|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.990%
|
|
|
jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
|
0.8461538684.6%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.880%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.7575%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.770%
|
|
|
jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
|
0.687568.8%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.685714368.6%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.636363663.6%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.62562.5%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.6162790761.6%
|
|
|
jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
|
0.605263260.5%
|
|
|
jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
|
0.5526315655.3%
|
|
|
com.stevesoft.pat.Multi_stage2
com.stevesoft.pat.Multi_stage2
|
0.522222252.2%
|
|
|
jalview.io.NewickFile
jalview.io.NewickFile
|
0.520491852%
|
|
|
jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
|
0.5087719650.9%
|
|
|
com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
|
0.550%
|
|
|
com.stevesoft.pat.Multi
com.stevesoft.pat.Multi
|
0.550%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.550%
|
|
|
jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
|
0.46446.4%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.448979644.9%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.4102564241%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.3853503238.5%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.3535%
|
|
|
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
|
0.347826134.8%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.3363636433.6%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.313725531.4%
|
|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.2945544429.5%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.2898550629%
|
|
|
jalview.analysis.TreeModel
jalview.analysis.TreeModel
|
0.2596899326%
|
|
|
com.stevesoft.pat.NullPattern
com.stevesoft.pat.NullPattern
|
0.2525%
|
|
|
com.stevesoft.pat.StringRule
com.stevesoft.pat.StringRule
|
0.2525%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.datamodel.SequenceNode
jalview.datamodel.SequenceNode
|
0.2307692323.1%
|
|
|
com.stevesoft.pat.Boundary
com.stevesoft.pat.Boundary
|
0.2222222222.2%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.1726618717.3%
|
|
|
com.stevesoft.pat.Branch
com.stevesoft.pat.Branch
|
0.140939614.1%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.1314432913.1%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.098039229.8%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
com.stevesoft.pat.Replacer
com.stevesoft.pat.Replacer
|
0.091891899.2%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.0914127459.1%
|
|
|
jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.090909099.1%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.090395489%
|
|
|
com.stevesoft.pat.ReplaceRule
com.stevesoft.pat.ReplaceRule
|
0.08771938.8%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.0833333368.3%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.082758628.3%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.073333337.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0445544574.5%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.0401673654%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0284552852.8%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.0078740160.8%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.0050505050.5%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.00500939270.5%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
