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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder
jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder
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1.0100%
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jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
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0.888888988.9%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.fts.core.FTSDataColumnPreferences
jalview.fts.core.FTSDataColumnPreferences
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0.77966178%
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jalview.gui.structurechooser.TDBResultAnalyser
jalview.gui.structurechooser.TDBResultAnalyser
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0.7584269675.8%
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jalview.structures.models.SequenceStructureBindingModel
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0.7575%
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jalview.fts.core.FTSRestRequest
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0.741935574.2%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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0.6470588464.7%
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
|
0.637563.7%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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0.6285714562.9%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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0.62562.5%
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jalview.gui.JalviewDialog
jalview.gui.JalviewDialog
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0.609756161%
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jalview.util.MapUtils
jalview.util.MapUtils
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0.608695660.9%
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com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
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0.660%
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
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0.537662353.8%
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jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
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0.5244444652.4%
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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0.523255852.3%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.5142857451.4%
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com.stevesoft.pat.Multi_stage2
com.stevesoft.pat.Multi_stage2
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0.5111111451.1%
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mc_view.PDBChain
mc_view.PDBChain
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0.502645550.3%
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com.stevesoft.pat.Multi
com.stevesoft.pat.Multi
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0.550%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.550%
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mc_view.Bond
mc_view.Bond
|
0.550%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
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0.550%
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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0.495750749.6%
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jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
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0.4782608747.8%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.4772727247.7%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
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0.4579439245.8%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.4571428645.7%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.437543.8%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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0.435185243.5%
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jalview.io.StructureFile
jalview.io.StructureFile
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0.4325581543.3%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.4285714342.9%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.4183673641.8%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.4140127341.4%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.4102564241%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.3921568739.2%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.datamodel.FloatContactMatrix
jalview.datamodel.FloatContactMatrix
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0.3838%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.3793103437.9%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.37537.5%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.3712871437.1%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.3535%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.3489208534.9%
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jalview.util.Format
jalview.util.Format
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0.345755734.6%
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jalview.jbgui.FilterOption
jalview.jbgui.FilterOption
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0.3333333433.3%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.3333333433.3%
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jalview.util.Comparison
jalview.util.Comparison
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0.3307086533.1%
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
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0.3280423332.8%
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jalview.fts.service.threedbeacons.TDB_FTSData
jalview.fts.service.threedbeacons.TDB_FTSData
|
0.3225806432.3%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.3221649532.2%
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jalview.gui.structurechooser.StructureChooserQuerySource
jalview.gui.structurechooser.StructureChooserQuerySource
|
0.3232%
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jalview.ws.datamodel.alphafold.PAEContactMatrix
jalview.ws.datamodel.alphafold.PAEContactMatrix
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0.3097345231%
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.3076923230.8%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.330%
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.294871829.5%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.2927272629.3%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2909090829.1%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.285714328.6%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.2831325228.3%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
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0.2779922827.8%
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jalview.gui.AppJmol.RenderPanel
jalview.gui.AppJmol.RenderPanel
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0.2702702627%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2620689626.2%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.2602510526%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2525%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.2381562123.8%
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jalview.ws.WSClient
jalview.ws.WSClient
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0.2352941223.5%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.ws.dbsources.EBIAlfaFold
jalview.ws.dbsources.EBIAlfaFold
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0.2325581523.3%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
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0.2307692323.1%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.226586122.7%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.2072538920.7%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.2042253520.4%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
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0.220%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.1959459519.6%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.195624219.6%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.191082819.1%
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jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
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0.190476219%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
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0.187518.8%
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jalview.log.JLogger
jalview.log.JLogger
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0.1868131918.7%
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jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
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0.1857142918.6%
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jalview.bin.Console
jalview.bin.Console
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0.1839622718.4%
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jalview.fts.core.FTSRestResponse
jalview.fts.core.FTSRestResponse
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0.1818181918.2%
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jalview.io.FileParse
jalview.io.FileParse
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0.180055418%
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jalview.gui.BlogReader
jalview.gui.BlogReader
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0.1740331517.4%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
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0.1726618717.3%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.1466666614.7%
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org.json.simple.JSONValue
org.json.simple.JSONValue
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0.1460674114.6%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.1428571514.3%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.1428571514.3%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
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0.1308411213.1%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.1287356312.9%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
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org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.1209677412.1%
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jalview.datamodel.rna.NucStructureI
jalview.datamodel.rna.NucStructureI
|
0.1176470611.8%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.1027397310.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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0.098639469.9%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.09523819.5%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.090395489%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
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0.0851370848.5%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.081632658.2%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
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0.081632658.2%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.081081088.1%
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jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.076923087.7%
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jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
|
0.076923087.7%
|
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.07547177.5%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.058823535.9%
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jalview.ws.datamodel.alphafold.MappableContactMatrix
jalview.ws.datamodel.alphafold.MappableContactMatrix
|
0.0585774075.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0576131685.8%
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jalview.util.Platform
jalview.util.Platform
|
0.0569306955.7%
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jalview.gui.StructureChooser.PDBEntryTableModel
jalview.gui.StructureChooser.PDBEntryTableModel
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0.052631585.3%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
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0.055%
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jalview.bin.Cache
jalview.bin.Cache
|
0.0487804864.9%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.043478264.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
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0.044%
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jalview.util.MapList
jalview.util.MapList
|
0.044%
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org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.036005013.6%
|
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0338983053.4%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0289855082.9%
|
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0288461542.9%
|
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.0268456382.7%
|
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
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|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
|
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0216450232.2%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0208333342.1%
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jalview.util.QuickSort
jalview.util.QuickSort
|
0.0194174761.9%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
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mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
|
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jalview.gui.AppJmol
jalview.gui.AppJmol
|
0.0144927541.4%
|
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
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jalview.gui.JvOptionPane
jalview.gui.JvOptionPane
|
0.0115830121.2%
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jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
|
0.0097560981%
|
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.009685231%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
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jalview.datamodel.GroupSet
jalview.datamodel.GroupSet
|
0.008620690.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
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0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.00611790870.6%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0042238650.4%
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.00202429150.2%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.00131147540.1%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00103039670.1%
|
|
|
jalview.project.Jalview2XML
jalview.project.Jalview2XML
|
7.276255E-40.1%
|
|
