|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
jalview.io.DataSourceType
jalview.io.DataSourceType
|
1.0100%
|
|
|
jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
|
1.0100%
|
|
|
jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
|
|
|
mc_view.Residue
mc_view.Residue
|
1.0100%
|
|
|
jalview.structure.StructureImportSettings.TFType
jalview.structure.StructureImportSettings.TFType
|
1.0100%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
|
|
|
jalview.datamodel.rna.AnnotCharSequence
jalview.datamodel.rna.AnnotCharSequence
|
0.8571428785.7%
|
|
|
jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
|
0.8461538684.6%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.880%
|
|
|
jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
|
0.777777877.8%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.75471775.5%
|
|
|
jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
|
0.7575%
|
|
|
jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
|
0.7575%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.7575%
|
|
|
jalview.fts.core.FTSDataColumnPreferences
jalview.fts.core.FTSDataColumnPreferences
|
0.745762774.6%
|
|
|
jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.7142857371.4%
|
|
|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.jbgui.GStructureViewer
jalview.jbgui.GStructureViewer
|
0.7065217570.7%
|
|
|
jalview.analysis.Rna
jalview.analysis.Rna
|
0.70570.5%
|
|
|
jalview.workers.StrucConsensusThread
jalview.workers.StrucConsensusThread
|
0.770%
|
|
|
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
|
0.695652269.6%
|
|
|
jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
|
0.687568.8%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.672131167.2%
|
|
|
jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.666666766.7%
|
|
|
jalview.io.LayeredDBNParser
jalview.io.LayeredDBNParser
|
0.656716465.7%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
|
|
|
jalview.io.LayeredDBNParser.Record
jalview.io.LayeredDBNParser.Record
|
0.6428571364.3%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.6285714562.9%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.62562.5%
|
|
|
jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
|
0.62562.5%
|
|
|
jalview.gui.JalviewDialog
jalview.gui.JalviewDialog
|
0.609756161%
|
|
|
jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
|
0.594202959.4%
|
|
|
jalview.analysis.StructureFrequency
jalview.analysis.StructureFrequency
|
0.5746268657.5%
|
|
|
jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
|
0.571428657.1%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.571428657.1%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.567556.7%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.565217456.5%
|
|
|
mc_view.PDBChain
mc_view.PDBChain
|
0.5608465756.1%
|
|
|
jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
|
0.5656%
|
|
|
jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.5656%
|
|
|
jalview.gui.BlogReader
jalview.gui.BlogReader
|
0.552486255.2%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.551020455.1%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.5555%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.5490196354.9%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.547169854.7%
|
|
|
jalview.urls.IdOrgSettings
jalview.urls.IdOrgSettings
|
0.5454545654.5%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.523255852.3%
|
|
|
jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
|
0.509756151%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.550%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.550%
|
|
|
jalview.io.LayeredDBNParser.Chain
jalview.io.LayeredDBNParser.Chain
|
0.550%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.datamodel.rna.NucStructure
jalview.datamodel.rna.NucStructure
|
0.550%
|
|
|
mc_view.Bond
mc_view.Bond
|
0.550%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.550%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
|
|
|
jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
|
|
|
jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
|
|
|
jalview.analysis.SecStrConsensus.SimpleBP
jalview.analysis.SecStrConsensus.SimpleBP
|
0.550%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.4761904847.6%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.4711538647.1%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4671052746.7%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.466216246.6%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.466101746.6%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.4620689746.2%
|
|
|
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
|
0.4579439245.8%
|
|
|
jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.4571428645.7%
|
|
|
jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.4392523543.9%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.4337194343.4%
|
|
|
jalview.gui.AppJmol.RenderPanel
jalview.gui.AppJmol.RenderPanel
|
0.4324324443.2%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.431818243.2%
|
|
|
jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.4285714342.9%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.4285714342.9%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.42790742.8%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.4224738842.2%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.4183673641.8%
|
|
|
jalview.gui.AssociatePdbFileWithSeq
jalview.gui.AssociatePdbFileWithSeq
|
0.418181841.8%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.4134615441.3%
|
|
|
jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
|
0.412541.2%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.4102564241%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.4102564241%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.40108440.1%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.440%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
|
0.440%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.3958333439.6%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.3955823239.6%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.388888938.9%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.387195138.7%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.3853503238.5%
|
|
|
com.stevesoft.pat.End
com.stevesoft.pat.End
|
0.3793103437.9%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.378752937.9%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.37537.5%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.3685300436.9%
|
|
|
com.stevesoft.pat.Start
com.stevesoft.pat.Start
|
0.3636363736.4%
|
|
|
jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
|
0.3630136836.3%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.3575757435.8%
|
|
|
jalview.jbgui.GStructureChooser.AssociateSeqPanel
jalview.jbgui.GStructureChooser.AssociateSeqPanel
|
0.352941235.3%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.3489208534.9%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.347222234.7%
|
|
|
jalview.bin.ArgsParser
jalview.bin.ArgsParser
|
0.344262334.4%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.3428571534.3%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.3380281633.8%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.3369565333.7%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.3333333433.3%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.3310344833.1%
|
|
|
jalview.gui.PromptUserConfig
jalview.gui.PromptUserConfig
|
0.3295454733%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.3289473732.9%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.3248407532.5%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
|
|
jalview.io.LayeredDBNParser.BpSpec
jalview.io.LayeredDBNParser.BpSpec
|
0.312531.2%
|
|
|
jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.312531.2%
|
|
|
jalview.gui.AppJmol
jalview.gui.AppJmol
|
0.304347830.4%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.330%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.2981818329.8%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.296234329.6%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.294871829.5%
|
|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.2945544429.5%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2909090829.1%
|
|
|
jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.290043329%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.2861668528.6%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.2859016428.6%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.285714328.6%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.285714328.6%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.282548528.3%
