolecule 1: A
biomolecule 1: number of transforms: 1
PTR = O-PHOSPHOTYROSINE
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
Setting space group name to P 21 21 21
1QCF
reading 3959 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
3959 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 20 ms
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 37.6/109.1
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
reading 51 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
51 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 15.1.3 2018-01-29 21:09 DSSP analysis for model 1.1 - null
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer in Java for our purposes.
Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841.
All bioshapes have been deleted and must be regenerated.
Time for creating model: 3 ms
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 35.6/109.1
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
TRANSPORT PROTEIN 08-APR-15 1EJG
1EJG
reading 4 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
4 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 2 ms
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.3 2018-01-29 21:09
java.vendor: Java: AdoptOpenJDK
java.version: Java 11.0.5
os.name: Linux
Access: ALL
memory: 35.6/109.1
processors available: 4
useCommandThread: false
The Resolver thinks Pdb
TRANSPORT PROTEIN 08-APR-15 4UJ4
4UJ4
reading 6 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
6 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 1 ms