Build #3

Build: #3 failed Changes by Gitlab User

Build result summary

Details

Completed
Duration
9 minutes
Labels
None
Agent
Default Agent
Revision
d9d218fe9b518987c14acfe100646789b1dbc30f d9d218fe9b518987c14acfe100646789b1dbc30f
Total tests
1925
Failing since
#2 (Changes by Gitlab User – )

Responsible

Code commits

Author Commit Message Commit date
Gitlab User Gitlab User d9d218fe9b518987c14acfe100646789b1dbc30f d9d218fe9b518987c14acfe100646789b1dbc30f JAL-4410 some tests to verify PAE is added to all sequences in a modeled structure
Gitlab User Gitlab User 6cc521ccfd153f8abdd6e16c22b987f4bc442f0c 6cc521ccfd153f8abdd6e16c22b987f4bc442f0c JAL-4410 convenience method to add all reference annotations for an alignment

Tests

New test failures 1
Status Test View job Duration
Collapse Failed EBIAlphaFoldTest checkImportPAEForStructure(examples/AlphaFold/AF-0000000203848083-model_v1.cif, examples/AlphaFold/AF-0000000203848083-predicted_aligned_error_v1.json) History
Clover and Tests 1 sec 
Classname: java.lang.AssertionError
Message:  no contact map found for AF-0000000203848083-model_v1|B expected [1] but found [0]
Stacktrace:
java.lang.AssertionError:  no contact map found for AF-0000000203848083-model_v1|B expected [1] but found [0]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Existing test failures 1
Status Test Failing since View job Duration 
Classname: java.lang.AssertionError
Message: Exception importing paefile 'examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json'
Stacktrace:
java.lang.AssertionError: Exception importing paefile 'examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json'
	at org.testng.Assert.fail(Assert.java:83)
	at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_1rvd1wm3rpc(EBIAlphaFoldTest.java:95)
	at jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure(EBIAlphaFoldTest.java:66)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
(56 more lines...)

JIRA issues

IssueDescriptionStatus
Unknown Issue TypeJAL-4410Could not obtain issue details from JIRA