Class jalview.analysis.DnaTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testCompareCodonPos | 0.002s | passed |
| testCompareCodonPos_isSymmetric | 0.002s | passed |
| testCompareCodonPos_oneOnly | 0s | passed |
| testConvertCodon | 0.001s | passed |
| testGetComplement | 0s | passed |
| testReverseCdna | 0.002s | passed |
| testReverseSequence | 0s | passed |
| testTranslateCdna_hiddenColumns | 0.001s | passed |
| testTranslateCdna_sequenceOrderIndependent | 0.002s | passed |
| testTranslateCdna_simple | 0.001s | passed |
| testTranslateCdna_withUntranslatableCodons | 0.007s | passed |
| testTranslateCdna_withUntranslatableCodonsAndHiddenColumns | 0.020s | passed |
Standard output
K: AAA [0, 1, 2] G: GGG [0, 1, 2] K: GGG [0, 1, 2] G: AAA [0, 1, 2] K: AA-A [0, 1, 3] G: GGG [0, 1, 2] K: AAA [0, 1, 2] G: GG-G [0, 1, 3] K: A-AA [0, 2, 3] G: GG-G [0, 1, 3] K: A-A-A [0, 2, 4] G: GG-G [0, 1, 3] K: A-AA [0, 2, 3] G: GG--G [0, 1, 4] K: AA-A [0, 1, 3] G: G-GG [0, 2, 3] K: AA--A [0, 1, 4] G: G-GG [0, 2, 3] K: AAA [0, 1, 2] G: G-GG [0, 2, 3] K: -AAA [1, 2, 3] G: G-GG [0, 2, 3] K: -AA-A [1, 2, 4] G: G-GG [0, 2, 3] K: -AAA [1, 2, 3] G: G-G-G [0, 2, 4] K: -A-AA [1, 3, 4] G: G-G-G [0, 2, 4] K: -A-A-A [1, 3, 5] G: G-G-G [0, 2, 4] K: -A-AA [1, 3, 4] G: G-G--G [0, 2, 5] K: -AA-A [1, 2, 4] G: G--GG [0, 3, 4] K: -AA--A [1, 2, 5] G: G--GG [0, 3, 4] K: -AAA [1, 2, 3] G: G--GG [0, 3, 4] K: A-AA [0, 2, 3] G: -GGG [1, 2, 3] K: A-A-A [0, 2, 4] G: -GGG [1, 2, 3] K: A-AA [0, 2, 3] G: -GG-G [1, 2, 4] K: A--AA [0, 3, 4] G: -GG-G [1, 2, 4] K: A--AA [0, 3, 4] G: -GGG [1, 2, 3] K: A--AA [0, 3, 4] G: -GG--G [1, 2, 5] K: AA-A [0, 1, 3] G: -GGG [1, 2, 3] K: AA--A [0, 1, 4] G: -GGG [1, 2, 3] K: AAA [0, 1, 2] G: -GGG [1, 2, 3] K: AAA [0, 1, 2] G: GGG [0, 1, 2] K: GGG [0, 1, 2] G: AAA [0, 1, 2] K: AA-A [0, 1, 3] G: GGG [0, 1, 2] K: GGG [0, 1, 2] G: AA-A [0, 1, 3] K: AAA [0, 1, 2] G: GG-G [0, 1, 3] K: GG-G [0, 1, 3] G: AAA [0, 1, 2] K: A-AA [0, 2, 3] G: GG-G [0, 1, 3] K: GG-G [0, 1, 3] G: A-AA [0, 2, 3] K: A-A-A [0, 2, 4] G: GG-G [0, 1, 3] K: GG-G [0, 1, 3] G: A-A-A [0, 2, 4] K: A-AA [0, 2, 3] G: GG--G [0, 1, 4] K: GG--G [0, 1, 4] G: A-AA [0, 2, 3] K: AA-A [0, 1, 3] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: AA-A [0, 1, 3] K: AA--A [0, 1, 4] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: AA--A [0, 1, 4] K: AAA [0, 1, 2] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: AAA [0, 1, 2] K: -AAA [1, 2, 3] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: -AAA [1, 2, 3] K: -AA-A [1, 2, 4] G: G-GG [0, 2, 3] K: G-GG [0, 2, 3] G: -AA-A [1, 2, 4] K: -AAA [1, 2, 3] G: G-G-G [0, 2, 4] K: G-G-G [0, 2, 4] G: -AAA [1, 2, 3] K: -A-AA [1, 3, 4] G: G-G-G [0, 2, 4] K: G-G-G [0, 2, 4] G: -A-AA [1, 3, 4] K: -A-A-A [1, 3, 5] G: G-G-G [0, 2, 4] K: G-G-G [0, 2, 4] G: -A-A-A [1, 3, 5] K: -A-AA [1, 3, 4] G: G-G--G [0, 2, 5] K: G-G--G [0, 2, 5] G: -A-AA [1, 3, 4] K: -AA-A [1, 2, 4] G: G--GG [0, 3, 4] K: G--GG [0, 3, 4] G: -AA-A [1, 2, 4] K: -AA--A [1, 2, 5] G: G--GG [0, 3, 4] K: G--GG [0, 3, 4] G: -AA--A [1, 2, 5] K: -AAA [1, 2, 3] G: G--GG [0, 3, 4] K: G--GG [0, 3, 4] G: -AAA [1, 2, 3] K: A-AA [0, 2, 3] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: A-AA [0, 2, 3] K: A-A-A [0, 2, 4] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: A-A-A [0, 2, 4] K: A-AA [0, 2, 3] G: -GG-G [1, 2, 4] K: -GG-G [1, 2, 4] G: A-AA [0, 2, 3] K: A--AA [0, 3, 4] G: -GG-G [1, 2, 4] K: -GG-G [1, 2, 4] G: A--AA [0, 3, 4] K: A--AA [0, 3, 4] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: A--AA [0, 3, 4] K: A--AA [0, 3, 4] G: -GG--G [1, 2, 5] K: -GG--G [1, 2, 5] G: A--AA [0, 3, 4] K: AA-A [0, 1, 3] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: AA-A [0, 1, 3] K: AA--A [0, 1, 4] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: AA--A [0, 1, 4] K: AAA [0, 1, 2] G: -GGG [1, 2, 3] K: -GGG [1, 2, 3] G: AAA [0, 1, 2] K: -AA--A [1, 2, 5] G: G--GG [0, 3, 4] >SEQ1/1-12 CAGTTCGTAGAA >SEQ2/1-12 TAGTTCGTAGAA >SEQ3/1-12 CAGTTCGTAGAA >SEQ4/1-12 CAGTTCGTAGAA >SEQ5/1-12 CAGTTCGTAGAA >SEQ6/1-12 CAGTTCGTAGAA >SEQ7/1-12 CAGTTCGTAGAA >SEQ8/1-12 CAGTTCGTAGAA Original >SEQ1/1-4 QFVE >SEQ2/1-4 *FVE >SEQ3/1-4 QFVE >SEQ4/1-4 QFVE >SEQ5/1-4 QFVE >SEQ6/1-4 QFVE >SEQ7/1-4 QFVE >SEQ8/1-4 QFVE Sorted >SEQ7/1-4 QFVE >SEQ8/1-4 QFVE >SEQ4/1-4 QFVE >SEQ5/1-4 QFVE >SEQ3/1-4 QFVE >SEQ1/1-4 QFVE >SEQ2/1-4 *FVE >SEQ6/1-4 QFVE
Standard error
trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon. trimming contigs for incomplete terminal codon.