| Test | ||||
|---|---|---|---|---|
| testStructurePAE | 3FAIL | 1 Apr 13:15:12 | 0.68 |
No PAE for second chain. expected:<1> but was:<0>
java.lang.AssertionError: No PAE for second chain. expected:<1> but was:<0> at org.testng.AssertJUnit.fail(AssertJUnit.java:59) at org.testng.AssertJUnit.failNotEquals(AssertJUnit.java:364) at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:80) at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:245) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
| testStructurePAE | ||||
|---|---|---|---|---|
| com.stevesoft.pat.patInf com.stevesoft.pat.patInf | 1.0100% |
|
||
| com.stevesoft.pat.Rthings com.stevesoft.pat.Rthings | 0.8461538684.6% |
|
||
| mc_view.Residue mc_view.Residue | 0.8461538684.6% |
|
||
| com.stevesoft.pat.oneChar com.stevesoft.pat.oneChar | 0.6285714562.9% |
|
||
| com.stevesoft.pat.OrMark com.stevesoft.pat.OrMark | 0.62562.5% |
|
||
| jalview.util.MapUtils jalview.util.MapUtils | 0.608695660.9% |
|
||
| com.stevesoft.pat.SubMark com.stevesoft.pat.SubMark | 0.660% |
|
||
| jalview.ext.jmol.JmolParser jalview.ext.jmol.JmolParser | 0.5532467455.3% |
|
||
| com.stevesoft.pat.StrPos com.stevesoft.pat.StrPos | 0.523255852.3% |
|
||
| com.stevesoft.pat.Multi_stage2 com.stevesoft.pat.Multi_stage2 | 0.5111111451.1% |
|
||
| com.stevesoft.pat.Multi com.stevesoft.pat.Multi | 0.550% |
|
||
| com.stevesoft.pat.Bracket com.stevesoft.pat.Bracket | 0.550% |
|
||
| mc_view.Bond mc_view.Bond | 0.550% |
|
||
| com.stevesoft.pat.wrap.StringWrap com.stevesoft.pat.wrap.StringWrap | 0.550% |
|
||
| com.stevesoft.pat.Range com.stevesoft.pat.Range | 0.4772727247.7% |
|
||
| com.stevesoft.pat.Pattern com.stevesoft.pat.Pattern | 0.437543.8% |
|
||
| com.stevesoft.pat.FastMulti com.stevesoft.pat.FastMulti | 0.435185243.5% |
|
||
| jalview.datamodel.HiddenCursorPosition jalview.datamodel.HiddenCursorPosition | 0.4285714342.9% |
|
||
| org.json.simple.parser.Yylex org.json.simple.parser.Yylex | 0.4012738840.1% |
|
||
| jalview.io.StructureFile jalview.io.StructureFile | 0.386046538.6% |
|
||
| jalview.datamodel.FloatContactMatrix jalview.datamodel.FloatContactMatrix | 0.3838% |
|
||
| com.stevesoft.pat.patInt com.stevesoft.pat.patInt | 0.3535% |
|
||
| jalview.datamodel.ContactMapHolder jalview.datamodel.ContactMapHolder | 0.3461538634.6% |
|
||
| jalview.ws.datamodel.alphafold.PAEContactMatrix jalview.ws.datamodel.alphafold.PAEContactMatrix | 0.3274336232.7% |
|
||
| jalview.util.Comparison jalview.util.Comparison | 0.3188976331.9% |
|
||
| org.json.simple.parser.JSONParser org.json.simple.parser.JSONParser | 0.3143564531.4% |
|
||
| com.stevesoft.pat.Or com.stevesoft.pat.Or | 0.294871829.5% |
|
||
| com.stevesoft.pat.Regex com.stevesoft.pat.Regex | 0.2927272629.3% |
|
||
| jalview.structure.StructureImportSettings jalview.structure.StructureImportSettings | 0.285714328.6% |
|
||
| mc_view.Atom mc_view.Atom | 0.282051328.2% |
|
||
| jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder | 0.2608695626.1% |
|
||
| mc_view.PDBChain mc_view.PDBChain | 0.2592592525.9% |
|
||
| jalview.datamodel.SequenceCursor jalview.datamodel.SequenceCursor | 0.2333333323.3% |
|
||
| jalview.util.Format jalview.util.Format | 0.2236024922.4% |
|
||
| jalview.io.AlignFile jalview.io.AlignFile | 0.2191780821.9% |