|
|
|
jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.282051328.2%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.2744148427.4%
|
|
|
com.stevesoft.pat.Multi
com.stevesoft.pat.Multi
|
0.2692307826.9%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.2691680226.9%
|
|
|
jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
|
0.2654867226.5%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.261589426.2%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.2608695626.1%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2567975825.7%
|
|
|
jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
|
0.25625.6%
|
|
|
jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
|
0.2525%
|
|
|
jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.2482758624.8%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.2440944924.4%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.2405660524.1%
|
|
|
jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
|
0.2424%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.2424%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.2392026623.9%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.2386363623.9%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.2352941223.5%
|
|
|
jalview.util.ErrorLog
jalview.util.ErrorLog
|
0.2352941223.5%
|
|
|
jalview.datamodel.rna.NucStructureI
jalview.datamodel.rna.NucStructureI
|
0.2352941223.5%
|
|
|
jalview.bin.BuildDetails
jalview.bin.BuildDetails
|
0.2352941223.5%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.2272727322.7%
|
|
|
jalview.gui.structurechooser.StructureChooserQuerySource
jalview.gui.structurechooser.StructureChooserQuerySource
|
0.2266666722.7%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.22522.5%
|
|
|
jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
|
0.2142857221.4%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.2087912120.9%
|
|
|
jalview.gui.BlogReader.LaunchJvBrowserOnItem
jalview.gui.BlogReader.LaunchJvBrowserOnItem
|
0.2083333320.8%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.2055749120.6%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2042253520.4%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.2039215720.4%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.2018779420.2%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.200787420.1%
|
|
|
jalview.bin.JalviewTaskbar
jalview.bin.JalviewTaskbar
|
0.220%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.1907894819.1%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.1859504118.6%
|
|
|
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
|
0.1857142918.6%
|
|
|
jalview.util.ArgParserUtils
jalview.util.ArgParserUtils
|
0.1807228918.1%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1803278618%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.176470617.6%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.1726618717.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1685994716.9%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1679687516.8%
|
|
|
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
|
0.1666666716.7%
|
|
|
jalview.util.UserAgent
jalview.util.UserAgent
|
0.1666666716.7%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1555555615.6%
|
|
|
com.stevesoft.pat.Multi_stage2
com.stevesoft.pat.Multi_stage2
|
0.1555555615.6%
|
|
|
jalview.datamodel.SequenceI
jalview.datamodel.SequenceI
|
0.1538461615.4%
|
|
|
jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
|
0.1467181414.7%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.1458333314.6%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1428571514.3%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1428571514.3%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.1428571514.3%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.1359223313.6%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.1333333413.3%
|
|
|
jalview.schemes.HmmerGlobalBackground
jalview.schemes.HmmerGlobalBackground
|
0.1333333413.3%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.1333333413.3%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.132369313.2%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.1293049512.9%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.124613812.5%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1212%
|
|
|
jalview.structure.StructureCommand
jalview.structure.StructureCommand
|
0.1212%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.1138613911.4%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
|
|
|
jalview.structure.StructureCommandsBase
jalview.structure.StructureCommandsBase
|
0.109756111%
|
|
|
jalview.gui.StructureChooser
jalview.gui.StructureChooser
|
0.1093247610.9%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.108810.9%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1081081110.8%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.10679611610.7%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.09523819.5%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0939597349.4%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0939597349.4%
|
|
|
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
|
0.093759.4%
|
|
|
jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.090909099.1%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.090395489%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0853658548.5%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.082568818.3%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0819838058.2%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.081632658.2%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.08011058%
|
|
|
jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.077894747.8%
|
|
|
jalview.schemes.HmmerLocalBackground
jalview.schemes.HmmerLocalBackground
|
0.076923087.7%
|
|
|
jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
|
0.076923087.7%
|
|
|
jalview.util.ChannelProperties
jalview.util.ChannelProperties
|
0.075862077.6%
|
|
|
jalview.io.StockholmFile
jalview.io.StockholmFile
|
0.074626867.5%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.067761816.8%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
|
|
|
jalview.gui.StructureViewer
jalview.gui.StructureViewer
|
0.066445186.6%
|
|
|
jalview.util.LaunchUtils
jalview.util.LaunchUtils
|
0.066339076.6%
|
|
|
jalview.bin.argparser.ArgParser
jalview.bin.argparser.ArgParser
|
0.064371266.4%
|
|
|
jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
|
0.063829796.4%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.0616438356.2%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0588625.9%
|
|
|
jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.058823535.9%
|
|
|
jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
|
0.0577777775.8%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.0576923085.8%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0576131685.8%
|
|
|
jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.056994825.7%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0560747655.6%
|
|
|
jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0555555565.6%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.0512820525.1%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.055%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.044642864.5%
|
|
|
jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
|
|
|
jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
|
0.0419847334.2%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.037735853.8%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0362318833.6%
|
|
|
jalview.bin.Commands
jalview.bin.Commands
|
0.0331695343.3%
|
|
|
jalview.bin.argparser.Arg
jalview.bin.argparser.Arg
|
0.0324483773.2%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.util.FileUtils
jalview.util.FileUtils
|
0.0267857152.7%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0254237282.5%
|
|
|
jalview.ws.dbsources.EBIAlfaFold
jalview.ws.dbsources.EBIAlfaFold
|
0.0199335552%
|
|
|
jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
|
0.017751481.8%
|
|
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
|
0.0169971681.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
|
0.0141509441.4%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0129954521.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0112359551.1%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0103092781%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.0087583720.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
|
jalview.gui.JvOptionPane
jalview.gui.JvOptionPane
|
0.0051480050.5%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
