Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ArgsParser	35	24	13	1.0100%	Show methods

Class ArgsParser

Class ArgsParser	Line # 35	Total Statements 24	Complexity 13	TOTAL Coverage 1.0100%
ArgsParser(String[])   ArgsParser(String[])	3939	6.06	3.03	1.0 1.0100%
getValue(String) : String   getValue(String) : String	5959	1.01	1.01	1.0 1.0100%
getValue(String,boolean) : String   getValue(String,boolean) : String	6464	11.011	5.05	1.0 1.0100%
contains(String) : boolean   contains(String) : boolean	9494	4.04	2.02	1.0 1.0100%
nextValue() : String   nextValue() : String	107107	1.01	1.01	1.0 1.0100%
getSize() : int   getSize() : int	112112	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.8	jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue	1PASS
	0.775	jalview.bin.ArgsParserTest.testGetValuejalview.bin.ArgsParserTest.testGetValue	1PASS
	0.65	jalview.bin.ArgsParserTest.testGetValue_decodedjalview.bin.ArgsParserTest.testGetValue_decoded	1PASS
	0.45	jalview.bin.ArgsParserTest.testContainsjalview.bin.ArgsParserTest.testContains	1PASS
	0.325	jalview.bin.ArgsParserTest.testNextValuejalview.bin.ArgsParserTest.testNextValue	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.bin;
22
23		import java.net.URLDecoder;
24		import java.util.Vector;
25
26		/**
27		* Notes: this argParser does not distinguish between parameter switches,
28		* parameter values and argument text. If an argument happens to be identical to
29		* a parameter, it will be taken as such (even though it didn't have a '-'
30		* prefixing it).
31		*
32		* @author Andrew Waterhouse and JBP documented.
33		*
34		*/
		100% Uncovered Elements: 0 (40) Complexity: 13 Complexity Density: 0.54
35		public class ArgsParser
36		{
37		Vector<String> vargs = null;
38
		100% Uncovered Elements: 0 (10) Complexity: 3 Complexity Density: 0.5
39	39	public ArgsParser(String[] args)...
40		{
41	39	vargs = new Vector<String>();
42	189	for (int i = 0; i < args.length; i++)
43		{
44	150	String arg = args[i].trim();
45	150	if (arg.charAt(0) == '-')
46		{
47	75	arg = arg.substring(1);
48		}
49	150	vargs.addElement(arg);
50		}
51		}
52
53		/**
54		* check for and remove first occurence of arg+parameter in arglist.
55		*
56		* @param arg
57		* @return return the argument following the given arg if arg was in list.
58		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
59	126	public String getValue(String arg)...
60		{
61	126	return getValue(arg, false);
62		}
63
		100% Uncovered Elements: 0 (15) Complexity: 5 Complexity Density: 0.45
64	284	public String getValue(String arg, boolean utf8decode)...
65		{
66	284	int index = vargs.indexOf(arg);
67	284	String dc = null, ret = null;
68	284	if (index != -1)
69		{
70	38	ret = vargs.elementAt(index + 1).toString();
71	38	vargs.removeElementAt(index);
72	38	vargs.removeElementAt(index);
73	38	if (utf8decode && ret != null)
74		{
75	24	try
76		{
77	24	dc = URLDecoder.decode(ret, "UTF-8");
78	24	ret = dc;
79		} catch (Exception e)
80		{
81		// TODO: log failure to decode
82		}
83		}
84		}
85	284	return ret;
86		}
87
88		/**
89		* check for and remove first occurence of arg in arglist.
90		*
91		* @param arg
92		* @return true if arg was present in argslist.
93		*/
		100% Uncovered Elements: 0 (6) Complexity: 2 Complexity Density: 0.5
94	278	public boolean contains(String arg)...
95		{
96	278	if (vargs.contains(arg))
97		{
98	35	vargs.removeElement(arg);
99	35	return true;
100		}
101		else
102		{
103	243	return false;
104		}
105		}
106
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
107	36	public String nextValue()...
108		{
109	36	return vargs.remove(0);
110		}
111
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
112	53	public int getSize()...
113		{
114	53	return vargs.size();
115		}
116
117		}