|
||
| jalview.gui.PromptUserConfig jalview.gui.PromptUserConfig | 0.215909121.6% |
|
||
| jalview.datamodel.Sequence jalview.datamodel.Sequence | 0.2041166420.4% |
|
||
| jalview.datamodel.features.FeatureStore jalview.datamodel.features.FeatureStore | 0.1842900418.4% |
|
||
| com.stevesoft.pat.RegOpt com.stevesoft.pat.RegOpt | 0.1726618717.3% |
|
||
| jalview.io.FileParse jalview.io.FileParse | 0.1689750716.9% |
|
||
| jalview.datamodel.AlignmentAnnotation jalview.datamodel.AlignmentAnnotation | 0.1642512116.4% |
|
||
| jalview.ws.dbsources.EBIAlfaFold jalview.ws.dbsources.EBIAlfaFold | 0.1507692315.1% |
|
||
| jalview.datamodel.Annotation jalview.datamodel.Annotation | 0.1428571514.3% |
|
||
| jalview.gui.SplashScreen jalview.gui.SplashScreen | 0.1233766212.3% |
|
||
| jalview.datamodel.annotations.AnnotationRowBuilder jalview.datamodel.annotations.AnnotationRowBuilder | 0.10256410410.3% |
|
||
| com.stevesoft.pat.parsePerl com.stevesoft.pat.parsePerl | 0.098639469.9% |
|
||
| org.json.simple.parser.Yytoken org.json.simple.parser.Yytoken | 0.096774199.7% |
|
||
| jalview.util.CaseInsensitiveString jalview.util.CaseInsensitiveString | 0.086956528.7% |
|
||
| jalview.datamodel.SequenceFeature jalview.datamodel.SequenceFeature | 0.0863309358.6% |
|
||
| jalview.gui.Console jalview.gui.Console | 0.082568818.3% |
|
||
| jalview.datamodel.PDBEntry jalview.datamodel.PDBEntry | 0.0818505368.2% |
|
||
| jalview.ws.datamodel.alphafold.MappableContactMatrix jalview.ws.datamodel.alphafold.MappableContactMatrix | 0.079497917.9% |
|
||
| jalview.util.Platform jalview.util.Platform | 0.0707547147.1% |
|
||
| jalview.datamodel.features.SequenceFeatures jalview.datamodel.features.SequenceFeatures | 0.0700636957% |
|
||
| jalview.log.JLogger jalview.log.JLogger | 0.065934076.6% |
|
||
| jalview.datamodel.DBRefEntry jalview.datamodel.DBRefEntry | 0.0616438356.2% |
|
||
| jalview.util.MapList jalview.util.MapList | 0.0538461545.4% |
|
||
| jalview.bin.Console jalview.bin.Console | 0.0492610824.9% |
|
||
| org.json.simple.JSONObject org.json.simple.JSONObject | 0.037735853.8% |
|
||
| jalview.datamodel.Alignment jalview.datamodel.Alignment | 0.0330882373.3% |
|
||
| com.stevesoft.pat.RegRes com.stevesoft.pat.RegRes | 0.0289855082.9% |
|
||
| jalview.ws.seqfetcher.DbSourceProxyImpl jalview.ws.seqfetcher.DbSourceProxyImpl | 0.0270270282.7% |
|
||
| jalview.bin.Cache jalview.bin.Cache | 0.0220385682.2% |
|
||
| jalview.datamodel.HiddenColumnsCursor jalview.datamodel.HiddenColumnsCursor | 0.0156251.6% |
|
||
| jalview.datamodel.HiddenSequences jalview.datamodel.HiddenSequences | 0.009132420.9% |
|
||
| jalview.datamodel.GroupSet jalview.datamodel.GroupSet | 0.008620690.9% |
|
||
| org.json.simple.JSONArray org.json.simple.JSONArray | 0.0080645160.8% |
|
||
| jalview.gui.Desktop jalview.gui.Desktop | 0.00568181840.6% |
|
||
| jalview.ext.jmol.JalviewJmolBinding jalview.ext.jmol.JalviewJmolBinding | 0.0040160640.4% |
|
||
| com.stevesoft.pat.CaseMgr com.stevesoft.pat.CaseMgr | 0.00278551530.3% |
|
||
| jalview.datamodel.HiddenColumns jalview.datamodel.HiddenColumns | 0.00235849060.2% |
|
||
| jalview.bin.Jalview jalview.bin.Jalview | 0.00179856120.2% |
|
||
| jalview.schemes.ResidueProperties jalview.schemes.ResidueProperties | 0.00105042020.1% |
|
||