Class jalview.datamodel.SequenceTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testAddAlignmentAnnotation | 0s | passed |
| testAddDBRef | 0s | passed |
| testAddPDBId | 0s | passed |
| testAddSequenceFeatures | 0.001s | passed |
| testCheckValidRange | 0.003s | passed |
| testCopyConstructor_noDataset | 0.001s | passed |
| testCopyConstructor_withDataset | 0.001s | passed |
| testCreateDatasetSequence | 0s | passed |
| testDeleteChars | 0s | passed |
| testDeleteChars_withDbRefsAndFeatures | 0s | passed |
| testDeleteChars_withGaps | 0s | passed |
| testDeriveSequence_existingDataset | 0.004s | passed |
| testDeriveSequence_noDatasetGapped | 0s | passed |
| testDeriveSequence_noDatasetUngapped | 0.013s | passed |
| testFindFeatures | 0.001s | passed |
| testFindIndex | 0.001s | passed |
| testFindIndex_withCursor | 0s | passed |
| testFindPosition | 0.001s | passed |
| testFindPositionMap | 0.001s | passed |
| testFindPosition_withCursor | 0.001s | passed |
| testFindPosition_withCursorAndEdits | 0.001s | passed |
| testFindPositions | 0.001s | passed |
| testGapBitset | 0.001s | passed |
| testGapMap | 0.001s | passed |
| testGetAlignmentAnnotations_forCalcIdAndLabel | 0s | passed |
| testGetAnnotation | 0s | passed |
| testGetAnnotation_forLabel | 0s | passed |
| testGetCharAt | 0s | passed |
| testGetPrimaryDBRefs_nucleotide | 0.001s | passed |
| testGetPrimaryDBRefs_peptide | 0.001s | passed |
| testGetSequence | 0.001s | passed |
| testGetSequenceFeatures | 0.001s | passed |
| testGetStartGetEnd | 0.001s | passed |
| testGetSubsequence | 0.001s | passed |
| testInsertCharAt | 0s | passed |
| testInsertGapsAndGapmaps | 0s | passed |
| testIsProtein | 0.001s | passed |
| testLocateVisibleStartofSequence | 0.003s | passed |
| testReplace | 0.001s | passed |
| testSetDatasetSequence_cascading | 0.001s | passed |
| testSetDatasetSequence_toSelf | 0.001s | passed |
| testSetName | 0.001s | passed |
| testUpdatePDBIds | 0.001s | passed |
Standard output
Attempting to connect with ProbconsWS... >>>>>> 2 Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@14125063 Attempting to connect with MSAprobsWS... >SEQ1/1-50 PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT >SEQ2/1-50 PTEIKCYRTWEAPNNPMRWNLIDVIILWTGQRPNKENMIPESDFAI-WDWT >SEQ3/1-50 PTEIICYRTWRNPNNPMRWNLIRVIILWTGMRPNKGNMIPESDFHI-WDWT >SEQ4/1-50 PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRSNKGNIIPESDFHI-WDWT >SEQ5/1-50 PTEMICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPASDFHI-WDWT >SEQ6/1-50 PTEIICYRTNRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHR-WDWT >SEQ7/1-50 PTEIICYRTWRAPNNPMRWNLIDVIILWHGQRPNKGNMIPESDFHI-WDWT >SEQ8/1-50 PTEIICYFTWRAPNNPMRWNLIDVIILWTTQRPNKGNMIPESDFHI-WDAT >SEQ9/1-50 PTEIVCYRTWRAPNNPMRWNIIDVIILWTGQRPNKGNMNPESDFHI-WDWV >SEQ10/1-50 PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMNPESDFHI-WDWT >SEQ11/1-50 PTEAICYRTWRAPNNPMRWNLIDVIILWTQQRPNKGNMIPESDMHI-WDWT >SEQ12/1-50 PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT >SEQ13/1-50 PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT >SEQ14/1-50 PTEIICYRTWRAPNQPMRWNLIDVIILWTGQRPNKGNMPPESDFHI-WDWT >SEQ15/1-50 PTEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMICESAFHI-WDWT >SEQ16/1-50 PTEICCYRTWRAPNNPMRWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT >SEQ17/1-50 PTEIICYRTWRAPNNPMTWNLIDVIILWTGQRPNKGNMIPESDFHI-WDWT >SEQ18/1-50 PTEIICYRTIRAPNNPMRWNLIDVIILWTGQRPNKGWMIPESDFHI-WDWN >SEQ19/1-50 PFEIICYRTWRAPNNPMRWNLIDVIILWTGQRPNCGNMIPESDFHI-WWWE >SEQ20/1-50 TTEIICYRTWRAPNNPMRWNLIDVIILWTGQNPNKGNMIPESDFHI-WLWT
Standard error
SequenceFeature type may not be null: 4 8 null desc POSSIBLE IMPLEMENTATION ERROR: null sequence name passed to constructor. Aug 13, 2020 12:06:03 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully!