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jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
|
1.0100%
|
|
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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
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jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
|
1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
|
1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
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jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder
jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder
|
1.0100%
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jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
|
1.0100%
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jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
|
0.8571428785.7%
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|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
|
0.880%
|
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.880%
|
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.785234978.5%
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|
|
jalview.fts.core.FTSDataColumnPreferences
jalview.fts.core.FTSDataColumnPreferences
|
0.77966178%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.771428677.1%
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jalview.fts.core.FTSRestRequest
jalview.fts.core.FTSRestRequest
|
0.741935574.2%
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jalview.gui.structurechooser.TDBResultAnalyser
jalview.gui.structurechooser.TDBResultAnalyser
|
0.7134831571.3%
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|
jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
|
0.7028985670.3%
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jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
|
0.655172465.5%
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jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
|
0.655172465.5%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
|
0.637563.7%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.6285714562.9%
|
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.62562.5%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
|
0.6190476461.9%
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com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.660%
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jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
|
0.660%
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jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
|
0.5244444652.4%
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.523255852.3%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.5142857451.4%
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.511688351.2%
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com.stevesoft.pat.Multi_stage2
com.stevesoft.pat.Multi_stage2
|
0.5111111451.1%
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com.stevesoft.pat.Multi
com.stevesoft.pat.Multi
|
0.550%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.550%
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mc_view.Bond
mc_view.Bond
|
0.550%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.550%
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
|
0.4872521248.7%
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|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.4772727247.7%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
|
0.4579439245.8%
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jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
|
0.4444444544.4%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.437543.8%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.435185243.5%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.4285714342.9%
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jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
|
0.4242424442.4%
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jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
|
0.4166666641.7%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.4140127341.4%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.4139534841.4%
|
|
|
org.json.JSONTokener
org.json.JSONTokener
|
0.4132841241.3%
|
|
|
jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.4102564241%
|
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.3921568739.2%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
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jalview.jbgui.FilterOption
jalview.jbgui.FilterOption
|
0.384615438.5%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.37537.5%
|
|
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.3655172336.6%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.3535%
|
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.3333333433.3%
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|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.3292079332.9%
|
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
|
0.3280423332.8%
|
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|
mc_view.PDBChain
mc_view.PDBChain
|
0.322751332.3%
|
|
|
jalview.fts.service.threedbeacons.TDB_FTSData
jalview.fts.service.threedbeacons.TDB_FTSData
|
0.3225806432.3%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
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jalview.gui.structurechooser.StructureChooserQuerySource
jalview.gui.structurechooser.StructureChooserQuerySource
|
0.3232%
|
|
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.3076923230.8%
|
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.294871829.5%
|
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.2927272629.3%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
|
jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
|
0.2779922827.8%
|
|
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jalview.util.Comparison
jalview.util.Comparison
|
0.2755905427.6%
|
|
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2620689626.2%
|
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org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
|
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|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2525%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
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jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
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|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.2352941223.5%
|
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jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
|
0.2333333323.3%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
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jalview.util.Format
jalview.util.Format
|
0.2236024922.4%
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jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
|
0.2142857221.4%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
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jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
|
0.1956521719.6%
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jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
|
0.190476219%
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jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.190476219%
|
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.1879021818.8%
|
|
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.187518.8%
|
|
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jalview.log.JLogger
jalview.log.JLogger
|
0.1868131918.7%
|
|
|
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
|
0.1857142918.6%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.1842900418.4%
|
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.183263618.3%
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jalview.fts.core.FTSRestResponse
jalview.fts.core.FTSRestResponse
|
0.1818181918.2%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.1787148617.9%
|
|
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jalview.bin.Console
jalview.bin.Console
|
0.174528317.5%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.1726618717.3%
|
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jalview.io.FileParse
jalview.io.FileParse
|
0.1689750716.9%
|
|
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
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jalview.io.AlignFile
jalview.io.AlignFile
|
0.155405415.5%
|
|
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
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org.json.simple.JSONValue
org.json.simple.JSONValue
|
0.1460674114.6%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.1428571514.3%
|
|
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jalview.io.BackupFiles
jalview.io.BackupFiles
|
0.14214.2%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.1333333413.3%
|
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org.json.JSONObject
org.json.JSONObject
|
0.1322549913.2%
|
|
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.11428571511.4%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.1129032211.3%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.1027397310.3%
|
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|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
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org.json.JSONArray
org.json.JSONArray
|
0.1010638310.1%
|
|
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.ws.dbsources.EBIAlfaFold
jalview.ws.dbsources.EBIAlfaFold
|
0.0930232559.3%
|
|
|
jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.090909099.1%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.090395489%
|
|
|
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
|
0.086956528.7%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.086956528.7%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.0863309358.6%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.084905668.5%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.076923087.7%
|
|
|
jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
|
0.076923087.7%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0700636957%
|
|
|
jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.0620689656.2%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.gui.StructureChooser.PDBEntryTableModel
jalview.gui.StructureChooser.PDBEntryTableModel
|
0.052631585.3%
|
|
|
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
|
0.055%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.043478264.3%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.0408163264.1%
|
|
|
jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
|
0.044%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.0397111924%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.0373831763.7%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0353788363.5%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0311653113.1%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0307298343.1%
|
|
|
jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
|
0.033%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0289855082.9%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0288461542.9%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0268456382.7%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0208333342.1%
|
|
|
jalview.project.Jalview2XML
jalview.project.Jalview2XML
|
0.0206160562.1%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.019801982%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.0194174761.9%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.01446051151.4%
|
|
|
jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
|
0.0097560981%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0048426150.5%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.00178412130.2%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.00131147540.1%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00103039670.1%
|
|
