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jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
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1.0100%
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jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
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1.0100%
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jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
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0.8571428785.7%
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jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
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0.880%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.880%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.785234978.5%
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jalview.fts.core.FTSDataColumnPreferences
jalview.fts.core.FTSDataColumnPreferences
|
0.77966178%
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jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
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0.777777877.8%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.771428677.1%
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jalview.ws.utils.UrlDownloadClient
jalview.ws.utils.UrlDownloadClient
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0.7575%
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jalview.fts.core.FTSRestRequest
jalview.fts.core.FTSRestRequest
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0.741935574.2%
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jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
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0.7028985670.3%
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jalview.gui.structurechooser.TDBResultAnalyser
jalview.gui.structurechooser.TDBResultAnalyser
|
0.6629213766.3%
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jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
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0.655172465.5%
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jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
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0.655172465.5%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
|
0.637563.7%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
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0.6190476461.9%
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jalview.gui.JalviewDialog
jalview.gui.JalviewDialog
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0.609756161%
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jalview.util.MapUtils
jalview.util.MapUtils
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0.608695660.9%
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jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
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0.660%
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jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
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0.5244444652.4%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.5142857451.4%
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jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
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0.550%
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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0.495750749.6%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
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0.4579439245.8%
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jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
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0.4444444544.4%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.4331210343.3%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.4285714342.9%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
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0.4242424442.4%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.4183673641.8%
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org.json.JSONTokener
org.json.JSONTokener
|
0.4132841241.3%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.3921568739.2%
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jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
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0.3913043439.1%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.datamodel.FloatContactMatrix
jalview.datamodel.FloatContactMatrix
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0.3838%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.37537.5%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.3712871437.1%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.3417266334.2%
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jalview.jbgui.FilterOption
jalview.jbgui.FilterOption
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0.3333333433.3%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.3333333433.3%
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jalview.util.Comparison
jalview.util.Comparison
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0.3307086533.1%
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
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0.3280423332.8%
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jalview.util.Format
jalview.util.Format
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0.3250517532.5%
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jalview.fts.service.threedbeacons.TDB_FTSData
jalview.fts.service.threedbeacons.TDB_FTSData
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0.3225806432.3%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.3221649532.2%
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jalview.gui.structurechooser.StructureChooserQuerySource
jalview.gui.structurechooser.StructureChooserQuerySource
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0.3232%
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jalview.ws.datamodel.alphafold.PAEContactMatrix
jalview.ws.datamodel.alphafold.PAEContactMatrix
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0.3097345231%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2909090829.1%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.285714328.6%
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jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
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0.2779922827.8%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2620689626.2%
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org.json.JSONObject.Null
org.json.JSONObject.Null
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0.2525%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2525%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.ws.WSClient
jalview.ws.WSClient
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0.2352941223.5%
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jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
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0.2333333323.3%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
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0.2307692323.1%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.2275862122.8%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
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0.226415122.6%
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jalview.ws.dbsources.EBIAlfaFold
jalview.ws.dbsources.EBIAlfaFold
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0.2159468421.6%
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jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
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0.2142857221.4%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.2042253520.4%
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jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
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0.1956521719.6%
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jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
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0.190476219%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.1882202318.8%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
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0.187518.8%
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jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
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0.1857142918.6%
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jalview.fts.core.FTSRestResponse
jalview.fts.core.FTSRestResponse
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0.1818181918.2%
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mc_view.PDBChain
mc_view.PDBChain
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0.1798941818%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.1783439517.8%
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jalview.log.JLogger
jalview.log.JLogger
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0.1648351716.5%
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jalview.bin.Console
jalview.bin.Console
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0.1603773516%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.1481171514.8%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.1466666614.7%
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org.json.simple.JSONValue
org.json.simple.JSONValue
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0.1460674114.6%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.1428571514.3%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.1428571514.3%
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org.json.JSONObject
org.json.JSONObject
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0.1322549913.2%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.1248391312.5%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.datamodel.rna.NucStructureI
jalview.datamodel.rna.NucStructureI
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0.1176470611.8%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
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0.11428571511.4%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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0.1129032211.3%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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org.json.JSONArray
org.json.JSONArray
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0.1010638310.1%
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jalview.util.Platform
jalview.util.Platform
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0.09900999.9%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
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0.09523819.5%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.090395489%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.0903614469%
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jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
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0.086956528.7%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
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0.081632658.2%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.088%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.076923087.7%
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jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
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0.076923087.7%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.076666677.7%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.06948646.9%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.065420566.5%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.ws.datamodel.alphafold.MappableContactMatrix
jalview.ws.datamodel.alphafold.MappableContactMatrix
|
0.0585774075.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0576131685.8%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.0540540555.4%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
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jalview.gui.StructureChooser.PDBEntryTableModel
jalview.gui.StructureChooser.PDBEntryTableModel
|
0.052631585.3%
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jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
|
0.055%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.0466321264.7%
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jalview.io.StructureFile
jalview.io.StructureFile
|
0.0465116284.7%
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jalview.gui.BlogReader
jalview.gui.BlogReader
|
0.0441988974.4%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.041095894.1%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.0408163264.1%
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jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
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0.044%
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jalview.util.MapList
jalview.util.MapList
|
0.044%
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org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.037257363.7%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.034482763.4%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0338983053.4%
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jalview.bin.Cache
jalview.bin.Cache
|
0.0311653113.1%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
|
0.033%
|
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0288461542.9%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0268456382.7%
|
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.0259740262.6%
|
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0216450232.2%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0208333342.1%
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jalview.util.QuickSort
jalview.util.QuickSort
|
0.0194174761.9%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
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jalview.io.FileParse
jalview.io.FileParse
|
0.0110803321.1%
|
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.009685231%
|
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
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jalview.datamodel.GroupSet
jalview.datamodel.GroupSet
|
0.008620690.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
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|
jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.00577200580.6%
|
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.00166852060.2%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.00131147540.1%
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