Class jalview.analysis.AnnotationSorterTest

all > jalview.analysis > AnnotationSorterTest

tests

failures

ignored

2.583s

duration

100%

successful

Tests
Standard output
Standard error

Tests

Test	Duration	Result
testNoSort_autocalcFirst	0.001s	passed
testSortBySequenceAndType_autocalcFirst	0s	passed
testSortBySequenceAndType_autocalcLast	0s	passed
testSortByTypeAndSequence_autocalcFirst	0.001s	passed
testSortByTypeAndSequence_autocalcLast	0s	passed
testSort_timingPresorted	0.713s	passed
testSort_timingSemisorted	1.384s	passed
testSort_timingUnsorted	0.484s	passed

Standard output

Timing test for presorted 50 sequences and 100 annotations took 0ms
Timing test for presorted 500 sequences and 1000 annotations took 12ms
registry.getSupportedServices: [RNAalifoldWS, AAConWS, MuscleWS, ClustalWS, ClustalOWS, DisemblWS, MSAprobsWS, MafftWS, GLprobsWS, IUPredWS, TcoffeeWS, GlobPlotWS, ProbconsWS, JronnWS]
Attempting to connect with MafftWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672
Attempting to connect with MuscleWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@900b235
Attempting to connect with ClustalWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889
Attempting to connect with ClustalOWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04
Attempting to connect with TcoffeeWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa
Attempting to connect with ProbconsWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328
Attempting to connect with MSAprobsWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08
Attempting to connect with GLprobsWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@31160493
Attempting to connect with AAConWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815
Attempting to connect with RNAalifoldWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@18760326
Attempting to connect with JronnWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@20848dde
Attempting to connect with DisemblWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@284080e7
Attempting to connect with GlobPlotWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee
Attempting to connect with IUPredWS...
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e
Timing test for presorted 5000 sequences and 10000 annotations took 677ms
Sort by label for semisorted 50 sequences and 100 annotations took 0ms
Resort by sequence for semisorted 50 sequences and 100 annotations took 1ms
Resort by label for semisorted 50 sequences and 100 annotations took 0ms
Sort by label for semisorted 500 sequences and 1000 annotations took 6ms
Resort by sequence for semisorted 500 sequences and 1000 annotations took 6ms
Resort by label for semisorted 500 sequences and 1000 annotations took 6ms
Sort by label for semisorted 5000 sequences and 10000 annotations took 457ms
Resort by sequence for semisorted 5000 sequences and 10000 annotations took 445ms
Resort by label for semisorted 5000 sequences and 10000 annotations took 443ms
Timing test for unsorted 50 sequences and 100 annotations took 1ms
Timing test for unsorted 500 sequences and 1000 annotations took 6ms
Timing test for unsorted 5000 sequences and 10000 annotations took 457ms

Standard error

Rebuild WS Menu for service change
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DEBUG - Old discovery thread has finished.
DEBUG - Firing service changed event for []
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DEBUG - Firing service changed event for []
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DEBUG - Firing service changed event for []
DEBUG - Firing service changed event for []
DEBUG - Firing service changed event for []
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DEBUG - Firing service changed event for []
DEBUG - Firing service changed event for []
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Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connectToRegistry
INFO: Connected to RegistryWS successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
DEBUG - Scanning news items: newsnew=false and lastDate is Thu Aug 13 13:06:18 BST 2020
DEBUG - Saved last read date as 13 Aug 2020, 13:06:18
DEBUG - Scanning news items: newsnew=false and lastDate is Thu Aug 13 13:06:18 BST 2020
DEBUG - Saved last read date as 13 Aug 2020, 13:06:18
DEBUG - Scanning news items: newsnew=false and lastDate is Thu Aug 13 13:06:18 BST 2020
DEBUG - Saved last read date as 13 Aug 2020, 13:06:18
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Aug 13, 2020 12:06:23 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
DEBUG - Firing service changed event for [jalview.ws.jws2.jabaws2.Jws2Instance@47ab2e04, jalview.ws.jws2.jabaws2.Jws2Instance@629cdd08, jalview.ws.jws2.jabaws2.Jws2Instance@31160493, jalview.ws.jws2.jabaws2.Jws2Instance@4baaa889, jalview.ws.jws2.jabaws2.Jws2Instance@900b235, jalview.ws.jws2.jabaws2.Jws2Instance@5ab1b672, jalview.ws.jws2.jabaws2.Jws2Instance@2ce4a328, jalview.ws.jws2.jabaws2.Jws2Instance@893b7aa, jalview.ws.jws2.jabaws2.Jws2Instance@5ed8c815, jalview.ws.jws2.jabaws2.Jws2Instance@284080e7, jalview.ws.jws2.jabaws2.Jws2Instance@1930dfee, jalview.ws.jws2.jabaws2.Jws2Instance@78aa329e, jalview.ws.jws2.jabaws2.Jws2Instance@20848dde, jalview.ws.jws2.jabaws2.Jws2Instance@18760326]
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
Rebuild WS Menu for service change
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Rebuild WS Menu for service change
Rebuild WS Menu for service change
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